Pub Date : 2025-01-20DOI: 10.1016/j.protis.2025.126086
Hitoshi Iida
Stentor pyriformis is a unicellular organism whose inherent green-algal symbionts can be utilized in evolutionary and cytological studies. The cytoplasm contains symbiotic algae and starch granules, which are in constant motion. The habitats of the ciliate S. pyriformis are restricted to a few oligotrophic ponds in Japan. This study aimed to develop a culture medium for long-term incubation based on pond water quality data and to investigate the cytoplasmic streaming of symbiotic algae and starch granules in S. pyriformis. In addition, the involvement of the cytoskeleton and motor proteins in cytoplasmic streaming was examined using microtubule polymerization and dynein ATPase inhibitors. The results indicated that the cytoplasmic streaming in S. pyriformis is associated with the microtubule system. Immunofluorescence and transmission electron microscopy revealed the presence of KM-fibers, bundles of microtubules running longitudinally along the cell surface. These findings suggest a possible link between microtubules and cytoplasmic streaming in S. pyriformis.
{"title":"Cytoplasmic streaming of symbiotic algae in the ciliate Stentor pyriformis.","authors":"Hitoshi Iida","doi":"10.1016/j.protis.2025.126086","DOIUrl":"https://doi.org/10.1016/j.protis.2025.126086","url":null,"abstract":"<p><p>Stentor pyriformis is a unicellular organism whose inherent green-algal symbionts can be utilized in evolutionary and cytological studies. The cytoplasm contains symbiotic algae and starch granules, which are in constant motion. The habitats of the ciliate S. pyriformis are restricted to a few oligotrophic ponds in Japan. This study aimed to develop a culture medium for long-term incubation based on pond water quality data and to investigate the cytoplasmic streaming of symbiotic algae and starch granules in S. pyriformis. In addition, the involvement of the cytoskeleton and motor proteins in cytoplasmic streaming was examined using microtubule polymerization and dynein ATPase inhibitors. The results indicated that the cytoplasmic streaming in S. pyriformis is associated with the microtubule system. Immunofluorescence and transmission electron microscopy revealed the presence of KM-fibers, bundles of microtubules running longitudinally along the cell surface. These findings suggest a possible link between microtubules and cytoplasmic streaming in S. pyriformis.</p>","PeriodicalId":20781,"journal":{"name":"Protist","volume":"176 ","pages":"126086"},"PeriodicalIF":1.9,"publicationDate":"2025-01-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143047707","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-01-17DOI: 10.1016/j.protis.2025.126085
Juan J Ginés-Rivas, Martin Carr
Choanoflagellate species have been taxonomically divided upon the morphological and developmental basis of their extracellular coat (periplast). Species within the order Craspedida possess a purely organic periplast, whereas taxa of the order Acanthoecida have an additional silica based periplast termed the lorica. Whilst small-scale phylogenetic studies have recovered the two orders as monophyletic, recent phylogenomic analyses have rejected the monophyly of the craspedids. These analyses suggest that the freshwater craspedid Codosiga hollandica falls within the earliest branching choanoflagellate lineage; however, it has also been noted that phylogenomic studies result in inconsistent phylogenies, with unstable long-branched species being recovered as basal choanoflagellates. Presented here are phylogenetic analyses, based upon slowly evolving ribosomal proteins, which consistently recover both craspedid monophyly and a derived placement of C. hollandica. The addition of further, long-branched, ribosomal proteins to phylogenetic analyses are shown to generate longer terminal branches and a weakening of the support for Craspedida. The analyses highlight the requirement for an increase in data, in terms of both taxa and gene coverage, to successfully resolve the earliest craspedid branches. In addition, phylogenetically unstable species are identified that are recommended to be omitted from phylogenomic studies as they have the potential to disrupt recovered relationships.
{"title":"Slowly evolving proteins support the monophyly of Craspedida (Choanoflagellatea) and a marine origin of choanoflagellates.","authors":"Juan J Ginés-Rivas, Martin Carr","doi":"10.1016/j.protis.2025.126085","DOIUrl":"https://doi.org/10.1016/j.protis.2025.126085","url":null,"abstract":"<p><p>Choanoflagellate species have been taxonomically divided upon the morphological and developmental basis of their extracellular coat (periplast). Species within the order Craspedida possess a purely organic periplast, whereas taxa of the order Acanthoecida have an additional silica based periplast termed the lorica. Whilst small-scale phylogenetic studies have recovered the two orders as monophyletic, recent phylogenomic analyses have rejected the monophyly of the craspedids. These analyses suggest that the freshwater craspedid Codosiga hollandica falls within the earliest branching choanoflagellate lineage; however, it has also been noted that phylogenomic studies result in inconsistent phylogenies, with unstable long-branched species being recovered as basal choanoflagellates. Presented here are phylogenetic analyses, based upon slowly evolving ribosomal proteins, which consistently recover both craspedid monophyly and a derived placement of C. hollandica. The addition of further, long-branched, ribosomal proteins to phylogenetic analyses are shown to generate longer terminal branches and a weakening of the support for Craspedida. The analyses highlight the requirement for an increase in data, in terms of both taxa and gene coverage, to successfully resolve the earliest craspedid branches. In addition, phylogenetically unstable species are identified that are recommended to be omitted from phylogenomic studies as they have the potential to disrupt recovered relationships.</p>","PeriodicalId":20781,"journal":{"name":"Protist","volume":"176 ","pages":"126085"},"PeriodicalIF":1.9,"publicationDate":"2025-01-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143028971","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-12-24DOI: 10.1016/j.protis.2024.126084
Seung-Hyeon Kim, S D N K Bathige, Donghyun Lee, W A A H Kalhari, Hyoun Joong Kim, Kyung-Il Park
This study discovered the first Asian population of Sphaeroforma nootkatensis (SphX), a member of Mesomycetozoea, in the southern coastal region of South Korea. Although investigating parasites in Pacific oysters (Crassostrea gigas), a single-cell microorganism was isolated from gill tissues. Comprehensive phylogenetic analysis of its 18S rDNA revealed its placement within the order Ichthyophonida, class Mesomycetozoea. SphX formed a distinct cluster within Sphaeroforma spp., separate from Pseudoperkinsus tapetis. Morphological examinations of in vitro cultured cells revealed two distinctive life stages characterized by multilobe and granular sporangium, accompanied by corresponding non-motile larger and motile smaller endospores, respectively. Scanning electron microscope analysis depicted lobular and smooth surfaces on vegetative cells, indicative of differing life cycle stages. Transmission electron microscope observations revealed intriguing features consistent with previous reports on Mesomycetozoea. A prominent fibrillar structure was noted in a vegetative cell. In contrast, smaller endospores were observed with cilia-like structures surrounding the cell wall, indicating their mode of movement. The Ray's fluid thioglycollate medium assay showed that SphX cells were digested, whereas some small endospores remained resistant. This discovery provides novel insights into the life stages of Mesomycetozoans and geographical distribution and underscores the importance of monitoring oyster health for effective aquaculture management.
{"title":"Molecular phylogeny, morphology, and ultrastructure of a Mesomycetozoea member, Sphaeroforma nootkatensis isolated from Pacific oyster, Crassostrea gigas, on the Southern coast of Korea.","authors":"Seung-Hyeon Kim, S D N K Bathige, Donghyun Lee, W A A H Kalhari, Hyoun Joong Kim, Kyung-Il Park","doi":"10.1016/j.protis.2024.126084","DOIUrl":"https://doi.org/10.1016/j.protis.2024.126084","url":null,"abstract":"<p><p>This study discovered the first Asian population of Sphaeroforma nootkatensis (SphX), a member of Mesomycetozoea, in the southern coastal region of South Korea. Although investigating parasites in Pacific oysters (Crassostrea gigas), a single-cell microorganism was isolated from gill tissues. Comprehensive phylogenetic analysis of its 18S rDNA revealed its placement within the order Ichthyophonida, class Mesomycetozoea. SphX formed a distinct cluster within Sphaeroforma spp., separate from Pseudoperkinsus tapetis. Morphological examinations of in vitro cultured cells revealed two distinctive life stages characterized by multilobe and granular sporangium, accompanied by corresponding non-motile larger and motile smaller endospores, respectively. Scanning electron microscope analysis depicted lobular and smooth surfaces on vegetative cells, indicative of differing life cycle stages. Transmission electron microscope observations revealed intriguing features consistent with previous reports on Mesomycetozoea. A prominent fibrillar structure was noted in a vegetative cell. In contrast, smaller endospores were observed with cilia-like structures surrounding the cell wall, indicating their mode of movement. The Ray's fluid thioglycollate medium assay showed that SphX cells were digested, whereas some small endospores remained resistant. This discovery provides novel insights into the life stages of Mesomycetozoans and geographical distribution and underscores the importance of monitoring oyster health for effective aquaculture management.</p>","PeriodicalId":20781,"journal":{"name":"Protist","volume":"176 ","pages":"126084"},"PeriodicalIF":1.9,"publicationDate":"2024-12-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142915088","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-12-17DOI: 10.1016/j.protis.2024.126083
Komal A Chandarana, Sapna Chandwani, Harshida A Gamit, Hetvi Naik, Natarajan Amaresan
Reclamation of petroleum-polluted environments is a key issue for today and in the future, as our reliance on oil will persist for decades. An eco-friendly solution is to use microbes that play a role in petroleum-hydrocarbon degradation. However, as hydrocarbon degradation involves a multi-step process involving different functional groups, focusing only on finding efficient bacterial species will not be the complete solution. Heterotrophic protists are unicellular eukaryotic microorganisms that could play a role in remediation of ecosystems by enhancing petroleum-hydrocarbon degradation through different mechanisms. This mini-review discusses the importance of protists in the degradation of petroleum-hydrocarbon and their predatory impact on hydrocarbon-degrading bacterial communities. Additionally, the effect of hydrocarbons on protistan community structure and protistan cells is discussed. A better understanding of the puzzle hydrocarbon-protist interactions will significantly increase our knowledge of how to employ these microbes for bioremediation of hydrocarbon pollutants.
{"title":"Environmental interactions between protists and bacterial communities in hydrocarbon degradation.","authors":"Komal A Chandarana, Sapna Chandwani, Harshida A Gamit, Hetvi Naik, Natarajan Amaresan","doi":"10.1016/j.protis.2024.126083","DOIUrl":"https://doi.org/10.1016/j.protis.2024.126083","url":null,"abstract":"<p><p>Reclamation of petroleum-polluted environments is a key issue for today and in the future, as our reliance on oil will persist for decades. An eco-friendly solution is to use microbes that play a role in petroleum-hydrocarbon degradation. However, as hydrocarbon degradation involves a multi-step process involving different functional groups, focusing only on finding efficient bacterial species will not be the complete solution. Heterotrophic protists are unicellular eukaryotic microorganisms that could play a role in remediation of ecosystems by enhancing petroleum-hydrocarbon degradation through different mechanisms. This mini-review discusses the importance of protists in the degradation of petroleum-hydrocarbon and their predatory impact on hydrocarbon-degrading bacterial communities. Additionally, the effect of hydrocarbons on protistan community structure and protistan cells is discussed. A better understanding of the puzzle hydrocarbon-protist interactions will significantly increase our knowledge of how to employ these microbes for bioremediation of hydrocarbon pollutants.</p>","PeriodicalId":20781,"journal":{"name":"Protist","volume":"176 ","pages":"126083"},"PeriodicalIF":1.9,"publicationDate":"2024-12-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142872800","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-12-01DOI: 10.1016/j.protis.2024.126073
Yan Xu , Xiayi Chen , Michael Melkonian , Sibo Wang , Sunil Kumar Sahu
Desmodesmus (Sphaeropleales, Chlorophyceae) is a genus of freshwater green algae widely distributed in aquatic ecosystems and known for its potential in biotechnology and bioremediation. We present the complete chloroplast genome sequences of two Desmodesmus species, D. hystrix and D. perforatus. Comparative analysis revealed significant differences in their quadripartite structures, particularly in the lengths of the small single copy regions. We observed variations in G + C content across genomic regions, with inverted repeat regions showing a higher G + C content. Microsatellite analysis revealed that A/T mononucleotides were the most abundant type, while dispersed repeat analysis suggested a potential link to expansion of the single-copy region in D. perforatus. Gene annotation, codon usage analysis, and comparison of genome rearrangement highlighted both similarities and differences between the species. Nucleotide diversity analysis revealed higher variability in intergenic regions than in coding regions, with IR regions displaying relative conservation. Comparative analyses of genomes and IR border arrangements demonstrated that the Desmodesmus species exhibit substantial differences in genome structure and gene arrangement among Scenedesmaceae. Phylogenetic analysis, based on 51 single-copy genes from 34 species of Sphaeropleales provided additional information about phylogenetic relationships within Sphaeropleales. These findings contribute to our understanding of comparative plastid genomics in green algae.
{"title":"Comparative chloroplast genome analysis of two Desmodesmus species reveals genome diversity within Scenedesmaceae (Sphaeropleales, Chlorophyceae)","authors":"Yan Xu , Xiayi Chen , Michael Melkonian , Sibo Wang , Sunil Kumar Sahu","doi":"10.1016/j.protis.2024.126073","DOIUrl":"10.1016/j.protis.2024.126073","url":null,"abstract":"<div><div><em>Desmodesmus</em> (Sphaeropleales, Chlorophyceae) is a genus of freshwater green algae widely distributed in aquatic ecosystems and known for its potential in biotechnology and bioremediation. We present the complete chloroplast genome sequences of two <em>Desmodesmus</em> species, <em>D. hystrix</em> and <em>D. perforatus</em>. Comparative analysis revealed significant differences in their quadripartite structures, particularly in the lengths of the small single copy regions. We observed variations in G + C content across genomic regions, with inverted repeat regions showing a higher G + C content. Microsatellite analysis revealed that A/T mononucleotides were the most abundant type, while dispersed repeat analysis suggested a potential link to expansion of the single-copy region in <em>D. perforatus</em>. Gene annotation, codon usage analysis, and comparison of genome rearrangement highlighted both similarities and differences between the species. Nucleotide diversity analysis revealed higher variability in intergenic regions than in coding regions, with IR regions displaying relative conservation. Comparative analyses of genomes and IR border arrangements demonstrated that the <em>Desmodesmus</em> species exhibit substantial differences in genome structure and gene arrangement among Scenedesmaceae. Phylogenetic analysis, based on 51 single-copy genes from 34 species of Sphaeropleales provided additional information about phylogenetic relationships within Sphaeropleales. These findings contribute to our understanding of comparative plastid genomics in green algae.</div></div>","PeriodicalId":20781,"journal":{"name":"Protist","volume":"175 6","pages":"Article 126073"},"PeriodicalIF":1.9,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142747697","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Morphology of seven chrysophycean stomatocysts was studied using scanning electron microscopy. All stomatocysts were recorded from the shallow lakes located in the Steppe zone of South Urals. Four morphotypes (stomatocyst 373 Taylor et Smol, stomatocyst 68 Van de Vijver et Beyens, stomatocyst 99 Pang et Wang and stomatocyst 101 Pang et Wang Forma B) are rare and reported for the first time in Russia. New observations on the formation of the cyst ornamentation allowed us to amend the descriptions of two morphotypes. Three stomatocysts are described as new to science. Morphological variability of all seven morphotypes are illustrated and discussed.
用扫描电镜观察了7个菊花藻口囊的形态。所有口囊均来自南乌拉尔草原区浅水湖泊。四种形态(口囊373 Taylor et Smol,口囊68 Van de Vijver et Beyens,口囊99 Pang et Wang和口囊101 Pang et Wang Forma B)在俄罗斯罕见且首次报道。对囊肿纹饰形成的新观察使我们能够修正两种形态的描述。三种口囊肿被描述为科学上的新事物。所有七种形态型的形态变异都被说明和讨论。
{"title":"New and noteworthy chrysophycean stomatocysts from the Steppe zone of South Urals (Russia) with comments on the morphological variability.","authors":"Marina Ignatenko, Tatyana Yatsenko-Stepanova, Dmitry Kapustin","doi":"10.1016/j.protis.2024.126075","DOIUrl":"https://doi.org/10.1016/j.protis.2024.126075","url":null,"abstract":"<p><p>Morphology of seven chrysophycean stomatocysts was studied using scanning electron microscopy. All stomatocysts were recorded from the shallow lakes located in the Steppe zone of South Urals. Four morphotypes (stomatocyst 373 Taylor et Smol, stomatocyst 68 Van de Vijver et Beyens, stomatocyst 99 Pang et Wang and stomatocyst 101 Pang et Wang Forma B) are rare and reported for the first time in Russia. New observations on the formation of the cyst ornamentation allowed us to amend the descriptions of two morphotypes. Three stomatocysts are described as new to science. Morphological variability of all seven morphotypes are illustrated and discussed.</p>","PeriodicalId":20781,"journal":{"name":"Protist","volume":"176 ","pages":"126075"},"PeriodicalIF":1.9,"publicationDate":"2024-11-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142771610","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-27DOI: 10.1016/j.protis.2024.126072
David J.S. Montagnes
{"title":"Protists and Society: A report on the 2024 autumn meeting of Protistology-UK, at the natural history museum, London","authors":"David J.S. Montagnes","doi":"10.1016/j.protis.2024.126072","DOIUrl":"10.1016/j.protis.2024.126072","url":null,"abstract":"","PeriodicalId":20781,"journal":{"name":"Protist","volume":"176 ","pages":"Article 126072"},"PeriodicalIF":1.9,"publicationDate":"2024-11-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142756628","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-27DOI: 10.1016/j.protis.2024.126074
Atef Omar, Jiwon Jung, Gaeul Lee, Jae-Ho Jung
The morphology, morphogenesis, molecular phylogeny, and the resting cyst morphology of the freshwater ciliate, Crassohymena primicirrata (Berger and Foissner, 1987) n. gen., n. comb., found in samples collected from South Korea, were investigated. The Korean two populations observed are identical to each other and are highly similar to the type population showing only few and minor differences in the size and arrangement of cortical granules and the length of dorsal kinety 4. The new genus Crassohymena n. gen. is established and characterized by a number of morphological and ontogenetic features: the thick undulating membranes comprising three or four rows of kinetosomes and in Cyrtohymena pattern; the anteriorly distinctly displaced transverse cirri; the posteriorly set-off cirrus V/3; the opisthe's anlagen IV-VI originate from cirri IV/2, V/4, and V/3, respectively; the proter's anlagen IV-VI originate from cirrus IV/3; and the enormous anlage I in each daughter cell. Phylogenetic analyses based on 18S rRNA gene sequences show that Crassohymena primicirrata n. gen., n. comb. is separated from all other morphologically most similar taxa and forms an adelphotaxon to the clade containing sequences of the families Neokeronopsidae and Spirofilidae, and the two oxytrichid genera Australocirrus and Notohymena.
淡水纤毛虫Crassohymena primicirrata的形态、形态发生、分子系统发育和静息囊形态(Berger and Foissner, 1987) n. gen. n. comb。从韩国采集的样本中发现的。观察到的朝鲜两个种群彼此完全相同,与型种群高度相似,在皮质颗粒的大小和排列以及背部运动的长度上只有很少和微小的差异4。新属(Crassohymena n. geng .)被建立,并具有许多形态学和个体发生特征:由三或四行动体组成的厚波状膜和细胞膜模式;前面明显移位的横卷;后抵消卷云V/3;蛇的胶原IV- vi分别来源于cirri IV/2、V/4和V/3;蛋白原IV- vi源自IV/3型卷病毒;以及每个子细胞中巨大的细胞I。基于18S rRNA基因序列的系统发育分析表明,原膜虫属(Crassohymena primicirrata n. gen., n. comb.);从所有其他形态上最相似的分类群中分离出来,形成了一个adelphotaxon,它的进化枝包含了Neokeronopsidae和Spirofilidae家族的序列,以及两个oxytrichid属australcirrus和Notohymena。
{"title":"Integrative studies shed light on the pseudocryptic genus Crassohymena n. gen. (Protozoa, Ciliophora).","authors":"Atef Omar, Jiwon Jung, Gaeul Lee, Jae-Ho Jung","doi":"10.1016/j.protis.2024.126074","DOIUrl":"https://doi.org/10.1016/j.protis.2024.126074","url":null,"abstract":"<p><p>The morphology, morphogenesis, molecular phylogeny, and the resting cyst morphology of the freshwater ciliate, Crassohymena primicirrata (Berger and Foissner, 1987) n. gen., n. comb., found in samples collected from South Korea, were investigated. The Korean two populations observed are identical to each other and are highly similar to the type population showing only few and minor differences in the size and arrangement of cortical granules and the length of dorsal kinety 4. The new genus Crassohymena n. gen. is established and characterized by a number of morphological and ontogenetic features: the thick undulating membranes comprising three or four rows of kinetosomes and in Cyrtohymena pattern; the anteriorly distinctly displaced transverse cirri; the posteriorly set-off cirrus V/3; the opisthe's anlagen IV-VI originate from cirri IV/2, V/4, and V/3, respectively; the proter's anlagen IV-VI originate from cirrus IV/3; and the enormous anlage I in each daughter cell. Phylogenetic analyses based on 18S rRNA gene sequences show that Crassohymena primicirrata n. gen., n. comb. is separated from all other morphologically most similar taxa and forms an adelphotaxon to the clade containing sequences of the families Neokeronopsidae and Spirofilidae, and the two oxytrichid genera Australocirrus and Notohymena.</p>","PeriodicalId":20781,"journal":{"name":"Protist","volume":"176 ","pages":"126074"},"PeriodicalIF":1.9,"publicationDate":"2024-11-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142780703","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The mitochondrial genomes of dinoflagellate protists are remarkable for their highly fragmented and heterogeneous organization. Early attempts to determine their structure without ‘next-generation’ DNA sequencing failed to recover a defined genome. Still, it coincided in showing that the proteins coding genes, three in total, and parts of the ribosomal RNA genes were spread across a diffuse assortment of small linear fragments. In contrast, a recent study employed Illumina sequencing to assemble a 326 kbp long single-molecule, circular mitochondrial genome in the symbiotic dinoflagellate Breviolum minutum. Here, we used a combination of short- and long-read massively-parallel DNA sequencing to analyze further the mitochondrial DNA of the early-branching dinoflagellate Oxyrrhis marina. We found that the mitochondrial genome of O. marina consists of 3 linear chromosomes sized 15.9, 33.8 and 40.6 kbp for a total of 90.3 kbp. It contains the cox1, cox3 and cob genes, the same three proteins encoded in the mitochondrion of all myzozoans (Apicomplexa and Dinophyceae), some fragments of ribosomal RNA genes as well as many non-functional gene fragments and extensive noncoding DNA. Our analysis unveiled segments syntenic patterns and rearrangements encompassing coding and non-coding regions, suggesting that recombination is a pervasive process driving the evolution of these genomes.
{"title":"Long-read DNA sequencing reveals the organization of the mitochondrial genome in the early-branching dinoflagellate Oxyrrhis marina.","authors":"Ronie Haro , Nikita Walunjkar , Soham Jorapur , Claudio H. Slamovits","doi":"10.1016/j.protis.2024.126071","DOIUrl":"10.1016/j.protis.2024.126071","url":null,"abstract":"<div><div>The mitochondrial genomes of dinoflagellate protists are remarkable for their highly fragmented and heterogeneous organization. Early attempts to determine their structure without ‘next-generation’ DNA sequencing failed to recover a defined genome. Still, it coincided in showing that the proteins coding genes, three in total, and parts of the ribosomal RNA genes were spread across a diffuse assortment of small linear fragments. In contrast, a recent study employed Illumina sequencing to assemble a 326 kbp long single-molecule, circular mitochondrial genome in the symbiotic dinoflagellate <em>Breviolum minutum</em>. Here, we used a combination of short- and long-read massively-parallel DNA sequencing to analyze further the mitochondrial DNA of the early-branching dinoflagellate <em>Oxyrrhis marina</em>. We found that the mitochondrial genome of <em>O. marina</em> consists of 3 linear chromosomes sized 15.9, 33.8 and 40.6 kbp for a total of 90.3 kbp. It contains the <em>cox</em>1, <em>cox</em>3 and <em>cob</em> genes, the same three proteins encoded in the mitochondrion of all myzozoans (Apicomplexa and Dinophyceae), some fragments of ribosomal RNA genes as well as many non-functional gene fragments and extensive noncoding DNA. Our analysis unveiled segments syntenic patterns and rearrangements encompassing coding and non-coding regions, suggesting that recombination is a pervasive process driving the evolution of these genomes.</div></div>","PeriodicalId":20781,"journal":{"name":"Protist","volume":"175 6","pages":"Article 126071"},"PeriodicalIF":1.9,"publicationDate":"2024-11-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142720748","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Mutimo cylindricus gametes have two flagella with different structures : an anterior and a posterior flagellum. Their flagellar waveforms are regulated by calcium ions through various mechanisms, however the factors involved in this regulation remain largely unknown To elucidate the molecular basis underlying the difference between the two flagella, we performed a flagellar proteomic analysis of male M. cylindricus gametes. We identified 848 proteins shared with Ectocarpus siliculosus, including 28 calcium-binding proteins. Among the EF-hand proteins, a 111 kDa protein showed predominant localization along the anterior flagellum. Immunogold localization suggested that this protein is associated with outer doublet microtubules. This is the first report to show heterogeneous localization of a calcium-binding protein between two flagellar axonemes and suggests that calcium-binding proteins are involved in the specific regulation of the anterior flagellum.
{"title":"Flagellar proteomic analysis of the brown alga Mutimo cylindricus revealed a novel calcium-binding protein abundantly localized in the anterior flagellum","authors":"Nana Kinoshita-Terauchi , Kogiku Shiba , Makoto Terauchi , Hideki Noguchi , Kazuo Inaba","doi":"10.1016/j.protis.2024.126070","DOIUrl":"10.1016/j.protis.2024.126070","url":null,"abstract":"<div><div><em>Mutimo cylindricus</em> gametes have two flagella with different structures : an anterior and a posterior flagellum. Their flagellar waveforms are regulated by calcium ions through various mechanisms, however the factors involved in this regulation remain largely unknown To elucidate the molecular basis underlying the difference between the two flagella, we performed a flagellar proteomic analysis of male <em>M. cylindricus</em> gametes. We identified 848 proteins shared with <em>Ectocarpus siliculosus</em>, including 28 calcium-binding proteins. Among the EF-hand proteins, a 111 kDa protein showed predominant localization along the anterior flagellum. Immunogold localization suggested that this protein is associated with outer doublet microtubules. This is the first report to show heterogeneous localization of a calcium-binding protein between two flagellar axonemes and suggests that calcium-binding proteins are involved in the specific regulation of the anterior flagellum.</div></div>","PeriodicalId":20781,"journal":{"name":"Protist","volume":"175 6","pages":"Article 126070"},"PeriodicalIF":1.9,"publicationDate":"2024-10-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142578227","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}