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Discovery of indole- and quinolone-based inhibitors of the mTOR/Akt/Pi3K pathway for the potential treatment of autism and certain types of cancer 发现基于吲哚和喹诺酮的mTOR/Akt/Pi3K通路抑制剂,可能治疗自闭症和某些类型的癌症。
IF 3.6 4区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-10-08 DOI: 10.1039/D5MD00641D
Ahmad Elshahary, Hesham Safwan, Ahmad Abdelwaly, Reem K. Arafa and Mohamed A. Helal

Mammalian target of rapamycin (mTOR) is a serine/threonine kinase that belongs to the PI3K-related protein kinase family. It is an integral part of two functionally distinct protein complexes: mTOR complex 1 and mTOR complex 2. Its signaling pathway is linked to cell survival, growth, proliferation, and motility. Deregulation of the mTOR pathway has been reported in many types of cancer. Hence, mTOR is an attractive target for the treatment of certain cancers such as renal cell carcinoma and pancreatic tumors. In addition, hyperactivity in mTOR-mediated signaling is associated with the pathogenesis of autism spectrum disorder (ASD) and Alzheimer's disease. Recently, mTOR inhibitors have been considered as emerging pharmacotherapy for these disorders. In this research, we have used molecular modeling techniques to design three series of compounds, indoles, β-carbolines, and 4-aminoquinolines, targeting the ATP site of the mTOR kinase. Based on insights from molecular docking, we developed twenty eight derivatives of these scaffolds to explore the SAR and optimize their affinities. The prepared compounds were evaluated for their inhibitory activity against mTOR as well as other closely related kinases such as PI3K and AKt. To our delight, twenty compounds have shown sub-micromolar activities towards the mTOR kinase. Compounds HA-2l and HA-2c showed a superior IC50 of 66 and 75 nM, respectively, for mTOR, while being selective against AKt and Pi3K. Upon optimization, these selective inhibitors could be useful for the management of ASD due to their relatively higher safety and, hence, suitability for long-term use. On the other hand, derivatives HA-1e, HA-2g, and HA-3d exhibited high affinities for the three enzymes, suggesting their potential utility as anticancer agents. Also, the cytotoxicity of the most active compounds was assessed using different cell-lines. Compounds HA-2g, HA-2l, and HA-3d showed sub-micromolar inhibition, in the range of 0.610–0.780 μM, against the tested cancer cell lines MDA-MB231 and HCT-116. The discovery of a clinically useful mTOR inhibitor would represent a new hope for patients of two important non-communicable diseases, cancer and ASD.

哺乳动物雷帕霉素靶蛋白(mTOR)是一种丝氨酸/苏氨酸激酶,属于pi3k相关蛋白激酶家族。它是两个功能不同的蛋白质复合物:mTOR复合物1和mTOR复合物2的组成部分。其信号通路与细胞存活、生长、增殖和运动有关。据报道,许多类型的癌症都存在mTOR通路的失调。因此,mTOR是治疗某些癌症如肾细胞癌和胰腺肿瘤的一个有吸引力的靶点。此外,mtor介导的信号通路的过度活跃与自闭症谱系障碍(ASD)和阿尔茨海默病的发病机制有关。最近,mTOR抑制剂被认为是这些疾病的新兴药物治疗方法。在这项研究中,我们利用分子建模技术设计了三个系列的化合物,吲哚,β-碳碱和4-氨基喹啉,靶向mTOR激酶的ATP位点。基于分子对接的见解,我们开发了这些支架的28个衍生物,以探索SAR并优化它们的亲和力。所制备的化合物对mTOR以及其他密切相关的激酶如PI3K和AKt的抑制活性进行了评估。令我们高兴的是,有20种化合物对mTOR激酶表现出亚微摩尔的活性。化合物HA-2l和HA-2c对mTOR的IC50分别为66 nM和75 nM,同时对AKt和Pi3K具有选择性。经过优化,这些选择性抑制剂由于其相对较高的安全性,因此适合长期使用,可用于ASD的治疗。另一方面,HA-1e, HA-2g和HA-3d衍生物对这三种酶表现出高亲和力,表明它们具有潜在的抗癌作用。此外,使用不同的细胞系评估了最有效化合物的细胞毒性。化合物HA-2g、HA-2l和HA-3d对肿瘤细胞株MDA-MB231和HCT-116的抑制作用在0.610 ~ 0.780 μM范围内。临床有用的mTOR抑制剂的发现将为癌症和自闭症这两种重要非传染性疾病的患者带来新的希望。
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引用次数: 0
The versatile synthesis and biological evaluation of all-alkyl biscationic quaternary phosphonium compounds: atom-economical and potent disinfectants 全烷基双基季磷化合物的多用途合成及生物学评价:原子经济高效消毒剂。
IF 3.6 4区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-10-08 DOI: 10.1039/D5MD00660K
Diana McDonough, Elise L. Bezold, William M. Wuest and Kevin P. C. Minbiole

Given the growing resistance to traditional quaternary ammonium compounds (QACs) – long used as primary disinfectants – there is an urgent need for structurally distinct alternatives to effectively combat infectious threats. Quaternary phosphonium compounds (QPCs) have recently emerged as a promising alternative class, demonstrating strong activity even against highly drug-resistant strains. Herein, we present a novel series of 16 all-alkyl biscationic QPCs, designed to expand the scope of atom-economical cationic biocides and evaluate their potential as next-generation disinfectants. Strong and broad bioactivity against a panel of eight bacterial pathogens was observed, with six analogs achieving single-digit micromolar activity across all strains tested. Structure–activity analysis revealed that optimal bioactivity correlates with 10–12 carbon alkyl side chains and longer charge-separating linkers (m = 8–10), which render the structures bolaamphiphilic. Comparisons between bisQAC and bisQPC analogs suggest that substituting the ammonium center with phosphonium had minimal impact on antimicrobial potency, but synthetic versatility allowed access to novel and potent QPC structures. This work underscores the potential of bisQPCs in the development novel and potent disinfectants.

鉴于对传统季铵化合物(QACs)(长期用作一级消毒剂)的耐药性日益增强,迫切需要结构独特的替代品来有效对抗传染性威胁。季磷化合物(QPCs)最近成为一种有前途的替代类别,即使对高度耐药菌株也表现出很强的活性。在此,我们提出了一系列新的16个全烷基双基qpc,旨在扩大原子经济型阳离子杀菌剂的范围,并评估它们作为下一代消毒剂的潜力。观察到对一组8种细菌病原体具有强大而广泛的生物活性,其中6种类似物在所有测试菌株中均达到个位数的微摩尔活性。结构-活性分析表明,最佳生物活性与10-12碳烷基侧链和较长的电荷分离连接体(m = 8-10)相关,这使得结构具有亲亲性。bisQAC和bisQPC类似物的比较表明,用磷取代铵中心对抗菌效力的影响最小,但合成的多功能性允许获得新颖有效的QPC结构。这项工作强调了bisQPCs在开发新型强效消毒剂方面的潜力。
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引用次数: 0
Harnessing photodynamic therapy for programmed cell death: the central role and contributions of metal complexes as next generation photosensitizers 利用光动力治疗程序性细胞死亡:金属配合物作为下一代光敏剂的核心作用和贡献。
IF 3.6 4区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-10-07 DOI: 10.1039/D5MD00630A
Sreejani Ghosh, Rinku Chakrabarty and Priyankar Paira

A fundamental biological mechanism, programmed cell death (PCD), is essential for tissue homeostasis, immunological control, and development. Its dysregulation is a characteristic of many diseases in multicellular organisms, including cancer, where unchecked proliferation is made possible by evading cell death. Therefore, one of the main tenets of contemporary anticancer therapies is the restoration or induction of PCD in cancer cells. One potential, least invasive method among these is photodynamic treatment (PDT). PDT uses light-activatable photosensitisers, which cause cancer cells to explode with reactive oxygen species (ROS) when exposed to light. These ROS harm important biomolecules, throw off the cellular redox equilibrium, and cause cells to die. PDT-induced cell death was previously believed to be mostly caused by autophagy, necrosis, or apoptosis. Recent research, however, has shown that it can trigger a wider range of unconventional cell death pathways. ROS can cause ferroptosis by oxidising membrane lipids, fragmenting DNA, and lowering intracellular glutathione (GSH) levels. Similarly, necroptosis or pyroptosis can result from severe oxidative stress activating death receptor signalling. Sometimes, in response, cells use survival strategies like autophagy, which can also lead to cell death. This review explores these new, unconventional methods of cell death and how PDT can be used to take advantage of them. Next-generation photosensitisers based on iridium (Ir), ruthenium (Ru), and rhenium (Re) complexes are given special attention because they provide deep tissue penetration, improved photostability, and adjustable ROS production. Their incorporation into PDT has revolutionary potential for improving cancer treatment precision and conquering therapeutic resistance.

程序性细胞死亡(PCD)是一种基本的生物学机制,对组织稳态、免疫控制和发育至关重要。它的失调是多细胞生物中许多疾病的一个特征,包括癌症,其中不受控制的增殖通过逃避细胞死亡而成为可能。因此,当代抗癌治疗的主要原则之一是恢复或诱导癌细胞中的PCD。其中一种潜在的、侵入性最小的方法是光动力治疗(PDT)。PDT使用可光激活的光敏剂,当暴露在光下时,它会导致癌细胞与活性氧(ROS)爆炸。这些活性氧损害重要的生物分子,破坏细胞氧化还原平衡,导致细胞死亡。以前认为pdt诱导的细胞死亡主要是由自噬、坏死或凋亡引起的。然而,最近的研究表明,它可以引发更广泛的非常规细胞死亡途径。ROS可通过氧化膜脂、DNA片段化和降低细胞内谷胱甘肽(GSH)水平引起铁下垂。同样,坏死或焦亡也可由严重的氧化应激激活死亡受体信号引起。有时,作为回应,细胞使用自噬等生存策略,这也会导致细胞死亡。这篇综述探讨了这些新的、非常规的细胞死亡方法,以及如何利用PDT来利用它们。下一代基于铱(Ir),钌(Ru)和铼(Re)配合物的光敏剂受到特别关注,因为它们提供深层组织穿透,改善光稳定性和可调节ROS的产生。将它们结合到PDT中,对于提高癌症治疗精度和克服治疗耐药性具有革命性的潜力。
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引用次数: 0
Correction: Emerging opportunities in the rewiring of biology through proximity inducing small molecules 更正:通过近距离诱导小分子,生物学重新布线的新机会。
IF 3.6 4区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-10-07 DOI: 10.1039/D5MD90040A
Michael M. Hann

Correction for ‘Emerging opportunities in the rewiring of biology through proximity inducing small molecules’ by Michael M. Hann, RSC Med. Chem., 2025, https://doi.org/10.1039/d5md00608b.

[更正文章DOI: 10.1039/D5MD00608B.]。
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引用次数: 0
Cyclodextrin derivatives that exhibit Enterococcus-specific antibacterial properties through the accumulation of guanidino and indole groups 环糊精衍生物通过胍和吲哚基团的积累表现出肠球菌特异性抗菌特性。
IF 3.6 4区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-10-03 DOI: 10.1039/D5MD00525F
Atsushi Miyagawa, Tetsuro Higashino, Hisato Kato, Kazufumi Masuda and Hatsuo Yamamura

In light of the growing challenge posed by drug resistance, the focus of our research has been on the development of novel antibacterial substances. The approach involves the attachment of antibacterial functional groups to oligosaccharide, known as cyclodextrin, utilising antimicrobial peptides possessing hydrophobic groups and cationic groups as a model system. The cyclodextrin derivative, which contains seven pairs of indole rings and guanidino groups, was synthesised and exhibited potent antibacterial properties that were selective for Enterococcus faecalis. Conversely, a compound comprising a single set of functional groups was selectively antibacterial against Staphylococcus aureus. These were unique phenomena in that they were completely different from the peptides containing indole and guanidino groups and the previously reported antibacterial cyclodextrins modified with alkylamino groups that showed a broad antibacterial spectrum. The results will lead to the discovery of new chemical compounds (or functional groups) those will demonstrate specific antibacterial properties for pathogens and may be useful in the fields of cyclodextrin chemistry and development of antibacterial drugs and materials, particularly in the fight against multidrug-resistant pathogens.

鉴于耐药性带来的挑战越来越大,我们的研究重点一直是开发新的抗菌物质。该方法包括将抗菌官能团连接到寡糖上,即环糊精,利用具有疏水性基团和阳离子基团的抗菌肽作为模型系统。该环糊精衍生物含有7对吲哚环和胍基,对粪肠球菌具有选择性的抗菌性能。相反,含有单组官能团的化合物对金黄色葡萄球菌具有选择性抗菌作用。这是一种独特的现象,它与含有吲哚和胍基的肽完全不同,也与先前报道的具有广泛抗菌谱的烷基胺修饰的抗菌环糊精完全不同。这一结果将导致新的化合物(或官能团)的发现,这些化合物将显示出对病原体的特定抗菌特性,并可能在环糊精化学和抗菌药物和材料的开发领域有用,特别是在对抗多重耐药病原体方面。
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引用次数: 0
Antibacterial peptidomimetics based on guanidine-functionalized di-tertiary amides 基于胍功能化二叔胺的抗菌肽模拟物。
IF 3.6 4区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-10-01 DOI: 10.1039/D5MD00688K
Ghayah Bahatheg, Rajesh Kuppusamy, Lissy M. Hartmann, Charles G. Cranfield, David StC. Black, Mark Willcox and Naresh Kumar

Tertiary amides such as peptoids are a novel class of peptidomimetics that offer enhanced structure, activity, and stability compared to many naturally occurring antimicrobial peptides. Guanidino compounds have gained interest in medicinal chemistry as cell-penetrating molecules. This work investigates the changes in the antibacterial activity of modified guanidino groups on the structure of active guanidino tertiary amides by incorporating lipophilic, hydrophobic, and extra cationic groups, thereby combining the properties of the tertiary amide in the peptoid backbone with the important role of addition of extra cationic and lipophilic residues, such as those in AMPs, but supported by guanidine backbones. A library of active antibacterial bromo-phenyl and dichloro-phenyl-based guanidinium tertiary amides, including three series, was designed. These compounds exhibited MICs of 1–2 μg mL−1, 4–8 μg mL−1, and 16.5–35.6 μg mL−1 against S. aureus, E. coli, and P. aeruginosa, respectively. Tertiary amides with their guanidine bearing an alkylated cationic group of 3C (19a and 20a) and 6C (19b and 20b) length resulted in the most active molecules against all tested strains. Additionally, at 8× MIC, compound 19b was the most effective S. aureus biofilm disruptor, disrupting 75% of the biofilm, while compound 19g was the most active molecule against E. coli biofilm, with 50% disruption. The membrane permeability and QCM-D studies suggested that the designed cationic tertiary amides could depolarize and disrupt the bacterial cell membrane. The most potent peptoids were non-toxic, with HC50 of more than 50 μg mL−1.

叔酰胺如类肽是一类新型的类肽,与许多天然抗菌肽相比,具有增强的结构、活性和稳定性。胍类化合物作为穿透细胞的分子在药物化学中引起了广泛的关注。本研究通过加入亲脂、疏水和额外的阳离子基团,研究了修饰的胍基对活性胍基叔胺结构的抗菌活性的变化,从而将类肽骨架中的叔酰胺的特性与添加额外的阳离子和亲脂性残基(如在amp中,但由胍基骨架支持的残基)的重要作用结合起来。设计了具有抗菌活性的溴苯基和二氯苯基胍叔酰胺文库,包括三个系列。这些化合物对金黄色葡萄球菌、大肠杆菌和铜绿假单胞菌的mic分别为1 ~ 2 μg mL-1、4 ~ 8 μg mL-1和16.5 ~ 35.6 μg mL-1。叔胺的胍具有3C (19a和20a)和6C (19b和20b)长度的烷基化阳离子基团,对所有测试菌株的活性最强。此外,在8倍MIC下,化合物19b是最有效的金黄色葡萄球菌生物膜破坏者,破坏了75%的生物膜,而化合物19g是对大肠杆菌生物膜最活跃的分子,破坏了50%。膜通透性和QCM-D研究表明,所设计的阳离子叔酰胺具有去极化和破坏细菌细胞膜的作用。最有效的类肽是无毒的,HC50大于50 μg mL-1。
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引用次数: 0
Sequence-controlled peptoid hydrogels for neuronal trans-differentiation: a synthetic biomaterials approach in future neuroregenerative research 用于神经元反式分化的序列控制类肽水凝胶:未来神经再生研究中的合成生物材料方法。
IF 3.6 4区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-09-29 DOI: 10.1039/D5MD00610D
Deviramma C. Yamanur, Pratikshya Paudel and Prabir Kumar Gharai

Peptide-based hydrogels stimulate stem cell differentiation into neurons, improve neuroprotection, and aid in spinal cord/brain injury repair by moderating inflammatory responses and activating endogenous healing pathways. Peptoid-based hydrogels, with superior enzymatic stability and tunable properties, offer a promising alternative but remain unexplored in neurodegenerative therapies. Thus, future study should focus on optimizing peptoid-based hydrogel formulations, which could considerably progress neuroregenerative therapies in neuroscience research.

肽基水凝胶刺激干细胞分化为神经元,提高神经保护,并通过调节炎症反应和激活内源性愈合途径帮助脊髓/脑损伤修复。肽基水凝胶具有优异的酶稳定性和可调特性,为神经退行性治疗提供了一个有希望的选择,但仍未被探索。因此,未来的研究应侧重于优化基于肽的水凝胶配方,这将大大推进神经科学研究中的神经再生治疗。
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引用次数: 0
Tanshinones target drug-resistant tuberculosis: efficacy, selectivity, and potential mechanism of action 丹参酮靶向耐药结核:疗效、选择性和潜在的作用机制。
IF 3.6 4区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-09-25 DOI: 10.1039/D5MD00637F
Giulia Polinário, Maiara A. B. C. Rosa, Débora L. Campos, Liliana L. S. Moraes, Marli M. A. de Campos, Ingrid Gracielle M. Silva, Karine B. Barros-Cordeiro, Sônia N. Báo and Fernando R. Pavan

This study evaluates the antimycobacterial potential of tanshinone I (TI), tanshinone IIA (TIIA), and cryptotanshinone (CPT), natural compounds isolated from Salvia miltiorrhiza, against Mycobacterium tuberculosis, the primary etiological agent of tuberculosis. Given the global challenge posed by antimicrobial resistance and the complexity of current treatment regimens, we aimed to identify effective and safe alternative therapies. The compounds' in vitro activity was initially assessed via minimum inhibitory concentration (MIC90) and cytotoxicity index (CI50) determinations, yielding MIC90 values of 1.03, 0.38, and 1.21 μg mL−1 for TI, TIIA, and CPT, respectively, with low toxicity and high selectivity indices. A narrow antimicrobial spectrum was observed upon testing against representative bacteria, fungi, and non-tuberculous mycobacteria (NTM). Combination assays with rifampicin revealed synergism for TI and indifference for TIIA and CPT, as determined by the fractional inhibitory concentration index (FICI). Scanning electron microscopy (SEM) revealed morphological alterations in the bacilli's cell wall, suggesting it as a possible target of the compounds' mechanism of action. Whole genome sequencing (WGS) of resistant strains identified mutations predominantly in PE_PGRS family genes, supporting the hypothesis that tanshinones modulate cell wall structure. Finally, efficacy was confirmed against multidrug-resistant clinical isolates, with MIC90 values near 1 μg mL−1. These findings position TI, TIIA, and CPT as promising candidates for developing new therapies against drug-resistant tuberculosis.

本研究评价了丹参酮I (TI)、丹参酮IIA (TIIA)和隐丹参酮(CPT)这三种从丹参中分离的天然化合物对结核分枝杆菌(结核的主要病原)的抑菌潜力。鉴于抗菌素耐药性带来的全球挑战和当前治疗方案的复杂性,我们的目标是确定有效和安全的替代疗法。通过最低抑制浓度(MIC90)和细胞毒性指数(CI50)测定初步评估化合物的体外活性,得到TI、TIIA和CPT的MIC90值分别为1.03、0.38和1.21 μ mL-1,具有低毒性和高选择性指标。在对代表性细菌、真菌和非结核分枝杆菌(NTM)的检测中观察到狭窄的抗菌谱。通过分数抑制浓度指数(FICI)测定,与利福平联合试验显示对TI有协同作用,对TIIA和CPT无影响。扫描电镜(SEM)显示了杆菌细胞壁的形态学改变,表明它可能是化合物作用机制的靶点。耐药菌株的全基因组测序(WGS)发现PE_PGRS家族基因主要发生突变,支持丹参酮调节细胞壁结构的假设。最后,对临床多药耐药菌株的疗效得到证实,MIC90值接近1 μg mL-1。这些发现使TI、TIIA和CPT成为开发耐药结核病新疗法的有希望的候选药物。
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引用次数: 0
Design and synthesis of enantiopure NHC–silver(i) and NHC–gold(i) complexes with anticancer, anti-inflammatory and antioxidant properties 具有抗癌、抗炎和抗氧化性能的对映纯nhc -银(i)和nhc -金(i)配合物的设计与合成。
IF 3.6 4区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-09-24 DOI: 10.1039/D5MD00651A
Domenico Iacopetta, Assunta D'Amato, Jessica Ceramella, Annaluisa Mariconda, Camillo Rosano, Maria Marra, Alessia Catalano, Pasquale Longo and Maria Stefania Sinicropi

So far, several interesting reports dealing with N-heterocyclic carbene (NHC) complexes bearing silver and gold have been published, highlighting their versatility in several research fields and their various applications as well. However, most of the reported NHC complexes have been synthetically obtained and studied as racemates, whereas less is still known about the properties of enantiopure complexes. Aiming at contributing to fill this gap, herein a new series of enantiopure NHC complexes of silver(I) and gold(I) bearing an imidazole derivative, opportunely substituted, with one or two asymmetric carbons has been synthesized. These complexes have been characterized by 1H and 13C NMR, mass spectrometry, and elemental analysis and studied for their anticancer, anti-inflammatory and antioxidant properties. The most active complex was also further investigated for its ability in modulating two main enzymes involved in cancer and inflammatory diseases, viz. human topoisomerase I (hTopoI) and murine inducible nitric oxide synthase (iNOS). The outcomes highlight the role of the configuration and substituents in the regulation of the above-mentioned targets, strengthening the need to widen the studies on enantiopure NHC complexes, which may represent useful compounds to be further developed for the obtaining of tailored therapeutic regimens.

到目前为止,关于含银和含金的n -杂环碳(NHC)配合物的一些有趣的报道已经发表,突出了它们在几个研究领域的通用性和它们的各种应用。然而,大多数报道的NHC配合物都是作为外消旋物合成和研究的,而对映不纯配合物的性质尚不清楚。为了填补这一空白,本文合成了一系列新的含咪唑衍生物的银(i)和金(i)的对映不纯NHC配合物,这些配合物被一个或两个不对称碳取代。这些配合物已通过1H和13C NMR,质谱和元素分析进行了表征,并研究了它们的抗癌,抗炎和抗氧化性能。最活跃的复合物还进一步研究了其调节与癌症和炎症疾病有关的两种主要酶的能力,即人类拓扑异构酶I (hTopoI)和小鼠诱导型一氧化氮合酶(iNOS)。这些结果强调了构型和取代基在上述靶点调控中的作用,加强了对映纯NHC配合物研究的必要性,这些对映纯NHC配合物可能代表着进一步开发的有用化合物,以获得量身定制的治疗方案。
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引用次数: 0
Discovery of RNA-binding fragments using biolayer interferometry 利用生物层干涉法发现rna结合片段。
IF 3.6 4区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-09-19 DOI: 10.1039/D5MD00673B
Vipul Navinchandra Panchal, Jan-Åke Husmann, Kaja Günther, Muhammad Zeeshan, Bengt Erik Haug and Ruth Brenk

Structured RNAs are increasingly explored as novel pharmacological targets for a range of diseases. Therefore, evaluating methods for RNA-focused hit discovery is crucial. Biolayer Interferometry (BLI), a label-free technique that detects biomolecular interactions by measuring changes in white light interference near the sensor surface, offers high throughput and multiplexing capabilities. While BLI has been widely adopted for protein-targeted screening, its application in RNA-targeted drug discovery remains largely unexplored. In this study, we demonstrate the effective use of BLI to investigate RNA–small molecule interactions using three different riboswitches, which are potential targets for novel antibiotics. Furthermore, we describe the successful use of BLI to identify fragment binders of these RNA targets. We combined the BLI experiments with ligand-based NMR as an orthogonal validation method and were able to identify seven competitive fragment binders of the flavin mononucleotide (FMN) riboswitch, each featuring scaffolds distinct from the previously known ligands.

结构rna作为一系列疾病的新药理学靶点被越来越多地探索。因此,评估以rna为重点的命中发现方法至关重要。生物层干涉法(BLI)是一种无标记技术,通过测量传感器表面附近白光干涉的变化来检测生物分子相互作用,具有高通量和多路复用能力。虽然BLI已被广泛用于蛋白质靶向筛选,但其在rna靶向药物发现中的应用仍未得到广泛探索。在这项研究中,我们证明了BLI有效地利用三种不同的核糖开关来研究rna -小分子相互作用,这是新型抗生素的潜在靶点。此外,我们描述了成功地使用BLI来鉴定这些RNA靶标的片段结合物。我们将BLI实验与基于配体的NMR作为正交验证方法相结合,并能够鉴定出黄素单核苷酸(FMN)核糖开关的七个竞争性片段结合物,每个都具有与先前已知配体不同的支架。
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引用次数: 0
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RSC medicinal chemistry
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