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Morphological evolution of language-relevant brain areas. 与语言相关的大脑区域的形态学进化。
IF 9.8 1区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-09-01 DOI: 10.1371/journal.pbio.3002266
Guillermo Gallardo, Cornelius Eichner, Chet C Sherwood, William D Hopkins, Alfred Anwander, Angela D Friederici

Human language is supported by a cortical network involving Broca's area, which comprises Brodmann Areas 44 and 45 (BA44 and BA45). While cytoarchitectonic homolog areas have been identified in nonhuman primates, it remains unknown how these regions evolved to support human language. Here, we use histological data and advanced cortical registration methods to precisely compare the morphology of BA44 and BA45 in humans and chimpanzees. We found a general expansion of Broca's areas in humans, with the left BA44 enlarging the most, growing anteriorly into a region known to process syntax. Together with recent functional and receptorarchitectural studies, our findings support the conclusion that BA44 evolved from an action-related region to a bipartite system, with a posterior portion supporting action and an anterior portion supporting syntactic processes. Our findings add novel insights to the longstanding debate on the relationship between language and action, and the evolution of Broca's area.

人类语言由涉及布罗卡区的皮层网络支持,该皮层网络包括布罗德曼44区和45区(BA44和BA45)。虽然在非人类灵长类动物中已经发现了细胞结构同源区,但这些区域是如何进化来支持人类语言的,目前尚不清楚。在这里,我们使用组织学数据和先进的皮层配准方法来精确比较人类和黑猩猩的BA44和BA45的形态。我们发现人类的Broca区域普遍扩大,其中左侧BA44扩大最大,向前生长到一个已知处理语法的区域。结合最近的功能和受体结构研究,我们的发现支持了这样一个结论,即BA44从一个动作相关区域进化为一个二分系统,后部支持动作,前部支持句法过程。我们的发现为长期以来关于语言和行动之间关系以及布罗卡地区演变的争论增添了新的见解。
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引用次数: 2
Functional geometry of auditory cortical resting state networks derived from intracranial electrophysiology. 源自颅内电生理学的听觉皮层静息状态网络的功能几何结构。
IF 9.8 1区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-08-31 eCollection Date: 2023-08-01 DOI: 10.1371/journal.pbio.3002239
Matthew I Banks, Bryan M Krause, D Graham Berger, Declan I Campbell, Aaron D Boes, Joel E Bruss, Christopher K Kovach, Hiroto Kawasaki, Mitchell Steinschneider, Kirill V Nourski
Understanding central auditory processing critically depends on defining underlying auditory cortical networks and their relationship to the rest of the brain. We addressed these questions using resting state functional connectivity derived from human intracranial electroencephalography. Mapping recording sites into a low-dimensional space where proximity represents functional similarity revealed a hierarchical organization. At fine scale, a group of auditory cortical regions excluded several higher order auditory areas and segregated maximally from prefrontal cortex. On mesoscale, the proximity of limbic structures to auditory cortex suggested a limbic stream that parallels the classically described ventral and dorsal auditory processing streams. Identities of global hubs in anterior temporal and cingulate cortex depended on frequency band, consistent with diverse roles in semantic and cognitive processing. On a macro scale, observed hemispheric asymmetries were not specific for speech and language networks. This approach can be applied to multivariate brain data with respect to development, behavior, and disorders. Blurb We describe the organization of human neocortex on multiple spatial scalesbased on resting state intracranial electrophysiology. We focus on cortical regions involved in auditory processing and examine inter-regional hierarchical relationships, network topology, and hemispheric lateralization. This work introduces a powerful analytical tool to examine mechanisms of altered arousal states, brain development, and neuropsychiatric disorders.
理解中枢听觉处理至关重要地取决于定义潜在的听觉皮层网络及其与大脑其他部分的关系。我们使用来自人类颅内脑电图的静息状态功能连接来解决这些问题。将记录地点映射到一个低维空间中,在该空间中,邻近性表示功能相似性,从而揭示了一个层次结构。在精细尺度上,一组听觉皮层区域排除了几个高级听觉区域,并与前额叶皮层最大程度地分离。在中尺度上,边缘结构与听觉皮层的接近表明边缘流与经典描述的腹侧和背侧听觉处理流相似。颞前皮层和扣带皮层全局中枢的身份取决于频带,与语义和认知处理中的不同作用一致。在宏观尺度上,观察到的半球不对称并不是语音和语言网络特有的。这种方法可以应用于关于发育、行为和障碍的多变量大脑数据。
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引用次数: 2
Autism-related KLHL17 and SYNPO act in concert to control activity-dependent dendritic spine enlargement and the spine apparatus. 自闭症相关的KLHL17和SYNPO共同控制活动依赖性树突棘增大和棘器。
IF 9.8 1区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-08-31 eCollection Date: 2023-08-01 DOI: 10.1371/journal.pbio.3002274
Hsiao-Tang Hu, Yung-Jui Lin, Ueh-Ting Tim Wang, Sue-Ping Lee, Yae-Huei Liou, Bi-Chang Chen, Yi-Ping Hsueh

Dendritic spines, the tiny and actin-rich protrusions emerging from dendrites, are the subcellular locations of excitatory synapses in the mammalian brain that control synaptic activity and plasticity. Dendritic spines contain a specialized form of endoplasmic reticulum (ER), i.e., the spine apparatus, required for local calcium signaling and that is involved in regulating dendritic spine enlargement and synaptic plasticity. Many autism-linked genes have been shown to play critical roles in synaptic formation and plasticity. Among them, KLHL17 is known to control dendritic spine enlargement during development. As a brain-specific disease-associated gene, KLHL17 is expected to play a critical role in the brain, but it has not yet been well characterized. In this study, we report that KLHL17 expression in mice is strongly regulated by neuronal activity and KLHL17 modulates the synaptic distribution of synaptopodin (SYNPO), a marker of the spine apparatus. Both KLHL17 and SYNPO are F-actin-binding proteins linked to autism. SYNPO is known to maintain the structure of the spine apparatus in mature spines and contributes to synaptic plasticity. Our super-resolution imaging using expansion microscopy demonstrates that SYNPO is indeed embedded into the ER network of dendritic spines and that KLHL17 is closely adjacent to the ER/SYNPO complex. Using mouse genetic models, we further show that Klhl17 haploinsufficiency and knockout result in fewer dendritic spines containing ER clusters and an alteration of calcium events at dendritic spines. Accordingly, activity-dependent dendritic spine enlargement and neuronal activation (reflected by extracellular signal-regulated kinase (ERK) phosphorylation and C-FOS expression) are impaired. In addition, we show that the effect of disrupting the KLHL17 and SYNPO association is similar to the results of Klhl17 haploinsufficiency and knockout, further strengthening the evidence that KLHL17 and SYNPO act together to regulate synaptic plasticity. In conclusion, our findings unravel a role for KLHL17 in controlling synaptic plasticity via its regulation of SYNPO and synaptic ER clustering and imply that impaired synaptic plasticity contributes to the etiology of KLHL17-related disorders.

树突棘是树突中出现的富含肌动蛋白的微小突起,是哺乳动物大脑中控制突触活动和可塑性的兴奋性突触的亚细胞位置。树突棘包含一种特殊形式的内质网(ER),即棘器,是局部钙信号传导所需的,参与调节树突棘增大和突触可塑性。许多与自闭症相关的基因已被证明在突触形成和可塑性中发挥着关键作用。其中,已知KLHL17在发育过程中控制树突棘增大。作为一种脑特异性疾病相关基因,KLHL17有望在大脑中发挥关键作用,但尚未得到很好的表征。在这项研究中,我们报道了KLHL17在小鼠中的表达受到神经元活动的强烈调节,并且KLHL17调节突触足蛋白(SYNPO)的突触分布,SYNPO是脊椎装置的标志物。KLHL17和SYNPO都是与自闭症相关的F-肌动蛋白结合蛋白。已知SYNPO可维持成熟脊柱的脊柱结构,并有助于突触可塑性。我们使用膨胀显微镜进行的超分辨率成像表明,SYNPO确实嵌入了树突棘的ER网络中,并且KLHL17与ER/SYNPO复合物紧密相邻。使用小鼠遗传模型,我们进一步表明,Klhl17单倍型充足和敲除导致含有ER簇的树突棘减少,并改变树突棘处的钙事件。因此,活性依赖性树突棘增大和神经元激活(由细胞外信号调节激酶(ERK)磷酸化和C-FOS表达反映)受损。此外,我们发现破坏KLHL17和SYNPO结合的效果与KLHL17单倍充足和敲除的结果相似,进一步加强了KLHL17与SYNPO共同调节突触可塑性的证据。总之,我们的发现揭示了KLHL17通过调节SYNPO和突触ER簇在控制突触可塑性中的作用,并暗示突触可塑性受损是KLHL17相关疾病的病因之一。
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引用次数: 0
Auditory cortex ensembles jointly encode sound and locomotion speed to support sound perception during movement. 听觉皮层集合共同编码声音和运动速度,以支持运动过程中的声音感知。
IF 9.8 1区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-08-31 eCollection Date: 2023-08-01 DOI: 10.1371/journal.pbio.3002277
Carlos Arturo Vivaldo, Joonyeup Lee, MaryClaire Shorkey, Ajay Keerthy, Gideon Rothschild

The ability to process and act upon incoming sounds during locomotion is critical for survival and adaptive behavior. Despite the established role that the auditory cortex (AC) plays in behavior- and context-dependent sound processing, previous studies have found that auditory cortical activity is on average suppressed during locomotion as compared to immobility. While suppression of auditory cortical responses to self-generated sounds results from corollary discharge, which weakens responses to predictable sounds, the functional role of weaker responses to unpredictable external sounds during locomotion remains unclear. In particular, whether suppression of external sound-evoked responses during locomotion reflects reduced involvement of the AC in sound processing or whether it results from masking by an alternative neural computation in this state remains unresolved. Here, we tested the hypothesis that rather than simple inhibition, reduced sound-evoked responses during locomotion reflect a tradeoff with the emergence of explicit and reliable coding of locomotion velocity. To test this hypothesis, we first used neural inactivation in behaving mice and found that the AC plays a critical role in sound-guided behavior during locomotion. To investigate the nature of this processing, we used two-photon calcium imaging of local excitatory auditory cortical neural populations in awake mice. We found that locomotion had diverse influences on activity of different neurons, with a net suppression of baseline-subtracted sound-evoked responses and neural stimulus detection, consistent with previous studies. Importantly, we found that the net inhibitory effect of locomotion on baseline-subtracted sound-evoked responses was strongly shaped by elevated ongoing activity that compressed the response dynamic range, and that rather than reflecting enhanced "noise," this ongoing activity reliably encoded the animal's locomotion speed. Decoding analyses revealed that locomotion speed and sound are robustly co-encoded by auditory cortical ensemble activity. Finally, we found consistent patterns of joint coding of sound and locomotion speed in electrophysiologically recorded activity in freely moving rats. Together, our data suggest that rather than being suppressed by locomotion, auditory cortical ensembles explicitly encode it alongside sound information to support sound perception during locomotion.

在运动过程中处理传入声音并对其采取行动的能力对生存和适应行为至关重要。尽管听觉皮层(AC)在依赖行为和上下文的声音处理中发挥着既定的作用,但先前的研究发现,与不动相比,听觉皮层的活动在运动过程中平均受到抑制。虽然听觉皮层对自身产生的声音的反应受到抑制是由必然放电引起的,这会削弱对可预测声音的反应,但在运动过程中,对不可预测的外部声音的较弱反应的功能作用尚不清楚。特别地,在运动过程中对外部声音诱发反应的抑制是否反映了AC在声音处理中的参与减少,或者它是否是由在这种状态下的替代神经计算的掩蔽引起的,仍然没有解决。在这里,我们检验了这样一种假设,即运动过程中声音诱发反应的减少不是简单的抑制,而是与运动速度的明确可靠编码的出现相权衡。为了验证这一假设,我们首先在行为小鼠中使用神经失活,发现AC在运动过程中的声音引导行为中起着关键作用。为了研究这一过程的性质,我们对清醒小鼠的局部兴奋性听觉皮层神经群体进行了双光子钙成像。我们发现,运动对不同神经元的活动有不同的影响,与之前的研究一致,对基线减去的声音诱发反应和神经刺激检测有净抑制作用。重要的是,我们发现,运动对基线减去声音诱发反应的净抑制作用是由压缩反应动态范围的持续活动增强形成的,这种持续活动并没有反映出“噪音”的增强,而是可靠地编码了动物的运动速度。解码分析表明,运动速度和声音是由听觉皮层合奏活动稳健地共同编码的。最后,我们发现在自由运动的大鼠的电生理记录活动中,声音和运动速度的联合编码模式是一致的。总之,我们的数据表明,听觉皮层系统并没有被运动抑制,而是将其与声音信息一起明确编码,以支持运动过程中的声音感知。
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引用次数: 0
Inhibition of ribosome biogenesis in the epidermis is sufficient to trigger organism-wide growth quiescence independently of nutritional status in C. elegans. 抑制核糖体在表皮中的生物发生足以引发秀丽隐杆线虫的全生物体生长停滞,而与营养状况无关。
IF 9.8 1区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-08-31 eCollection Date: 2023-08-01 DOI: 10.1371/journal.pbio.3002276
Qiuxia Zhao, Rekha Rangan, Shinuo Weng, Cem Özdemir, Elif Sarinay Cenik

Interorgan communication is crucial for multicellular organismal growth, development, and homeostasis. Cell nonautonomous inhibitory cues, which limit tissue-specific growth alterations, are not well characterized due to cell ablation approach limitations. In this study, we employed the auxin-inducible degradation system in C. elegans to temporally and spatially modulate ribosome biogenesis, through depletion of essential factors (RPOA-2, GRWD-1, or TSR-2). Our findings reveal that embryo-wide inhibition of ribosome biogenesis induces a reversible early larval growth quiescence, distinguished by a unique gene expression signature that is different from starvation or dauer stages. When ribosome biogenesis is inhibited in volumetrically similar tissues, including body wall muscle, epidermis, pharynx, intestine, or germ line, it results in proportionally stunted growth across the organism to different degrees. We show that specifically inhibiting ribosome biogenesis in the epidermis is sufficient to trigger an organism-wide growth quiescence. Epidermis-specific ribosome depletion leads to larval growth quiescence at the L3 stage, reduces organism-wide protein synthesis, and induced cell nonautonomous gene expression alterations. Further molecular analysis reveals overexpression of secreted proteins, suggesting an organism-wide regulatory mechanism. We find that UNC-31, a dense-core vesicle (DCV) pathway component, plays a significant role in epidermal ribosome biogenesis-mediated growth quiescence. Our tissue-specific knockdown experiments reveal that the organism-wide growth quiescence induced by epidermal-specific ribosome biogenesis inhibition is suppressed by reducing unc-31 expression in the epidermis, but not in neurons or body wall muscles. Similarly, IDA-1, a membrane-associated protein of the DCV, is overexpressed, and its knockdown in epidermis suppresses the organism-wide growth quiescence in response to epidermal ribosome biogenesis inhibition. Finally, we observe an overall increase in DCV puncta labeled by IDA-1 when epidermal ribosome biogenesis is inhibited, and these puncta are present in or near epidermal cells. In conclusion, these findings suggest a novel mechanism of nutrition-independent multicellular growth coordination initiated from the epidermis tissue upon ribosome biogenesis inhibition.

器官间的交流对多细胞生物的生长、发育和稳态至关重要。由于细胞消融方法的局限性,限制组织特异性生长改变的细胞非自主抑制性线索没有得到很好的表征。在这项研究中,我们利用秀丽隐杆线虫中生长素诱导的降解系统,通过消耗必需因子(RPOA-2、GRWD-1或TSR-2),在时间和空间上调节核糖体的生物发生。我们的研究结果表明,胚胎范围内对核糖体生物发生的抑制诱导了可逆的早期幼虫生长停滞,其特点是独特的基因表达特征不同于饥饿或衰老阶段。当核糖体的生物发生在体积相似的组织中受到抑制时,包括体壁肌肉、表皮、咽部、肠道或生殖系,会导致整个生物体不同程度的生长发育迟缓。我们表明,特异性抑制表皮中核糖体的生物发生足以引发整个生物体的生长停滞。表皮特异性核糖体缺失导致幼虫在L3阶段生长停滞,减少整个生物体的蛋白质合成,并诱导细胞非自主基因表达改变。进一步的分子分析揭示了分泌蛋白的过度表达,提示了整个生物体的调节机制。我们发现UNC-31是一种致密核心囊泡(DCV)通路成分,在表皮核糖体生物发生介导的生长停滞中发挥着重要作用。我们的组织特异性敲除实验表明,表皮特异性核糖体生物发生抑制诱导的全生物体生长停滞通过减少表皮中unc-31的表达而受到抑制,但在神经元或体壁肌肉中没有。类似地,IDA-1,DCV的膜相关蛋白,过表达,并且其在表皮中的敲低抑制了整个生物体的生长停滞,以响应表皮核糖体生物发生抑制。最后,我们观察到,当表皮核糖体生物发生受到抑制时,IDA-1标记的DCV点状点总体增加,并且这些点状点存在于表皮细胞中或附近。总之,这些发现表明了一种新的营养非依赖性多细胞生长协调机制,该机制始于核糖体生物发生抑制后的表皮组织。
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引用次数: 0
Human neuronal excitation/inhibition balance explains and predicts neurostimulation induced learning benefits. 人类神经元兴奋/抑制平衡解释并预测神经刺激诱导的学习益处。
IF 9.8 1区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-08-31 eCollection Date: 2023-08-01 DOI: 10.1371/journal.pbio.3002193
Nienke E R van Bueren, Sanne H G van der Ven, Shachar Hochman, Francesco Sella, Roi Cohen Kadosh

Previous research has highlighted the role of the excitation/inhibition (E/I) ratio for typical and atypical development, mental health, cognition, and learning. Other research has highlighted the benefits of high-frequency transcranial random noise stimulation (tRNS)-an excitatory form of neurostimulation-on learning. We examined the E/I as a potential mechanism and studied whether tRNS effect on learning depends on E/I as measured by the aperiodic exponent as its putative marker. In addition to manipulating E/I using tRNS, we also manipulated the level of learning (learning/overlearning) that has been shown to influence E/I. Participants (n = 102) received either sham stimulation or 20-minute tRNS over the dorsolateral prefrontal cortex (DLPFC) during a mathematical learning task. We showed that tRNS increased E/I, as reflected by the aperiodic exponent, and that lower E/I predicted greater benefit from tRNS specifically for the learning task. In contrast to previous magnetic resonance spectroscopy (MRS)-based E/I studies, we found no effect of the level of learning on E/I. A further analysis using a different data set suggest that both measures of E/I (EEG versus MRS) may reflect, at least partly, different biological mechanisms. Our results highlight the role of E/I as a marker for neurostimulation efficacy and learning. This mechanistic understanding provides better opportunities for augmented learning and personalized interventions.

先前的研究强调了兴奋/抑制(E/I)比率在典型和非典型发展、心理健康、认知和学习中的作用。其他研究强调了高频经颅随机噪声刺激(tRNS)的好处,tRNS是一种对学习的兴奋性神经刺激形式。我们研究了E/I作为一种潜在机制,并研究了tRNS对学习的影响是否取决于作为其假定标记的非周期指数所测量的E/I。除了使用tRNS操纵E/I外,我们还操纵了已被证明会影响E/I的学习水平(学习/过度学习)。参与者(n=102)在数学学习任务中通过背外侧前额叶皮层(DLPFC)接受假刺激或20分钟tRNS。我们发现,正如非周期指数所反映的那样,tRNS增加了E/I,而较低的E/I预测了tRNS对学习任务的更大益处。与之前基于磁共振波谱(MRS)的E/I研究相比,我们没有发现学习水平对E/I的影响。使用不同数据集的进一步分析表明,E/I(EEG与MRS)的两种测量可能至少部分反映了不同的生物学机制。我们的研究结果强调了E/I作为神经刺激疗效和学习标志物的作用。这种机械的理解为强化学习和个性化干预提供了更好的机会。
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引用次数: 1
Rapid structural remodeling of peripheral taste neurons is independent of taste cell turnover. 外周味觉神经元的快速结构重塑与味觉细胞的周转无关。
IF 9.8 1区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-08-31 eCollection Date: 2023-08-01 DOI: 10.1371/journal.pbio.3002271
Zachary D Whiddon, Jaleia B Marshall, David C Alston, Aaron W McGee, Robin F Krimm

Taste bud cells are constantly replaced in taste buds as old cells die and new cells migrate into the bud. The perception of taste relies on new taste bud cells integrating with existing neural circuitry, yet how these new cells connect with a taste ganglion neuron is unknown. Do taste ganglion neurons remodel to accommodate taste bud cell renewal? If so, how much of the structure of taste axons is fixed and how much remodels? Here, we measured the motility and branching of individual taste arbors (the portion of the axon innervating taste buds) in mice over time with two-photon in vivo microscopy. Terminal branches of taste arbors continuously and rapidly remodel within the taste bud. This remodeling is faster than predicted by taste bud cell renewal, with terminal branches added and lost concurrently. Surprisingly, blocking entry of new taste bud cells with chemotherapeutic agents revealed that remodeling of the terminal branches on taste arbors does not rely on the renewal of taste bud cells. Although terminal branch remodeling was fast and intrinsically controlled, no new arbors were added to taste buds, and few were lost over 100 days. Taste ganglion neurons maintain a stable number of arbors that are each capable of high-speed remodeling. We propose that terminal branch plasticity permits arbors to locate new taste bud cells, while stability of arbor number supports constancy in the degree of connectivity and function for each neuron over time.

随着老细胞的死亡和新细胞迁移到味蕾中,味蕾细胞在味蕾中不断被替换。味觉的感知依赖于新的味蕾细胞与现有的神经回路的整合,然而这些新细胞如何与味觉神经节神经元连接尚不清楚。味觉神经节神经元是否会重塑以适应味蕾细胞的更新?如果是这样,味觉轴突的结构有多少是固定的,有多少是重塑的?在这里,我们用双光子体内显微镜测量了小鼠单个味觉轴(支配味蕾的轴突部分)随时间的运动和分支。味觉乔木的末端分支在味蕾内持续而快速地重塑。这种重塑比味蕾细胞更新预测的要快,末端分支同时增加和减少。令人惊讶的是,用化学治疗剂阻断新味蕾细胞的进入表明,味蕾末端分支的重塑并不依赖于味蕾细胞更新。尽管末端分支重塑是快速且内在可控的,但味蕾中没有添加新的乔木,在100天内几乎没有损失。味觉神经节神经元维持着稳定数量的心轴,每个心轴都能够高速重塑。我们提出,末端分支的可塑性允许乔木定位新的味蕾细胞,而乔木数量的稳定性支持每个神经元的连接程度和功能随时间的推移保持不变。
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引用次数: 0
An interactive deep learning-based approach reveals mitochondrial cristae topologies. 一种基于交互式深度学习的方法揭示了线粒体嵴的拓扑结构。
IF 9.8 1区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-08-31 eCollection Date: 2023-08-01 DOI: 10.1371/journal.pbio.3002246
Shogo Suga, Koki Nakamura, Yu Nakanishi, Bruno M Humbel, Hiroki Kawai, Yusuke Hirabayashi

The convolution of membranes called cristae is a critical structural and functional feature of mitochondria. Crista structure is highly diverse between different cell types, reflecting their role in metabolic adaptation. However, their precise three-dimensional (3D) arrangement requires volumetric analysis of serial electron microscopy and has therefore been limiting for unbiased quantitative assessment. Here, we developed a novel, publicly available, deep learning (DL)-based image analysis platform called Python-based human-in-the-loop workflow (PHILOW) implemented with a human-in-the-loop (HITL) algorithm. Analysis of dense, large, and isotropic volumes of focused ion beam-scanning electron microscopy (FIB-SEM) using PHILOW reveals the complex 3D nanostructure of both inner and outer mitochondrial membranes and provides deep, quantitative, structural features of cristae in a large number of individual mitochondria. This nanometer-scale analysis in micrometer-scale cellular contexts uncovers fundamental parameters of cristae, such as total surface area, orientation, tubular/lamellar cristae ratio, and crista junction density in individual mitochondria. Unbiased clustering analysis of our structural data unraveled a new function for the dynamin-related GTPase Optic Atrophy 1 (OPA1) in regulating the balance between lamellar versus tubular cristae subdomains.

称为嵴的膜的卷积是线粒体的一个关键结构和功能特征。Crista结构在不同细胞类型之间高度多样,反映了它们在代谢适应中的作用。然而,它们精确的三维(3D)排列需要连续电子显微镜的体积分析,因此限制了无偏定量评估。在这里,我们开发了一个新颖的、公开可用的、基于深度学习(DL)的图像分析平台,称为基于Python的人在环工作流(PHILOW),该平台使用人在环(HITL)算法实现。使用PHILOW对密集、大体积和各向同性体积的聚焦离子束扫描电子显微镜(FIB-SEM)进行分析,揭示了线粒体内膜和外膜的复杂3D纳米结构,并提供了大量单个线粒体嵴的深层、定量和结构特征。这种在微米级细胞背景下的纳米级分析揭示了嵴的基本参数,如总表面积、取向、管状/片状嵴比率和单个线粒体中的嵴连接密度。对我们的结构数据进行无偏聚类分析,揭示了动力蛋白相关的GTP酶-视神经萎缩1(OPA1)在调节板层嵴与管状嵴亚结构域之间的平衡方面的新功能。
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引用次数: 0
The microbiota conditions a gut milieu that selects for wild-type Salmonella Typhimurium virulence. 微生物群调节肠道环境,选择野生型鼠伤寒沙门氏菌的毒力。
IF 9.8 1区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-08-31 eCollection Date: 2023-08-01 DOI: 10.1371/journal.pbio.3002253
Ersin Gül, Erik Bakkeren, Guillem Salazar, Yves Steiger, Andrew Abi Younes, Melanie Clerc, Philipp Christen, Stefan A Fattinger, Bidong D Nguyen, Patrick Kiefer, Emma Slack, Martin Ackermann, Julia A Vorholt, Shinichi Sunagawa, Médéric Diard, Wolf-Dietrich Hardt

Salmonella Typhimurium elicits gut inflammation by the costly expression of HilD-controlled virulence factors. This inflammation alleviates colonization resistance (CR) mediated by the microbiota and thereby promotes pathogen blooms. However, the inflamed gut-milieu can also select for hilD mutants, which cannot elicit or maintain inflammation, therefore causing a loss of the pathogen's virulence. This raises the question of which conditions support the maintenance of virulence in S. Typhimurium. Indeed, it remains unclear why the wild-type hilD allele is dominant among natural isolates. Here, we show that microbiota transfer from uninfected or recovered hosts leads to rapid clearance of hilD mutants that feature attenuated virulence, and thereby contributes to the preservation of the virulent S. Typhimurium genotype. Using mouse models featuring a range of microbiota compositions and antibiotic- or inflammation-inflicted microbiota disruptions, we found that irreversible disruption of the microbiota leads to the accumulation of hilD mutants. In contrast, in models with a transient microbiota disruption, selection for hilD mutants was prevented by the regrowing microbiota community dominated by Lachnospirales and Oscillospirales. Strikingly, even after an irreversible microbiota disruption, microbiota transfer from uninfected donors prevented the rise of hilD mutants. Our results establish that robust S. Typhimurium gut colonization hinges on optimizing its manipulation of the host: A transient and tempered microbiota perturbation is favorable for the pathogen to both flourish in the inflamed gut and also minimize loss of virulence. Moreover, besides conferring CR, the microbiota may have the additional consequence of maintaining costly enteropathogen virulence mechanisms.

鼠伤寒沙门氏菌通过昂贵的HilD控制的毒力因子的表达引发肠道炎症。这种炎症减轻了由微生物群介导的定植抗性(CR),从而促进了病原体的繁殖。然而,发炎的肠道环境也可以选择hilD突变体,这些突变体不能引发或维持炎症,因此导致病原体毒力的丧失。这就提出了一个问题,即哪些条件支持鼠伤寒杆菌毒力的维持。事实上,目前尚不清楚为什么野生型hilD等位基因在天然分离株中占主导地位。在这里,我们表明,从未感染或恢复的宿主转移微生物群会导致以毒力减弱为特征的hilD突变体的快速清除,从而有助于毒力鼠伤寒沙门氏菌基因型的保存。使用具有一系列微生物群组成和抗生素或炎症引起的微生物群破坏的小鼠模型,我们发现微生物群的不可逆破坏会导致hilD突变体的积累。相反,在具有短暂微生物群破坏的模型中,由Lachnospirales和Oscillospirales主导的再生微生物群群落阻止了对hilD突变体的选择。引人注目的是,即使在不可逆的微生物群破坏之后,来自未感染供体的微生物群转移也阻止了hilD突变体的增加。我们的研究结果表明,鼠伤寒沙门氏菌强大的肠道定殖取决于优化其对宿主的操作:短暂而温和的微生物群扰动有利于病原体在发炎的肠道中繁殖,并将毒力损失降至最低。此外,除了赋予CR外,微生物群还可能具有维持昂贵的肠道病原体毒力机制的额外后果。
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引用次数: 0
TOR complex 1 negatively regulates NDR kinase Cbk1 to control cell separation in budding yeast. TOR复合物1负调控NDR激酶Cbk1以控制出芽酵母中的细胞分离。
IF 9.8 1区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-08-30 eCollection Date: 2023-08-01 DOI: 10.1371/journal.pbio.3002263
Magdalena Foltman, Iván Mendez, Joan J Bech-Serra, Carolina de la Torre, Jennifer L Brace, Eric L Weiss, María Lucas, Ethel Queralt, Alberto Sanchez-Diaz

The target of rapamycin (TOR) signalling pathway plays a key role in the coordination between cellular growth and the cell cycle machinery in eukaryotes. The underlying molecular mechanisms by which TOR might regulate events after anaphase remain unknown. We show for the first time that one of the 2 TOR complexes in budding yeast, TORC1, blocks the separation of cells following cytokinesis by phosphorylation of a member of the NDR (nuclear Dbf2-related) protein-kinase family, the protein Cbk1. We observe that TORC1 alters the phosphorylation pattern of Cbk1 and we identify a residue within Cbk1 activation loop, T574, for which a phosphomimetic substitution makes Cbk1 catalytically inactive and, indeed, reproduces TORC1 control over cell separation. In addition, we identify the exocyst component Sec3 as a key substrate of Cbk1, since Sec3 activates the SNARE complex to promote membrane fusion. TORC1 activity ultimately compromises the interaction between Sec3 and a t-SNARE component. Our data indicate that TORC1 negatively regulates cell separation in budding yeast by participating in Cbk1 phosphorylation, which in turn controls the fusion of secretory vesicles transporting hydrolase at the site of division.

雷帕霉素靶点(TOR)信号通路在真核生物细胞生长和细胞周期机制之间的协调中起着关键作用。TOR调节后期事件的潜在分子机制尚不清楚。我们首次表明,出芽酵母中的2种TOR复合物之一TORC1通过NDR(核Dbf2相关)蛋白激酶家族成员Cbk1蛋白的磷酸化来阻断胞质分裂后细胞的分离。我们观察到TORC1改变了Cbk1的磷酸化模式,我们在Cbk1激活环T574中鉴定了一个残基,对于该残基,拟磷酸取代使Cbk1具有催化活性,并且实际上再现了TORC1对细胞分离的控制。此外,我们确定胞外成分Sec3是Cbk1的关键底物,因为Sec3激活SNARE复合物以促进膜融合。TORC1活性最终损害Sec3和t-SNARE成分之间的相互作用。我们的数据表明,TORC1通过参与Cbk1磷酸化来负调控出芽酵母中的细胞分离,从而控制在分裂位点运输水解酶的分泌囊泡的融合。
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引用次数: 1
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