Pub Date : 2026-02-01DOI: 10.1016/j.rsma.2026.104794
Young-Ok Kim , Jungmin Choi , Noritoshi Suzuki , Intae Kim , Jimin Lee
Acantharia, a major group of microzooplankton inhabiting warm open-ocean waters, have not previously been studied in Korean coastal regions, despite these areas being frequently influenced by warm-water intrusions from the East China Sea and the Kuroshio Current. This study investigated the distribution of Acantharia in southern Korean coastal waters through a summer field survey and compared their local distribution with that observed at an open-ocean site in the Kuroshio region. At the coastal site, the highest acantharian abundance (33 cells L−1) observed in surface waters. Large acantharian cells, with endoplasm diameter exceeding 50 μm, were concentrated in the upper water layer, coinciding with abrupt increases in temperature and decreases in salinity. In contrast, smaller acantharian cells with endoplasm diameters below 20 μm were sparsely distributed throughout the water column at the open-ocean site. At both sites, peaks in acantharian abundance did not coincide vertically with layers of high chlorophyll concentration. Satellite-derived chlorophyll maps indicate that the dense occurrence of acantharian cells in the Korean coastal waters may be associated with an immigration-driven hotspot along the eastern boundary of the Changjiang diluted water plume. Further studies across the waters surrounding the Korea Peninsula are required to better understand the distribution patterns and ecological roles of Acantharia in this region.
{"title":"First report on the distribution of Acantharia (Radiolaria) in Korean coastal waters: Comparison with their distribution in the northwestern Pacific","authors":"Young-Ok Kim , Jungmin Choi , Noritoshi Suzuki , Intae Kim , Jimin Lee","doi":"10.1016/j.rsma.2026.104794","DOIUrl":"10.1016/j.rsma.2026.104794","url":null,"abstract":"<div><div>Acantharia, a major group of microzooplankton inhabiting warm open-ocean waters, have not previously been studied in Korean coastal regions, despite these areas being frequently influenced by warm-water intrusions from the East China Sea and the Kuroshio Current. This study investigated the distribution of Acantharia in southern Korean coastal waters through a summer field survey and compared their local distribution with that observed at an open-ocean site in the Kuroshio region. At the coastal site, the highest acantharian abundance (33 cells L<sup>−1</sup>) observed in surface waters. Large acantharian cells, with endoplasm diameter exceeding 50 μm, were concentrated in the upper water layer, coinciding with abrupt increases in temperature and decreases in salinity. In contrast, smaller acantharian cells with endoplasm diameters below 20 μm were sparsely distributed throughout the water column at the open-ocean site. At both sites, peaks in acantharian abundance did not coincide vertically with layers of high chlorophyll concentration. Satellite-derived chlorophyll maps indicate that the dense occurrence of acantharian cells in the Korean coastal waters may be associated with an immigration-driven hotspot along the eastern boundary of the Changjiang diluted water plume. Further studies across the waters surrounding the Korea Peninsula are required to better understand the distribution patterns and ecological roles of Acantharia in this region.</div></div>","PeriodicalId":21070,"journal":{"name":"Regional Studies in Marine Science","volume":"94 ","pages":"Article 104794"},"PeriodicalIF":2.4,"publicationDate":"2026-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146078832","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-01DOI: 10.1016/j.rsma.2026.104802
Luciana Ribeiro Martins , Yara Aparecida Garcia Tavares , Yara Nantes Vasconcelos , Francisco José Reyes Sánchez , Pablo Damian Borges Guilherme , Guilherme Rupp , Camilla Souto
The global exploitation of sea cucumbers spans roughly 90 countries and involves 84 species. Here, we provide a historical overview and current assessment of Brazil’s illegal sea cucumber trade by integrating lexicometric analysis with media reports, unpublished field observations, and specimens seized by the national compliance authorities. We also review literature with population-level data for two key species—Holothuria (Halodeima) grisea and Isostichopus badionotus—and evaluate the role of Brazilian legislation and taxonomic resolution in their conservation. Sea cucumber fisheries in Brazil were first documented in the early 20th century, with the first illegal apprehension recorded in the early 2000s. Holothuria (Halodeima) grisea and I. badionotus have been harvested without regulation throughout the coast. While the biology of H. (Halodeima) grisea is relatively well known in southern Brazil, local knowledge of this species in northern Brazil, as well as that of I. badionotus, is scarce, hindering effective management. Both local and foreign harvesters process specimens on-site before export, primarily to Hong Kong, with some shipments to Europe. Nearly 40 % of confiscated individuals were juveniles, indicating both reduced market value and intense harvesting pressure. Although the full extent of exploitation remains unclear, overharvesting has already driven stock declines in Ceará State. The combination of limited research capacity and regulatory gaps makes both the conservation and sustainable use of Brazilian sea cucumbers especially challenging, underscoring the urgent need for baseline biological data and the development of effective management strategies.
{"title":"Brazil’s role in the illegal sea cucumber trade: A synthesis of historical accounts, literature, reports, and seizure records","authors":"Luciana Ribeiro Martins , Yara Aparecida Garcia Tavares , Yara Nantes Vasconcelos , Francisco José Reyes Sánchez , Pablo Damian Borges Guilherme , Guilherme Rupp , Camilla Souto","doi":"10.1016/j.rsma.2026.104802","DOIUrl":"10.1016/j.rsma.2026.104802","url":null,"abstract":"<div><div>The global exploitation of sea cucumbers spans roughly 90 countries and involves 84 species. Here, we provide a historical overview and current assessment of Brazil’s illegal sea cucumber trade by integrating lexicometric analysis with media reports, unpublished field observations, and specimens seized by the national compliance authorities. We also review literature with population-level data for two key species—<em>Holothuria</em> (<em>Halodeima</em>) <em>grisea</em> and <em>Isostichopus badionotus</em>—and evaluate the role of Brazilian legislation and taxonomic resolution in their conservation. Sea cucumber fisheries in Brazil were first documented in the early 20th century, with the first illegal apprehension recorded in the early 2000s. <em>Holothuria</em> (<em>Halodeima</em>) <em>grisea</em> and <em>I. badionotus</em> have been harvested without regulation throughout the coast. While the biology of <em>H</em>. (<em>Halodeima</em>) <em>grisea</em> is relatively well known in southern Brazil, local knowledge of this species in northern Brazil, as well as that of <em>I. badionotus</em>, is scarce, hindering effective management. Both local and foreign harvesters process specimens on-site before export, primarily to Hong Kong, with some shipments to Europe. Nearly 40 % of confiscated individuals were juveniles, indicating both reduced market value and intense harvesting pressure. Although the full extent of exploitation remains unclear, overharvesting has already driven stock declines in Ceará State. The combination of limited research capacity and regulatory gaps makes both the conservation and sustainable use of Brazilian sea cucumbers especially challenging, underscoring the urgent need for baseline biological data and the development of effective management strategies.</div></div>","PeriodicalId":21070,"journal":{"name":"Regional Studies in Marine Science","volume":"94 ","pages":"Article 104802"},"PeriodicalIF":2.4,"publicationDate":"2026-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146079416","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-01DOI: 10.1016/j.rsma.2026.104758
Qunyu Chen , Dale Stain
Marine pollution threatens food security and ecological integrity in China’s coastal and near-shore regions(CCNR), yet quantitative evidence linking pollutant pathways to health outcomes remains limited. This study presents original empirical analysis of marine pollution impacts across major Chinese coastal provinces (Shandong, Jiangsu, Zhejiang, Fujian, Guangdong, and Hainan) using a One Health framework. We conducted systematic data collection between 2022 and 2024, including: (i) seafood contaminant measurements (n = 847 samples; heavy metals via ICP-MS, microplastics via FTIR spectroscopy) from artisanal fishing sites and aquaculture facilities; (ii) 312 structured household surveys measuring food security indicators; (iii) spatial analysis of pollution entry points using satellite imagery and port authority records; and (iv) comparative policy assessment across all six nations using semi-structured interviews with 48 government officials and environmental managers.Results demonstrate that microplastics (detected in 73 % of samples, mean 4.2 particles/g) and heavy metals (lead: 0.34 mg/kg; mercury: 0.18 mg/kg; both exceeding WHO limits in hotspot areas) constitute primary contamination vectors, with significant inter-island variation (p < 0.001). Port proximity emerged as the strongest predictor of contamination (OR=3.8, 95 % CI: 2.1–6.9), followed by inadequate wastewater infrastructure (OR=2.4). Food-borne disease incidence correlates positively with contamination levels (r = 0.67, p < 0.01), with aquaculture and artisanal fisheries jointly explaining 64 % of community-level exposure variance. Integrated multi-trophic aquaculture (IMTA) systems achieved 45–67 % nutrient load reductions while maintaining 89 % of baseline yields. Gear-marking initiatives reduced abandoned fishing gear by 52 % across pilot sites. Veterinary-monitored AMR surveillance in aquaculture reduced antibiotic resistance prevalence by 38 % over 18 months.Cost-effectiveness analysis reveals that bundled interventions—combining wastewater upgrades (USD 2.3 M per island), IMTA conversion pilots (USD 450 K), gear-marking programs (USD 120 K), and AMR surveillance systems (USD 85 K annually)—offer economically viable pathways to simultaneously improve food safety, protect coastal ecosystems, and enhance community resilience in China's coastel and near-shore regions contexts.
{"title":"Safeguarding coastal health: Marine pollution as a catalyst of food insecurity and ecological risk in Island nations","authors":"Qunyu Chen , Dale Stain","doi":"10.1016/j.rsma.2026.104758","DOIUrl":"10.1016/j.rsma.2026.104758","url":null,"abstract":"<div><div>Marine pollution threatens food security and ecological integrity in China’s coastal and near-shore regions(CCNR), yet quantitative evidence linking pollutant pathways to health outcomes remains limited. This study presents original empirical analysis of marine pollution impacts across major Chinese coastal provinces (Shandong, Jiangsu, Zhejiang, Fujian, Guangdong, and Hainan) using a One Health framework. We conducted systematic data collection between 2022 and 2024, including: (i) seafood contaminant measurements (n = 847 samples; heavy metals via ICP-MS, microplastics via FTIR spectroscopy) from artisanal fishing sites and aquaculture facilities; (ii) 312 structured household surveys measuring food security indicators; (iii) spatial analysis of pollution entry points using satellite imagery and port authority records; and (iv) comparative policy assessment across all six nations using semi-structured interviews with 48 government officials and environmental managers.Results demonstrate that microplastics (detected in 73 % of samples, mean 4.2 particles/g) and heavy metals (lead: 0.34 mg/kg; mercury: 0.18 mg/kg; both exceeding WHO limits in hotspot areas) constitute primary contamination vectors, with significant inter-island variation (p < 0.001). Port proximity emerged as the strongest predictor of contamination (OR=3.8, 95 % CI: 2.1–6.9), followed by inadequate wastewater infrastructure (OR=2.4). Food-borne disease incidence correlates positively with contamination levels (r = 0.67, p < 0.01), with aquaculture and artisanal fisheries jointly explaining 64 % of community-level exposure variance. Integrated multi-trophic aquaculture (IMTA) systems achieved 45–67 % nutrient load reductions while maintaining 89 % of baseline yields. Gear-marking initiatives reduced abandoned fishing gear by 52 % across pilot sites. Veterinary-monitored AMR surveillance in aquaculture reduced antibiotic resistance prevalence by 38 % over 18 months.Cost-effectiveness analysis reveals that bundled interventions—combining wastewater upgrades (USD 2.3 M per island), IMTA conversion pilots (USD 450 K), gear-marking programs (USD 120 K), and AMR surveillance systems (USD 85 K annually)—offer economically viable pathways to simultaneously improve food safety, protect coastal ecosystems, and enhance community resilience in China's coastel and near-shore regions contexts.</div></div>","PeriodicalId":21070,"journal":{"name":"Regional Studies in Marine Science","volume":"94 ","pages":"Article 104758"},"PeriodicalIF":2.4,"publicationDate":"2026-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146078834","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-01DOI: 10.1016/j.rsma.2026.104811
P. Thamarai, A. Saravanan, P.R. Yaashikaa
The rapid expansion of global industrialization and population growth has intensified water contamination, making it essential to explore sustainable remediation strategies. Among various natural biosorbents, seaweeds have emerged as promising candidates for pollutant removal due to their unique biochemical composition and high biosorption efficiency. Naturally occurring seaweeds play an essential role in maintaining ecological balance by passively accumulating heavy metals and organic pollutants, whereas cultivated seaweeds can be optimized for targeted clean water restoration and wastewater treatment applications. Their abundant availability, eco-friendliness, and cost-effectiveness further enhance their applicability in large-scale water treatment. This review examines the occurrence of major toxic pollutants in water bodies and their environmental consequences while critically evaluating the potential of seaweed-based bioremediation. The specific mechanisms of removal include ion exchange and complexation with carboxyl, hydroxyl, and sulfate groups for heavy metals; electrostatic attraction and π–π interactions for synthetic dyes; hydrogen bonding and hydrophobic interactions for phenolic compounds; and adsorption through van der Waals forces and surface complexation for pharmaceutical residues. Additionally, factors influencing biosorption efficiency, including biosorbent dosage, initial pollutant concentration, pH, and temperature, are analyzed. Findings from this study indicate that seaweed biomass demonstrates significant adsorption capacities across pollutant classes, with desorption and regeneration studies confirming its reusability. However, challenges such as large-scale implementation, regeneration efficiency, and cost-effectiveness remain critical hurdles. The review highlights the necessity for interdisciplinary approaches to optimize seaweed-based remediation, including process modifications, composite development, and hybrid treatment systems. Overall, seaweed-based remediation represents a sustainable and practical solution for mitigating water pollution and advancing eco-friendly wastewater treatment.
{"title":"Exploring the role of seaweeds in environmental pollution mitigation for clean water: Mechanisms of adsorption and desorption","authors":"P. Thamarai, A. Saravanan, P.R. Yaashikaa","doi":"10.1016/j.rsma.2026.104811","DOIUrl":"10.1016/j.rsma.2026.104811","url":null,"abstract":"<div><div>The rapid expansion of global industrialization and population growth has intensified water contamination, making it essential to explore sustainable remediation strategies. Among various natural biosorbents, seaweeds have emerged as promising candidates for pollutant removal due to their unique biochemical composition and high biosorption efficiency. Naturally occurring seaweeds play an essential role in maintaining ecological balance by passively accumulating heavy metals and organic pollutants, whereas cultivated seaweeds can be optimized for targeted clean water restoration and wastewater treatment applications. Their abundant availability, eco-friendliness, and cost-effectiveness further enhance their applicability in large-scale water treatment. This review examines the occurrence of major toxic pollutants in water bodies and their environmental consequences while critically evaluating the potential of seaweed-based bioremediation. The specific mechanisms of removal include ion exchange and complexation with carboxyl, hydroxyl, and sulfate groups for heavy metals; electrostatic attraction and π–π interactions for synthetic dyes; hydrogen bonding and hydrophobic interactions for phenolic compounds; and adsorption through van der Waals forces and surface complexation for pharmaceutical residues. Additionally, factors influencing biosorption efficiency, including biosorbent dosage, initial pollutant concentration, pH, and temperature, are analyzed. Findings from this study indicate that seaweed biomass demonstrates significant adsorption capacities across pollutant classes, with desorption and regeneration studies confirming its reusability. However, challenges such as large-scale implementation, regeneration efficiency, and cost-effectiveness remain critical hurdles. The review highlights the necessity for interdisciplinary approaches to optimize seaweed-based remediation, including process modifications, composite development, and hybrid treatment systems. Overall, seaweed-based remediation represents a sustainable and practical solution for mitigating water pollution and advancing eco-friendly wastewater treatment.</div></div>","PeriodicalId":21070,"journal":{"name":"Regional Studies in Marine Science","volume":"94 ","pages":"Article 104811"},"PeriodicalIF":2.4,"publicationDate":"2026-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146078847","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The mangrove ecosystem in Indonesia has experienced substantial degradation over the past two decades. Development of agricultural land, fish ponds for aquaculture, settlements, and illegal deforestation are examples of anthropogenic-driven factors that can damage mangrove ecosystems. The advancement of cloud computing-based platforms that support high-performance geospatial data processing is very useful to the study of environmental changes, particularly in mangrove areas. This study focuses on measuring long-term spatio-temporal changes in four mangrove ecosystem hotspots in East Java, namely the mangrove forest of Ujung Pangkah, the Surabaya East Coast, Alas Purwo National Park, and Pang Pang Bay. This study aims to determine the dynamics of multi-temporal mangrove area coverage in East Java Province and to investigate the driving factors causing changes in mangrove forest areas in those locations. Using multi-temporal Landsat imagery data from 1995 to 2022 and processed in Google Earth Engine (GEE), the study employed supervised classification using the Random Forest algorithm to mapping mangrove areas and analyze their changes. Field data were collected to validate remote sensing results and assess mangrove species composition and structural diversity. This study reveals an increase of approximately 2837.17 ha in the total mangrove forest area across four main sites in East Java, based on nearly three decades of Landsat satellite images analysis. Moreover, the overall accuracy (OA) of mangrove classification in this study reached > 80 % with a Kappa coefficient > 0.75.The most significant increase in mangrove forest area occurred in Ujung Pangkah with an increase of more than 1600 ha. The increased mangrove forest area was also accompanied by an increase in vegetation density. This trend is indicated by the average NDVI increasing from approximately 0.32–0.63 at the end of the observation period. The combination of sedimentation, conservation status, and the role of local communities in mangrove rehabilitation programs are the main driving factors that determine the improvement of mangrove forest conditions in East Java.
{"title":"Assessment of community structure and spatio-temporal dynamic of mangrove vegetation in East Java Province, Indonesia using multi-decadal satellite remote sensing","authors":"Zainul Hidayah , Herlambang Aulia Rachman , Abd Rahman As-Syakur , Dwi Budi Wiyanto","doi":"10.1016/j.rsma.2026.104788","DOIUrl":"10.1016/j.rsma.2026.104788","url":null,"abstract":"<div><div>The mangrove ecosystem in Indonesia has experienced substantial degradation over the past two decades. Development of agricultural land, fish ponds for aquaculture, settlements, and illegal deforestation are examples of anthropogenic-driven factors that can damage mangrove ecosystems. The advancement of cloud computing-based platforms that support high-performance geospatial data processing is very useful to the study of environmental changes, particularly in mangrove areas. This study focuses on measuring long-term spatio-temporal changes in four mangrove ecosystem hotspots in East Java, namely the mangrove forest of Ujung Pangkah, the Surabaya East Coast, Alas Purwo National Park, and Pang Pang Bay. This study aims to determine the dynamics of multi-temporal mangrove area coverage in East Java Province and to investigate the driving factors causing changes in mangrove forest areas in those locations. Using multi-temporal Landsat imagery data from 1995 to 2022 and processed in Google Earth Engine (GEE), the study employed supervised classification using the Random Forest algorithm to mapping mangrove areas and analyze their changes. Field data were collected to validate remote sensing results and assess mangrove species composition and structural diversity. This study reveals an increase of approximately 2837.17 ha in the total mangrove forest area across four main sites in East Java, based on nearly three decades of Landsat satellite images analysis. Moreover, the overall accuracy (OA) of mangrove classification in this study reached > 80 % with a Kappa coefficient > 0.75.The most significant increase in mangrove forest area occurred in Ujung Pangkah with an increase of more than 1600 ha. The increased mangrove forest area was also accompanied by an increase in vegetation density. This trend is indicated by the average NDVI increasing from approximately 0.32–0.63 at the end of the observation period. The combination of sedimentation, conservation status, and the role of local communities in mangrove rehabilitation programs are the main driving factors that determine the improvement of mangrove forest conditions in East Java.</div></div>","PeriodicalId":21070,"journal":{"name":"Regional Studies in Marine Science","volume":"94 ","pages":"Article 104788"},"PeriodicalIF":2.4,"publicationDate":"2026-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146078837","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Anticipating the final destination of sediments and other water-borne particles is a crucial aspect of coastal engineering and dredged material management. Pollutant movement, sensitive habitats, endangered species, rehabilitation, and beneficial use activities can all be evaluated with the use of these forecasts when dredging and placement projects are underway. To study a prospective candidate site for the near shore deployment of dredged material, the Particle Tracking Model (PTM), a Lagrangian particle tracker, simulates the movement of different sediment types in a flow field related to the output of Coastal Modelling System (CMS). Many coastal and river applications employ the (PTM) model to estimate the eventual position of debris discharged during dredging and placement activities. The principal application of the PTM model in this study is to estimate the movement and deposition of sediments in the Kitchener Drain Estuary. Although this study primarily investigates general sediment transport, the model’s capability extends to analysing contaminated sediment deposits, which is crucial for future dredging and restoration projects. In order to evaluate existing and prospective dredging methods, the (PTM) integrates powerful visualisation tools with precise and efficient transportation computations. The coupled hydrodynamic numerical model CMS-PTM is integrated into the Surface-water Modelling System (SMS) Version 11.1, and it uses algorithms that accurately represent the transportation, sedimentation, mixing, and suspension processes in near shore wave conditions.
{"title":"Integrated CMS-PTM modelling of tidally and wave-driven hydrodynamics and particle transport at the kitchener drain estuary, Egypt","authors":"Nada Mansour , Tharwat Sarhan , Mahmoud El-Gamal , Karim Nassar","doi":"10.1016/j.rsma.2026.104807","DOIUrl":"10.1016/j.rsma.2026.104807","url":null,"abstract":"<div><div>Anticipating the final destination of sediments and other water-borne particles is a crucial aspect of coastal engineering and dredged material management. Pollutant movement, sensitive habitats, endangered species, rehabilitation, and beneficial use activities can all be evaluated with the use of these forecasts when dredging and placement projects are underway. To study a prospective candidate site for the near shore deployment of dredged material, the Particle Tracking Model (PTM), a Lagrangian particle tracker, simulates the movement of different sediment types in a flow field related to the output of Coastal Modelling System (CMS). Many coastal and river applications employ the (PTM) model to estimate the eventual position of debris discharged during dredging and placement activities. The principal application of the PTM model in this study is to estimate the movement and deposition of sediments in the Kitchener Drain Estuary. Although this study primarily investigates general sediment transport, the model’s capability extends to analysing contaminated sediment deposits, which is crucial for future dredging and restoration projects. In order to evaluate existing and prospective dredging methods, the (PTM) integrates powerful visualisation tools with precise and efficient transportation computations. The coupled hydrodynamic numerical model CMS-PTM is integrated into the Surface-water Modelling System (SMS) Version 11.1, and it uses algorithms that accurately represent the transportation, sedimentation, mixing, and suspension processes in near shore wave conditions.</div></div>","PeriodicalId":21070,"journal":{"name":"Regional Studies in Marine Science","volume":"94 ","pages":"Article 104807"},"PeriodicalIF":2.4,"publicationDate":"2026-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146078833","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-01DOI: 10.1016/j.rsma.2026.104795
Shilpa Sunny, Amit Kumar, S. Prakash
Metagenomic analysis of deep-sea sediments from the Bay of Bengal reveals largely unexplored microbial diversity and their functional capabilities, particularly in plastic degradation. Illumina-based shotgun metagenome sequencing of sediment collected at 1750 m in Krishna Godavari basin in the Bay of Bengal identified Bacillota as the predominant phylum, followed by Pseudomonadota, Actinomycetota, Myxococcota. We further identified 3 metagenome assisted genomes as Mesobacillus subterraneus, Cytobacillus oceanisediminis, and Fictibacillus arsenicus. A Search against the PlasticDB database identified 29 types of plastic degrading enzymes, linked to 27 different plastic polymers, including 14 natural and 13 synthetic polymers. The highest number of plastic degrading enzymes - associated hits were involved in the degradation of polyacetic acid, followed by polyhydroxyalkanoates, polyethylene glycol, and others. Functional annotation of the complete metagenome assembly revealed 6 classes of antibiotic drugs and 61 Biosynthetic Gene Clusters alongside metabolic pathways essential for biodegradation, and biogeochemical cycles including carbon, sulfur and nitrogen cycle. This study underscores that Bay of Bengal deep sea sediments as a highly dynamic environmental niche for further exploration.
{"title":"Metagenomic exploration of microbial diversity and their plastic degradation potential in deep sea sediments of Bay of Bengal","authors":"Shilpa Sunny, Amit Kumar, S. Prakash","doi":"10.1016/j.rsma.2026.104795","DOIUrl":"10.1016/j.rsma.2026.104795","url":null,"abstract":"<div><div>Metagenomic analysis of deep-sea sediments from the Bay of Bengal reveals largely unexplored microbial diversity and their functional capabilities, particularly in plastic degradation. Illumina-based shotgun metagenome sequencing of sediment collected at 1750 m in Krishna Godavari basin in the Bay of Bengal identified Bacillota as the predominant phylum, followed by Pseudomonadota, Actinomycetota, Myxococcota. We further identified 3 metagenome assisted genomes as <em>Mesobacillus subterraneus, Cytobacillus oceanisediminis</em>, and <em>Fictibacillus arsenicus.</em> A Search against the PlasticDB database identified 29 types of plastic degrading enzymes, linked to 27 different plastic polymers, including 14 natural and 13 synthetic polymers. The highest number of plastic degrading enzymes - associated hits were involved in the degradation of polyacetic acid, followed by polyhydroxyalkanoates, polyethylene glycol, and others. Functional annotation of the complete metagenome assembly revealed 6 classes of antibiotic drugs and 61 Biosynthetic Gene Clusters alongside metabolic pathways essential for biodegradation, and biogeochemical cycles including carbon, sulfur and nitrogen cycle. This study underscores that Bay of Bengal deep sea sediments as a highly dynamic environmental niche for further exploration.</div></div>","PeriodicalId":21070,"journal":{"name":"Regional Studies in Marine Science","volume":"94 ","pages":"Article 104795"},"PeriodicalIF":2.4,"publicationDate":"2026-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146078835","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-28DOI: 10.1016/j.rsma.2026.104819
Haibin Sun , Yuanren Liang , Qingwei Bu , Lei Yang , Jianfeng Tang , Yaoyang Xu
In aquatic ecosystems, tri-organophosphate esters and their di-metabolites are commonly found and may present significant ecological risks. Nonetheless, there is still a scarcity of data regarding the contamination characteristics and how OPEs and their metabolites partition at the interface between sediment and water. This research aimed to examine the spatial variation, interface exchange, and diffusion processes of 13 tri-OPEs and 5 di-OPEs within the surface water and sediment of the Yong River, which is situated in heavily urbanized regions of eastern China. The concentration levels of tri-OPEs in the aquatic environment ranged from 428.84 to 4024.01 ng/L, whereas concentrations of di-OPEs spanned from 92.6 to 440.39 ng/L. The most prevalent category of contaminants identified were Chlorinated OPEs. In the sediment, the concentration levels varied from 0.16 to 2400.5 ng/g (dw), with tributyl phosphate (TnBP) being the primary constituent. Fugacity fraction analysis indicates that most OPEs, including TMP, TEP, and TCEP, are likely to migrate into the water phase. Others, such as TiBP, TBEP, TCIPP, and TPHP, tend to maintain equilibrium at the sediment-water interface. The composition of the compound in terms of carbon atom count and the level of soot carbon present in the sediment significantly influence the dispersal patterns of OPEs. The analysis of potential sources revealed that the main contributors to tri-OPEs stemmed from discharges linked to wastewater treatment facilities and various industrial processes. Conversely, di-OPEs emerged primarily from industrial manufacturing and the breakdown of tri-OPEs. The analysis of ecological risks across multiple levels indicated that tris(1,3-dichloro-2-propyl) phosphate (TDCP) represents a minimal threat to aquatic ecosystems. These results can provide insights into the dynamics of OPE and their metabolites within urban river water ecosystems that experience significant human influence.
{"title":"Organophosphate triesters and diesters in surface waters and sediments of an urbanized river in Eastern China: Spatial patterns and ecological implications","authors":"Haibin Sun , Yuanren Liang , Qingwei Bu , Lei Yang , Jianfeng Tang , Yaoyang Xu","doi":"10.1016/j.rsma.2026.104819","DOIUrl":"10.1016/j.rsma.2026.104819","url":null,"abstract":"<div><div>In aquatic ecosystems, tri-organophosphate esters and their di-metabolites are commonly found and may present significant ecological risks. Nonetheless, there is still a scarcity of data regarding the contamination characteristics and how OPEs and their metabolites partition at the interface between sediment and water. This research aimed to examine the spatial variation, interface exchange, and diffusion processes of 13 tri-OPEs and 5 di-OPEs within the surface water and sediment of the Yong River, which is situated in heavily urbanized regions of eastern China. The concentration levels of tri-OPEs in the aquatic environment ranged from 428.84 to 4024.01 ng/L, whereas concentrations of di-OPEs spanned from 92.6 to 440.39 ng/L. The most prevalent category of contaminants identified were Chlorinated OPEs. In the sediment, the concentration levels varied from 0.16 to 2400.5 ng/g (dw), with tributyl phosphate (TnBP) being the primary constituent. Fugacity fraction analysis indicates that most OPEs, including TMP, TEP, and TCEP, are likely to migrate into the water phase. Others, such as TiBP, TBEP, TCIPP, and TPHP, tend to maintain equilibrium at the sediment-water interface. The composition of the compound in terms of carbon atom count and the level of soot carbon present in the sediment significantly influence the dispersal patterns of OPEs. The analysis of potential sources revealed that the main contributors to tri-OPEs stemmed from discharges linked to wastewater treatment facilities and various industrial processes. Conversely, di-OPEs emerged primarily from industrial manufacturing and the breakdown of tri-OPEs. The analysis of ecological risks across multiple levels indicated that tris(1,3-dichloro-2-propyl) phosphate (TDCP) represents a minimal threat to aquatic ecosystems. These results can provide insights into the dynamics of OPE and their metabolites within urban river water ecosystems that experience significant human influence.</div></div>","PeriodicalId":21070,"journal":{"name":"Regional Studies in Marine Science","volume":"95 ","pages":"Article 104819"},"PeriodicalIF":2.4,"publicationDate":"2026-01-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146057419","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-28DOI: 10.1016/j.rsma.2026.104817
Nicole B. Rowberry , Arthur D. Barraza , Colin J. Limpus , Jason P. van de Merwe , Kimberly A. Finlayson
Green sea turtles (Chelonia mydas) have high ecological, economic and cultural importance, and their high fidelity to foraging grounds and long lifespan make them good bioindicators of trace element pollution. Trace elements accumulate in green turtles through food, and are linked with disease and abnormalities. Previous studies suggest higher concentrations of trace elements within inshore locations, closer to anthropogenic activities and coastal run-off, compared to remote offshore sites. This project investigated trace element accumulation in blood of green turtles foraging in locations of differing chemical input. Blood was collected from green turtles foraging at three sites: Port Curtis (adjacent to industrial port), Heron Reef (adjacent to tourist resort and research station), and Hoskyn/Fairfax reefs (remote offshore reefs). The blood was acid digested and analysed using ICP-MS for trace element concentrations. Concentrations of individual elements were statistically analysed for differences between locations, and a principal components analysis was used to assess multivariate differences between locations. Trace element concentrations were also compared to reference intervals (RIs) from the literature. Antimony, cobalt, manganese, and molybdenum concentrations were significantly higher in Port Curtis turtles, and elevated above the reference intervals. Arsenic, selenium and cadmium were significantly higher in both offshore locations compared to Port Curtis, and elevated above reference intervals. Vanadium was significantly higher in Hoskyn/Fairfax turtles, and elevated above reference intervals. Principal component analyses found a distinct separation between Port Curtis and the Capricorn Bunker, as well as some separation between Heron and Hoskyn/Fairfax reefs. The higher concentrations of elements in turtle blood compared to the reference intervals, and other global populations, demonstrates natural and anthropogenic sources of elements are accumulating in these green turtles at elevated levels, with suspected risk to their health and the health of the marine environment.
{"title":"Trace element accumulation in green turtles (Chelonia mydas) foraging in locations of differing chemical input","authors":"Nicole B. Rowberry , Arthur D. Barraza , Colin J. Limpus , Jason P. van de Merwe , Kimberly A. Finlayson","doi":"10.1016/j.rsma.2026.104817","DOIUrl":"10.1016/j.rsma.2026.104817","url":null,"abstract":"<div><div>Green sea turtles (<em>Chelonia mydas</em>) have high ecological, economic and cultural importance, and their high fidelity to foraging grounds and long lifespan make them good bioindicators of trace element pollution. Trace elements accumulate in green turtles through food, and are linked with disease and abnormalities. Previous studies suggest higher concentrations of trace elements within inshore locations, closer to anthropogenic activities and coastal run-off, compared to remote offshore sites. This project investigated trace element accumulation in blood of green turtles foraging in locations of differing chemical input. Blood was collected from green turtles foraging at three sites: Port Curtis (adjacent to industrial port), Heron Reef (adjacent to tourist resort and research station), and Hoskyn/Fairfax reefs (remote offshore reefs). The blood was acid digested and analysed using ICP-MS for trace element concentrations. Concentrations of individual elements were statistically analysed for differences between locations, and a principal components analysis was used to assess multivariate differences between locations. Trace element concentrations were also compared to reference intervals (RIs) from the literature. Antimony, cobalt, manganese, and molybdenum concentrations were significantly higher in Port Curtis turtles, and elevated above the reference intervals. Arsenic, selenium and cadmium were significantly higher in both offshore locations compared to Port Curtis, and elevated above reference intervals. Vanadium was significantly higher in Hoskyn/Fairfax turtles, and elevated above reference intervals. Principal component analyses found a distinct separation between Port Curtis and the Capricorn Bunker, as well as some separation between Heron and Hoskyn/Fairfax reefs. The higher concentrations of elements in turtle blood compared to the reference intervals, and other global populations, demonstrates natural and anthropogenic sources of elements are accumulating in these green turtles at elevated levels, with suspected risk to their health and the health of the marine environment.</div></div>","PeriodicalId":21070,"journal":{"name":"Regional Studies in Marine Science","volume":"95 ","pages":"Article 104817"},"PeriodicalIF":2.4,"publicationDate":"2026-01-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146090359","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The amino acid profile of Plesionika edwardsii in relation to its astaxanthin content, was examined in shrimp captured from traps at varying depths (210, 350, 450, and 500 m), with an attempt to establish a correlation between the two factors. The effect of the presence of the egg has also been evaluated. Total essential amino acid (EAA) content increased with depth, regardless of egg presence, while total non-EAA content was positively influenced by both depth and egg presence. Lysine, arginine, and leucine were identified as the predominant EAAs, while glutamic acid and aspartic acid were the major non-EAAs at all depths. Notably, shrimp caught at 210 m with eggs exhibited lower amino acid content compared to those from deeper depths, particularly 450 and 500 m. The lightness and redness of shrimps decrease with increasing depth, while b* value remained consistent across all conditions. A clear trend of decreasing astaxanthin values was observed, with some statistically significant differences suggesting a possible effect of depth. There is more concentrated astaxanthin in shrimp caught at shallower depths and decreases as the depth increases. A significant negative correlation was observed between astaxanthin content and most amino acids, particularly methionine, valine, and alanine, with this trend more pronounced in shrimp with eggs. These findings indicate that astaxanthin and amino acids could experience functional variations depending on environmental conditions.
{"title":"Depth-dependent biochemical changes in Plesionika edwardsii: Inverse correlation between amino acids and astaxanthin","authors":"Hanife Aydan Yatmaz , Turhan Kebapcioglu , Pinar Yerlikaya","doi":"10.1016/j.rsma.2026.104818","DOIUrl":"10.1016/j.rsma.2026.104818","url":null,"abstract":"<div><div>The amino acid profile of <em>Plesionika edwardsii</em> in relation to its astaxanthin content, was examined in shrimp captured from traps at varying depths (210, 350, 450, and 500 m), with an attempt to establish a correlation between the two factors. The effect of the presence of the egg has also been evaluated. Total essential amino acid (EAA) content increased with depth, regardless of egg presence, while total non-EAA content was positively influenced by both depth and egg presence. Lysine, arginine, and leucine were identified as the predominant EAAs, while glutamic acid and aspartic acid were the major non-EAAs at all depths. Notably, shrimp caught at 210 m with eggs exhibited lower amino acid content compared to those from deeper depths, particularly 450 and 500 m. The lightness and redness of shrimps decrease with increasing depth, while b* value remained consistent across all conditions. A clear trend of decreasing astaxanthin values was observed, with some statistically significant differences suggesting a possible effect of depth. There is more concentrated astaxanthin in shrimp caught at shallower depths and decreases as the depth increases. A significant negative correlation was observed between astaxanthin content and most amino acids, particularly methionine, valine, and alanine, with this trend more pronounced in shrimp with eggs. These findings indicate that astaxanthin and amino acids could experience functional variations depending on environmental conditions.</div></div>","PeriodicalId":21070,"journal":{"name":"Regional Studies in Marine Science","volume":"95 ","pages":"Article 104818"},"PeriodicalIF":2.4,"publicationDate":"2026-01-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146090452","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}