首页 > 最新文献

Protist最新文献

英文 中文
Cytoplasmic streaming of symbiotic algae in the ciliate Stentor pyriformis.
IF 1.9 3区 生物学 Q4 MICROBIOLOGY Pub Date : 2025-01-20 DOI: 10.1016/j.protis.2025.126086
Hitoshi Iida

Stentor pyriformis is a unicellular organism whose inherent green-algal symbionts can be utilized in evolutionary and cytological studies. The cytoplasm contains symbiotic algae and starch granules, which are in constant motion. The habitats of the ciliate S. pyriformis are restricted to a few oligotrophic ponds in Japan. This study aimed to develop a culture medium for long-term incubation based on pond water quality data and to investigate the cytoplasmic streaming of symbiotic algae and starch granules in S. pyriformis. In addition, the involvement of the cytoskeleton and motor proteins in cytoplasmic streaming was examined using microtubule polymerization and dynein ATPase inhibitors. The results indicated that the cytoplasmic streaming in S. pyriformis is associated with the microtubule system. Immunofluorescence and transmission electron microscopy revealed the presence of KM-fibers, bundles of microtubules running longitudinally along the cell surface. These findings suggest a possible link between microtubules and cytoplasmic streaming in S. pyriformis.

{"title":"Cytoplasmic streaming of symbiotic algae in the ciliate Stentor pyriformis.","authors":"Hitoshi Iida","doi":"10.1016/j.protis.2025.126086","DOIUrl":"https://doi.org/10.1016/j.protis.2025.126086","url":null,"abstract":"<p><p>Stentor pyriformis is a unicellular organism whose inherent green-algal symbionts can be utilized in evolutionary and cytological studies. The cytoplasm contains symbiotic algae and starch granules, which are in constant motion. The habitats of the ciliate S. pyriformis are restricted to a few oligotrophic ponds in Japan. This study aimed to develop a culture medium for long-term incubation based on pond water quality data and to investigate the cytoplasmic streaming of symbiotic algae and starch granules in S. pyriformis. In addition, the involvement of the cytoskeleton and motor proteins in cytoplasmic streaming was examined using microtubule polymerization and dynein ATPase inhibitors. The results indicated that the cytoplasmic streaming in S. pyriformis is associated with the microtubule system. Immunofluorescence and transmission electron microscopy revealed the presence of KM-fibers, bundles of microtubules running longitudinally along the cell surface. These findings suggest a possible link between microtubules and cytoplasmic streaming in S. pyriformis.</p>","PeriodicalId":20781,"journal":{"name":"Protist","volume":"176 ","pages":"126086"},"PeriodicalIF":1.9,"publicationDate":"2025-01-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143047707","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Slowly evolving proteins support the monophyly of Craspedida (Choanoflagellatea) and a marine origin of choanoflagellates.
IF 1.9 3区 生物学 Q4 MICROBIOLOGY Pub Date : 2025-01-17 DOI: 10.1016/j.protis.2025.126085
Juan J Ginés-Rivas, Martin Carr

Choanoflagellate species have been taxonomically divided upon the morphological and developmental basis of their extracellular coat (periplast). Species within the order Craspedida possess a purely organic periplast, whereas taxa of the order Acanthoecida have an additional silica based periplast termed the lorica. Whilst small-scale phylogenetic studies have recovered the two orders as monophyletic, recent phylogenomic analyses have rejected the monophyly of the craspedids. These analyses suggest that the freshwater craspedid Codosiga hollandica falls within the earliest branching choanoflagellate lineage; however, it has also been noted that phylogenomic studies result in inconsistent phylogenies, with unstable long-branched species being recovered as basal choanoflagellates. Presented here are phylogenetic analyses, based upon slowly evolving ribosomal proteins, which consistently recover both craspedid monophyly and a derived placement of C. hollandica. The addition of further, long-branched, ribosomal proteins to phylogenetic analyses are shown to generate longer terminal branches and a weakening of the support for Craspedida. The analyses highlight the requirement for an increase in data, in terms of both taxa and gene coverage, to successfully resolve the earliest craspedid branches. In addition, phylogenetically unstable species are identified that are recommended to be omitted from phylogenomic studies as they have the potential to disrupt recovered relationships.

{"title":"Slowly evolving proteins support the monophyly of Craspedida (Choanoflagellatea) and a marine origin of choanoflagellates.","authors":"Juan J Ginés-Rivas, Martin Carr","doi":"10.1016/j.protis.2025.126085","DOIUrl":"https://doi.org/10.1016/j.protis.2025.126085","url":null,"abstract":"<p><p>Choanoflagellate species have been taxonomically divided upon the morphological and developmental basis of their extracellular coat (periplast). Species within the order Craspedida possess a purely organic periplast, whereas taxa of the order Acanthoecida have an additional silica based periplast termed the lorica. Whilst small-scale phylogenetic studies have recovered the two orders as monophyletic, recent phylogenomic analyses have rejected the monophyly of the craspedids. These analyses suggest that the freshwater craspedid Codosiga hollandica falls within the earliest branching choanoflagellate lineage; however, it has also been noted that phylogenomic studies result in inconsistent phylogenies, with unstable long-branched species being recovered as basal choanoflagellates. Presented here are phylogenetic analyses, based upon slowly evolving ribosomal proteins, which consistently recover both craspedid monophyly and a derived placement of C. hollandica. The addition of further, long-branched, ribosomal proteins to phylogenetic analyses are shown to generate longer terminal branches and a weakening of the support for Craspedida. The analyses highlight the requirement for an increase in data, in terms of both taxa and gene coverage, to successfully resolve the earliest craspedid branches. In addition, phylogenetically unstable species are identified that are recommended to be omitted from phylogenomic studies as they have the potential to disrupt recovered relationships.</p>","PeriodicalId":20781,"journal":{"name":"Protist","volume":"176 ","pages":"126085"},"PeriodicalIF":1.9,"publicationDate":"2025-01-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143028971","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Molecular phylogeny, morphology, and ultrastructure of a Mesomycetozoea member, Sphaeroforma nootkatensis isolated from Pacific oyster, Crassostrea gigas, on the Southern coast of Korea. 从朝鲜南部海岸的太平洋牡蛎中分离出的一种中菌科成员Sphaeroforma nootkatensis的分子系统发育、形态和超微结构
IF 1.9 3区 生物学 Q4 MICROBIOLOGY Pub Date : 2024-12-24 DOI: 10.1016/j.protis.2024.126084
Seung-Hyeon Kim, S D N K Bathige, Donghyun Lee, W A A H Kalhari, Hyoun Joong Kim, Kyung-Il Park

This study discovered the first Asian population of Sphaeroforma nootkatensis (SphX), a member of Mesomycetozoea, in the southern coastal region of South Korea. Although investigating parasites in Pacific oysters (Crassostrea gigas), a single-cell microorganism was isolated from gill tissues. Comprehensive phylogenetic analysis of its 18S rDNA revealed its placement within the order Ichthyophonida, class Mesomycetozoea. SphX formed a distinct cluster within Sphaeroforma spp., separate from Pseudoperkinsus tapetis. Morphological examinations of in vitro cultured cells revealed two distinctive life stages characterized by multilobe and granular sporangium, accompanied by corresponding non-motile larger and motile smaller endospores, respectively. Scanning electron microscope analysis depicted lobular and smooth surfaces on vegetative cells, indicative of differing life cycle stages. Transmission electron microscope observations revealed intriguing features consistent with previous reports on Mesomycetozoea. A prominent fibrillar structure was noted in a vegetative cell. In contrast, smaller endospores were observed with cilia-like structures surrounding the cell wall, indicating their mode of movement. The Ray's fluid thioglycollate medium assay showed that SphX cells were digested, whereas some small endospores remained resistant. This discovery provides novel insights into the life stages of Mesomycetozoans and geographical distribution and underscores the importance of monitoring oyster health for effective aquaculture management.

本研究在韩国南部沿海地区发现了中菌科Sphaeroforma nootkatensis (SphX)的第一个亚洲种群。在研究太平洋牡蛎(长牡蛎)的寄生虫时,从鳃组织中分离出一种单细胞微生物。对其18S rDNA的综合系统发育分析表明其属于中菌纲鱼舌目。SphX在Sphaeroforma spp.中形成了一个明显的簇,与Pseudoperkinsus tapetis分开。体外培养细胞的形态学检查显示,孢子囊有多叶状和粒状两个不同的生命阶段,并伴有相应的非运动性大孢子和运动性小孢子。扫描电子显微镜分析描绘了营养细胞的小叶和光滑表面,表明不同的生命周期阶段。透射电镜观察显示了与先前报道一致的有趣特征。在营养细胞中可见明显的纤维状结构。相比之下,较小的内孢子在细胞壁周围观察到纤毛状结构,表明它们的运动方式。Ray的液体巯基乙酸盐培养基试验显示SphX细胞被消化,而一些小的内生孢子仍具有抗性。这一发现为中菌动物的生命阶段和地理分布提供了新的见解,并强调了监测牡蛎健康对有效水产养殖管理的重要性。
{"title":"Molecular phylogeny, morphology, and ultrastructure of a Mesomycetozoea member, Sphaeroforma nootkatensis isolated from Pacific oyster, Crassostrea gigas, on the Southern coast of Korea.","authors":"Seung-Hyeon Kim, S D N K Bathige, Donghyun Lee, W A A H Kalhari, Hyoun Joong Kim, Kyung-Il Park","doi":"10.1016/j.protis.2024.126084","DOIUrl":"https://doi.org/10.1016/j.protis.2024.126084","url":null,"abstract":"<p><p>This study discovered the first Asian population of Sphaeroforma nootkatensis (SphX), a member of Mesomycetozoea, in the southern coastal region of South Korea. Although investigating parasites in Pacific oysters (Crassostrea gigas), a single-cell microorganism was isolated from gill tissues. Comprehensive phylogenetic analysis of its 18S rDNA revealed its placement within the order Ichthyophonida, class Mesomycetozoea. SphX formed a distinct cluster within Sphaeroforma spp., separate from Pseudoperkinsus tapetis. Morphological examinations of in vitro cultured cells revealed two distinctive life stages characterized by multilobe and granular sporangium, accompanied by corresponding non-motile larger and motile smaller endospores, respectively. Scanning electron microscope analysis depicted lobular and smooth surfaces on vegetative cells, indicative of differing life cycle stages. Transmission electron microscope observations revealed intriguing features consistent with previous reports on Mesomycetozoea. A prominent fibrillar structure was noted in a vegetative cell. In contrast, smaller endospores were observed with cilia-like structures surrounding the cell wall, indicating their mode of movement. The Ray's fluid thioglycollate medium assay showed that SphX cells were digested, whereas some small endospores remained resistant. This discovery provides novel insights into the life stages of Mesomycetozoans and geographical distribution and underscores the importance of monitoring oyster health for effective aquaculture management.</p>","PeriodicalId":20781,"journal":{"name":"Protist","volume":"176 ","pages":"126084"},"PeriodicalIF":1.9,"publicationDate":"2024-12-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142915088","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Environmental interactions between protists and bacterial communities in hydrocarbon degradation. 碳氢化合物降解过程中原生生物与细菌群落之间的环境相互作用。
IF 1.9 3区 生物学 Q4 MICROBIOLOGY Pub Date : 2024-12-17 DOI: 10.1016/j.protis.2024.126083
Komal A Chandarana, Sapna Chandwani, Harshida A Gamit, Hetvi Naik, Natarajan Amaresan

Reclamation of petroleum-polluted environments is a key issue for today and in the future, as our reliance on oil will persist for decades. An eco-friendly solution is to use microbes that play a role in petroleum-hydrocarbon degradation. However, as hydrocarbon degradation involves a multi-step process involving different functional groups, focusing only on finding efficient bacterial species will not be the complete solution. Heterotrophic protists are unicellular eukaryotic microorganisms that could play a role in remediation of ecosystems by enhancing petroleum-hydrocarbon degradation through different mechanisms. This mini-review discusses the importance of protists in the degradation of petroleum-hydrocarbon and their predatory impact on hydrocarbon-degrading bacterial communities. Additionally, the effect of hydrocarbons on protistan community structure and protistan cells is discussed. A better understanding of the puzzle hydrocarbon-protist interactions will significantly increase our knowledge of how to employ these microbes for bioremediation of hydrocarbon pollutants.

由于我们对石油的依赖将持续几十年,石油污染环境的回收是当今和未来的一个关键问题。一个生态友好的解决方案是使用微生物,它们在石油碳氢化合物的降解中发挥作用。然而,由于碳氢化合物的降解是一个涉及不同官能团的多步骤过程,只关注于寻找有效的细菌种类并不是完整的解决方案。异养原生生物是一种单细胞真核微生物,可以通过不同的机制促进石油烃的降解,在生态系统中发挥修复作用。本文综述了原生生物在石油烃降解中的重要作用及其对烃类降解细菌群落的影响。此外,还讨论了碳氢化合物对原生生物群落结构和原生生物细胞的影响。更好地理解碳氢化合物与原生生物之间的相互作用,将大大增加我们对如何利用这些微生物对碳氢化合物污染物进行生物修复的认识。
{"title":"Environmental interactions between protists and bacterial communities in hydrocarbon degradation.","authors":"Komal A Chandarana, Sapna Chandwani, Harshida A Gamit, Hetvi Naik, Natarajan Amaresan","doi":"10.1016/j.protis.2024.126083","DOIUrl":"https://doi.org/10.1016/j.protis.2024.126083","url":null,"abstract":"<p><p>Reclamation of petroleum-polluted environments is a key issue for today and in the future, as our reliance on oil will persist for decades. An eco-friendly solution is to use microbes that play a role in petroleum-hydrocarbon degradation. However, as hydrocarbon degradation involves a multi-step process involving different functional groups, focusing only on finding efficient bacterial species will not be the complete solution. Heterotrophic protists are unicellular eukaryotic microorganisms that could play a role in remediation of ecosystems by enhancing petroleum-hydrocarbon degradation through different mechanisms. This mini-review discusses the importance of protists in the degradation of petroleum-hydrocarbon and their predatory impact on hydrocarbon-degrading bacterial communities. Additionally, the effect of hydrocarbons on protistan community structure and protistan cells is discussed. A better understanding of the puzzle hydrocarbon-protist interactions will significantly increase our knowledge of how to employ these microbes for bioremediation of hydrocarbon pollutants.</p>","PeriodicalId":20781,"journal":{"name":"Protist","volume":"176 ","pages":"126083"},"PeriodicalIF":1.9,"publicationDate":"2024-12-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142872800","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Comparative chloroplast genome analysis of two Desmodesmus species reveals genome diversity within Scenedesmaceae (Sphaeropleales, Chlorophyceae) 两种盘尾藻叶绿体基因组的比较分析揭示了盘尾藻科(Sphaeropleales,吊兰科)基因组多样性
IF 1.9 3区 生物学 Q4 MICROBIOLOGY Pub Date : 2024-12-01 DOI: 10.1016/j.protis.2024.126073
Yan Xu , Xiayi Chen , Michael Melkonian , Sibo Wang , Sunil Kumar Sahu
Desmodesmus (Sphaeropleales, Chlorophyceae) is a genus of freshwater green algae widely distributed in aquatic ecosystems and known for its potential in biotechnology and bioremediation. We present the complete chloroplast genome sequences of two Desmodesmus species, D. hystrix and D. perforatus. Comparative analysis revealed significant differences in their quadripartite structures, particularly in the lengths of the small single copy regions. We observed variations in G + C content across genomic regions, with inverted repeat regions showing a higher G + C content. Microsatellite analysis revealed that A/T mononucleotides were the most abundant type, while dispersed repeat analysis suggested a potential link to expansion of the single-copy region in D. perforatus. Gene annotation, codon usage analysis, and comparison of genome rearrangement highlighted both similarities and differences between the species. Nucleotide diversity analysis revealed higher variability in intergenic regions than in coding regions, with IR regions displaying relative conservation. Comparative analyses of genomes and IR border arrangements demonstrated that the Desmodesmus species exhibit substantial differences in genome structure and gene arrangement among Scenedesmaceae. Phylogenetic analysis, based on 51 single-copy genes from 34 species of Sphaeropleales provided additional information about phylogenetic relationships within Sphaeropleales. These findings contribute to our understanding of comparative plastid genomics in green algae.
鳞藻是一种广泛分布于水生生态系统中的淡水绿藻属,在生物技术和生物修复方面具有重要的应用价值。本文报道了两种连线虫的叶绿体基因组序列,即hystrix和perforatus。比较分析显示,它们的四分体结构存在显著差异,特别是在小的单拷贝区域的长度上。我们观察到不同基因组区域的G + C含量存在差异,反向重复区域的G + C含量较高。微卫星分析显示,A/T单核苷酸是最丰富的类型,而分散重复分析表明,A/T单拷贝区可能与孔雀桃单拷贝区扩展有关。基因注释、密码子使用分析和基因组重排比较突出了物种之间的相似性和差异性。核苷酸多样性分析显示,基因间区比编码区具有更高的变异性,红外区表现出相对的保守性。基因组和红外边界排列的比较分析表明,排尾蝇在基因组结构和基因排列上存在显著差异。对34种球梨属植物的51个单拷贝基因进行系统发育分析,进一步揭示了球梨属植物的系统发育关系。这些发现有助于我们对绿藻比较质体基因组学的理解。
{"title":"Comparative chloroplast genome analysis of two Desmodesmus species reveals genome diversity within Scenedesmaceae (Sphaeropleales, Chlorophyceae)","authors":"Yan Xu ,&nbsp;Xiayi Chen ,&nbsp;Michael Melkonian ,&nbsp;Sibo Wang ,&nbsp;Sunil Kumar Sahu","doi":"10.1016/j.protis.2024.126073","DOIUrl":"10.1016/j.protis.2024.126073","url":null,"abstract":"<div><div><em>Desmodesmus</em> (Sphaeropleales, Chlorophyceae) is a genus of freshwater green algae widely distributed in aquatic ecosystems and known for its potential in biotechnology and bioremediation. We present the complete chloroplast genome sequences of two <em>Desmodesmus</em> species, <em>D. hystrix</em> and <em>D. perforatus</em>. Comparative analysis revealed significant differences in their quadripartite structures, particularly in the lengths of the small single copy regions. We observed variations in G + C content across genomic regions, with inverted repeat regions showing a higher G + C content. Microsatellite analysis revealed that A/T mononucleotides were the most abundant type, while dispersed repeat analysis suggested a potential link to expansion of the single-copy region in <em>D. perforatus</em>. Gene annotation, codon usage analysis, and comparison of genome rearrangement highlighted both similarities and differences between the species. Nucleotide diversity analysis revealed higher variability in intergenic regions than in coding regions, with IR regions displaying relative conservation. Comparative analyses of genomes and IR border arrangements demonstrated that the <em>Desmodesmus</em> species exhibit substantial differences in genome structure and gene arrangement among Scenedesmaceae. Phylogenetic analysis, based on 51 single-copy genes from 34 species of Sphaeropleales provided additional information about phylogenetic relationships within Sphaeropleales. These findings contribute to our understanding of comparative plastid genomics in green algae.</div></div>","PeriodicalId":20781,"journal":{"name":"Protist","volume":"175 6","pages":"Article 126073"},"PeriodicalIF":1.9,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142747697","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
New and noteworthy chrysophycean stomatocysts from the Steppe zone of South Urals (Russia) with comments on the morphological variability. 南乌拉尔(俄罗斯)草原带新发现的值得注意的chrysophysp口囊及其形态学变异。
IF 1.9 3区 生物学 Q4 MICROBIOLOGY Pub Date : 2024-11-28 DOI: 10.1016/j.protis.2024.126075
Marina Ignatenko, Tatyana Yatsenko-Stepanova, Dmitry Kapustin

Morphology of seven chrysophycean stomatocysts was studied using scanning electron microscopy. All stomatocysts were recorded from the shallow lakes located in the Steppe zone of South Urals. Four morphotypes (stomatocyst 373 Taylor et Smol, stomatocyst 68 Van de Vijver et Beyens, stomatocyst 99 Pang et Wang and stomatocyst 101 Pang et Wang Forma B) are rare and reported for the first time in Russia. New observations on the formation of the cyst ornamentation allowed us to amend the descriptions of two morphotypes. Three stomatocysts are described as new to science. Morphological variability of all seven morphotypes are illustrated and discussed.

用扫描电镜观察了7个菊花藻口囊的形态。所有口囊均来自南乌拉尔草原区浅水湖泊。四种形态(口囊373 Taylor et Smol,口囊68 Van de Vijver et Beyens,口囊99 Pang et Wang和口囊101 Pang et Wang Forma B)在俄罗斯罕见且首次报道。对囊肿纹饰形成的新观察使我们能够修正两种形态的描述。三种口囊肿被描述为科学上的新事物。所有七种形态型的形态变异都被说明和讨论。
{"title":"New and noteworthy chrysophycean stomatocysts from the Steppe zone of South Urals (Russia) with comments on the morphological variability.","authors":"Marina Ignatenko, Tatyana Yatsenko-Stepanova, Dmitry Kapustin","doi":"10.1016/j.protis.2024.126075","DOIUrl":"https://doi.org/10.1016/j.protis.2024.126075","url":null,"abstract":"<p><p>Morphology of seven chrysophycean stomatocysts was studied using scanning electron microscopy. All stomatocysts were recorded from the shallow lakes located in the Steppe zone of South Urals. Four morphotypes (stomatocyst 373 Taylor et Smol, stomatocyst 68 Van de Vijver et Beyens, stomatocyst 99 Pang et Wang and stomatocyst 101 Pang et Wang Forma B) are rare and reported for the first time in Russia. New observations on the formation of the cyst ornamentation allowed us to amend the descriptions of two morphotypes. Three stomatocysts are described as new to science. Morphological variability of all seven morphotypes are illustrated and discussed.</p>","PeriodicalId":20781,"journal":{"name":"Protist","volume":"176 ","pages":"126075"},"PeriodicalIF":1.9,"publicationDate":"2024-11-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142771610","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Protists and Society: A report on the 2024 autumn meeting of Protistology-UK, at the natural history museum, London 原生生物与社会:英国原生生物学2024年秋季会议报告,伦敦自然历史博物馆
IF 1.9 3区 生物学 Q4 MICROBIOLOGY Pub Date : 2024-11-27 DOI: 10.1016/j.protis.2024.126072
David J.S. Montagnes
{"title":"Protists and Society: A report on the 2024 autumn meeting of Protistology-UK, at the natural history museum, London","authors":"David J.S. Montagnes","doi":"10.1016/j.protis.2024.126072","DOIUrl":"10.1016/j.protis.2024.126072","url":null,"abstract":"","PeriodicalId":20781,"journal":{"name":"Protist","volume":"176 ","pages":"Article 126072"},"PeriodicalIF":1.9,"publicationDate":"2024-11-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142756628","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Integrative studies shed light on the pseudocryptic genus Crassohymena n. gen. (Protozoa, Ciliophora). 综合研究揭示了假隐属(原生动物,纤毛虫目)。
IF 1.9 3区 生物学 Q4 MICROBIOLOGY Pub Date : 2024-11-27 DOI: 10.1016/j.protis.2024.126074
Atef Omar, Jiwon Jung, Gaeul Lee, Jae-Ho Jung

The morphology, morphogenesis, molecular phylogeny, and the resting cyst morphology of the freshwater ciliate, Crassohymena primicirrata (Berger and Foissner, 1987) n. gen., n. comb., found in samples collected from South Korea, were investigated. The Korean two populations observed are identical to each other and are highly similar to the type population showing only few and minor differences in the size and arrangement of cortical granules and the length of dorsal kinety 4. The new genus Crassohymena n. gen. is established and characterized by a number of morphological and ontogenetic features: the thick undulating membranes comprising three or four rows of kinetosomes and in Cyrtohymena pattern; the anteriorly distinctly displaced transverse cirri; the posteriorly set-off cirrus V/3; the opisthe's anlagen IV-VI originate from cirri IV/2, V/4, and V/3, respectively; the proter's anlagen IV-VI originate from cirrus IV/3; and the enormous anlage I in each daughter cell. Phylogenetic analyses based on 18S rRNA gene sequences show that Crassohymena primicirrata n. gen., n. comb. is separated from all other morphologically most similar taxa and forms an adelphotaxon to the clade containing sequences of the families Neokeronopsidae and Spirofilidae, and the two oxytrichid genera Australocirrus and Notohymena.

淡水纤毛虫Crassohymena primicirrata的形态、形态发生、分子系统发育和静息囊形态(Berger and Foissner, 1987) n. gen. n. comb。从韩国采集的样本中发现的。观察到的朝鲜两个种群彼此完全相同,与型种群高度相似,在皮质颗粒的大小和排列以及背部运动的长度上只有很少和微小的差异4。新属(Crassohymena n. geng .)被建立,并具有许多形态学和个体发生特征:由三或四行动体组成的厚波状膜和细胞膜模式;前面明显移位的横卷;后抵消卷云V/3;蛇的胶原IV- vi分别来源于cirri IV/2、V/4和V/3;蛋白原IV- vi源自IV/3型卷病毒;以及每个子细胞中巨大的细胞I。基于18S rRNA基因序列的系统发育分析表明,原膜虫属(Crassohymena primicirrata n. gen., n. comb.);从所有其他形态上最相似的分类群中分离出来,形成了一个adelphotaxon,它的进化枝包含了Neokeronopsidae和Spirofilidae家族的序列,以及两个oxytrichid属australcirrus和Notohymena。
{"title":"Integrative studies shed light on the pseudocryptic genus Crassohymena n. gen. (Protozoa, Ciliophora).","authors":"Atef Omar, Jiwon Jung, Gaeul Lee, Jae-Ho Jung","doi":"10.1016/j.protis.2024.126074","DOIUrl":"https://doi.org/10.1016/j.protis.2024.126074","url":null,"abstract":"<p><p>The morphology, morphogenesis, molecular phylogeny, and the resting cyst morphology of the freshwater ciliate, Crassohymena primicirrata (Berger and Foissner, 1987) n. gen., n. comb., found in samples collected from South Korea, were investigated. The Korean two populations observed are identical to each other and are highly similar to the type population showing only few and minor differences in the size and arrangement of cortical granules and the length of dorsal kinety 4. The new genus Crassohymena n. gen. is established and characterized by a number of morphological and ontogenetic features: the thick undulating membranes comprising three or four rows of kinetosomes and in Cyrtohymena pattern; the anteriorly distinctly displaced transverse cirri; the posteriorly set-off cirrus V/3; the opisthe's anlagen IV-VI originate from cirri IV/2, V/4, and V/3, respectively; the proter's anlagen IV-VI originate from cirrus IV/3; and the enormous anlage I in each daughter cell. Phylogenetic analyses based on 18S rRNA gene sequences show that Crassohymena primicirrata n. gen., n. comb. is separated from all other morphologically most similar taxa and forms an adelphotaxon to the clade containing sequences of the families Neokeronopsidae and Spirofilidae, and the two oxytrichid genera Australocirrus and Notohymena.</p>","PeriodicalId":20781,"journal":{"name":"Protist","volume":"176 ","pages":"126074"},"PeriodicalIF":1.9,"publicationDate":"2024-11-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142780703","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Long-read DNA sequencing reveals the organization of the mitochondrial genome in the early-branching dinoflagellate Oxyrrhis marina. 长读DNA测序揭示了早期分支甲藻Oxyrrhis marina线粒体基因组的组织结构。
IF 1.9 3区 生物学 Q4 MICROBIOLOGY Pub Date : 2024-11-22 DOI: 10.1016/j.protis.2024.126071
Ronie Haro , Nikita Walunjkar , Soham Jorapur , Claudio H. Slamovits
The mitochondrial genomes of dinoflagellate protists are remarkable for their highly fragmented and heterogeneous organization. Early attempts to determine their structure without ‘next-generation’ DNA sequencing failed to recover a defined genome. Still, it coincided in showing that the proteins coding genes, three in total, and parts of the ribosomal RNA genes were spread across a diffuse assortment of small linear fragments. In contrast, a recent study employed Illumina sequencing to assemble a 326 kbp long single-molecule, circular mitochondrial genome in the symbiotic dinoflagellate Breviolum minutum. Here, we used a combination of short- and long-read massively-parallel DNA sequencing to analyze further the mitochondrial DNA of the early-branching dinoflagellate Oxyrrhis marina. We found that the mitochondrial genome of O. marina consists of 3 linear chromosomes sized 15.9, 33.8 and 40.6 kbp for a total of 90.3 kbp. It contains the cox1, cox3 and cob genes, the same three proteins encoded in the mitochondrion of all myzozoans (Apicomplexa and Dinophyceae), some fragments of ribosomal RNA genes as well as many non-functional gene fragments and extensive noncoding DNA. Our analysis unveiled segments syntenic patterns and rearrangements encompassing coding and non-coding regions, suggesting that recombination is a pervasive process driving the evolution of these genomes.
甲藻原生动物的线粒体基因组因其高度分散和异质的组织结构而引人注目。在没有进行 "下一代 "DNA 测序的情况下,确定其结构的早期尝试未能恢复一个确定的基因组。尽管如此,它还是不约而同地显示,蛋白质编码基因(共三个)和部分核糖体 RNA 基因分布在各种小的线性片段中。与此相反,最近的一项研究利用 Illumina 测序技术在共生甲藻 Breviolum minutum 中组装了一个 326 kbp 长的单分子环形线粒体基因组。在这里,我们结合使用了短线程和长线程大规模平行DNA测序技术,进一步分析了早枝甲藻(Oxyrrhis marina)的线粒体DNA。我们发现,O. marina 的线粒体基因组由 3 条线性染色体组成,大小分别为 15.9、33.8 和 40.6 kbp,总计 90.3 kbp。基因组中包含 cox1、cox3 和 cob 基因,这三种蛋白在所有无脊椎动物(拟尾柱虫纲和鼎足目)的线粒体中都有编码,还包含一些核糖体 RNA 基因片段以及许多无功能基因片段和大量非编码 DNA。我们的分析揭示了包括编码区和非编码区的片段同源模式和重排,表明重组是推动这些基因组进化的一个普遍过程。
{"title":"Long-read DNA sequencing reveals the organization of the mitochondrial genome in the early-branching dinoflagellate Oxyrrhis marina.","authors":"Ronie Haro ,&nbsp;Nikita Walunjkar ,&nbsp;Soham Jorapur ,&nbsp;Claudio H. Slamovits","doi":"10.1016/j.protis.2024.126071","DOIUrl":"10.1016/j.protis.2024.126071","url":null,"abstract":"<div><div>The mitochondrial genomes of dinoflagellate protists are remarkable for their highly fragmented and heterogeneous organization. Early attempts to determine their structure without ‘next-generation’ DNA sequencing failed to recover a defined genome. Still, it coincided in showing that the proteins coding genes, three in total, and parts of the ribosomal RNA genes were spread across a diffuse assortment of small linear fragments. In contrast, a recent study employed Illumina sequencing to assemble a 326 kbp long single-molecule, circular mitochondrial genome in the symbiotic dinoflagellate <em>Breviolum minutum</em>. Here, we used a combination of short- and long-read massively-parallel DNA sequencing to analyze further the mitochondrial DNA of the early-branching dinoflagellate <em>Oxyrrhis marina</em>. We found that the mitochondrial genome of <em>O. marina</em> consists of 3 linear chromosomes sized 15.9, 33.8 and 40.6 kbp for a total of 90.3 kbp. It contains the <em>cox</em>1, <em>cox</em>3 and <em>cob</em> genes, the same three proteins encoded in the mitochondrion of all myzozoans (Apicomplexa and Dinophyceae), some fragments of ribosomal RNA genes as well as many non-functional gene fragments and extensive noncoding DNA. Our analysis unveiled segments syntenic patterns and rearrangements encompassing coding and non-coding regions, suggesting that recombination is a pervasive process driving the evolution of these genomes.</div></div>","PeriodicalId":20781,"journal":{"name":"Protist","volume":"175 6","pages":"Article 126071"},"PeriodicalIF":1.9,"publicationDate":"2024-11-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142720748","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Flagellar proteomic analysis of the brown alga Mutimo cylindricus revealed a novel calcium-binding protein abundantly localized in the anterior flagellum 褐藻 Mutimo cylindricus 的鞭毛蛋白质组分析发现了一种新型钙结合蛋白,该蛋白大量定位于前鞭毛中
IF 1.9 3区 生物学 Q4 MICROBIOLOGY Pub Date : 2024-10-26 DOI: 10.1016/j.protis.2024.126070
Nana Kinoshita-Terauchi , Kogiku Shiba , Makoto Terauchi , Hideki Noguchi , Kazuo Inaba
Mutimo cylindricus gametes have two flagella with different structures : an anterior and a posterior flagellum. Their flagellar waveforms are regulated by calcium ions through various mechanisms, however the factors involved in this regulation remain largely unknown To elucidate the molecular basis underlying the difference between the two flagella, we performed a flagellar proteomic analysis of male M. cylindricus gametes. We identified 848 proteins shared with Ectocarpus siliculosus, including 28 calcium-binding proteins. Among the EF-hand proteins, a 111 kDa protein showed predominant localization along the anterior flagellum. Immunogold localization suggested that this protein is associated with outer doublet microtubules. This is the first report to show heterogeneous localization of a calcium-binding protein between two flagellar axonemes and suggests that calcium-binding proteins are involved in the specific regulation of the anterior flagellum.
圆柱木配子有两种不同结构的鞭毛:前鞭毛和后鞭毛。为了阐明两种鞭毛差异的分子基础,我们对雄性圆筒木配子进行了鞭毛蛋白质组分析。我们发现了848个与硅外皮藻共有的蛋白质,其中包括28个钙结合蛋白。在EF-手蛋白中,一个111 kDa的蛋白主要沿前鞭毛定位。免疫金定位表明,该蛋白与外双微管有关。这是首次报道钙结合蛋白在两个鞭毛轴丝之间的异质性定位,表明钙结合蛋白参与了前鞭毛的特异性调控。
{"title":"Flagellar proteomic analysis of the brown alga Mutimo cylindricus revealed a novel calcium-binding protein abundantly localized in the anterior flagellum","authors":"Nana Kinoshita-Terauchi ,&nbsp;Kogiku Shiba ,&nbsp;Makoto Terauchi ,&nbsp;Hideki Noguchi ,&nbsp;Kazuo Inaba","doi":"10.1016/j.protis.2024.126070","DOIUrl":"10.1016/j.protis.2024.126070","url":null,"abstract":"<div><div><em>Mutimo cylindricus</em> gametes have two flagella with different structures : an anterior and a posterior flagellum. Their flagellar waveforms are regulated by calcium ions through various mechanisms, however the factors involved in this regulation remain largely unknown To elucidate the molecular basis underlying the difference between the two flagella, we performed a flagellar proteomic analysis of male <em>M. cylindricus</em> gametes. We identified 848 proteins shared with <em>Ectocarpus siliculosus</em>, including 28 calcium-binding proteins. Among the EF-hand proteins, a 111 kDa protein showed predominant localization along the anterior flagellum. Immunogold localization suggested that this protein is associated with outer doublet microtubules. This is the first report to show heterogeneous localization of a calcium-binding protein between two flagellar axonemes and suggests that calcium-binding proteins are involved in the specific regulation of the anterior flagellum.</div></div>","PeriodicalId":20781,"journal":{"name":"Protist","volume":"175 6","pages":"Article 126070"},"PeriodicalIF":1.9,"publicationDate":"2024-10-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142578227","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Protist
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1