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Pathways of amyloid fibril formation and protein aggregation. 淀粉样纤维形成和蛋白质聚集的途径。
3区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 Epub Date: 2024-04-15 DOI: 10.1016/bs.pmbts.2024.03.010
Elaheh Tavili, Fatemeh Aziziyan, Bahareh Dabirmanesh

The main cause of many neurodegenerative diseases and systemic amyloidoses is protein and peptide aggregation and the formation of amyloid fibrils. The study of aggregation mechanisms, the discovery and description of aggregate structures, and a comprehensive understanding of the molecular mechanisms of amyloid formation are of great importance for the diagnostic processes at the molecular level and for the development of therapeutic strategies to counter aggregation-associated disorders. Given that understanding protein misfolding phenomena is directly related to the protein folding process, we will briefly explain the protein folding mechanism and then discuss the important factors involved in protein aggregation. In the following, we review different mechanisms of amyloid formation and finally represent the current knowledge on how amyloid fibrils are formed based on kinetic and thermodynamic factors.

许多神经退行性疾病和全身性淀粉样变性疾病的主要病因是蛋白质和肽的聚集以及淀粉样纤维的形成。研究聚集机制、发现和描述聚集结构以及全面了解淀粉样蛋白形成的分子机制,对于分子水平的诊断过程和开发治疗策略以应对聚集相关疾病具有重要意义。鉴于对蛋白质错误折叠现象的理解与蛋白质折叠过程直接相关,我们将简要解释蛋白质折叠机制,然后讨论参与蛋白质聚集的重要因素。接下来,我们将回顾淀粉样蛋白形成的不同机制,最后根据动力学和热力学因素介绍淀粉样蛋白纤维是如何形成的。
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引用次数: 0
Protein aggregation: An overview. 蛋白质聚集:概述。
3区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 Epub Date: 2024-03-31 DOI: 10.1016/bs.pmbts.2024.03.007
Bahareh Dabirmanesh, Khosro Khajeh, Vladimir N Uversky

In order for an ordered protein to perform its specific function, it must have a specific molecular structure. Information about this structure is encoded in the protein's amino acid sequence. The unique functional state is achieved as a result of a specific process, known as protein folding. However, as a result of partial or complete unfolding of the polypeptide chain, proteins may misfold and aggregate, leading to the formation of various aggregated structures, such as like amyloid aggregates with the cross-β structure. A variety of cellular biological processes can be affected by protein aggregates that consume essential factors necessary for maintaining proteostasis, which leads to the proteostasis imbalance and further accumulation of protein aggregates, often resulting in age-related neurodegenerative disease progression and aging. However, in addition to their well-established pathological effects, amyloids also play various physiological roles, and many important biological processes involve such 'functional amyloids'. This chapter represents a brief overview of the protein aggregation phenomenon outlines a timeline provides of some key discoveries in this exciting field.

为了使有序蛋白质发挥其特定功能,它必须具有特定的分子结构。这种结构的信息编码在蛋白质的氨基酸序列中。这种独特的功能状态是通过一个特定的过程(即蛋白质折叠)实现的。然而,由于多肽链的部分或完全折叠,蛋白质可能会错误折叠和聚集,从而形成各种聚集结构,如具有交叉β结构的淀粉样聚集体。蛋白质聚集会影响多种细胞生物过程,消耗维持蛋白稳态所需的重要因子,导致蛋白稳态失衡和蛋白质聚集的进一步积累,往往会造成与年龄相关的神经退行性疾病的发展和衰老。然而,淀粉样蛋白除了具有公认的病理效应外,还发挥着各种生理作用,许多重要的生物过程都涉及此类 "功能性淀粉样蛋白"。本章简要概述了蛋白质聚集现象,并提供了这一激动人心的领域中一些重要发现的时间轴。
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引用次数: 0
Current progress in CRISPR-Cas systems for autoimmune diseases. CRISPR-Cas 系统在治疗自身免疫性疾病方面的最新进展。
3区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 Epub Date: 2024-08-14 DOI: 10.1016/bs.pmbts.2024.07.011
Juveriya Israr, Ajay Kumar

A body develops an autoimmune illness when its immune system mistakenly targets healthy cells and organs. Eight million people are affected by more than 80 autoimmune diseases. The public's and individuals' well-being is put at risk. Type 1 diabetes, lupus, rheumatoid arthritis, and multiple sclerosisare autoimmune diseases. Tissue injury, nociceptive responses, and persistent inflammation are the results of these stresses. Concerns about healthcare costs, health, and physical limitations contribute to these issues. Given their prevalence, it is crucial to enhance our knowledge, conduct thorough research, and provide all-encompassing support to women dealing with autoimmune diseases. This will lead to better public health and better patient outcomes. Most bacteria's immune systems employ CRISPR-Cas, a state-of-the-art technique for editing genes. For Cas to break DNA with pinpoint accuracy, a guide RNA employs a predetermined enzymatic pathway. Genetic modifications started. After it was developed, this method was subjected to much research on autoimmune diseases. By modifying immune pathways, CRISPR gene editing can alleviate symptoms, promote immune system tolerance, and decrease autoimmune reactivity. The autoimmune diseases that CRISPR-Cas9 targets now have no treatment or cure. Results from early clinical trials and preclinical studies of autoimmune medicines engineered using CRISPR showed promise. Modern treatments for rheumatoid arthritis,multiple sclerosis, and type 1 diabetes aim to alter specific genetic or immune mechanisms. Accurate CRISPR editing can fix autoimmune genetic disorders. Modifying effector cells with CRISPR can decrease autoimmune reactions. These cells include cytotoxic T and B lymphocytes. Because of improvements in delivery techniques and kits, CRISPR medications are now safer, more effective, and more accurately targeted. It all comes down to intricate immunological reactions and unexpected side consequences. Revolutionary cures for autoimmune problems and highly personalized medical therapies have been made possible by recent advancements in CRISPR.

当人体的免疫系统错误地将健康细胞和器官作为攻击目标时,人体就会患上自身免疫性疾病。有 800 万人受到 80 多种自身免疫性疾病的影响。公众和个人的健康受到威胁。1 型糖尿病、红斑狼疮、类风湿性关节炎和多发性硬化症都是自身免疫性疾病。组织损伤、痛觉反应和持续炎症是这些压力的结果。人们对医疗费用、健康和身体限制的担忧也是造成这些问题的原因之一。鉴于这些问题的普遍性,我们必须加强了解、开展深入研究,并为患有自身免疫性疾病的妇女提供全方位的支持。这将提高公众健康水平,改善患者的治疗效果。大多数细菌的免疫系统都采用 CRISPR-Cas,这是一种最先进的基因编辑技术。为使Cas能准确无误地破坏DNA,引导RNA采用了预先确定的酶解途径。基因修改开始了。这种方法开发出来后,对自身免疫性疾病进行了大量研究。通过修改免疫途径,CRISPR 基因编辑可以缓解症状,促进免疫系统的耐受性,降低自身免疫反应性。CRISPR-Cas9所针对的自身免疫性疾病目前尚无治疗或治愈方法。利用CRISPR技术设计的自体免疫药物的早期临床试验和临床前研究结果表明,这种药物很有前景。类风湿性关节炎、多发性硬化症和 1 型糖尿病的现代疗法旨在改变特定的遗传或免疫机制。精确的CRISPR编辑可以修复自身免疫性遗传疾病。用CRISPR技术修改效应细胞可以减少自身免疫反应。这些细胞包括细胞毒性 T 淋巴细胞和 B 淋巴细胞。由于给药技术和试剂盒的改进,CRISPR 药物现在更安全、更有效、靶向性更准确。这一切都归结于错综复杂的免疫反应和意想不到的副作用。CRISPR技术的最新进展使自身免疫问题的革命性治疗和高度个性化的医疗疗法成为可能。
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引用次数: 0
Preface. 序言
3区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 DOI: 10.1016/S1877-1173(24)00207-2
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引用次数: 0
The promise, progress, and challenges of in situ immunization agents in cancer immunotherapy. 癌症免疫疗法中原位免疫制剂的前景、进展和挑战。
3区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 Epub Date: 2024-05-31 DOI: 10.1016/bs.pmbts.2024.02.004
Matthew J Giacalone

In situ immunization (ISI) agents are an emerging and diverse class of locally acting cancer immunotherapeutic agents designed to promote innate immune activation in the early steps of the cancer immunity cycle to ultimately support development of a systemic tumor-specific immune response and protective immunologic memory. The aims of this review are to: (i) provide an introduction to ISI; (ii) summarize the history of ISI agents; (iii) expound upon the mechanism(s) and therapeutic objective(s) of ISI; (iv) compare the various approaches and therapeutic modalities developed and investigated to date; and (v) summarize clinical experiences in an effort to highlight the utility as well as the lessons and challenges of this promising approach. A prospective roadmap for future clinical development is provided that focuses on early and late-stage trial design considerations, the rationale and importance of investigating combination treatment, and the prospective use of ISI agents in the neoadjuvant setting.

原位免疫(ISI)药物是一类新兴的、多样化的局部作用癌症免疫治疗药物,旨在促进癌症免疫周期早期的先天性免疫激活,最终支持全身性肿瘤特异性免疫反应和保护性免疫记忆的发展。本综述旨在(i) 介绍 ISI;(ii) 总结 ISI 制剂的历史;(iii) 阐述 ISI 的机制和治疗目标;(iv) 比较迄今为止开发和研究的各种方法和治疗模式;(v) 总结临床经验,以强调这种前景广阔的方法的效用、教训和挑战。报告还提供了未来临床开发的前瞻性路线图,重点关注早期和晚期试验设计的考虑因素、研究联合治疗的合理性和重要性,以及 ISI 药物在新辅助治疗中的前瞻性应用。
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引用次数: 0
Drug repurposing for neurodegenerative diseases. 针对神经退行性疾病的药物再利用。
3区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 Epub Date: 2024-05-22 DOI: 10.1016/bs.pmbts.2024.03.035
Halak Shukla, Diana John, Shuvomoy Banerjee, Anand Krishna Tiwari

Neurodegenerative diseases (NDDs) are neuronal problems that include the brain and spinal cord and result in loss of sensory and motor dysfunction. Common NDDs include Alzheimer's disease (AD), Parkinson's disease (PD), Huntington's disease (HD), Multiple Sclerosis (MS), and Amyotrophic Lateral Sclerosis (ALS) etc. The occurrence of these diseases increases with age and is one of the challenging problems among elderly people. Though, several scientific research has demonstrated the key pathologies associated with NDDs still the underlying mechanisms and molecular details are not well understood and need to be explored and this poses a lack of effective treatments for NDDs. Several lines of evidence have shown that NDDs have a high prevalence and affect more than a billion individuals globally but still, researchers need to work forward in identifying the best therapeutic target for NDDs. Thus, several researchers are working in the directions to find potential therapeutic targets to alter the disease pathology and treat the diseases. Several steps have been taken to identify the early detection of the disease and drug repurposing for effective treatment of NDDs. Moreover, it is logical that current medications are being evaluated for their efficacy in treating such disorders; therefore, drug repurposing would be an efficient, safe, and cost-effective way in finding out better medication. In the current manuscript we discussed the utilization of drugs that have been repurposed for the treatment of AD, PD, HD, MS, and ALS.

神经退行性疾病(NDDs)是包括大脑和脊髓在内的神经元问题,会导致感觉和运动功能障碍。常见的神经退行性疾病包括阿尔茨海默病(AD)、帕金森病(PD)、亨廷顿病(HD)、多发性硬化症(MS)和肌萎缩侧索硬化症(ALS)等。这些疾病的发病率随着年龄的增长而增加,是老年人面临的难题之一。尽管一些科学研究已经证明了与 NDDs 相关的主要病理,但对其潜在的机制和分子细节仍不甚了解,有待探索,这就造成了 NDDs 缺乏有效的治疗方法。一些证据表明,NDDs 的发病率很高,影响着全球十多亿人,但研究人员仍需努力确定 NDDs 的最佳治疗靶点。因此,一些研究人员正在努力寻找潜在的治疗靶点,以改变疾病病理和治疗疾病。目前已采取多项措施来确定疾病的早期检测方法,并重新设计药物用途,以有效治疗 NDDs。此外,目前正在对现有药物治疗此类疾病的疗效进行评估,这也是合乎逻辑的;因此,药物再利用将是寻找更好药物的一种高效、安全和具有成本效益的方法。在本手稿中,我们讨论了如何利用已被改变用途的药物来治疗注意力缺失症(AD)、帕金森病(PD)、脑退化症(HD)、多发性硬化症(MS)和肌萎缩性脊髓侧索硬化症(ALS)。
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引用次数: 0
Drug repurposing for cancer. 癌症药物的再利用。
3区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 Epub Date: 2024-05-11 DOI: 10.1016/bs.pmbts.2024.03.032
Juni Banerjee, Anand Krishna Tiwari, Shuvomoy Banerjee

In the dynamic landscape of cancer therapeutics, the innovative strategy of drug repurposing emerges as a transformative paradigm, heralding a new era in the fight against malignancies. This book chapter aims to embark on the comprehension of the strategic deployment of approved drugs for repurposing and the meticulous journey of drug repurposing from earlier times to the current era. Moreover, the chapter underscores the multifaceted and complex nature of cancer biology, and the evolving field of cancer drug therapeutics while emphasizing the mandate of drug repurposing to advance cancer therapeutics. Importantly, the narrative explores the latest tools, technologies, and cutting-edge methodologies including high-throughput screening, omics technologies, and artificial intelligence-driven approaches, for shaping and accelerating the pace of drug repurposing to uncover novel cancer therapeutic avenues. The chapter critically assesses the breakthroughs, expanding the repertoire of repurposing drug candidates in cancer, and their major categories. Another focal point of this book chapter is that it addresses the emergence of combination therapies involving repurposed drugs, reflecting a shift towards personalized and synergistic treatment approaches. The expert analysis delves into the intricacies of combinatorial regimens, elucidating their potential to target heterogeneous cancer populations and overcome resistance mechanisms, thereby enhancing treatment efficacy. Therefore, this chapter provides in-depth insights into the potential of repurposing towards bringing the much-needed big leap in the field of cancer therapeutics.

在充满活力的癌症治疗领域,药物再利用的创新战略成为一种变革性范式,预示着抗击恶性肿瘤的新时代即将到来。本书的这一章旨在了解获批药物再利用的战略部署,以及药物再利用从早期到当代的细致历程。此外,本章还强调了癌症生物学的多面性和复杂性,以及不断发展的癌症药物治疗领域,同时强调了药物再利用以推进癌症治疗的任务。重要的是,本章探讨了最新的工具、技术和前沿方法,包括高通量筛选、omics 技术和人工智能驱动的方法,以塑造和加快药物再利用的步伐,发现新的癌症治疗途径。本章批判性地评估了这些突破,扩大了癌症候选药物的再利用范围及其主要类别。本书的另一个重点是探讨了涉及再利用药物的联合疗法的出现,这反映了向个性化和协同治疗方法的转变。专家分析深入探讨了组合疗法的复杂性,阐明了其针对异质性癌症群体和克服抗药性机制的潜力,从而提高了治疗效果。因此,本章深入探讨了再利用的潜力,以期为癌症治疗领域带来急需的巨大飞跃。
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引用次数: 0
Drug repurposing for parasitic protozoan diseases. 针对寄生虫原生动物疾病的药物再利用。
3区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 Epub Date: 2024-05-16 DOI: 10.1016/bs.pmbts.2024.05.001
Vijayasurya, Swadha Gupta, Smit Shah, Anju Pappachan

Protozoan parasites are major hazards to human health, society, and the economy, especially in equatorial regions of the globe. Parasitic diseases, including leishmaniasis, malaria, and others, contribute towards majority of morbidity and mortality. Around 1.1 million people die from these diseases annually. The lack of licensed vaccinations worsens the worldwide impact of these diseases, highlighting the importance of safe and effective medications for their prevention and treatment. However, the appearance of drug resistance in parasites continuously affects the availability of medications. The demand for novel drugs motivates global antiparasitic drug discovery research, necessitating the implementation of many innovative ways to maintain a continuous supply of promising molecules. Drug repurposing has come out as a compelling tool for drug development, offering a cost-effective and efficient alternative to standard de novo approaches. A thorough examination of drug repositioning candidates revealed that certain drugs may not benefit significantly from their original indications. Still, they may exhibit more pronounced effects in other disorders. Furthermore, certain medications can produce a synergistic effect, resulting in enhanced therapeutic effectiveness when given together. In this chapter, we outline the approaches employed in drug repurposing (sometimes referred to as drug repositioning), propose novel strategies to overcome these hurdles and fully exploit the promise of drug repurposing. We highlight a few major human protozoan diseases and a range of exemplary drugs repurposed for various protozoan infections, providing excellent outcomes for each disease.

原生动物寄生虫是人类健康、社会和经济的主要危害,尤其是在全球赤道地区。寄生虫病,包括利什曼病、疟疾和其他疾病,造成了大多数人的发病率和死亡率。每年约有 110 万人死于这些疾病。由于缺乏获得许可的疫苗,这些疾病对全球的影响更加严重,这凸显了安全有效的药物对预防和治疗这些疾病的重要性。然而,寄生虫抗药性的出现不断影响着药物的供应。对新型药物的需求推动了全球抗寄生虫药物的发现研究,这就需要采用许多创新方法来保持有前景分子的持续供应。药物再利用已成为药物开发的一个引人注目的工具,它为标准的从头开始方法提供了一种具有成本效益和高效率的替代方法。对候选药物重新定位的全面研究表明,某些药物可能不会从其原始适应症中获得显著益处。不过,它们在其他疾病中可能会表现出更明显的效果。此外,某些药物还能产生协同效应,从而在同时使用时提高治疗效果。在本章中,我们将概述药物再利用(有时也称为药物再定位)所采用的方法,提出克服这些障碍的新策略,并充分利用药物再利用的前景。我们重点介绍了几种主要的人类原生动物疾病,以及一系列针对各种原生动物感染重新定位的药物,这些药物在每种疾病中都取得了很好的疗效。
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引用次数: 0
RNA therapeutics for β-thalassemia. 治疗β地中海贫血症的 RNA 疗法。
3区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 Epub Date: 2024-01-24 DOI: 10.1016/bs.pmbts.2023.12.006
Hong-Quan Duong, Thi-Hue Nguyen, Minh-Cong Hoang, Van-Lang Ngo, Van-Thu Le

β-thalassemia is an autosomal recessive disease, caused by one or more mutations in the β-globin gene that reduces or abolishes β-globin chain synthesis causing an imbalance in the ratio of α- and β-globin chain. Therefore, the ability to target mutations will provide a good result in the treatment of β-thalassemia. RNA therapeutics represents a promising class of drugs inclusive antisense oligonucleotides (ASO), small interfering RNA (siRNA), microRNA (miRNA) and APTAMER have investigated in clinical trials for treatment of human diseases as β-thalassemia; Especially, ASO therapeutics can completely treat β-thalassemia patients by the way of making ASO infiltrating through erythrocyte progenitor cells, migrating to the nucleus and hybridizing with abnormal splicing sites to suppress an abnormal splicing pattern of β-globin pre-mRNA. As a result, the exactly splicing process is restored to increase the expression of β-globin which increases the amount of mature hemoglobin of red blood cells of β-thalassemia patients. Furthermore, current study demonstrates that RNA-based therapeutics get lots of good results for β-thalassemia patients. Then, this chapter focuses on current advances of RNA-based therapeutics and addresses current challenges with their development and application for treatment of β-thalassemia patients.

β-地中海贫血症是一种常染色体隐性遗传病,是由β-球蛋白基因中的一个或多个突变引起的,突变导致β-球蛋白链合成减少或消失,造成α-和β-球蛋白链比例失调。因此,针对突变的能力将为治疗β-地中海贫血症带来良好的效果。RNA 疗法是一类很有前景的药物,包括反义寡核苷酸(ASO)、小干扰 RNA(siRNA)、微 RNA(miRNA)和 APTAMER;特别是 ASO 疗法,通过使 ASO 渗入红细胞祖细胞,迁移到细胞核,与异常剪接位点杂交,抑制β-球蛋白前核糖核酸的异常剪接模式,从而彻底治疗β-地中海贫血症患者。结果,准确的剪接过程得以恢复,从而增加了β-球蛋白的表达,增加了β-地中海贫血患者红细胞中成熟血红蛋白的数量。此外,目前的研究表明,基于 RNA 的疗法对 β 型地中海贫血症患者有许多良好的效果。接下来,本章将重点介绍基于 RNA 的疗法的最新进展,并探讨其在开发和应用于治疗 β 型地中海贫血症患者方面所面临的挑战。
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引用次数: 0
Advances in CRISPR/Cas systems-based cell and gene therapy. 基于 CRISPR/Cas 系统的细胞和基因疗法的进展。
3区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 Epub Date: 2024-08-12 DOI: 10.1016/bs.pmbts.2024.07.005
Arpita Poddar, Farah Ahmady, Prashanth Prithviraj, Rodney B Luwor, Ravi Shukla, Shakil Ahmed Polash, Haiyan Li, Suresh Ramakrishna, George Kannourakis, Aparna Jayachandran

Cell and gene therapy are innovative biomedical strategies aimed at addressing diseases at their genetic origins. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) systems have become a groundbreaking tool in cell and gene therapy, offering unprecedented precision and versatility in genome editing. This chapter explores the role of CRISPR in gene editing, tracing its historical development and discussing biomolecular formats such as plasmid, RNA, and protein-based approaches. Next, we discuss CRISPR delivery methods, including viral and non-viral vectors, followed by examining the various engineered CRISPR variants for their potential in gene therapy. Finally, we outline emerging clinical applications, highlighting the advancements in CRISPR for breakthrough medical treatments.

细胞和基因治疗是一种创新的生物医学策略,旨在从基因源头解决疾病问题。CRISPR(Clustered Regularly Interspaced Short Palindromic Repeats)系统已成为细胞和基因治疗的开创性工具,为基因组编辑提供了前所未有的精确性和多功能性。本章将探讨 CRISPR 在基因编辑中的作用,追溯其历史发展,并讨论生物分子格式,如基于质粒、RNA 和蛋白质的方法。接下来,我们讨论了 CRISPR 的传递方法,包括病毒载体和非病毒载体,然后研究了各种 CRISPR 工程变体在基因治疗中的潜力。最后,我们概述了新兴的临床应用,重点介绍了 CRISPR 在突破性医学治疗方面取得的进展。
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引用次数: 0
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Progress in molecular biology and translational science
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