Pub Date : 2024-02-12DOI: 10.1007/s10725-024-01119-z
Fushuai Gong, Xiangru Zhou, Kun Cao, Hongwei Xu, Xiaofu Zhou
Due to their ability to act as antioxidants, many metabolites serve as plant defense chemicals. Holistic metabolomic analysis is a method to investigate UV-B radiation impacts because the metabolome directly represents the physiological state of the plant. In order to determine how the exposure to UV-B radiation affected the accumulation of primary metabolites (amino acids, organic acids), secondary metabolites (phenolic compounds, fatty acids), and their synergistic antioxidant capacity in Rhododendron chrysanthum Pall., this study used gas chromatography-time-of-flight mass spectrometry (GC-TOFMS). Metabolite analysis revealed that there were 444 metabolites in total. Most amino acids and organic acids, in particular, rose in concentration following being exposed to UV-B. Simultaneously, the levels of tricarboxylic acid cycle (TCA) intermediates and phenolic compounds grew steadily. Furthermore, after UV-B therapy, the amount of anthocyanins, which are known to be powerful antioxidants, rose. In terms of protein–protein interaction (PPI) and enzyme content, the experimental group demonstrated greater antioxidant ability. In reaction to UV-B radiation, the content of metabolites that act as antioxidants increased. This experiment proved that R. chrysanthum main and secondary metabolisms were altered by UV-B radiation. It sheds some information on the combined analysis of metabolomics and other omics in R. chrysanthum.
{"title":"Analyses of the metabolism and assessment of antioxidant activity in Rhododendron chrysanthum Pall. after UV-B Irradiation","authors":"Fushuai Gong, Xiangru Zhou, Kun Cao, Hongwei Xu, Xiaofu Zhou","doi":"10.1007/s10725-024-01119-z","DOIUrl":"https://doi.org/10.1007/s10725-024-01119-z","url":null,"abstract":"<p>Due to their ability to act as antioxidants, many metabolites serve as plant defense chemicals. Holistic metabolomic analysis is a method to investigate UV-B radiation impacts because the metabolome directly represents the physiological state of the plant. In order to determine how the exposure to UV-B radiation affected the accumulation of primary metabolites (amino acids, organic acids), secondary metabolites (phenolic compounds, fatty acids), and their synergistic antioxidant capacity in <i>Rhododendron chrysanthum</i> Pall., this study used gas chromatography-time-of-flight mass spectrometry (GC-TOFMS). Metabolite analysis revealed that there were 444 metabolites in total. Most amino acids and organic acids, in particular, rose in concentration following being exposed to UV-B. Simultaneously, the levels of tricarboxylic acid cycle (TCA) intermediates and phenolic compounds grew steadily. Furthermore, after UV-B therapy, the amount of anthocyanins, which are known to be powerful antioxidants, rose. In terms of protein–protein interaction (PPI) and enzyme content, the experimental group demonstrated greater antioxidant ability. In reaction to UV-B radiation, the content of metabolites that act as antioxidants increased. This experiment proved that <i>R. chrysanthum</i> main and secondary metabolisms were altered by UV-B radiation. It sheds some information on the combined analysis of metabolomics and other omics in <i>R. chrysanthum.</i></p>","PeriodicalId":20412,"journal":{"name":"Plant Growth Regulation","volume":"120 1","pages":""},"PeriodicalIF":4.2,"publicationDate":"2024-02-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139763117","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-02-10DOI: 10.1007/s10725-024-01118-0
Wenyan Zhou, Mingliang He, Xiaojie Tian, Qingjie Guan, Xinglong Yu, Qingyun Bu, Xiufeng Li
The heading date of rice is a crucial agronomic traits affecting regional adaptation and grain productivity. Manipulating the vegetative growth period or delaying flowering can increase the yield and quality. The RICE FLOWERING LOCUS T (RFT1) has a critical role in flowering regulation. Here, we aimed to delay flowering in rice by reducing the expression of RFT1. For this purpose, we targeted four sites within the 0.5-kb region of RFT1 promoter for gene editing. Six homozygous mutant lines were obtained (rft1 pro-1 to rft1 pro-6), which showed delayed heading dates by 1.4–9.2 days. In addition, expression levels of Hd3a and RFT1 were significantly reduced, corroborating the late flowering phenotype. Using a dual-luciferase reporter in rice protoplast, we established that the protein level of LUC driven by the edited rft1 promoter was lower than that driven by the RFT1 promoter. In conclusion, we have developed a viable strategy to delay rice flowering by editing promoter of flower-promoting gene.
{"title":"Genome editing of RICE FLOWERING LOCUS T 1 promoter delayed flowering in rice","authors":"Wenyan Zhou, Mingliang He, Xiaojie Tian, Qingjie Guan, Xinglong Yu, Qingyun Bu, Xiufeng Li","doi":"10.1007/s10725-024-01118-0","DOIUrl":"https://doi.org/10.1007/s10725-024-01118-0","url":null,"abstract":"<p>The heading date of rice is a crucial agronomic traits affecting regional adaptation and grain productivity. Manipulating the vegetative growth period or delaying flowering can increase the yield and quality. The <i>RICE FLOWERING LOCUS T</i> (<i>RFT1</i>) has a critical role in flowering regulation. Here, we aimed to delay flowering in rice by reducing the expression of <i>RFT1</i>. For this purpose, we targeted four sites within the 0.5-kb region of <i>RFT1</i> promoter for gene editing. Six homozygous mutant lines were obtained (<i>rft1 pro-1</i> to <i>rft1 pro-6</i>), which showed delayed heading dates by 1.4–9.2 days. In addition, expression levels of <i>Hd3a</i> and <i>RFT1</i> were significantly reduced, corroborating the late flowering phenotype. Using a dual-luciferase reporter in rice protoplast, we established that the protein level of LUC driven by the edited <i>rft1</i> promoter was lower than that driven by the <i>RFT1</i> promoter. In conclusion, we have developed a viable strategy to delay rice flowering by editing promoter of flower-promoting gene.</p>","PeriodicalId":20412,"journal":{"name":"Plant Growth Regulation","volume":"16 1","pages":""},"PeriodicalIF":4.2,"publicationDate":"2024-02-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139763043","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-02-06DOI: 10.1007/s10725-024-01128-y
Abstract
Through intricate interactions with phytohormones, sodium nitroprusside (SNP), a nitric oxide (NO) donor, has a variety of impacts on plant physiology. This comprehensive review sheds light on the significance of SNP’s in plant biology under normal and stress conditions. SNP’s history, importance in plant biology, and interactions with phytohormones must all be understood to comprehend its physiological impacts on plant growth and development. This study examines how SNP influences seed germination, root growth, flowering duration, fruit development, and resistance to biotic and abiotic challenges to improve stress tolerance and crop productivity. Based on the literature review this study explored the molecular and pharmaceutical mechanisms of SNP-phytohormone, crosstalk affects, important signaling pathways, including calcium-dependent signaling and MAPK cascades. The requirement for tailored application strategies is highlighted by the fact that different plant species and genotypes react to SNP treatment differently depending on the context. This study also discussed the consequences of environmental and agricultural sustainability, emphasizing SNP’s potential to improve stress tolerance, pest control, and crop output. For sustainable, practical applications, it also underlines the necessity to handle obstacles and constraints such as concentration-dependent effects and potential environmental repercussions. Understanding the complex interactions between SNP and phytohormones provides doors for sustainable agriculture and biotechnology advancements. This comprehensive study offers encouraging possibilities for solving major issues in agriculture and environmental resilience by illuminating the molecular and physiological mechanisms.
摘要 硝普钠(SNP)是一种一氧化氮(NO)供体,通过与植物激素之间错综复杂的相互作用,对植物生理产生了多种影响。这篇综述揭示了 SNP 在正常和胁迫条件下对植物生物学的重要意义。要理解 SNP 对植物生长和发育的生理影响,就必须了解 SNP 的历史、在植物生物学中的重要性以及与植物激素的相互作用。本研究探讨了 SNP 如何影响种子萌发、根系生长、花期、果实发育以及对生物和非生物挑战的抵抗力,从而提高抗逆性和作物产量。在文献综述的基础上,本研究探讨了SNP-植物激素的分子和药物机制、串联影响、重要的信号通路,包括钙依赖信号和MAPK级联。不同植物物种和基因型对 SNP 处理的反应因环境而异,这一事实突出说明了定制应用策略的必要性。这项研究还讨论了环境和农业可持续性的后果,强调了 SNP 在提高抗逆性、病虫害控制和作物产量方面的潜力。为了实现可持续的实际应用,研究还强调了处理障碍和限制因素的必要性,如浓度依赖效应和潜在的环境影响。了解 SNP 与植物激素之间复杂的相互作用为可持续农业和生物技术进步提供了大门。这项综合研究通过阐明分子和生理机制,为解决农业和环境复原力方面的重大问题提供了令人鼓舞的可能性。
{"title":"The multifaceted role of sodium nitroprusside in plants: crosstalk with phytohormones under normal and stressful conditions","authors":"","doi":"10.1007/s10725-024-01128-y","DOIUrl":"https://doi.org/10.1007/s10725-024-01128-y","url":null,"abstract":"<h3>Abstract</h3> <p>Through intricate interactions with phytohormones, sodium nitroprusside (SNP), a nitric oxide (NO) donor, has a variety of impacts on plant physiology. This comprehensive review sheds light on the significance of SNP’s in plant biology under normal and stress conditions. SNP’s history, importance in plant biology, and interactions with phytohormones must all be understood to comprehend its physiological impacts on plant growth and development. This study examines how SNP influences seed germination, root growth, flowering duration, fruit development, and resistance to biotic and abiotic challenges to improve stress tolerance and crop productivity. Based on the literature review this study explored the molecular and pharmaceutical mechanisms of SNP-phytohormone, crosstalk affects, important signaling pathways, including calcium-dependent signaling and MAPK cascades. The requirement for tailored application strategies is highlighted by the fact that different plant species and genotypes react to SNP treatment differently depending on the context. This study also discussed the consequences of environmental and agricultural sustainability, emphasizing SNP’s potential to improve stress tolerance, pest control, and crop output. For sustainable, practical applications, it also underlines the necessity to handle obstacles and constraints such as concentration-dependent effects and potential environmental repercussions. Understanding the complex interactions between SNP and phytohormones provides doors for sustainable agriculture and biotechnology advancements. This comprehensive study offers encouraging possibilities for solving major issues in agriculture and environmental resilience by illuminating the molecular and physiological mechanisms.</p>","PeriodicalId":20412,"journal":{"name":"Plant Growth Regulation","volume":"4 1","pages":""},"PeriodicalIF":4.2,"publicationDate":"2024-02-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139763112","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Salt stress is a major cause of crop failure worldwide. In this study, a plant growth-promoting rhizobacteria (PGPR) strain Bacillus cereus BC56 was isolated from the rhizosphere soil of cucumber. BC56 has the ability to produce NH3 and siderophore, and to solubilize phosphorus to promote cucumber growth. Under 100 mM NaCl treatment, BC56 significantly increased shoot length (1.28-fold), root length (1.16-fold), shoot fresh weight (1.19-fold), root fresh weight (1.54-fold), and chlorophyll fluorescence parameter of ABS/CSm (1.19-fold), TR0/CSm (1.22-fold), ET0/CSm (1.52-fold), SPAD (1.12-fold) of cucumber seedlings compared to the cucumber without BC56 inoculation. Physiological and biochemical analysis showed that BC56 could increase the content of total soluble sugars (TSS, 1.36-fold) in cucumber seedlings. BC56 also increased peroxidase (POD, 1.17-fold) and glutathione reductase (GR, 2.59-fold) activity of cucumber seedlings, which can scavenge reactive oxygen species (ROS) to reduce salt toxicity. However, cucumber seedlings inoculated with BC56 showed a 0.59-fold decrease in abscisic acid (ABA) compared to those uninoculated with BC56. RNA-seq results showed that BC56 induced changes in the expression of a significant number of genes related to photosynthesis, phytohormones, transcriptional regulation, metabolite synthesis and metabolism, and cellular components in cucumber under salt stress, suggesting its role in reducing the deleterious effects of salinity. We concluded that BC56 can alleviate salt stress in cucumber seedlings by affecting photosynthesis, phytohormone levels, osmotic and antioxidant regulation.
{"title":"Rhizosphere inoculation of PGPR strain Bacillus cereus BC56 enhances salt tolerance of cucumber","authors":"Hanru Song, Gengwei Wu, Huasen Wang, Ruizhi Huang, Xue Gong, Hua Wang","doi":"10.1007/s10725-024-01127-z","DOIUrl":"https://doi.org/10.1007/s10725-024-01127-z","url":null,"abstract":"<p>Salt stress is a major cause of crop failure worldwide. In this study, a plant growth-promoting rhizobacteria (PGPR) strain <i>Bacillus cereus</i> BC56 was isolated from the rhizosphere soil of cucumber. BC56 has the ability to produce NH<sub>3</sub> and siderophore, and to solubilize phosphorus to promote cucumber growth. Under 100 mM NaCl treatment, BC56 significantly increased shoot length (1.28-fold), root length (1.16-fold), shoot fresh weight (1.19-fold), root fresh weight (1.54-fold), and chlorophyll fluorescence parameter of ABS/CS<sub>m</sub> (1.19-fold), TR<sub>0</sub>/CS<sub>m</sub> (1.22-fold), ET<sub>0</sub>/CS<sub>m</sub> (1.52-fold), SPAD (1.12-fold) of cucumber seedlings compared to the cucumber without BC56 inoculation. Physiological and biochemical analysis showed that BC56 could increase the content of total soluble sugars (TSS, 1.36-fold) in cucumber seedlings. BC56 also increased peroxidase (POD, 1.17-fold) and glutathione reductase (GR, 2.59-fold) activity of cucumber seedlings, which can scavenge reactive oxygen species (ROS) to reduce salt toxicity. However, cucumber seedlings inoculated with BC56 showed a 0.59-fold decrease in abscisic acid (ABA) compared to those uninoculated with BC56. RNA-seq results showed that BC56 induced changes in the expression of a significant number of genes related to photosynthesis, phytohormones, transcriptional regulation, metabolite synthesis and metabolism, and cellular components in cucumber under salt stress, suggesting its role in reducing the deleterious effects of salinity. We concluded that BC56 can alleviate salt stress in cucumber seedlings by affecting photosynthesis, phytohormone levels, osmotic and antioxidant regulation.</p>","PeriodicalId":20412,"journal":{"name":"Plant Growth Regulation","volume":"299 1","pages":""},"PeriodicalIF":4.2,"publicationDate":"2024-01-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139649253","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-01-30DOI: 10.1007/s10725-024-01121-5
Abstract
The date palm (Phoenix dactylifera) is an important cultivated crop in arid areas. Here, we studied the effect of plant genotype and type of fertilizers on the eukaryotic community structures of the date palm rhizosphere. Samples were collected from one wild population, five cultivars from two farms, and a factorial fertilizer experiment (organic, chemical, and biofertilizer) in Qatar. The eukaryotic communities were sequenced using a next-generation sequencing method. A total of 2422 Operational Taxonomic Units (OTUs) were identified as belonging to 15 phyla, Chlorophyta, Streptophyta, Imbricatea, Chytridiomycota, Ascomycota, Olpidiomycota, being dominant. The wild-type date palms showed a low number of OTUs compared to cultivated date palms, potentially due to the strong influence of soil salinity and low moisture level. However, the wild-type date palm hosted the highest number of unique OTUs. PCA revealed that the eukaryotic microbiome of the wild date palms was separated from the cultivated date palms and that the eukaryotic microbial diversity varied between date palm cultivars in similar environments. Using the highest amounts of biofertilizer and chemical fertilizer decreased the species diversity within the samples. However, a high concentration of biofertilizer combined with a low concentration of chemical fertilizers enhanced the eukaryotic diversity within the samples. We conclude that cultivar type (biotic factor), type of fertilizer, and dosage (abiotic factor) play significant roles in determining the microbiome diversity of the rhizosphere. The wild date palm population could potentially host salt and drought-tolerating eukaryotes that should be further investigated for future development of biofertilizers suitable for drylands.
摘要 枣椰树(Phoenix dactylifera)是干旱地区的一种重要栽培作物。在此,我们研究了植物基因型和肥料类型对枣椰根瘤菌真核生物群落结构的影响。样本采集自卡塔尔的一个野生种群、两个农场的五个栽培品种和一个因子肥料实验(有机肥、化肥和生物肥)。采用新一代测序方法对真核生物群落进行了测序。共鉴定出 2422 个操作分类单元(OTUs),隶属于 15 个门,其中以叶绿体门(Chlorophyta)、链叶绿体门(Streptophyta)、担子菌门(Imbricatea)、鞘霉菌门(Chytridiomycota)、子囊菌门(Ascomycota)、寡毛菌门(Opidiomycota)为主。与栽培枣树相比,野生型枣树的 OTU 数量较少,这可能是受土壤盐度和低湿度的影响。不过,野生型枣椰树的独特 OTU 数量最多。PCA 显示,野生枣椰树的真核微生物群与栽培枣椰树的真核微生物群是分开的,而且在类似环境中,不同枣椰树栽培品种的真核微生物多样性也不尽相同。生物肥料和化肥用量最高时,样本中的物种多样性减少。然而,高浓度的生物肥料与低浓度的化肥相结合,则会提高样本中真核微生物的多样性。我们的结论是,栽培品种类型(生物因素)、肥料类型和用量(非生物因素)在决定根瘤菌群微生物组多样性方面起着重要作用。野生枣椰树种群有可能寄生着耐盐和耐旱的真核生物,应进一步研究这些真核生物,以便将来开发适合干旱地区的生物肥料。
{"title":"The effect of type and combination of fertilizers on eukaryotic microbiome of date palm rhizosphere","authors":"","doi":"10.1007/s10725-024-01121-5","DOIUrl":"https://doi.org/10.1007/s10725-024-01121-5","url":null,"abstract":"<h3>Abstract</h3> <p>The date palm (<em>Phoenix dactylifera</em>) is an important cultivated crop in arid areas. Here, we studied the effect of plant genotype and type of fertilizers on the eukaryotic community structures of the date palm rhizosphere. Samples were collected from one wild population, five cultivars from two farms, and a factorial fertilizer experiment (organic, chemical, and biofertilizer) in Qatar. The eukaryotic communities were sequenced using a next-generation sequencing method. A total of 2422 Operational Taxonomic Units (OTUs) were identified as belonging to 15 phyla, <em>Chlorophyta</em>, <em>Streptophyta</em>, <em>Imbricatea</em>, <em>Chytridiomycota</em>, <em>Ascomycota</em>, <em>Olpidiomycota</em>, being dominant. The wild-type date palms showed a low number of OTUs compared to cultivated date palms, potentially due to the strong influence of soil salinity and low moisture level. However, the wild-type date palm hosted the highest number of unique OTUs. PCA revealed that the eukaryotic microbiome of the wild date palms was separated from the cultivated date palms and that the eukaryotic microbial diversity varied between date palm cultivars in similar environments. Using the highest amounts of biofertilizer and chemical fertilizer decreased the species diversity within the samples. However, a high concentration of biofertilizer combined with a low concentration of chemical fertilizers enhanced the eukaryotic diversity within the samples. We conclude that cultivar type (biotic factor), type of fertilizer, and dosage (abiotic factor) play significant roles in determining the microbiome diversity of the rhizosphere. The wild date palm population could potentially host salt and drought-tolerating eukaryotes that should be further investigated for future development of biofertilizers suitable for drylands.</p>","PeriodicalId":20412,"journal":{"name":"Plant Growth Regulation","volume":"67 1","pages":""},"PeriodicalIF":4.2,"publicationDate":"2024-01-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139649479","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-01-29DOI: 10.1007/s10725-023-01109-7
Abstract
The regulatory nucleotide, guanosine 3′,5′-bis(pyrophosphate) (ppGpp), originally identified in Escherichia coli, controls transcription, translation and enzyme activities in bacteria and plastids of plant cells. We recently reported that seedlings of the ppGpp over-producing mutant of Arabidopsis thaliana grown on agar-solidified medium showed larger biomass than those of wild type (WT), especially under nutrient-limiting conditions. However, the reproducibility of the phenotype on the soil is unknown. To better understand the impact of the ppGpp accumulation on plant growth on the soil, phenotypes of the Arabidopsis ppGpp-less and ppGpp-accumulating mutants were characterized on nitrogen-rich and nitrogen-limiting soil. We found that although fresh weight of the ppGpp-accumulating mutant was significantly larger than that of WT under nitrogen-limiting conditions, dry weights of the mutants were the same as that of WT, indicating that impact of the ppGpp accumulation on plant biomass relies on growth conditions. These results confirmed that artificial modulation of ppGpp-dependent plastidial stringent response could contribute to plant growth on soil in response to nitrogen availability.
{"title":"Significance of the plastidial stringent response for plant growth on soil","authors":"","doi":"10.1007/s10725-023-01109-7","DOIUrl":"https://doi.org/10.1007/s10725-023-01109-7","url":null,"abstract":"<h3>Abstract</h3> <p>The regulatory nucleotide, guanosine 3′,5′-bis(pyrophosphate) (ppGpp), originally identified in <em>Escherichia coli</em>, controls transcription, translation and enzyme activities in bacteria and plastids of plant cells. We recently reported that seedlings of the ppGpp over-producing mutant of <em>Arabidopsis thaliana</em> grown on agar-solidified medium showed larger biomass than those of wild type (WT), especially under nutrient-limiting conditions. However, the reproducibility of the phenotype on the soil is unknown. To better understand the impact of the ppGpp accumulation on plant growth on the soil, phenotypes of the Arabidopsis ppGpp-less and ppGpp-accumulating mutants were characterized on nitrogen-rich and nitrogen-limiting soil. We found that although fresh weight of the ppGpp-accumulating mutant was significantly larger than that of WT under nitrogen-limiting conditions, dry weights of the mutants were the same as that of WT, indicating that impact of the ppGpp accumulation on plant biomass relies on growth conditions. These results confirmed that artificial modulation of ppGpp-dependent plastidial stringent response could contribute to plant growth on soil in response to nitrogen availability.</p>","PeriodicalId":20412,"journal":{"name":"Plant Growth Regulation","volume":"70 1","pages":""},"PeriodicalIF":4.2,"publicationDate":"2024-01-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139579949","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
In plants, the basic leucine zipper (bZIP) family of transcription factors is known for its large size and diversity. Many studies have shown that bZIP transcription factors play an indispensable role in the growth and development of plants; however, there are few reports about the regulation of starch content in grain. To understand the genetic members of the bZIP family, using newly available wheat genome data, we compared our identification of 181 Triticum aestivum bZIP (TabZIP) genes to those reported in earlier studies. Some duplicate genes and incorrect annotations in previous studies were supplemented and corrected. Through phylogenetic analysis, transcriptome data, quantitative reverse transcription PCR (qRT-PCR), a dual-luciferase reporter (DLR), and subcellular localization analysis were used to identify transcription factors that may be involved in grain starch synthesis. We divided genes into 13 known groups and five unknown groups by phylogenetic analysis. All of the bZIP genes exhibited a minimum of one bZIP motif in their motif distribution and gene structure. Spatial and temporal expression patterns of bZIP family members during various stages of plant growth vary, as suggested by transcriptome data, and several genes were specifically expressed during grain development. As per the expression data obtained via qRT-PCR, over 10 TabZIP genes showed similarity with starch synthesis in wheat. The in-vitro binding activity of TabZIP68 to the promoter of TaWaxy was demonstrated by a DLR assay. Expression level of TabZIP68 was affected by different plant hormones treated with developing grains. Given its potential involvement in starch synthesis, the TabZIP68 gene presents itself as a strong candidate for further investigation.
{"title":"Genome-wide identification of the basic leucine zipper transcription factor genes related to starch synthesis in wheat (Triticum aestivum L.)","authors":"Jinjin Ding, Xiaolei Chen, Hassan Karim, Guzmán Carlos, Wendy Harwood, Huaping Tang, Huixue Dong, Qiang Xu, Yazhou Zhang, Yunfeng Jiang, Pengfei Qi, Mei Deng, Jian Ma, Zhien Pu, Wei Li, Jirui Wang, Guoyue Chen, Yuming Wei, Youliang Zheng, Qiantao Jiang","doi":"10.1007/s10725-023-01111-z","DOIUrl":"https://doi.org/10.1007/s10725-023-01111-z","url":null,"abstract":"<p>In plants, the basic leucine zipper (bZIP) family of transcription factors is known for its large size and diversity. Many studies have shown that bZIP transcription factors play an indispensable role in the growth and development of plants; however, there are few reports about the regulation of starch content in grain. To understand the genetic members of the bZIP family, using newly available wheat genome data, we compared our identification of 181 <i>Triticum aestivum bZIP</i> (<i>TabZIP</i>) genes to those reported in earlier studies. Some duplicate genes and incorrect annotations in previous studies were supplemented and corrected. Through phylogenetic analysis, transcriptome data, quantitative reverse transcription PCR (qRT-PCR), a dual-luciferase reporter (DLR), and subcellular localization analysis were used to identify transcription factors that may be involved in grain starch synthesis. We divided genes into 13 known groups and five unknown groups by phylogenetic analysis. All of the <i>bZIP</i> genes exhibited a minimum of one bZIP motif in their motif distribution and gene structure. Spatial and temporal expression patterns of bZIP family members during various stages of plant growth vary, as suggested by transcriptome data, and several genes were specifically expressed during grain development. As per the expression data obtained via qRT-PCR, over 10 TabZIP genes showed similarity with starch synthesis in wheat. The in-vitro binding activity of <i>TabZIP68</i> to the promoter of <i>TaWaxy</i> was demonstrated by a DLR assay. Expression level of <i>TabZIP68</i> was affected by different plant hormones treated with developing grains. Given its potential involvement in starch synthesis, the <i>TabZIP68</i> gene presents itself as a strong candidate for further investigation.</p>","PeriodicalId":20412,"journal":{"name":"Plant Growth Regulation","volume":"336 1","pages":""},"PeriodicalIF":4.2,"publicationDate":"2024-01-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139580105","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Leaf color is a highly important agronomic trait, and mutants with altered leaf coloration can serve as excellent models for studies on chloroplast development and chlorophyll biosynthesis, enabling the cloning of genes involved in these processes in rice (Oryza sativa L.). In this study, we isolated a stable genetic rice mutant, oryza sativa albino leaf 50 (osal50), from a breeding population of the japonica cultivar GP50. This mutant exhibited a distinctive albino phenotype, with white-striped leaves in seedlings and white panicles at the heading stage. Compared with wild-type GP50, the osal50 mutant showed lower chlorophyll and carotenoid accumulation, together with abnormal chloroplast ultrastructure. Genetic analysis demonstrated that a recessive nuclear gene was responsible for the albino phenotype of osal50, and a map-based cloning strategy delimited OsAL50 to a 160-kb physical interval on chromosome 1, flanked by two single nucleotide polymorphism (SNP) markers, CAPS-08 and CAPS-37, that included 26 putative open reading frames. Sequence and expression analyses revealed LOC_Os01g20110 as the candidate OsAL50 gene, which was confirmed by knockout using CRISPR/Cas9. Subcellular localization and protein sequence analyses suggested that OsAL50 likely encodes an endoribonuclease E-like protein localized to the chloroplasts. Further investigation indicated that OsAL50 plays a vital role in the regulation of photosynthetic pigment metabolism, photosynthesis, and chloroplast biogenesis. In summary, we identified a novel albino mutant that will serve as useful genetic material for studies of chlorophyll biosynthesis and chloroplast development in rice.
{"title":"Fine mapping and identification of a novel albino gene OsAL50 that is required for chlorophyll biosynthesis and chloroplast development in rice (Oryza sativa L.)","authors":"Yuehui Zeng, Xinyu Wei, Changchun Xiao, Rui Zhang, Jianhong Huang, Xuming Xu","doi":"10.1007/s10725-023-01116-8","DOIUrl":"https://doi.org/10.1007/s10725-023-01116-8","url":null,"abstract":"<p>Leaf color is a highly important agronomic trait, and mutants with altered leaf coloration can serve as excellent models for studies on chloroplast development and chlorophyll biosynthesis, enabling the cloning of genes involved in these processes in rice (<i>Oryza sativa</i> L.). In this study, we isolated a stable genetic rice mutant, <i>oryza sativa albino leaf 50</i> (<i>osal50</i>), from a breeding population of the <i>japonica</i> cultivar GP50. This mutant exhibited a distinctive albino phenotype, with white-striped leaves in seedlings and white panicles at the heading stage. Compared with wild-type GP50, the <i>osal50</i> mutant showed lower chlorophyll and carotenoid accumulation, together with abnormal chloroplast ultrastructure. Genetic analysis demonstrated that a recessive nuclear gene was responsible for the albino phenotype of <i>osal50</i>, and a map-based cloning strategy delimited <i>OsAL50</i> to a 160-kb physical interval on chromosome 1, flanked by two single nucleotide polymorphism (SNP) markers, CAPS-08 and CAPS-37, that included 26 putative open reading frames. Sequence and expression analyses revealed <i>LOC_Os01g20110</i> as the candidate <i>OsAL50</i> gene, which was confirmed by knockout using CRISPR/Cas9. Subcellular localization and protein sequence analyses suggested that <i>OsAL50</i> likely encodes an endoribonuclease E-like protein localized to the chloroplasts. Further investigation indicated that <i>OsAL50</i> plays a vital role in the regulation of photosynthetic pigment metabolism, photosynthesis, and chloroplast biogenesis. In summary, we identified a novel albino mutant that will serve as useful genetic material for studies of chlorophyll biosynthesis and chloroplast development in rice.</p>","PeriodicalId":20412,"journal":{"name":"Plant Growth Regulation","volume":"7 1","pages":""},"PeriodicalIF":4.2,"publicationDate":"2024-01-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139555115","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-01-23DOI: 10.1007/s10725-024-01122-4
Ranran Liu, Tong Wang, Qing Li, Lei Wang, Jie Song
Soil salinity seriously restricts agricultural production. Halophytes adapt to saline environments through several strategies, including leaf or stem succulence. Succulence is associated with the increase in cell size or leaf thickness and high water content per unit of surface area, allowing salts to be diluted within the succulent leaves or stems. The proposed mechanisms of NaCl-induced plant tissue succulence include acidification and subsequent induction of cell wall elasticity, increased water uptake, cell turgor pressure, Na+ partitioning in vacuoles, abundance of plasma membrane aquaporins, cell wall formation and extensibility, as well as up-regulation of certain genes (e.g., XTH and CEB1) that control cell expansion and cell wall modification. However, the information on the mechanism of succulence activated by salinity is limited. In this paper, the possible mechanism of salinity-induced succulence, and the role of succulence in plant salt tolerance, are discussed. Understanding the mechanisms that activate succulence in halophytes opens up new opportunities for plant breeding to increase salt tolerance and improve crop productivity in saline soils.
{"title":"The role of tissue succulence in plant salt tolerance: an overview","authors":"Ranran Liu, Tong Wang, Qing Li, Lei Wang, Jie Song","doi":"10.1007/s10725-024-01122-4","DOIUrl":"https://doi.org/10.1007/s10725-024-01122-4","url":null,"abstract":"<p>Soil salinity seriously restricts agricultural production. Halophytes adapt to saline environments through several strategies, including leaf or stem succulence. Succulence is associated with the increase in cell size or leaf thickness and high water content per unit of surface area, allowing salts to be diluted within the succulent leaves or stems. The proposed mechanisms of NaCl-induced plant tissue succulence include acidification and subsequent induction of cell wall elasticity, increased water uptake, cell turgor pressure, Na<sup>+</sup> partitioning in vacuoles, abundance of plasma membrane aquaporins, cell wall formation and extensibility, as well as up-regulation of certain genes (e.g., <i>XTH</i> and <i>CEB1</i>) that control cell expansion and cell wall modification. However, the information on the mechanism of succulence activated by salinity is limited. In this paper, the possible mechanism of salinity-induced succulence, and the role of succulence in plant salt tolerance, are discussed. Understanding the mechanisms that activate succulence in halophytes opens up new opportunities for plant breeding to increase salt tolerance and improve crop productivity in saline soils.</p>","PeriodicalId":20412,"journal":{"name":"Plant Growth Regulation","volume":"10 1","pages":""},"PeriodicalIF":4.2,"publicationDate":"2024-01-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139554899","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-01-23DOI: 10.1007/s10725-024-01126-0
Gaoyin Wu, Qiuying Li, Ya Tan, Shuang Wang, Yingying Liu, Yingliang Liu
Plant organ abscission is a fundamental biological process. and is a stress and evolutionary mechanism formed to adapt to environmental changes due to external signal stimulation or age development. Flower, leaf and fruit abscission are common in production, not only in vivo plants but also in in vitro culture. Breakthroughs have been made in organ abscission studies for model plants and crops in vivo plants, but little is known about organ abscission in in vitro culture, which is a complex biological process. This paper reviews the organ abscission mechanism from the perspectives of cell histology, physiological biochemistry and molecular biology and looks forward to organ abscission research, which aims to fully clarify the plant organ abscission mechanism and provide theoretical and technical guidance for the normal/abnormal abscission of plant organs in actual production.
{"title":"Advances in understanding the mechanisms of organ abscission in vivo and in vitro plants","authors":"Gaoyin Wu, Qiuying Li, Ya Tan, Shuang Wang, Yingying Liu, Yingliang Liu","doi":"10.1007/s10725-024-01126-0","DOIUrl":"https://doi.org/10.1007/s10725-024-01126-0","url":null,"abstract":"<p>Plant organ abscission is a fundamental biological process. and is a stress and evolutionary mechanism formed to adapt to environmental changes due to external signal stimulation or age development. Flower, leaf and fruit abscission are common in production, not only in vivo plants but also in in vitro culture. Breakthroughs have been made in organ abscission studies for model plants and crops in vivo plants, but little is known about organ abscission in in vitro culture, which is a complex biological process. This paper reviews the organ abscission mechanism from the perspectives of cell histology, physiological biochemistry and molecular biology and looks forward to organ abscission research, which aims to fully clarify the plant organ abscission mechanism and provide theoretical and technical guidance for the normal/abnormal abscission of plant organs in actual production.</p>","PeriodicalId":20412,"journal":{"name":"Plant Growth Regulation","volume":"206 1","pages":""},"PeriodicalIF":4.2,"publicationDate":"2024-01-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139555114","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}