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Structure-activity relationship expansion and microsomal stability assessment of the 2-morpholinobenzoic acid scaffold as antiproliferative phosphatidylcholine-specific phospholipase C inhibitors. 抗增殖性磷脂酰胆碱特异性磷脂酶C抑制剂2- morpholinobzoic acid scaffold的构效关系扩展和微粒体稳定性评估。
IF 4.1 4区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-01-01 DOI: 10.1039/d4md00831f
Shaun W P Rees, Tayla A Rees, Emily K Paulin, Olivia R Arnerich, Euphemia Leung, Christopher S Walker, David Barker, Lisa I Pilkington

Dysregulation of choline phospholipid metabolism and overexpression of phosphatidylcholine-specific phospholipase C (PC-PLC) is implicated in various cancers. Current known enzyme inhibitors include compounds based on a 2-morpholino-5-N-benzylamino benzoic acid, or hydroxamic acid, scaffold. In this work, 81 compounds were made by modifying this core structure to explore the pharmacophore. Specifically, these novel compounds result from changes to the central ring substitution pattern, alkyl heterocycle and methylation of the N-benzyl bridge. The anti-proliferative activity of the synthesised compounds was assessed against cancer cell lines MDA-MB-231 and HCT116. PC-PLCBC enzyme inhibition was also assessed, and the development of a pharmacokinetic profile was initiated using a microsomal stability assay. The findings confirmed the optimal pharmacophore as a 2-morpholino-5-N-benzylamino benzoic acid, or acid derivative, scaffold, and that this family of molecules demonstrate a high degree of stability following treatment with rat microsomes. Additionally, benzylic N-methylated compounds were the most biologically active compounds, encouraging further investigation into this region of the pharmacophore.

胆碱磷脂代谢失调和磷脂酰胆碱特异性磷脂酶C (PC-PLC)的过度表达与多种癌症有关。目前已知的酶抑制剂包括基于2-morpholino-5- n -苄基苯甲酸或羟肟酸支架的化合物。本研究通过对该核心结构进行修饰,合成了81个药效团化合物。具体来说,这些新化合物是由中心环取代模式、烷基杂环和n -苄基桥甲基化的变化引起的。合成的化合物对肿瘤细胞株MDA-MB-231和HCT116的抗增殖活性进行了评价。还评估了PC-PLCBC酶抑制,并使用微粒体稳定性测定法开始了药代动力学谱的开发。研究结果证实,最佳药效团是2-morpholino-5-N-benzylamino苯甲酸,或酸衍生物,支架,并且该分子家族在大鼠微粒体处理后表现出高度的稳定性。此外,苯基n甲基化化合物是最具生物活性的化合物,鼓励进一步研究药效团的这一区域。
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引用次数: 0
Exploration of degrons and their ability to mediate targeted protein degradation.
IF 4.1 4区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-01-01 DOI: 10.1039/d4md00787e
Timothy J Harris, Darci J Trader

Degrons are short amino acid sequences that can facilitate the degradation of protein substrates. They can be classified as either ubiquitin-dependent or -independent based on their interactions with the ubiquitin proteasome system (UPS). These amino acid sequences are often found in exposed regions of proteins serving as either a tethering point for an interaction with an E3 ligase or initiating signaling for the direct degradation of the protein. Recent advancements in the protein degradation field have shown the therapeutic potential of both classes of degrons through leveraging their degradative effects to engage specific protein targets. This review explores what targeted protein degradation applications degrons can be used in and how they have inspired new degrader technology to target a wide variety of protein substrates.

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引用次数: 0
Peptide-based amyloid-beta aggregation inhibitors.
IF 4.1 4区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-12-31 DOI: 10.1039/d4md00729h
Naina Sehra, Rajesh Parmar, Rahul Jain

Aberrant protein misfolding and accumulation is considered to be a major pathological pillar of neurodegenerative disorders, including Alzheimer's and Parkinson's diseases. Aggregation of amyloid-β (Aβ) peptide leads to the formation of toxic amyloid fibrils and is associated with cognitive dysfunction and memory loss in Alzheimer's disease (AD). Designing molecules that inhibit amyloid aggregation seems to be a rational approach to AD drug development. Over the years, researchers have utilized a variety of therapeutic strategies targeting different pathways, extensively studying peptide-based approaches to understand AD pathology and demonstrate their efficacy against Aβ aggregation. This review highlights rationally designed peptide/mimetics, including structure-based peptides, metal-peptide chelators, stapled peptides, and peptide-based nanomaterials as potential amyloid inhibitors.

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引用次数: 0
Development of PROTACs targeting estrogen receptor: an emerging technique for combating endocrine resistance. 靶向雌激素受体的PROTACs的开发:对抗内分泌抵抗的新技术。
IF 4.1 4区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-12-30 DOI: 10.1039/d4md00961d
Rouming Peng, Xin Liu, Chun-Chi Chen, Rey-Ting Guo, Jian Min

Despite the success of endocrine therapies in treating ER-positive breast cancer, the development of resistance remains a significant challenge. Estrogen receptor targeting proteolysis-targeting chimeras (ER PROTACs) offer a unique approach by harnessing the ubiquitin-proteasome system to degrade ER, potentially bypassing resistance mechanisms. In this review, we present the drug design, efficacy and early clinical trials of these ER PROTACs. This review underscores the academic and industrial opportunities presented by this emerging technology, as well as the challenges that must be addressed to translate these findings into effective clinical therapies.

尽管内分泌疗法在治疗雌激素受体阳性乳腺癌方面取得了成功,但耐药性的发展仍然是一个重大挑战。雌激素受体靶向蛋白水解嵌合体(ER PROTACs)提供了一种独特的方法,利用泛素-蛋白酶体系统来降解ER,可能绕过耐药机制。在这篇综述中,我们介绍了这些ER protac的药物设计、疗效和早期临床试验。这篇综述强调了这一新兴技术所带来的学术和工业机遇,以及必须解决的挑战,将这些发现转化为有效的临床治疗。
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引用次数: 0
Discovery and biological evaluation of nitrofuranyl-pyrazolopyrimidine hybrid conjugates as potent antimicrobial agents targeting Staphylococcus aureus and methicillin-resistant S. aureus. 硝基呋喃基-吡唑嘧啶杂化偶联物对金黄色葡萄球菌和耐甲氧西林金黄色葡萄球菌的有效抗菌药物的发现和生物学评价。
IF 4.1 4区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-12-26 DOI: 10.1039/d4md00826j
Sapna Saini, G Lakshma Reddy, Anjali Gangwar, Harpreet Kour, Gajanan G Nadre, Ramajayan Pandian, Sunny Pal, Utpal Nandi, Rashmi Sharma, Sanghapal D Sawant

Nitrofuran and pyrazolopyrimidine-based compounds possess a broad antimicrobial spectrum including Gram-positive and Gram-negative bacteria. In the present work, a series of conjugates of these scaffolds was synthesized and evaluated for antimicrobial activity against Staphylococcus aureus and methicillin-resistant S. aureus (MRSA). Many compounds showed MIC values of ≤2 μg ml-1, with compound 35 demonstrating excellent activity (MICs: 0.7 and 0.15 μg ml-1 against S. aureus and MRSA, respectively) and safety up to 50 μg ml-1 in HepG2 cells. Compound 35 also exhibited no hemolytic activity, biofilm eradication, and effectiveness against efflux-pump-overexpressing strains (NorA, TetK, MsrA) without resistance development. It showed synergistic effects with vancomycin (S. aureus) and rifampicin (MRSA). Mechanistic studies revealed that compound 35 exhibits good membrane-targeting abilities, as evidenced by DAPI/PI staining and scanning electron microscopy (SEM). In an intracellular model, it reduced bacterial load efficiently in both S. aureus and MRSA strains. With a strong in vitro profile, compound 35 demonstrated favorable oral pharmacokinetics at 30 mg kg-1 and potent in vivo anti-MRSA activity, highlighting its potential against antibiotic-resistant infections.

硝基呋喃和吡唑嘧啶基化合物具有广泛的抗菌谱,包括革兰氏阳性和革兰氏阴性细菌。本研究合成了这些支架的一系列偶联物,并对其抗金黄色葡萄球菌和耐甲氧西林金黄色葡萄球菌(MRSA)的抗菌活性进行了评价。许多化合物的MIC值≤2 μg ml-1,其中化合物35对金黄色葡萄球菌和MRSA的MIC值分别为0.7和0.15 μg ml-1,对HepG2细胞的安全性高达50 μg ml-1。化合物35也没有溶血活性、生物膜根除和对外排泵过表达菌株(NorA、TetK、MsrA)的有效性,没有产生耐药性。与万古霉素(金黄色葡萄球菌)、利福平(MRSA)有协同作用。DAPI/PI染色和扫描电镜结果表明,化合物35具有良好的膜靶向能力。在细胞内模型中,它有效地减少了金黄色葡萄球菌和MRSA菌株的细菌负荷。在体外,化合物35在30mg kg-1时表现出良好的口服药代动力学和有效的体内抗mrsa活性,突出了其对抗抗生素耐药感染的潜力。
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引用次数: 0
Expanding the reaction toolbox for nanoscale direct-to-biology PROTAC synthesis and biological evaluation. 扩展纳米级直接生物合成和生物评价PROTAC的反应工具箱。
IF 4.1 4区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-12-23 DOI: 10.1039/d4md00760c
Rebecca Stevens, Harry J Shrives, Jenni Cryan, Diana Klimaszewska, Peter Stacey, Glenn A Burley, John D Harling, David J Battersby, Afjal H Miah

High-throughput chemistry (HTC) and direct-to-biology (D2B) platforms allow for plate-based compound synthesis and biological evaluation of crude mixtures in cellular assays. The rise of these workflows has rapidly accelerated drug-discovery programs in the field of targeted protein degradation (TPD) in recent years by removing a key bottleneck of compound purification. However, the number of chemical transformations amenable to this methodology remain minimal, leading to limitations in the exploration of chemical space using existing library-based approaches. In this work, we expanded the toolbox by synthesising a library of degraders in D2B format. First, reaction conditions are established for performing key medicinal chemistry transformations, including reductive amination, SNAr, palladium-mediated cross-coupling and alkylation, in D2B format. Second, the utility of these alternative reactions is demonstrated by rapidly identifying developable PROTACs for a range of protein targets.

高通量化学(HTC)和直接面向生物学(D2B)平台允许基于平板的化合物合成和细胞分析中粗混合物的生物学评价。近年来,这些工作流程的兴起通过消除化合物纯化的关键瓶颈,迅速加速了靶向蛋白降解(TPD)领域的药物发现项目。然而,适合这种方法的化学转化的数量仍然很少,导致使用现有的基于库的方法探索化学空间的限制。在这项工作中,我们通过合成D2B格式的降级器库来扩展工具箱。首先,以D2B格式建立关键药物化学转化的反应条件,包括还原胺化、SNAr、钯介导的交叉偶联和烷基化。其次,通过快速识别一系列蛋白质靶点的可开发PROTACs,证明了这些替代反应的实用性。
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引用次数: 0
Targeting host integrated stress response: lead discovery of flavonoid compounds active against coronaviruses PEDV and PDCoV. 靶向宿主综合应激反应:率先发现抗冠状病毒PEDV和PDCoV活性类黄酮化合物。
IF 4.1 4区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-12-23 DOI: 10.1039/d4md00846d
Liang Yi, Yishuai Wang, Jiehuang Wang, Yihan Chen, Weixue Huang, Ying Liao, Qingwen Zhang

Viral infections trigger the integrated stress response (ISR) in eukaryotic cells that leads to the activation of eIF2α kinases, the elevation of eukaryotic translation initiation factor 2α (eIF2α) phosphorylation, and thereby the shutdown of global protein synthesis that viruses rely on to replicate. Coronaviruses and other viruses have evolved various subversion mechanisms to counteract the antiviral ISR. These intricate host-virus interactions may be exploited by pharmacologically activating the host ISR for the development of host-directed antivirals (HDAs), an increasingly relevant area of research. In this study, we have discovered a new class of flavonoid-based ISR activators that exhibit potent antiviral activity against porcine epidemic diarrhea virus (PEDV) and porcine deltacoronavirus (PDCoV). PEDV and PDCoV are animal coronaviruses of great veterinary and economic importance, for which there are currently no effective therapeutics. The mechanistic study indicated that lead compounds 1-B and 1-C inhibit PEDV and PDCoV replication via upregulating eIF2α phosphorylation and thereby downregulating global protein synthesis in host cells, suggesting they are HDA antivirals.

病毒感染触发真核细胞的综合应激反应(ISR),导致eIF2α激酶激活,真核翻译起始因子2α (eIF2α)磷酸化升高,从而关闭病毒复制所依赖的全局蛋白质合成。冠状病毒和其他病毒已经进化出各种颠覆机制来对抗抗病毒的ISR。这些复杂的宿主-病毒相互作用可以通过药理学激活宿主ISR来开发宿主定向抗病毒药物(HDAs),这是一个日益相关的研究领域。在这项研究中,我们发现了一类新的基于黄酮类化合物的ISR激活剂,它们对猪流行性腹泻病毒(PEDV)和猪冠状病毒(PDCoV)具有强抗病毒活性。PEDV和PDCoV是具有重大兽医和经济意义的动物冠状病毒,目前尚无有效的治疗方法。机制研究表明,先导化合物1-B和1-C通过上调eIF2α磷酸化,从而下调宿主细胞中全局蛋白的合成,从而抑制PEDV和PDCoV的复制,提示它们是HDA抗病毒药物。
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引用次数: 0
Design and synthesis of cyclic lipidated peptides derived from the C-terminus of Cx43 for hemichannel inhibition and cardiac endothelium targeting. 从Cx43的c端衍生的用于半通道抑制和心脏内皮靶向的环状脂化肽的设计和合成。
IF 4.1 4区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-12-21 DOI: 10.1039/d4md00850b
Debora Iaculli, Jade Montgomery, Arthur Lamouroux, Anne Caufriez, Rafael Gozalbes, Mathieu Vinken, Filippo Molica, Brenda R Kwak, Steven Ballet

A peptide segment that is 10 residues long at the C-terminal (CT) region of Cx43 is known to be involved in interactions, both with the Cx43 protein itself and with other proteins, that result in hemichannel (HC) activity regulation. Previously reported mimetic peptides based on this region (e.g., αCT1, CT10) have been revealed to be promising therapeutic agents in the context of cardiovascular diseases. In this work, novel approaches, such as C- and N-terminal modification and cyclization, to improve the proteolytic stability and bioavailability of the CT10 peptide are presented. These efforts resulted in a set of unprecedented potent cyclic inhibitors of HC-mediated ATP release with a half-life largely exceeding 24 hours. Additionally, the introduction of a lipophilic moiety with different solubilizing linkers led to the generation of a novel series of water-soluble and lipidated peptides that exhibited high inhibitory capacity in in vitro assays at submicromolar concentrations. A cardiac endothelium targeting strategy was also adopted, exploiting the ability of the CRPPR peptide to selectively deliver the peptides to endothelial cells.

在Cx43的c端(CT)区域有一个长达10个残基的肽段,已知与Cx43蛋白本身和其他蛋白相互作用,导致半通道(HC)活性调节。先前报道的基于该区域的模拟肽(例如αCT1, CT10)已被发现是心血管疾病中有希望的治疗药物。在这项工作中,提出了新的方法,如C端和n端修饰和环化,以提高CT10肽的蛋白水解稳定性和生物利用度。这些努力产生了一组前所未有的有效的hc介导的ATP释放环抑制剂,其半衰期大大超过24小时。此外,引入具有不同增溶连接体的亲脂性片段导致产生一系列新的水溶性和脂化肽,这些肽在亚微摩尔浓度的体外实验中表现出高抑制能力。还采用了心脏内皮靶向策略,利用CRPPR肽选择性地将肽递送到内皮细胞的能力。
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引用次数: 0
Dual EGFR and telomerase inhibitory potential of new triazole tethered Schiff bases endowed with apoptosis: design, synthesis, and biological assessments. 新的三唑系席夫碱具有细胞凋亡的双重EGFR和端粒酶抑制潜力:设计、合成和生物学评估。
IF 4.1 4区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-12-19 DOI: 10.1039/d4md00750f
Mohamed A Zeidan, Heba F Ashour, Asmaa S A Yassen, Ayman Abo Elmaaty, Ayman B Farag, Marwa Sharaky, Abdullah Yahya Abdullah Alzahrani, Mohammed H Al Mughram, Ahmed A Al-Karmalawy

Many cancers have displayed resistance to chemotherapeutic drugs over the past few decades. EGFR has emerged as a leading target for cancer therapy via inhibiting tumor angiogenesis. Besides, studies strongly suggest that blocking telomerase activity could be an effective way to control the growth of certain cancer cells. Based on the fact that multi-target design rationale can afford candidates with greater treatment effectiveness. Besides, it was evidenced that inhibition of human telomerase enhances the effect of some tyrosine kinase inhibitors. So, in the current work, we aimed to design and synthesize novel 1,2,3-triazole-tethered Schiff bases (5a-l) to act as dual EGFR and telomerase inhibitors. Growth inhibition (GI)% was conducted for the synthesized compounds using a panel of eleven cancer cell lines as well as two normal cell lines. Interestingly, compound 5e displayed the highest mean GI% (76.78%) among the investigated compounds surpassing the mean GI% of the reference drug doxorubicin (65.79%). In addition, compound 5g displayed notably the lowest IC50 values (13.31, 13.31, 12.62, and 31.19 μM) for the four utilized cancer cell lines HNO97, HCT116, A375, and HEPG2, respectively. Interestingly, the investigated compounds exhibited significant inhibitory potential to EGFR and telomerase protein expression; in particular, compound 5g recorded inhibitory potentials of 3.45 and 1.31 ng mL-1, respectively. Hence, protein expression of the apoptosis-related proteins was carried out for compound 5g. Pro-apoptotic proteins (caspases 3, 8, and 9) were upregulated by 1.35, 1.55, and 1.51-fold change, respectively. Meanwhile, the anti-apoptotic proteins (CDK-2, CDK-4, and CDK-6) were downregulated by 2.91, 2.01, and 9.15-fold change, respectively, ensuring the apoptotic potential of compound 5g. Accordingly, compound 5g was selected for further investigation of its effects on cell cycle progression in A375 cancer cells. Obviously, compound 5g prompted cell cycle arrest at the G0-G1 phase. Additionally, the investigated compounds showed eligible pharmacokinetic profiles with feasible oral bioavailability. Consequently, the synthesized compounds can be treated as lead multi-target anticancer ligands for future optimization.

在过去的几十年里,许多癌症都表现出对化疗药物的耐药性。通过抑制肿瘤血管生成,EGFR已成为癌症治疗的主要靶点。此外,研究强烈表明,阻断端粒酶活性可能是控制某些癌细胞生长的有效方法。基于多靶点设计原理,可以为候选药物提供更大的治疗效果。此外,有证据表明,抑制人类端粒酶可增强某些酪氨酸激酶抑制剂的作用。因此,在目前的工作中,我们旨在设计和合成新的1,2,3-三唑系结希夫碱(5a-l),作为EGFR和端粒酶的双重抑制剂。用11个癌细胞系和2个正常细胞系对合成的化合物进行了生长抑制(GI)%。有趣的是,化合物5e的平均GI%最高(76.78%),超过参比药阿霉素的平均GI%(65.79%)。此外,化合物5g对HNO97、HCT116、A375和HEPG2的IC50值最低,分别为13.31、13.31、12.62和31.19 μM。有趣的是,所研究的化合物对EGFR和端粒酶蛋白表达表现出显著的抑制潜力;其中,化合物5g的抑制电位分别为3.45和1.31 ng mL-1。因此,我们对化合物5g进行了凋亡相关蛋白的蛋白表达。促凋亡蛋白(caspases 3、8和9)分别上调1.35倍、1.55倍和1.51倍。同时,抗凋亡蛋白CDK-2、CDK-4和CDK-6分别下调2.91倍、2.01倍和9.15倍,保证了化合物5g的凋亡潜能。因此,选择化合物5g进一步研究其对A375癌细胞细胞周期进程的影响。显然,化合物5g使细胞周期阻滞在G0-G1期。此外,所研究的化合物具有合适的药代动力学特征和可行的口服生物利用度。因此,合成的化合物可以作为未来优化的先导多靶点抗癌配体。
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引用次数: 0
Distinctive roles of aquaporins and novel therapeutic opportunities against cancer 水通道蛋白的独特作用和抗癌的新治疗机会。
IF 4.1 4区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-12-17 DOI: 10.1039/D4MD00786G
Dharmendra Kumar Yadav, Desh Deepak Singh and Dongyun Shin

Aquaporins (AQPs) are integral membrane proteins responsible for facilitating the transmembrane transport of water and small solutes. Their involvement in diverse physiological functions extends to pathological conditions, including cancer, positioning them as promising targets for anticancer therapy. Tumor cells, particularly those with high metastatic potential, exhibit elevated AQP expression, reinforcing their critical role in tumor biology. Emerging evidence highlights AQPs' involvement in key oncogenic processes such as cell migration, proliferation, and tumor-associated edema, suggesting their potential as novel therapeutic targets. Despite this, the development of selective and potent AQP inhibitors has proven challenging. Efforts to produce small-molecule AQP inhibitors have largely been unsuccessful. However, recent advancements include monoclonal human IgG antibodies targeting extracellular domains of aquaporin-4, offering new therapeutic strategies, particularly in glioblastoma, where AQP-4 is overexpressed. However, recent advancements include monoclonal human IgG antibodies targeting extracellular domains of aquaporin-4, offering new therapeutic strategies, particularly in glioblastoma, where AQP-4 is over expressed. These antibodies hold promise for selectively targeting and eradicating AQP-4-expressing cells in malignant brain tumors. This review discusses the critical role AQPs play in cancer, including their contributions to tumor cell proliferation, migration, angiogenesis, and edema formation. Additionally, we explore innovative therapeutic approaches, such as antibody-based interventions, and outline potential future research directions in AQP-targeted cancer therapies.

水通道蛋白(AQPs)是一种完整的膜蛋白,负责促进水和小溶质的跨膜运输。它们参与多种生理功能延伸到病理条件,包括癌症,使它们成为抗癌治疗的有希望的靶点。肿瘤细胞,特别是具有高转移潜力的肿瘤细胞,表现出AQP表达升高,加强了其在肿瘤生物学中的关键作用。新出现的证据表明AQPs参与关键的致癌过程,如细胞迁移、增殖和肿瘤相关水肿,这表明它们有潜力成为新的治疗靶点。尽管如此,选择性和有效的AQP抑制剂的开发已被证明具有挑战性。生产小分子AQP抑制剂的努力基本上是不成功的。然而,最近的进展包括针对水通道蛋白-4细胞外结构域的单克隆人IgG抗体,提供了新的治疗策略,特别是在AQP-4过表达的胶质母细胞瘤中。然而,最近的进展包括针对水通道蛋白-4细胞外结构域的单克隆人IgG抗体,提供了新的治疗策略,特别是在AQP-4过表达的胶质母细胞瘤中。这些抗体有望选择性地靶向和根除恶性脑肿瘤中表达aqp -4的细胞。本文综述了AQPs在癌症中的关键作用,包括它们对肿瘤细胞增殖、迁移、血管生成和水肿形成的贡献。此外,我们探索了创新的治疗方法,如基于抗体的干预,并概述了aqp靶向癌症治疗的潜在未来研究方向。
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