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Down-regulation of wheat Rubisco activase isoforms expression by virus-induced gene silencing 病毒诱导的基因沉默下调小麦 Rubisco 激活酶同工酶的表达
IF 3 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-04-15 DOI: 10.1002/pld3.583
Juan Alejandro Perdomo, Joanna C. Scales, Wing-Sham Lee, Kostya Kanyuka, Elizabete Carmo-Silva
Rubisco activase (Rca) is an essential photosynthetic enzyme that removes inhibitors from the catalytic sites of the carboxylating enzyme Rubisco. In wheat, Rca is composed of one longer 46 kDa α-isoform and two shorter 42 kDa β-isoforms encoded by the genes TaRca1 and TaRca2. TaRca1 produces a single transcript from which a short 1β-isoform is expressed, whereas two alternative transcripts are generated from TaRca2 directing expression of either a long 2α-isoform or a short 2β-isoform. The 2β isoform is similar but not identical to 1β. Here, virus-induced gene silencing (VIGS) was used to silence the different TaRca transcripts. Abundance of the transcripts and the respective protein isoforms was then evaluated in the VIGS-treated and control plants. Remarkably, treatment with the construct specifically targeting TaRca1 efficiently decreased expression not only of TaRca1 but also of the two alternative TaRca2 transcripts. Similarly, specific targeting of the TaRca2 transcript encoding a long isoform TaRca2α resulted in silencing of both TaRca2 alternative transcripts. The corresponding protein isoforms decreased in abundance. These findings indicate concomitant down-regulation of TaRca1 and TaRca2 at both transcript and protein levels and may impact the feasibility of altering the relative abundance of Rca isoforms in wheat.
Rubisco活化酶(Rca)是一种重要的光合作用酶,它能清除羧化酶Rubisco催化位点上的抑制剂。在小麦中,Rca 由一个较长的 46 kDa α-异构体和两个较短的 42 kDa β-异构体组成,分别由 TaRca1 和 TaRca2 基因编码。TaRca1 产生单个转录本,由其表达短的 1β 异构体,而 TaRca2 则产生两个替代转录本,引导长的 2α 异构体或短的 2β 异构体的表达。2β 异构体与 1β 异构体相似,但不完全相同。在这里,病毒诱导基因沉默(VIGS)被用来沉默不同的 TaRca 转录本。然后在 VIGS 处理过的植株和对照植株中评估了转录本和各自蛋白质同工酶的丰度。值得注意的是,用特异性靶向 TaRca1 的构建质粒处理后,不仅有效地降低了 TaRca1 的表达量,还降低了两个替代的 TaRca2 转录本的表达量。同样,特异性靶向编码长异构体 TaRca2α 的 TaRca2 转录本也导致两个 TaRca2 替代转录本沉默。相应的蛋白质异构体的丰度下降。这些发现表明,TaRca1 和 TaRca2 在转录本和蛋白质水平上同时出现了下调,可能会影响改变小麦中 Rca 异构体相对丰度的可行性。
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引用次数: 0
Screening of leaf extraction and storage conditions for eco‐metabolomics studies 为生态代谢组学研究筛选叶片提取和储存条件
IF 3 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-04-10 DOI: 10.1002/pld3.578
Jakob Lang, Sergio E. Ramos, Marharyta Smohunova, Laurent Bigler, Meredith C. Schuman
Mass spectrometry‐based plant metabolomics is frequently used to identify novel natural products or study the effect of specific treatments on a plant's metabolism. Reliable sample handling is required to avoid artifacts, which is why most protocols mandate shock freezing of plant tissue in liquid nitrogen and an uninterrupted cooling chain. However, the logistical challenges of this approach make it infeasible for many ecological studies. Especially for research in the tropics, permanent cooling poses a challenge, which is why many of those studies use dried leaf tissue instead. We screened a total of 10 extraction and storage approaches for plant metabolites extracted from maize leaf tissue across two cropping seasons to develop a methodology for agroecological studies in logistically challenging tropical locations. All methods were evaluated based on changes in the metabolite profile across a 2‐month storage period at different temperatures with the goal of reproducing the metabolite profile of the living plant as closely as possible. We show that our newly developed on‐site liquid–liquid extraction protocol provides a good compromise between sample replicability, extraction efficiency, material logistics, and metabolite profile stability. We further discuss alternative methods which showed promising results and feasibility of on‐site sample handling for field studies.
基于质谱的植物代谢组学常用于鉴定新型天然产物或研究特定处理对植物代谢的影响。为避免伪影,需要可靠的样品处理,这就是为什么大多数方案都要求将植物组织置于液氮中震荡冷冻,并建立不间断的冷却链。然而,这种方法在后勤方面的挑战使得它在许多生态研究中并不可行。特别是对于热带地区的研究来说,永久冷却是一个挑战,这也是许多研究使用干燥叶片组织代替的原因。我们共筛选了 10 种从玉米叶片组织中提取植物代谢物的提取和储存方法,这些方法跨越了两个种植季节,目的是为热带地区具有后勤挑战性的农业生态研究开发一种方法。所有方法都是根据在不同温度下储存 2 个月期间代谢物特征的变化进行评估的,目的是尽可能再现活体植物的代谢物特征。我们的研究表明,我们新开发的现场液-液萃取方案在样品的可复制性、萃取效率、材料物流和代谢物图谱的稳定性之间实现了良好的折中。我们还进一步讨论了其他方法,这些方法显示出了良好的效果以及现场样品处理在野外研究中的可行性。
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引用次数: 0
Root hydraulic properties: An exploration of their variability across scales 根系水力特性:探索其在不同尺度上的可变性
IF 3 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-04-08 DOI: 10.1002/pld3.582
Juan C. Baca Cabrera, Jan Vanderborght, Valentin Couvreur, Dominik Behrend, Thomas Gaiser, Thuy Huu Nguyen, Guillaume Lobet
Root hydraulic properties are key physiological traits that determine the capacity of root systems to take up water, at a specific evaporative demand. They can strongly vary among species, cultivars or even within the same genotype, but a systematic analysis of their variation across plant functional types (PFTs) is still missing. Here, we reviewed published empirical studies on root hydraulic properties at the segment‐, individual root‐, or root system scale and determined its variability and the main factors contributing to it. This corresponded to a total of 241 published studies, comprising 213 species, including woody and herbaceous vegetation.We observed an extremely large range of variation (of orders of magnitude) in root hydraulic properties, but this was not caused by systematic differences among PFTs. Rather, the (combined) effect of factors such as root system age, driving force used for measurement, or stress treatments shaped the results. We found a significant decrease in root hydraulic properties under stress conditions (drought and aquaporin inhibition, p < .001) and a significant effect of the driving force used for measurement (hydrostatic or osmotic gradients, p < .001). Furthermore, whole root system conductance increased significantly with root system age across several crop species (p < .01), causing very large variation in the data (>2 orders of magnitude). Interestingly, this relationship showed an asymptotic shape, with a steep increase during the first days of growth and a flattening out at later stages of development. We confirmed this dynamic through simulations using a state‐of‐the‐art computational model of water flow in the root system for a variety of crop species, suggesting common patterns across studies and species.These findings provide better understanding of the main causes of root hydraulic properties variations observed across empirical studies. They also open the door to better representation of hydraulic processes across multiple plant functional types and at large scales. All data collected in our analysis has been aggregated into an open access database (https://roothydraulic-properties.shinyapps.io/database/), fostering scientific exchange.
根系水力特性是决定根系在特定蒸发需求下吸收水分能力的关键生理特性。不同物种、不同栽培品种甚至同一基因型之间的根系水力特性都会有很大差异,但对不同植物功能类型(PFTs)之间根系水力特性差异的系统分析仍然缺失。在此,我们回顾了已发表的有关根系水力特性的实证研究,包括根段、单根或根系尺度的研究,并确定了其变异性及其主要影响因素。我们观察到根系水力特性的变化范围(数量级)非常大,但这并不是由 PFT 之间的系统性差异造成的。相反,根系年龄、测量所用的驱动力或应力处理等因素的(综合)影响左右了结果。我们发现,在胁迫条件下(干旱和水蒸素抑制,p <.001),根系的水力特性明显下降,而且测量所用的驱动力(静水压或渗透梯度,p <.001)也有明显影响。此外,在多个作物品种中,整个根系的电导率随根系年龄的增长而显著增加(p <.01),导致数据差异非常大(2 个数量级)。有趣的是,这种关系呈现出一种渐近线的形状,在生长的最初几天急剧增加,而在生长后期则趋于平缓。我们使用最先进的计算模型对多种作物根系中的水流进行了模拟,证实了这一动态,表明不同研究和物种之间存在共同的模式。这些发现让我们更好地理解了实证研究中观察到的根系水力特性差异的主要原因,同时也为更好地反映多种植物功能类型和大尺度的水力过程打开了大门。我们在分析过程中收集的所有数据都已汇总到一个开放的数据库(https://roothydraulic-properties.shinyapps.io/database/)中,以促进科学交流。
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引用次数: 0
Cultivated sunflower (Helianthus annuus L.) has lower tolerance of moderate drought stress than its con‐specific wild relative, but the underlying traits remain elusive 栽培向日葵(Helianthus annuus L.)对中度干旱胁迫的耐受性低于同种野生向日葵,但其基本特性仍然难以捉摸
IF 3 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-04-05 DOI: 10.1002/pld3.581
Vivian H. Tran, Kristen M. Nolting, Lisa A. Donovan, Andries A. Temme
Cultivated crops are generally expected to have less abiotic stress tolerance than their wild relatives. However, this assumption is not well supported by empirical literature and may depend on the type of stress and how it is imposed, as well as the measure of tolerance being used. Here, we investigated whether wild and cultivated accessions of Helianthus annuus differed in stress tolerance assessed as proportional decline in biomass due to drought and whether wild and cultivated accessions differed in trait responses to drought and trait associations with tolerance. In a greenhouse study, H. annuus accessions in the two domestication classes (eight cultivated and eight wild accessions) received two treatments: a well‐watered control and a moderate drought implemented as a dry down followed by maintenance at a predetermined soil moisture level with automated irrigation. Treatments were imposed at the seedling stage, and plants were harvested after 2 weeks of treatment. The proportional biomass decline in response to drought was 24% for cultivated H. annuus accessions but was not significant for the wild accessions. Thus, using the metric of proportional biomass decline, the cultivated accessions had less drought tolerance. Among accessions, there was no tradeoff between drought tolerance and vigor assessed as biomass in the control treatment. In a multivariate analysis, wild and cultivated accessions did not differ from each other or in response to drought for a subset of morphological, physiological, and allocational traits. Analyzed individually, traits varied in response to drought in wild and/or cultivated accessions, including declines in specific leaf area, leaf theoretical maximum stomatal conductance (gsmax), and stomatal pore length, but there was no treatment response for stomatal density, succulence, or the ability to osmotically adjust. Focusing on traits associations with tolerance, plasticity in gsmax was the most interesting because its association with tolerance differed by domestication class (although the effects were relatively weak) and thus might contribute to lower tolerance of cultivated sunflower. Our H. annuus results support the expectation that stress tolerance is lower in crops than wild relatives under some conditions. However, determining the key traits that underpin differences in moderate drought tolerance between wild and cultivated H. annuus remains elusive.
一般认为,与野生近缘植物相比,栽培作物对非生物胁迫的耐受力较弱。然而,这一假设并没有得到实证文献的充分支持,而且可能取决于胁迫的类型和施加方式,以及所使用的耐受性衡量标准。在此,我们研究了Helianthus annuus的野生和栽培品种在抗逆性方面是否存在差异,抗逆性是指干旱导致生物量下降的比例,以及野生和栽培品种在对干旱的性状反应和性状与抗逆性的关联方面是否存在差异。在一项温室研究中,两个驯化等级的鹅掌楸品种(8 个栽培品种和 8 个野生品种)接受了两种处理:水分充足的对照组和中度干旱组,中度干旱组是在干枯后通过自动灌溉将土壤水分维持在预定水平。处理在幼苗期进行,植物在处理两周后收获。栽培品种对干旱的生物量下降比例为 24%,而野生品种的下降比例并不明显。因此,用生物量下降比例来衡量,栽培品种的耐旱性较差。在对照处理中,耐旱性与以生物量评估的活力之间没有权衡。在多元分析中,野生品种和栽培品种在形态、生理和分配性状方面没有差异,对干旱的反应也没有差异。单独分析发现,野生和/或栽培品种的性状对干旱的反应各不相同,包括比叶面积、叶片理论最大气孔导度(gsmax)和气孔孔隙长度的下降,但气孔密度、多汁性或渗透调节能力没有处理反应。从性状与耐受性的关系来看,gsmax 的可塑性最令人感兴趣,因为它与耐受性的关系因驯化等级而异(尽管影响相对较弱),因此可能导致栽培向日葵的耐受性较低。我们对向日葵的研究结果表明,在某些条件下,农作物的抗逆性低于野生近缘植物。然而,确定野生向日葵和栽培向日葵之间中等耐旱性差异的关键性状仍是一个未知数。
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引用次数: 0
A K homology (KH) domain protein identified by a forward genetic screen affects bundle sheath anatomy in Arabidopsis thaliana 通过正向遗传筛选确定的 K 同源(KH)结构域蛋白会影响拟南芥的束鞘解剖结构
IF 3 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-04-03 DOI: 10.1002/pld3.577
Zahida Bano, Peter Westhoff
Because of their photosynthetic capacity, leaves function as solar panels providing the basis for the growth of the entire plant. Although the molecular mechanisms of leaf development have been well studied in model dicot and monocot species, a lot of information is still needed about the interplay of the genes that regulate cell division and differentiation and thereby affect the photosynthetic performance of the leaf. We were specifically interested in understanding the differentiation of mesophyll and bundle sheath cells in Arabidopsis thaliana and aimed to identify genes that are involved in determining bundle sheath anatomy. To this end, we established a forward genetic screen by using ethyl methanesulfonate (EMS) for mutagenizing a reporter line expressing a chloroplast‐targeted green fluorescent protein (sGFP) under the control of a bundle sheath‐specific promoter. Based on the GFP fluorescence phenotype, numerous mutants were produced, and by pursuing a mapping‐by‐sequencing approach, the genomic segments containing mutated candidate genes were identified. One of the lines with an enhanced GFP fluorescence phenotype (named ELEVATED BUNDLE SHEATH CELLS SIGNAL 1 [ebss1]) was selected for further study, and the responsible gene was verified by CRISPR/Cas9‐based mutagenesis of candidate genes located in the mapped genomic segment. The verified gene, At2g25970, encodes a K homology (KH) domain‐containing protein.
由于叶片具有光合作用能力,因此叶片就像太阳能电池板一样,为整个植物的生长提供了基础。虽然在双子叶和单子叶植物中对叶片发育的分子机制进行了深入研究,但对于调控细胞分裂和分化并进而影响叶片光合作用性能的基因之间的相互作用,仍有许多信息需要了解。我们特别想了解拟南芥叶肉细胞和束鞘细胞的分化过程,目的是找出参与决定束鞘解剖结构的基因。为此,我们利用甲基磺酸乙酯(EMS)诱变表达叶绿体靶向绿色荧光蛋白(sGFP)的报告基因系,并在束鞘特异性启动子的控制下建立了正向遗传筛选。根据 GFP 荧光表型,产生了许多突变体,并通过测序映射方法确定了含有突变候选基因的基因组片段。其中一个具有增强 GFP 荧光表型的品系(命名为 ELEVATED BUNDLE SHEATH CELLS SIGNAL 1 [ebss1])被选中作进一步研究,并通过基于 CRISPR/Cas9 诱变位于映射基因组片段的候选基因来验证责任基因。经过验证的基因 At2g25970 编码一个含 K 同源(KH)结构域的蛋白质。
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引用次数: 0
A core of cell wall proteins functions in wall integrity responses in Arabidopsis thaliana 拟南芥细胞壁蛋白核心在细胞壁完整性反应中发挥作用
IF 3 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-04-03 DOI: 10.1002/pld3.579
Oyeyemi Ajayi, Ellen Zelinsky, Charles T. Anderson
Cell walls surround all plant cells, and their composition and structure are tightly regulated to maintain cellular and organismal homeostasis. In response to wall damage, the cell wall integrity (CWI) system is engaged to ameliorate effects on plant growth. Despite the central role CWI plays in plant development, our current understanding of how this system functions at the molecular level is limited. Here, we investigated the transcriptomes of etiolated seedlings of mutants of Arabidopsis thaliana with defects in three major wall polysaccharides, pectin (quasimodo2), cellulose (cellulose synthase3je5), and xyloglucan (xyloglucan xylosyltransferase1 and 2), to probe whether changes in the expression of cell wall‐related genes occur and are similar or different when specific wall components are reduced or missing. Many changes occurred in the transcriptomes of pectin‐ and cellulose‐deficient plants, but fewer changes occurred in the transcriptomes of xyloglucan‐deficient plants. We hypothesize that this might be because pectins interact with other wall components and/or integrity sensors, whereas cellulose forms a major load‐bearing component of the wall; defects in either appear to trigger the expression of structural proteins to maintain wall cohesion in the absence of a major polysaccharide. This core set of genes functioning in CWI in plants represents an attractive target for future genetic engineering of robust and resilient cell walls.
细胞壁环绕着所有植物细胞,其组成和结构受到严格调控,以维持细胞和生物体的平衡。为应对细胞壁损伤,细胞壁完整性(CWI)系统会发挥作用,以改善对植物生长的影响。尽管 CWI 在植物生长过程中发挥着核心作用,但我们目前对该系统如何在分子水平上发挥作用的了解却很有限。在这里,我们研究了拟南芥果胶(quasimodo2)、纤维素(纤维素合成酶3je5)和木聚糖(木聚糖木糖基转移酶1和2)三种主要壁多糖缺陷突变体幼苗叶绿体的转录组,以探究当特定壁成分减少或缺失时,细胞壁相关基因的表达是否会发生变化,以及变化是相似还是不同。果胶和纤维素缺乏植物的转录组发生了许多变化,但木糖缺乏植物的转录组发生的变化较少。我们推测这可能是因为果胶与其他壁成分和/或完整性传感器相互作用,而纤维素则是壁的主要承重成分;其中任何一种成分的缺陷似乎都会引发结构蛋白的表达,从而在缺乏主要多糖的情况下维持壁的内聚力。这组在植物 CWI 中起作用的核心基因是未来对坚固而有弹性的细胞壁进行基因工程改造的一个有吸引力的目标。
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引用次数: 0
Antagonistic functions of CTL1 and SUH1 mediate cell wall assembly in Arabidopsis 拟南芥中 CTL1 和 SUH1 介导细胞壁组装的拮抗功能
IF 3 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-03-23 DOI: 10.1002/pld3.580
Nguyen Thi Thuy, Hyun‐Jung Kim, Suk‐Whan Hong
Plant genomes contain numerous genes encoding chitinase‐like (CTL) proteins, which have a similar protein structure to chitinase belonging to the glycoside hydrolase (GH) family but lack the chitinolytic activity to cleave the β‐1,4‐glycosidic bond in chitins, polymers of N‐acetylglucosamine. CTL1 mutations found in rice and Arabidopsis have caused pleiotropic developmental defects, including altered cell wall composition and decreased abiotic stress tolerance, likely due to reduced cellulose content. In this study, we identified suppressor of hot2 1 (suh1) as a genetic suppressor of the ctl1hot2‐1 mutation in Arabidopsis. The mutation in SUH1 restored almost all examined ctl1hot2‐1 defects to nearly wild‐type levels or at least partially. SUH1 encodes a Golgi‐located type II membrane protein with glycosyltransferase (GT) activity, and its mutations lead to a reduction in cellulose content and hypersensitivity to cellulose biosynthesis inhibitors, although to a lesser extent than ctl1hot2‐1 mutation. The SUH1 promoter fused with the GUS reporter gene exhibited GUS activity in interfascicular fibers and xylem in stems; meanwhile, the ctl1hot2‐1 mutation significantly increased this activity. Our findings provide genetic and molecular evidence that the antagonistic activities of CTL1 and SUH1 play an essential role in assembling the cell wall in Arabidopsis.
植物基因组中含有许多编码几丁质酶样蛋白(CTL)的基因,这些蛋白的结构与属于糖苷水解酶(GH)家族的几丁质酶相似,但缺乏几丁质分解活性,不能裂解几丁质(N-乙酰葡糖胺的聚合物)中的β-1,4-糖苷键。在水稻和拟南芥中发现的 CTL1 突变导致了多向性发育缺陷,包括细胞壁组成改变和非生物胁迫耐受性降低,这可能是由于纤维素含量减少所致。在这项研究中,我们发现拟南芥中的 hot2 1 抑制因子(suh1)是ctl1hot2-1 突变的遗传抑制因子。SUH1的突变使几乎所有检测到的ctl1hot2-1缺陷恢复到接近野生型水平或至少部分恢复。SUH1编码一种具有糖基转移酶(GT)活性的位于高尔基位置的II型膜蛋白,其突变导致纤维素含量减少和对纤维素生物合成抑制剂的过敏性,但程度低于ctl1hot2-1突变。与 GUS 报告基因融合的 SUH1 启动子在茎的束间纤维和木质部中表现出 GUS 活性;与此同时,ctl1hot2-1 突变显著增加了这种活性。我们的研究结果提供了遗传和分子证据,证明 CTL1 和 SUH1 的拮抗活性在拟南芥细胞壁的组装过程中起着至关重要的作用。
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引用次数: 0
Target-site mutations Ile1781Leu and Ile2041Asn in the ACCase2 gene confer resistance to fluazifop-p-butyl and pinoxaden herbicides in a johnsongrass accession from Arkansas, USA. ACCase2 基因中的靶位突变 Ile1781Leu 和 Ile2041Asn 使美国阿肯色州的一种琼草对氟唑草酯和嗪草酮除草剂产生抗性。
IF 2.3 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-03-21 eCollection Date: 2024-03-01 DOI: 10.1002/pld3.576
Fidel González-Torralva, Jason K Norsworthy

Johnsongrass [Sorghum halepense (L.) Pers.] is a troublesome weed species in different agricultural and non-agricultural areas. Because of its biology, reproductive system, and seed production, effective management is challenging. An accession with low susceptibility to the acetyl-CoA carboxylase (ACCase)-inhibiting herbicides fluazifop-p-butyl (fluazifop) and pinoxaden was collected in eastern Arkansas. In this research, the molecular mechanisms responsible for ACCase resistance were investigated. Dose-response experiments showed a resistance factor of 181 and 133 for fluazifop and pinoxaden, respectively. Molecular analysis of both ACCase1 and ACCase2 genes was researched. Nucleotide comparison of ACCase1 between resistant and susceptible accessions showed no single nucleotide polymorphisms. Nonetheless, analysis of ACCase2 in fluazifop-resistant johnsongrass plants revealed the Ile1781Leu target-site mutation was dominant (nearly 75%), whereas the majority of pinoxaden-resistant johnsongrass plants had the Ile2041Asn (60%). Not all sequenced johnsongrass plants displayed a target-site mutation, suggesting the presence of additional resistance mechanisms. Amplification of ACCase1 and ACCase2 was not responsible for resistance because of the similar values obtained in both resistant and susceptible accessions. Experiments with malathion and NBD-Cl suggest the presence of herbicide metabolism. Outcomes of this research demonstrated that fluazifop- and pinoxaden-resistant johnsongrass plants displayed a target-site mutation in ACCase2, but also that non-target-site resistance mechanisms would be involved and require a detailed study.

约翰逊草(Sorghum halepense (L.) Pers.)是不同农业和非农业地区的一种棘手杂草。由于其生物学特性、繁殖系统和种子生产,有效管理具有挑战性。在阿肯色州东部采集到了一种对乙酰-CoA 羧化酶(ACCase)抑制性除草剂氟唑草酮(fluazifop-p-butyl)和嗪草酮(pinoxaden)敏感性较低的杂草。这项研究调查了导致 ACCase 抗性的分子机制。剂量-反应实验显示,氟唑草酯和嗪草酮的抗性系数分别为 181 和 133。研究人员对 ACCase1 和 ACCase2 基因进行了分子分析。对抗性和易感性品种的 ACCase1 基因进行核苷酸比较后发现,没有发现单核苷酸多态性。然而,对抗氟唑草胺的约翰逊草植株中的 ACCase2 基因进行分析后发现,Ile1781Leu 目标位点突变是显性突变(近 75%),而大多数抗松果菊酯的约翰逊草植株的目标位点突变是 Ile2041Asn(60%)。并非所有测序的约翰逊草植株都出现了靶位突变,这表明还存在其他抗性机制。ACCase1 和 ACCase2 的扩增不是产生抗性的原因,因为抗性和易感品种的抗性值相似。马拉硫磷和 NBD-Cl 的实验表明存在除草剂代谢。研究结果表明,对氟唑草胺和松草胺有抗性的琼草植物显示出 ACCase2 的靶位突变,但也可能涉及非靶位抗性机制,需要进行详细研究。
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引用次数: 0
Combining extracellular matrix proteome and phosphoproteome of chickpea and meta-analysis reveal novel proteoforms and evolutionary significance of clade-specific wall-associated events in plant 结合鹰嘴豆的细胞外基质蛋白质组和磷酸蛋白质组以及荟萃分析,揭示植物中新的蛋白质形式和支系特异性壁相关事件的进化意义
IF 3 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-03-18 DOI: 10.1002/pld3.572
Kanika Narula, Arunima Sinha, Pooja Choudhary, Sudip Ghosh, Eman Elagamey, Archana Sharma, Atreyee Sengupta, Niranjan Chakraborty, Subhra Chakraborty
Extracellular matrix (ECM) plays central roles in cell architecture, innate defense and cell wall integrity (CWI) signaling. During transition to multicellularity, modular domain structures of ECM proteins and proteoforms have evolved due to continuous adaptation across taxonomic clades under different ecological niche. Although this incredible diversity has to some extent been investigated at protein level, extracellular phosphorylation events and molecular evolution of ECM proteoform families remains unexplored. We developed matrisome proteoform atlas in a grain legume, chickpea and performed meta-analyses of 74 plant matrisomes. MS/MS analysis identified 1,424 proteins and 315 phosphoproteins involved in diverse functions. Cross-species ECM protein network identified proteoforms associated with CWI maintenance system. Phylogenetic characterization of eighteen matrix protein families highlighted the role of taxon-specific paralogs and orthologs. Novel information was acquired on gene expansion and loss, co-divergence, sub functionalization and neofunctionalization during evolution. Modular networks of matrix protein families and hub proteins showed higher diversity across taxonomic clades than among organs. Furthermore, protein families differ in nonsynonymous to synonymous substitution rates. Our study pointed towards the matrix proteoform functionality, sequence divergence variation, interactions between wall remodelers and molecular evolution using a phylogenetic framework. This is the first report on comprehensive matrisome proteoform network illustrating presence of CWI signaling proteins in land plants.
细胞外基质(ECM)在细胞结构、先天防御和细胞壁完整性(CWI)信号传导中发挥着核心作用。在向多细胞过渡的过程中,ECM 蛋白的模块化结构域和蛋白形式在不同生态位的分类支系中不断适应进化。尽管在蛋白质水平上对这种令人难以置信的多样性进行了一定程度的研究,但细胞外磷酸化事件和 ECM 蛋白形态家族的分子进化仍未得到探索。我们开发了谷类豆科植物鹰嘴豆的基质组蛋白形态图谱,并对 74 种植物基质组进行了元分析。MS/MS 分析确定了 1,424 种蛋白质和 315 种磷蛋白,它们涉及不同的功能。跨物种 ECM 蛋白网络确定了与 CWI 维护系统相关的蛋白形式。18 个基质蛋白家族的系统发育特征突显了类群特异性旁系亲属和直系亲属的作用。在进化过程中,获得了有关基因扩增和丢失、共分化、亚功能化和新功能化的新信息。基质蛋白家族和枢纽蛋白的模块化网络在不同分类支系之间显示出比器官之间更高的多样性。此外,蛋白质家族的非同义替换率与同义替换率也有所不同。我们的研究利用系统发生学框架指出了基质蛋白的功能、序列差异变化、壁重塑因子之间的相互作用以及分子进化。这是首次报道全面的基质蛋白形式网络,说明了陆生植物中 CWI 信号蛋白的存在。
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引用次数: 0
Light quality-dependent roles of REVEILLE proteins in the circadian system. REVEILLE 蛋白在昼夜节律系统中的作用取决于光质。
IF 2.3 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-03-13 eCollection Date: 2024-03-01 DOI: 10.1002/pld3.573
Cassandra L Hughes, Yuyan An, Julin N Maloof, Stacey L Harmer

Several closely related Myb-like activator proteins are known to have partially redundant functions within the plant circadian clock, but their specific roles are not well understood. To clarify the function of the REVEILLE 4, REVEILLE 6, and REVEILLE 8 transcriptional activators, we characterized the growth and clock phenotypes of CRISPR-Cas9-generated single, double, and triple rve mutants. We found that these genes act synergistically to regulate flowering time, redundantly to regulate leaf growth, and antagonistically to regulate hypocotyl elongation. We previously reported that increasing intensities of monochromatic blue and red light have opposite effects on the period of triple rve468 mutants. Here, we further examined light quality-specific phenotypes of rve mutants and report that rve468 mutants lack the blue light-specific increase in expression of some circadian clock genes observed in wild type. To investigate the basis of these blue light-specific circadian phenotypes, we examined RVE protein abundances and degradation rates in blue and red light and found no significant differences between these conditions. We next examined genetic interactions between RVE genes and ZEITLUPE and ELONGATED HYPOCOTYL5, two factors with blue light-specific functions in the clock. We found that the RVEs interact additively with both ZEITLUPE and ELONGATED HYPOCOTYL5 to regulate circadian period, which suggests that neither of these factors are required for the blue light-specific differences that we observed. Overall, our results suggest that the RVEs have separable functions in plant growth and circadian regulation and that they are involved in blue light-specific circadian signaling via a novel mechanism.

已知几种密切相关的类 Myb 激活蛋白在植物昼夜节律时钟中具有部分冗余功能,但它们的具体作用尚不十分清楚。为了明确 REVEILLE 4、REVEILLE 6 和 REVEILLE 8 转录激活因子的功能,我们对 CRISPR-Cas9 生成的单、双和三重 rve 突变体的生长和时钟表型进行了鉴定。我们发现,这些基因在调节开花时间方面起协同作用,在调节叶片生长方面起冗余作用,在调节下胚轴伸长方面起拮抗作用。我们以前曾报道,增加单色蓝光和红光的强度对三重 rve468 突变体的花期有相反的影响。在这里,我们进一步研究了 rve 突变体的光质特异性表型,并报告说 rve468 突变体缺乏野生型中观察到的某些昼夜节律钟基因表达的蓝光特异性增加。为了研究这些蓝光特异性昼夜节律表型的基础,我们检测了蓝光和红光下的 RVE 蛋白丰度和降解率,结果发现这两种条件下的 RVE 蛋白丰度和降解率没有显著差异。接下来,我们研究了 RVE 基因与 ZEITLUPE 和 ELONGATED HYPOCOTYL5 之间的遗传相互作用。我们发现,RVE 基因与 ZEITLUPE 和 ELONGATED HYPOCOTYL5 之间的相互作用是相加的,共同调节昼夜节律周期,这表明我们观察到的蓝光特异性差异并不需要这两个因子。总之,我们的研究结果表明,RVEs 在植物生长和昼夜节律调节中具有可分离的功能,而且它们通过一种新的机制参与了蓝光特异性昼夜节律信号转导。
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引用次数: 0
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Plant Direct
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