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Effects of melatonin, proline, and salicylic acid on seedling growth, photosynthetic activity, and leaf nutrients of sorghum under salt stress. 褪黑素、脯氨酸和水杨酸对盐胁迫下高粱幼苗生长、光合作用活性和叶片养分的影响
IF 2.3 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-03-13 eCollection Date: 2024-03-01 DOI: 10.1002/pld3.574
Mehmet Sait Kiremit, Elif Öztürk, Hakan Arslan, Bhaskara Anggarda Gathot Subrata, Hasan Akay, Aigerim Bakirova

Soil salinization poses a significant challenge to the sustainability and productivity of agriculture worldwide. This issue continues to hinder plant growth, requiring innovative solutions to alleviate salt stress. Moreover, climate change accelerates soil salinization, which may soon spread to previously unaffected agricultural areas. Therefore, the present study evaluated the potential role of different seed priming agents (hydro (H), salicylic acid (SA), proline (P), and melatonin (MEL)) on seedlings and leaf macro and micronutrients of sorghum grown under four (.27, 2.5, 5.0, and 8.0 dS m-1) soil salinity conditions. Soil salinity drastically reduced all the growth parameters of sorghum seedlings, primarily the reduction in growth traits, which was remarkable after 2.5 dS m-1 soil salinity. In addition, plant height, shoot fresh weight, and stomata were reduced by 40.8%, 74.6%, and 36.5%, respectively, at 8.0 dS m-1 compared to .27 dS m-1. SA- and MEL-primed seeds mitigated the harmful effects of soil salinity by reducing Na+ accumulation in the leaves and increasing the K+/Na+ and Ca2+/Na+ ratios and photosynthetic activity under salt stress. However, the Zn2+, Mn2+, and Cu2+ contents of sorghum leaves increased with increasing soil salinity, and these nutrients also improved with seed priming by SA, MEL, and P. Considering all nutrients, MEL-primed sorghum seeds had better macro- and micro-nutrient uptake capacities than the H, SA, and P treatments under high soil salinity conditions. Finally, the present study showed that MEL-induced improvement in salt tolerance in sorghum seedlings was related to enhanced nutritional status, photosynthetic activity, and biomass production in salinized areas.

土壤盐碱化对全球农业的可持续性和生产力构成了重大挑战。这一问题继续阻碍植物生长,需要创新的解决方案来缓解盐胁迫。此外,气候变化加速了土壤盐碱化,可能很快就会蔓延到以前未受影响的农业地区。因此,本研究评估了在四种(0.27、2.5、5.0 和 8.0 dS m-1)土壤盐度条件下种植的高粱,不同种子引发剂(水(H)、水杨酸(SA)、脯氨酸(P)和褪黑素(MEL))对其幼苗和叶片宏量与微量营养元素的潜在作用。土壤盐分大大降低了高粱幼苗的各项生长参数,主要是生长性状的降低,在土壤盐分达到 2.5 dS m-1 后更为显著。此外,与 0.27 dS m-1 相比,8.0 dS m-1 下的植株高度、嫩枝鲜重和气孔分别减少了 40.8%、74.6% 和 36.5%。在盐胁迫下,SA 和 MEL-primed 种子通过减少叶片中的 Na+ 积累、提高 K+/Na+ 和 Ca2+/Na+ 比率以及光合作用活性,减轻了土壤盐分的有害影响。考虑到所有养分,在高土壤盐度条件下,MEL-primed 高粱种子的宏观和微观养分吸收能力均优于 H、SA 和 P 处理。最后,本研究表明,MEL 诱导的高粱幼苗耐盐性的提高与盐渍化地区营养状况、光合作用和生物量的提高有关。
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引用次数: 0
Chromosome-scale genome assembly of Poa trivialis and population genomics reveal widespread gene flow in a cool-season grass seed production system. Poa trivialis 染色体尺度基因组组装和种群基因组学揭示了冷季型草籽生产系统中广泛的基因流动。
IF 2.3 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-03-13 eCollection Date: 2024-03-01 DOI: 10.1002/pld3.575
Caio A C G Brunharo, Christopher W Benson, David R Huff, Jesse R Lasky

Poa trivialis (L.) is a cool-season grass species found in various environments worldwide. In addition to being a desired turfgrass species, it is a common weed of agricultural systems and natural areas. As a weed, it is an important contaminant of commercial cool-season grass seed lots, resulting in widespread gene flow facilitated by human activities and causing significant economic losses to farmers. To better understand and manage infestations, we assembled and annotated a haploid genome of P. trivialis and studied troublesome field populations from Oregon, the largest cool-season grass seed producing region in the United States. The genome assembly resulted in 1.35 Gb of DNA sequence distributed among seven chromosome-scale scaffolds, revealing a high content of transposable elements, conserved synteny with Poa annua, and a close relationship with other C3 grasses. A reduced-representation sequencing analysis of field populations revealed limited genetic diversity and suggested potential gene flow and human-assisted dispersal in the region. The genetic resources and insights into P. trivialis provided by this study will improve weed management strategies and enable the development of molecular detection tests for contaminated seed lots to limit seed-mediated gene flow. These resources should also be beneficial for turfgrass breeders seeking to improve desirable traits of commercial P. trivialis varieties and help to guide breeding efforts in other crops to enhance the resiliency of agricultural ecosystems under climate change. Significance Statement: The chromosome-scale assembly of Poa trivialis and population genomic analyses provide crucial insights into the gene flow of weedy populations in agricultural systems and contribute a valuable genomic resource for the plant science community.

Poa trivialis (L.) 是一种冷季型草种,分布于世界各地的各种环境中。除了是一种理想的草坪草种外,它还是农业系统和自然区域常见的杂草。作为一种杂草,它是商业冷季型草种子的重要污染源,导致基因在人类活动的推动下广泛流动,给农民造成重大经济损失。为了更好地了解和管理虫害,我们组装并注释了P. trivialis的单倍体基因组,并研究了美国最大的冷季型草种子产区俄勒冈州的麻烦田间种群。基因组组装产生了 1.35 Gb 的 DNA 序列,分布在七个染色体尺度的支架上,揭示了高含量的转座元件、与 Poa annua 的保守同源关系以及与其他 C3 禾本科植物的密切关系。对野外种群进行的简化代表测序分析表明,遗传多样性有限,并表明该地区可能存在基因流动和人类协助的扩散。本研究提供的遗传资源和对三尖杉(P. trivialis)的深入了解将改善杂草管理策略,并有助于开发受污染种子批次的分子检测测试,以限制种子介导的基因流。这些资源还将有益于草坪草育种者改善三尖杉商业品种的理想性状,并有助于指导其他作物的育种工作,以提高农业生态系统在气候变化下的适应能力。意义说明:三色堇(Poa trivialis)的染色体组组装和群体基因组分析为农业系统中杂草种群的基因流提供了重要的见解,为植物科学界贡献了宝贵的基因组资源。
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引用次数: 0
Non‐destructive, whole‐plant phenotyping reveals dynamic changes in water use efficiency, photosynthesis, and rhizosphere acidification of sorghum accessions under osmotic stress 非破坏性全株表型揭示渗透胁迫下高粱品种水分利用效率、光合作用和根圈酸化的动态变化
IF 3 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-03-07 DOI: 10.1002/pld3.571
Daniel N. Ginzburg, Jack A. Cox, Seung Y. Rhee
Noninvasive phenotyping can quantify dynamic plant growth processes at higher temporal resolution than destructive phenotyping and can reveal phenomena that would be missed by end‐point analysis alone. Additionally, whole‐plant phenotyping can identify growth conditions that are optimal for both above‐ and below‐ground tissues. However, noninvasive, whole‐plant phenotyping approaches available today are generally expensive, complex, and non‐modular. We developed a low‐cost and versatile approach to noninvasively measure whole‐plant physiology over time by growing plants in isolated hydroponic chambers. We demonstrate the versatility of our approach by measuring whole‐plant biomass accumulation, water use, and water use efficiency every two days on unstressed and osmotically stressed sorghum accessions. We identified relationships between root zone acidification and photosynthesis on whole‐plant water use efficiency over time. Our system can be implemented using cheap, basic components, requires no specific technical expertise, and should be suitable for any non‐aquatic vascular plant species.
与破坏性表型分析相比,非侵入性表型分析能以更高的时间分辨率量化植物的动态生长过程,并能揭示仅靠终点分析无法发现的现象。此外,整株表型还能确定地上和地下组织的最佳生长条件。然而,目前可用的非侵入式全植株表型方法一般都很昂贵、复杂且非模块化。我们开发了一种低成本、多功能的方法,通过在隔离的水培室中种植植物,非侵入式地测量整个植物的生理机能。我们每两天对未受胁迫和受渗透胁迫的高粱品种进行一次全株生物量积累、水分利用和水分利用效率的测量,证明了我们的方法具有多功能性。我们确定了根区酸化和光合作用对全株水分利用效率随时间变化的关系。我们的系统可以使用廉价的基本组件来实现,不需要专门的技术知识,应该适用于任何非水生维管植物物种。
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引用次数: 0
Identification and expression of strigolactone biosynthesis and signaling genes and the in vitro effects of strigolactones in olive (Olea europaea L.) 橄榄(Olea europaea L.)中绞股蓝内酯生物合成和信号转导基因的鉴定与表达以及绞股蓝内酯的体外效应
IF 3 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-02-25 DOI: 10.1002/pld3.568
Aslıhan Özbilen, Fatih Sezer, Kemal Melih Taşkin
Strigolactones (SLs), synthesized in plant roots, play a dual role in modulating plant growth and development, and in inducing the germination of parasitic plant seeds and arbuscular mycorrhizal fungi in the rhizosphere. As phytohormones, SLs are crucial in regulating branching and shaping plant architecture. Despite the significant impact of branching strategies on the yield performance of fruit crops, limited research has been conducted on SLs in these crops. In our study, we identified the transcript sequences of SL biosynthesis and signaling genes in olive (Olea europaea L.) using rapid amplification of cDNA ends. We predicted the corresponding protein sequences, analyzed their characteristics, and conducted molecular docking with bioinformatics tools. Furthermore, we quantified the expression levels of these genes in various tissues using quantitative real-time PCR. Our findings demonstrate the predominant expression of SL biosynthesis and signaling genes (OeD27, OeMAX3, OeMAX4, OeMAX1, OeD14, and OeMAX2) in roots and lateral buds, highlighting their importance in branching. Treatment with rac-GR24, an SL analog, enhanced the germination frequency of olive seeds in vitro compared with untreated embryos. Conversely, inhibition of SL biosynthesis with TIS108 increased lateral bud formation in a hard-to-root cultivar, underscoring the role of SLs as phytohormones in olives. These results suggest that modifying SL biosynthesis and signaling pathways could offer novel approaches for olive breeding, with potential applicability to other fruit crops.
在植物根部合成的链格内酯(SLs)具有双重作用,既能调节植物的生长和发育,又能诱导寄生植物种子和根瘤菌的萌发。作为植物激素,SLs 在调节分枝和塑造植物结构方面至关重要。尽管分枝策略对水果作物的产量表现有重大影响,但对这些作物中 SLs 的研究却很有限。在我们的研究中,我们利用 cDNA 末端快速扩增技术确定了橄榄(Olea europaea L.)中 SL 生物合成和信号转导基因的转录本序列。我们预测了相应的蛋白质序列,分析了其特征,并利用生物信息学工具进行了分子对接。此外,我们还利用实时定量 PCR 对这些基因在不同组织中的表达水平进行了量化。我们的研究结果表明,SL 生物合成和信号转导基因(OeD27、OeMAX3、OeMAX4、OeMAX1、OeD14 和 OeMAX2)主要在根和侧芽中表达,突出了它们在分枝过程中的重要性。与未处理的胚胎相比,用 SL 类似物 rac-GR24 处理可提高橄榄种子在体外的萌发率。相反,用 TIS108 抑制 SL 的生物合成会增加难生根栽培品种的侧芽形成,这突出了 SL 作为植物激素在橄榄中的作用。这些结果表明,改变SL的生物合成和信号传导途径可为橄榄育种提供新方法,并有可能应用于其他水果作物。
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引用次数: 0
A fibrous scaffold for in vitro culture and experimental studies of Physcomitrium patens 体外培养和实验研究用的纤维支架
IF 3 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-02-19 DOI: 10.1002/pld3.570
Ryan Calcutt, Yasaman Aghli, Treena Arinzeh, Ram Dixit
The model moss, Physcomitrium patens, is routinely cultured on cellophane placed over a solid nutrient medium. While this culture method is convenient for moss propagation, it is not suitable for studying how topographical features and mechanical cues from the environment influence the growth and development of moss. Here, we show that P. patens can be grown on fibrous scaffolds consisting of nanoscale, randomly oriented fibers composed of polyvinylidene tri-fluoroethylene (NRP). The moss adheres tightly to NRP in contrast to the lack of adhesion to cellophane. Adhesion to the scaffold is associated with slower tip growth of moss protonema for some time, followed by an increase in tip growth rate that is equivalent to that on cellophane. In addition, the orientation of the first subapical cell division plane differs between NRP-grown and cellophane-grown protonema. Nonetheless, moss colonies grown on NRP did not show signs of nutrient or photosynthetic stress and developed normal gametophores. Together, these data establish NRP as a suitable substrate for the culture of P. patens and to probe the influence of mechanical forces on tip growth and cell division of moss.
模式苔藓(Physcomitrium patens)的常规培养方法是将玻璃纸覆盖在固体营养培养基上。这种培养方法虽然方便苔藓繁殖,但并不适合研究环境的地形特征和机械线索如何影响苔藓的生长和发育。在这里,我们展示了可以在由纳米级随机取向的聚偏二氟乙烯(NRP)纤维组成的纤维支架上生长 P. patens。苔藓紧紧地粘附在 NRP 上,而不粘附在玻璃纸上。粘附在支架上一段时间后,苔藓原藻的顶端生长速度减慢,随后顶端生长速度加快,与玻璃纸上的生长速度相当。此外,生长在 NRP 上的原生苔藓和生长在玻璃纸上的原生苔藓的第一个近尖端细胞分裂平面的方向也不同。尽管如此,在 NRP 上生长的苔藓菌落并没有表现出营养或光合作用胁迫的迹象,而且配子体发育正常。总之,这些数据证明 NRP 是一种合适的基质,可用于培养原叶蕨类植物并探究机械力对苔藓顶端生长和细胞分裂的影响。
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引用次数: 0
The melon Fom-1–Prv resistance gene pair: Correlated spatial expression and interaction with a viral protein 甜瓜 Fom-1-Prv 抗性基因对:相关空间表达以及与病毒蛋白的相互作用
IF 3 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-02-14 DOI: 10.1002/pld3.565
Michael Normantovich, Arie Amitzur, Sharon Offri, Ekaterina Pashkovsky, Yula Shnaider, Shahar Nizan, Ohad Yogev, Avi Jacob, Christopher G. Taylor, Cécile Desbiez, Steven A. Whitham, Amalia Bar-Ziv, Rafael Perl-Treves
The head-to-head oriented pair of melon resistance genes, Fom-1 and Prv, control resistance to Fusarium oxysporum races 0 and 2 and papaya ringspot virus (PRSV), respectively. They encode, via several RNA splice variants, TIR-NBS-LRR proteins, and Prv has a C-terminal extra domain with a second NBS homologous sequence. In other systems, paired R-proteins were shown to operate by “labor division,” with one protein having an extra integrated domain that directly binds the pathogen's Avr factor, and the second protein executing the defense response. We report that the expression of the two genes in two pairs of near-isogenic lines was higher in the resistant isoline and inducible by F. oxysporum race 2 but not by PRSV. The intergenic DNA region separating the coding sequences of the two genes acted as a bi-directional promoter and drove GUS expression in transgenic melon roots and transgenic tobacco plants. Expression of both genes was strong in melon root tips, around the root vascular cylinder, and the phloem and xylem parenchyma of tobacco stems and petioles. The pattern of GUS expression suggests coordinated expression of the two genes. In agreement with the above model, Prv's extra domain was shown to interact with the cylindrical inclusion protein of PRSV both in yeast cells and in planta.
甜瓜抗性基因 Fom-1 和 Prv 是一对头对头的基因,分别控制对 Fusarium oxysporum races 0 和 2 以及木瓜环斑病毒(PRSV)的抗性。它们通过几种 RNA 剪接变体编码 TIR-NBS-LRR 蛋白,Prv 的 C 端额外结构域具有第二个 NBS 同源序列。在其他系统中,成对的 R 蛋白通过 "分工 "发挥作用,其中一个蛋白具有额外的整合结构域,可直接结合病原体的 Avr 因子,而第二个蛋白则执行防御反应。我们报告说,在两对接近同源的品系中,抗性分离品系中这两个基因的表达量较高,而且可被 F. oxysporum race 2 诱导,但不能被 PRSV 诱导。分隔两个基因编码序列的基因间 DNA 区域是一个双向启动子,可驱动转基因甜瓜根系和转基因烟草植株中 GUS 的表达。这两个基因在甜瓜根尖、根维管束周围以及烟草茎和叶柄的韧皮部和木质部实质中都有很强的表达。GUS 的表达模式表明这两个基因是协调表达的。与上述模型一致,Prv 的额外结构域在酵母细胞和植物体内都与 PRSV 的圆柱形包涵蛋白相互作用。
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引用次数: 0
The maize striate leaves2 (sr2) gene encodes a conserved DUF3732 domain and is homologous to the rice yss1 gene. 玉米条纹叶2(sr2)基因编码一个保守的DUF3732结构域,与水稻yss1基因同源。
IF 2.3 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-02-13 eCollection Date: 2024-02-01 DOI: 10.1002/pld3.567
Meghan J Brady, Maya Cheam, Jonathan I Gent, R Kelly Dawe

Maize striate leaves2 (sr2) is a mutant that causes white stripes on leaves that has been used in mapping studies for decades though the underlying gene has not been identified. The sr2 locus has been previously mapped to small regions of normal chromosome 10 (N10) and a rearranged variant called abnormal chromosome 10 (Ab10). A comparison of assembled genomes carrying N10 and Ab10 revealed only five candidate sr2 genes. Analysis of a stock carrying the sr2 reference allele (sr2-ref) showed that one of the five genes has a transposon insertion that disrupts its protein sequence and has a severe reduction in mRNA. An independent Mutator transposon insertion in the gene (sr2-Mu) failed to complement the sr2-ref mutation, and plants homozygous for sr2-Mu showed white striped leaf margins. The sr2 gene encodes a DUF3732 protein with strong homology to a rice gene with a similar mutant phenotype called young seedling stripe1 (yss1). These and other published data suggest that sr2 may have a function in plastid gene expression.

玉米条纹叶2(sr2)是一种会导致叶片上出现白色条纹的突变体,几十年来一直被用于图谱研究,但其潜在基因尚未确定。sr2 基因座以前曾被绘制到正常的 10 号染色体(N10)和被称为异常 10 号染色体(Ab10)的重新排列变体的小区域上。对携带 N10 和 Ab10 的组装基因组进行比较后发现,只有五个候选 sr2 基因。对携带 sr2 参考等位基因(sr2-ref)的种群进行的分析表明,五个基因中有一个基因的转座子插入破坏了其蛋白质序列,并导致 mRNA 严重减少。该基因中一个独立的 Mutator 转座子插入(sr2-Mu)未能补充 sr2-ref 突变,同源 sr2-Mu 的植株叶缘呈白色条纹状。sr2 基因编码的 DUF3732 蛋白与具有类似突变体表型的水稻基因幼苗条纹 1(yss1)具有很强的同源性。这些数据和其他已发表的数据表明,sr2 可能具有质粒基因表达的功能。
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引用次数: 0
Salinity inhibits seed germination and embryo growth by reducing starch mobilization efficiency in barley 盐分通过降低大麦的淀粉动员效率抑制种子萌发和胚胎生长
IF 3 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-02-02 DOI: 10.1002/pld3.564
Min Xiong, Jian Xu, Zhou Zhou, Bin Peng, Yuxiang Shen, Huiquan Shen, Xiao Xu, Changya Li, Lina Deng, Gongneng Feng
Barley is one of the world's earliest domesticated crops, which is widely used for beer production, animal feeding, and health care. Barley seed germination, particularly in increasingly saline soils, is key to ensure the safety of crop production. However, the mechanism of salt-affected seed germination in barley remains elusive. Here, two different colored barley varieties were used to independently study the regulation mechanism of salt tolerance during barley seed germination. High salinity delays barley seed germination by slowing down starch mobilization efficiency in seeds. The starch plate test revealed that salinity had a significant inhibitory effect on α-amylase activity in barley seeds. Further, NaCl treatment down-regulated the expression of Amy1, Amy2 and Amy3 genes in germinated seeds, thereby inhibiting α-amylase activity. In addition, the result of embryogenic culture system in vitro showed that the shoot elongation of barley was significantly inhibited by salt stress. These findings indicate that it is a feasible idea to study the regulation mechanism of salinity on barley seed germination and embryo growth from the aspect of starch-related source-sink communication.
大麦是世界上最早驯化的作物之一,被广泛用于啤酒生产、动物饲养和医疗保健。大麦种子的萌发,尤其是在盐碱化日益严重的土壤中的萌发,是确保作物生产安全的关键。然而,大麦种子萌发受盐分影响的机理仍然难以捉摸。本文利用两个不同颜色的大麦品种独立研究了大麦种子萌发过程中耐盐性的调控机制。高盐度会降低种子的淀粉动员效率,从而延迟大麦种子的萌发。淀粉平板试验表明,盐度对大麦种子中的α-淀粉酶活性有显著的抑制作用。此外,NaCl 处理会下调萌发种子中 Amy1、Amy2 和 Amy3 基因的表达,从而抑制α-淀粉酶的活性。此外,体外胚胎培养系统的结果表明,大麦的芽伸长受到盐胁迫的显著抑制。这些研究结果表明,从淀粉相关的源汇通讯方面研究盐胁迫对大麦种子萌发和胚胎生长的调控机制是一个可行的思路。
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引用次数: 0
Enhanced metabolic detoxification is associated with fluroxypyr resistance in Bassia scoparia. Bassia scoparia 的代谢解毒能力增强与氟吡甲禾灵抗性有关。
IF 2.3 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-01-24 eCollection Date: 2024-01-01 DOI: 10.1002/pld3.560
Olivia E Todd, Eric L Patterson, Eric P Westra, Scott J Nissen, André Lucas Simões Araujo, William B Kramer, Franck E Dayan, Todd A Gaines

Auxin-mimic herbicides chemically mimic the phytohormone indole-3-acetic-acid (IAA). Within the auxin-mimic herbicide class, the herbicide fluroxypyr has been extensively used to control kochia (Bassia scoparia). A 2014 field survey for herbicide resistance in kochia populations across Colorado identified a putative fluroxypyr-resistant (Flur-R) population that was assessed for response to fluroxypyr and dicamba (auxin-mimics), atrazine (photosystem II inhibitor), glyphosate (EPSPS inhibitor), and chlorsulfuron (acetolactate synthase inhibitor). This population was resistant to fluroxypyr and chlorsulfuron but sensitive to glyphosate, atrazine, and dicamba. Subsequent dose-response studies determined that Flur-R was 40 times more resistant to fluroxypyr than a susceptible population (J01-S) collected from the same field survey (LD50 720 and 20 g ae ha-1, respectively). Auxin-responsive gene expression increased following fluroxypyr treatment in Flur-R, J01-S, and in a dicamba-resistant, fluroxypyr-susceptible line 9,425 in an RNA-sequencing experiment. In Flur-R, several transcripts with molecular functions for conjugation and transport were constitutively higher expressed, such as glutathione S-transferases (GSTs), UDP-glucosyl transferase (GT), and ATP binding cassette transporters (ABC transporters). After analyzing metabolic profiles over time, both Flur-R and J01-S rapidly converted [14C]-fluroxypyr ester, the herbicide formulation applied to plants, to [14C]-fluroxypyr acid, the biologically active form of the herbicide, and three unknown metabolites. The formation and flux of these metabolites were faster in Flur-R than J01-S, reducing the concentration of phytotoxic fluroxypyr acid. One unique metabolite was present in Flur-R that was not present in the J01-S metabolic profile. Gene sequence variant analysis specifically for auxin receptor and signaling proteins revealed the absence of non-synonymous mutations affecting auxin signaling and binding in candidate auxin target site genes, further supporting our hypothesis that non-target site metabolic degradation is contributing to fluroxypyr resistance in Flur-R.

拟辅酶除草剂通过化学方法模拟植物激素吲哚-3-乙酸(IAA)。在拟辅酶除草剂类别中,除草剂氟吡甲禾灵已被广泛用于控制柯夏(Bassia scoparia)。2014 年对科罗拉多州各地的柯夏种群的除草剂抗性进行了实地调查,发现了一个可能对氟乐灵和麦草畏(模拟助剂)、阿特拉津(光系统 II 抑制剂)、草甘膦(EPSPS 抑制剂)和氯磺隆(乙酰乳酸合成酶抑制剂)具有抗性的种群(Flur-R)。该种群对氟虫腈和氯磺隆具有抗性,但对草甘膦、莠去津和麦草畏敏感。随后的剂量反应研究确定,Flur-R 对氟酰草胺的抗性是同一田间调查收集的易感种群(J01-S)的 40 倍(LD50 分别为 720 和 20 g ae ha-1)。在一项 RNA 测序实验中,Flur-R、J01-S 和抗麦草畏、易感氟xypyr 的品系 9,425 在氟吡草胺处理后,叶绿素反应基因的表达量都有所增加。在 Flur-R 中,几种具有共轭和转运分子功能的转录物(如谷胱甘肽 S-转移酶 (GST)、UDP-葡萄糖基转移酶 (GT) 和 ATP 结合盒转运体 (ABC 转运体) 的组成型表达较高。在分析了随时间变化的代谢曲线后,Flur-R 和 J01-S 都能迅速将施用到植物上的除草剂配方 [14C]-fluroxypyr 酯转化为除草剂的生物活性形式 [14C]-fluroxypyr 酸和三种未知代谢物。这些代谢物在 Flur-R 中的形成和流动速度均快于 J01-S,从而降低了具有植物毒性的氟吡草胺酸的浓度。Flur-R 中存在一种独特的代谢物,而 J01-S 的代谢概况中没有这种代谢物。专门针对辅助素受体和信号转导蛋白的基因序列变异分析表明,候选辅助素靶点基因中不存在影响辅助素信号转导和结合的非同义突变,这进一步支持了我们的假设,即非靶点代谢降解是导致 Flur-R 抗性的原因之一。
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引用次数: 0
A phosphorylation-deficient ribosomal protein eS6 is largely functional in Arabidopsis thaliana, rescuing mutant defects from global translation and gene expression to photosynthesis and growth. 磷酸化缺陷核糖体蛋白 eS6 在拟南芥中基本上是功能性的,它能挽救突变体从全局翻译和基因表达到光合作用和生长的缺陷。
IF 2.3 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-01-19 eCollection Date: 2024-01-01 DOI: 10.1002/pld3.566
Anwesha Dasgupta, Ricardo A Urquidi Camacho, Ramya Enganti, Sung Ki Cho, Lindsey L Tucker, John S Torreverde, Paul E Abraham, Albrecht G von Arnim

The eukaryote-specific ribosomal protein of the small subunit eS6 is phosphorylated through the target of rapamycin (TOR) kinase pathway. Although this phosphorylation event responds dynamically to environmental conditions and has been studied for over 50 years, its biochemical and physiological significance remains controversial and poorly understood. Here, we report data from Arabidopsis thaliana, which indicate that plants expressing only a phospho-deficient isoform of eS6 grow essentially normally under laboratory conditions. The eS6z (RPS6A) paralog of eS6 functionally rescued a double mutant in both rps6a and rps6b genes when expressed at approximately twice the wild-type dosage. A mutant isoform of eS6z lacking the major six phosphorylatable serine and threonine residues in its carboxyl-terminal tail also rescued the lethality, rosette growth, and polyribosome loading of the double mutant. This isoform also complemented many mutant phenotypes of rps6 that were newly characterized here, including photosynthetic efficiency, and most of the gene expression defects that were measured by transcriptomics and proteomics. However, compared with plants rescued with a phospho-enabled version of eS6z, the phospho-deficient seedlings retained a mild pointed-leaf phenotype, root growth was reduced, and certain cell cycle-related mRNAs and ribosome biogenesis proteins were misexpressed. The residual defects of the phospho-deficient seedlings could be understood as an incomplete rescue of the rps6 mutant defects. There was little or no evidence for gain-of-function defects. As previously published, the phospho-deficient eS6z also rescued the rps6a and rps6b single mutants; however, phosphorylation of the eS6y (RPS6B) paralog remained lower than predicted, further underscoring that plants can tolerate phospho-deficiency of eS6 well. Our data also yield new insights into how plants cope with mutations in essential, duplicated ribosomal protein isoforms.

真核细胞特异性核糖体蛋白小亚基 eS6 通过雷帕霉素靶蛋白(TOR)激酶途径发生磷酸化。尽管这一磷酸化过程会对环境条件做出动态响应,并且已经研究了 50 多年,但其生化和生理意义仍存在争议,人们对其了解甚少。在此,我们报告了来自拟南芥的数据,这些数据表明,在实验室条件下,仅表达 eS6 磷酸化缺陷异构体的植株基本上能正常生长。当以大约两倍于野生型的剂量表达时,eS6的eS6z(RPS6A)旁系基因能在功能上挽救rps6a和rps6b基因的双突变体。eS6z 的一个突变异构体在其羧基末端尾部缺乏主要的六个可磷酸化的丝氨酸和苏氨酸残基,它也能挽救双突变体的致死性、莲座状生长和多核糖体负载。该异构体还补充了 rps6 突变体的许多表型,包括光合效率以及转录组学和蛋白质组学测定的大多数基因表达缺陷。然而,与使用磷酸化激活版 eS6z 挽救的植株相比,磷酸化缺陷幼苗保留了轻微的尖叶表型,根系生长减弱,某些与细胞周期相关的 mRNA 和核糖体生物发生蛋白表达错误。缺磷幼苗的残余缺陷可以理解为对 rps6 突变体缺陷的不完全拯救。几乎没有证据表明存在功能增益缺陷。如之前发表的文章所述,磷酸化缺陷的 eS6z 也能挽救 rps6a 和 rps6b 单突变体;然而,eS6y(RPS6B)旁系组的磷酸化程度仍然低于预测值,这进一步强调了植物能很好地耐受 eS6 的磷酸化缺陷。我们的数据还为植物如何应对重要的重复核糖体蛋白同工酶突变提供了新的见解。
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