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A newly discovered bacterial symbiont in the aphid microbiome identified through 16S rRNA sequencing 通过 16S rRNA 测序鉴定蚜虫微生物群中新发现的细菌共生体
IF 2.5 3区 生物学 Q3 MICROBIOLOGY Pub Date : 2024-06-27 DOI: 10.1007/s13199-024-01000-7
Francisca Zepeda-Paulo, Violeta Romero, Juan Luis Celis-Diez, Blas Lavandero

Microbiome insect research has grown rapidly over the last years thanks to advances in next-generation sequencing. The bacterial microbiome inhabiting insects often involves mutualistic associations between the insect hosts and maternally transmitted symbiotic bacteria. Among insect groups, aphids are the most studied regarding insect symbiosis, but with a strong bias toward a few well studied species. Increased resistance to parasitic wasps, entomopathogenic fungi and tolerance to thermal stresses are the most common facultative endosymbiont-mediated effects in aphid biology. Here, we studied the microbiome of the woolly apple aphid Eriosoma lanigerum, a severe pest of apple orchards, which has been poorly studied concerning facultative symbionts. Our 16S rRNA gene Illumina sequencing-based taxonomic assignment, showed a high representation of reads assigned (99% similarity) to a recently recognized bacterial taxon, not previously described in aphids, identified as Symbiopectobacterium purcellii. This bacterial endosymbiont has been recognized as a new clade of Enterobacteriaceae, vertically transmitted and mutualistic in various invertebrate hosts, including one nematode species and four insect species from the order Hemiptera. This finding emphasizes the need to extend the study of symbionts from entire microbiomes of insect hosts, to understand the diversity of endosymbionts across host species and their role in insect ecology.

得益于新一代测序技术的进步,昆虫微生物组的研究在过去几年中发展迅速。栖息在昆虫体内的细菌微生物组通常涉及昆虫宿主与母体传播的共生细菌之间的互生关系。在昆虫类群中,对蚜虫共生关系的研究最多,但主要偏重于少数几个研究较好的物种。对寄生蜂、昆虫病原真菌的抗性增强以及对热应力的耐受性提高是蚜虫生物学中最常见的面生内共生体介导的效应。在这里,我们研究了苹果园的一种严重害虫羊毛苹果蚜(Eriosoma lanigerum)的微生物组。我们基于 16S rRNA 基因的 Illumina 测序进行了分类鉴定,结果表明有大量读数(99% 的相似度)归属于一个新近被确认的细菌类群,该类群以前未在蚜虫中被描述过,被鉴定为 Symbiopectobacterium purcellii。这种细菌内共生体被认为是肠杆菌科的一个新支系,在各种无脊椎动物宿主(包括一种线虫和四种半翅目昆虫)中垂直传播和互生。这一发现强调了从昆虫宿主的整个微生物组中扩展共生体研究的必要性,以了解不同宿主物种中内生共生体的多样性及其在昆虫生态学中的作用。
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引用次数: 0
In vitro antagonistic activity of Bacillus spp. and Pseudomonas putida M5 isolated from feces of the violet-crowned hummingbird (Ramosomyia violiceps) from an urban environment 从城市环境中的紫冠蜂鸟(Ramosomyia violiceps)粪便中分离出的芽孢杆菌属和假单胞菌M5的体外拮抗活性
IF 2.5 3区 生物学 Q3 MICROBIOLOGY Pub Date : 2024-06-26 DOI: 10.1007/s13199-024-00998-0
Lizeth N. Raygoza-Alcantar, Leopoldo Díaz-Pérez, Verónica C. Rosas-Espinoza, Carla V. Sánchez-Hernández, Joicye Hérnandez-Zulueta, Flor Rodríguez-Gómez, Fabián A. Rodríguez-Zaragoza

The gut microbiome of wild birds contributes to host fitness by supporting nutrient absorption, toxin processing, and immune function. It also fights bacterial pathogens through competitive exclusion and the production of antimicrobial metabolites. This study analyzed the in vitro antagonistic activity of bacteria isolated from the feces of the violet-crowned hummingbird (Ramsomyia violiceps) against strains of Bacillus spp., Escherichia coli, Salmonella enterica, and Acinetobacter baumannii. Mist nets were placed in three parks within the Guadalajara Metropolitan Area. Fecal samples were collected from captured R. violiceps and inoculated into culture media. Bacteria exhibiting antagonist activity were identified using molecular techniques that targeted the V1-V9 region of the 16S rRNA gene. The gut strains Bacillus sp. 1, Bacillus sp. 2, B. altitudinis, B. thuringiensis, and B. subtilis exhibited antagonistic activity against Bacillus cereus, B. tequilensis, and A. baumannii. Pseudomonas putida M5 antagonized Bacillus spp., E. coli, S. enterica, and A. baumannii. This result indicates that some Bacillus spp. and Pseudomonas spp. in the cultivable bacterial assembly of the gut of R. violiceps produce secondary metabolites that can inhibit the growth of both Gram-positive and Gram-negative strains. Since diet plays a determining role in the gut bacterial assemblage of birds, our results suggest that the strains that showed antagonistic activity in vitro could be related to the nectar consumed by the hummingbird. This may help promote the synthesis of antimicrobial compounds as a resistance mechanism.

野生鸟类的肠道微生物群通过支持营养吸收、毒素处理和免疫功能来促进宿主的健康。它还通过竞争性排斥和产生抗菌代谢物来对抗细菌病原体。本研究分析了从紫冠蜂鸟(Ramsomyia violiceps)粪便中分离的细菌对巴氏杆菌属、大肠杆菌、肠炎沙门氏菌和鲍曼不动杆菌的体外拮抗活性。在瓜达拉哈拉大都会区的三个公园中放置了雾网。从捕获的小浣熊身上采集粪便样本并接种到培养基中。利用针对 16S rRNA 基因 V1-V9 区域的分子技术,确定了具有拮抗剂活性的细菌。肠道菌株 Bacillus sp. 1、Bacillus sp. 2、B. altitudinis、B. thuringiensis 和 B. subtilis 对蜡样芽孢杆菌、B. tequilensis 和鲍曼不动杆菌具有拮抗活性。假单胞菌 M5 可拮抗蜡样芽孢杆菌、大肠杆菌、肠杆菌和鲍曼不动杆菌。这一结果表明,暴头蟾蜍肠道可培养细菌群中的一些芽孢杆菌属和假单胞菌属产生的次级代谢产物可抑制革兰氏阳性和革兰氏阴性菌株的生长。由于饮食对鸟类肠道细菌群起着决定性作用,我们的研究结果表明,在体外表现出拮抗活性的菌株可能与蜂鸟食用的花蜜有关。这可能有助于促进抗菌化合物的合成,成为一种抵抗机制。
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引用次数: 0
Aphid adaptation in a changing environment through their bacterial endosymbionts: an overview, including a new major cereal pest (Rhopalosiphum maidis (Fitch) scenario 蚜虫通过细菌内共生体适应不断变化的环境:概述,包括一种新的主要谷物害虫(Rhopalosiphum maidis (Fitch)情景
IF 2.5 3区 生物学 Q3 MICROBIOLOGY Pub Date : 2024-06-25 DOI: 10.1007/s13199-024-00999-z
Artúr Botond Csorba, Sorina Dinescu, Gratiela Gradisteanu Pircalabioru, Ciprian G. Fora, János Bálint, Hugh D. Loxdale, Adalbert Balog

Aphids (Hemiptera: Aphididae) are small, phloem-feeding insects that exhibit remarkable adaptability and resilience to various environmental conditions, including heat stress. Recent research has shed light on the role of bacterial symbionts in influencing the heat tolerance of aphids. Additionally, an intriguing avenue of investigation has explored how aphids can acquire bacterial symbionts through a unique mechanism involving soil nematodes. In this paper, we provide an in-depth overview of the interplay between heat stress, bacterial symbionts, and soil nematodes in the context of aphid biology. In reviewing the existing literature and collating available knowledge, we highlight the mechanisms by which bacterial symbionts contribute to aphid heat stress tolerance and examine the symbiont acquisition process facilitated by soil nematodes. Furthermore, we discuss the implications of these symbiotic associations in relation to the ecology, evolution, and agricultural management of a major globally expanding pest aphid, the corn leaf aphid, Rhopalosiphum maidis (Fitch). Overall, it may be concluded that both primary and secondary bacterial endosymbionts play a significant role in aphid biology with evolutionary consequences. These include adaptations through bacterial symbionts in terms of longevity and fecundity, heat shock tolerance, and resistance to fungal pathogens and primary hymenopterous wasp parasitoids.

蚜虫(半翅目:蚜科)是一种以韧皮部为食的小型昆虫,对包括热胁迫在内的各种环境条件具有极强的适应性和复原力。最近的研究揭示了细菌共生体在影响蚜虫耐热性方面的作用。此外,一个有趣的研究方向是探索蚜虫如何通过一种涉及土壤线虫的独特机制获得细菌共生体。在本文中,我们将从蚜虫生物学的角度深入概述热胁迫、细菌共生体和土壤线虫之间的相互作用。通过回顾现有文献和整理现有知识,我们强调了细菌共生体对蚜虫热胁迫耐受性的贡献机制,并研究了土壤线虫促进共生体获取的过程。此外,我们还讨论了这些共生关系对全球主要害虫蚜虫--玉米叶蚜 Rhopalosiphum maidis (Fitch) 的生态学、进化和农业管理的影响。总之,可以得出这样的结论:初级和次级细菌内共生体在蚜虫生物学中发挥着重要作用,并带来进化后果。这包括通过细菌共生体在寿命和繁殖力、热休克耐受性以及对真菌病原体和主要膜翅目黄蜂寄生虫的抗性等方面的适应性。
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引用次数: 0
Improved micropropagation and hardening responses in red pepper by ACC deaminase producing Methylobacterium oryzae CBMB20 利用产生 ACC 脱氨酶的 Methylobacterium oryzae CBMB20 改善红辣椒的微繁殖和硬化反应
IF 2.5 3区 生物学 Q3 MICROBIOLOGY Pub Date : 2024-06-25 DOI: 10.1007/s13199-024-00997-1
Abitha Benson, Manoharan Melvin Joe, Sa Tongmin

The effect of plant growth regulators and Methylobacterium oryzae CBMB20 treatment on the growth and stress responses of red pepper was evaluated under in vitro and green house conditions. The highest increase (50%) in wet weight of 1279.2 mg explant− 1 and dry weight of 37.9 mg explant− 1 was observed with the combination of 6-Benzylaminopurine (BAP) and Indole-3-butyric acid (IBA) treatment. Among the different combinations tested, BAP + 2,4-Dichlorophenoxyacetic acid (2,4-D) treatment showed the highest number of shoots per explant, shoot length, and rooting response. The combination of CBMB20 (M. oryzae CBMB20) and IBA recorded the highest rooting response in red pepper plants. Colonization in xylem vessels by CBMB20 in red pepper plants can be observed based on the electron microscopic photographs. CBMB20-treated red pepper plants recorded less Malondialdehyde (MDA) content (30–43%), less proline content (52 − 43%), and less electrolyte leakage (38–72%), when compared to plants devoid of CBMB20 treatment. CBMB20 inoculated plants recorded less ethylene emission of 27–57%, 1-aminocyclopropane-1-carboxylic acid (ACC) content of 43–47%, and 1-Aminocyclopropane-1-carboxylic acid oxidase (ACO) activity of 23–25% were recorded in micropropagated plants inoculated with CBMB20 compared to the plants without inoculation. CBMB20-treated red pepper plants recorded a higher survivability of 11–18%, when compared to plants without CBMB20 inoculation. CBMB20 treated micropropagated-red-pepper plants showed a 28–30% increase in plant dry weight compared to micropropagated plants with CBMB20 inoculation.

在离体和温室条件下,评估了植物生长调节剂和Methylobacterium oryzae CBMB20处理对红辣椒生长和胁迫反应的影响。在 6-苄基氨基嘌呤(BAP)和吲哚-3-丁酸(IBA)的组合处理下,红辣椒的湿重和干重分别增加了 1279.2 毫克(50%)和 37.9 毫克(50%)。在测试的不同组合中,BAP + 2,4-二氯苯氧乙酸(2,4-D)处理的每个外植体的芽数、芽长和生根反应最高。在红辣椒植株中,CBMB20(M. oryzae CBMB20)和 IBA 的组合生根反应最高。根据电子显微镜照片可以观察到 CBMB20 在红辣椒植株木质部血管中的定殖。与没有经过 CBMB20 处理的植株相比,经过 CBMB20 处理的红辣椒植株丙二醛(MDA)含量(30-43%)、脯氨酸含量(52-43%)和电解质渗漏(38-72%)都较低。与未接种 CBMB20 的植株相比,接种了 CBMB20 的微繁殖植株乙烯释放量减少了 27-57%,1-氨基环丙烷-1-羧酸(ACC)含量减少了 43-47%,1-氨基环丙烷-1-羧酸氧化酶(ACO)活性减少了 23-25%。与未接种 CBMB20 的植株相比,接种了 CBMB20 的红辣椒植株存活率更高,达 11-18%。与接种 CBMB20 的微繁殖植株相比,接种 CBMB20 的微繁殖红辣椒植株的干重增加了 28-30%。
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引用次数: 0
Microbiome origin and stress-related changes in bacterial abundance of the photosymbiotic sea slug Berghia stephanieae (Á. Valdés, 2005) 光合共生海蛞蝓 Berghia stephanieae 的微生物组起源和与压力有关的细菌丰度变化(Á. Valdés, 2005 年)
IF 2.5 3区 生物学 Q3 MICROBIOLOGY Pub Date : 2024-06-14 DOI: 10.1007/s13199-024-00995-3
C. Sickinger, Sofie Marie Brackwehr, Jenny Melo Clavijo, Gilles Gasperoni, Sascha Tierling, Angelika Preisfeld, Gregor Christa
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引用次数: 0
Multi-omics tools for understanding Trichoderma-plant symbiosis: biotechnological developments and future directions 了解毛霉与植物共生的多组学工具:生物技术发展与未来方向
IF 2.5 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2024-05-28 DOI: 10.1007/s13199-024-00996-2
Nur Syafikah Abdullah, Febri Doni, Muhammad Adil Awal, Muhamad Shakirin Mispan, Mohd Zuwairi Saiman, Yusmin Mohd-Yusuf, Nurul Shamsinah Mohd Suhaimi

In the era where food security is one of the challenges caused by global food demand, understanding the strategies needed is a must. Chemical fertilizers and synthetic pesticides have been used over decades to increase crop production. This practise however causes detrimental effects to human and environment in the long run. To replace the dependency on chemical fertilizer, usage of a sustainable microbe-based fertilizer has become a recent focus. Trichoderma, a plant growth-promoting fungi have been reported to promote plant growth and development in wide variety of crops. This fungus is able to enhance plant growth performance and indirectly protecting plants from phytopathogens and abiotic stresses through the induction of plant defence systems. The ability of this genus to confer beneficial effects lie in the complex fungal-plant interactions. Multi-omics, a molecular technology offers great potential to be used in providing detailed understanding on how Trichoderma interacts with the host plants vice versa. Although the knowledge of the actual mechanisms is still lacking, many studies have been conducted following the current multi-omics biotechnological advancements. This article reviews current findings on the biochemical and molecular mechanisms involved during Trichoderma and host plant interaction using multi-omics approaches. This will act as a reference for future studies that focus on the integration of different omics technologies.

在粮食安全成为全球粮食需求挑战之一的时代,了解所需的战略是必须的。几十年来,人们一直使用化肥和合成杀虫剂来提高作物产量。然而,从长远来看,这种做法会对人类和环境造成有害影响。为了取代对化肥的依赖,使用可持续的微生物肥料已成为近期的焦点。据报道,毛霉菌是一种促进植物生长的真菌,能促进多种作物的生长和发育。这种真菌能够提高植物的生长性能,并通过诱导植物防御系统间接保护植物免受植物病原体和非生物胁迫。该真菌属之所以能产生有益的影响,在于真菌与植物之间复杂的相互作用。多组学这一分子技术具有巨大的潜力,可用于详细了解毛霉菌如何与寄主植物相互作用,反之亦然。虽然对实际机制的了解还很缺乏,但随着当前多组学生物技术的发展,已经开展了许多研究。本文回顾了目前利用多组学方法研究毛霉与寄主植物相互作用过程中涉及的生化和分子机制的发现。这将为今后侧重于整合不同组学技术的研究提供参考。
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引用次数: 0
Sponge-associated microbes in the twilight zone of Curaçao 库拉索岛黄昏地带的海绵相关微生物
IF 2.5 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2024-05-24 DOI: 10.1007/s13199-024-00992-6
D. Cleary, D. J. van Bendegom, N. Gomes, N. J. de Voogd
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引用次数: 0
Ecological dynamics of Arbuscular Mycorrhizal Fungi in wetland and aerobic rice ecosystem under subtropical humid climatic conditions in Eastern India 印度东部亚热带湿润气候条件下湿地和好氧水稻生态系统中的丛枝菌根真菌生态动态
IF 2.5 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2024-05-23 DOI: 10.1007/s13199-024-00993-5
A. Senapati, P. Panneerselvam, Parameswaran Chidambaranathan, Amaresh Kumar Nayak, Debasis Mitra, Chinmay Pradhan, A. Anandan
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引用次数: 0
Mycorrhizal fungi increase plant nutrient uptake, aggregate stability and microbial biomass in the clay soil 菌根真菌能增加粘土中植物的养分吸收、聚合稳定性和微生物生物量
IF 2.5 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2024-05-06 DOI: 10.1007/s13199-024-00994-4
Shova Akter, Md. Kamruzzaman, Md. Piash Sarder, Md. Sadiqul Amin, Jagadish Chandra Joardar, Md. Sanaul Islam, Sonia Nasrin, Mahbub Ul Islam, Faridul Islam, Sheikh Rabbi, Milton Halder

Arbuscular mycorrhizal fungi (AMF) are beneficial soil organisms that can form symbiotic associations with the host plant roots. Mycorrhizal symbiosis between plant root and fungi can influence plant diversity and ecosystem productivity. However, the impacts of AMF frequently documented in the loamy to sandy soil, whereas it has no precise mechanism of influencing plant productivity, macronutrient uptake, and aggregation in a clay soil. A pot experiment was carried out to investigate the impact of AMF on plant growth, nutrient uptake and soil aggregation in a clay soil of Bangladesh. Okra (Abelmoschus esculentus L.) was cultivated over 105 days with AMF and without AMF (NAMF) with 5 replications. Plant productivity, nutrient uptake, soil organic carbon (SOC), microbial biomass carbon (MBC), aggregate stability (MWD), and glomalin-related soil protein (GRSP) were measured after 105 days. Results showed that the plant productivity and nutrient availability in soil and their subsequent uptake in AMF were significantly higher compared to the NAMF treatment (p < 0.01). We observed 17% increase in aggregate stability (measured as mean weight diameter) and 28% increase in organic carbon in AMF inoculated soil compared to NAMF. The microbial biomass carbon and GRSP were significantly higher in the AMF than NAMF treatment (p < 0.01). The findings highlight that AMF introduction can be a promising tool for improving plant production and soil condition in the clay soil instead of conventional farming system.

丛枝菌根真菌(AMF)是一种有益的土壤生物,可与寄主植物根系形成共生关系。植物根系与真菌之间的菌根共生关系可影响植物多样性和生态系统的生产力。然而,AMF 对壤土和沙质土壤的影响经常被记录在案,而它对粘质土壤中的植物生产力、常量养分吸收和聚合作用却没有确切的影响机制。为了研究 AMF 对孟加拉国粘土中植物生长、养分吸收和土壤团聚的影响,我们进行了一项盆栽实验。对秋葵(Abelmoschus esculentus L.)进行了为期 105 天的栽培,其中有 5 次重复施用 AMF,也有 5 次重复不施用 AMF(NAMF)。105 天后,对植物生产力、养分吸收、土壤有机碳(SOC)、微生物生物量碳(MBC)、团聚稳定性(MWD)和谷胱甘肽相关土壤蛋白质(GRSP)进行了测定。结果表明,与 NAMF 处理相比,AMF 处理的植物生产力和土壤中的养分供应量及其随后的吸收量均显著提高(p < 0.01)。我们观察到,与 NAMF 相比,AMF 接种土壤中的团聚体稳定性(以平均重量直径衡量)增加了 17%,有机碳增加了 28%。在 AMF 处理中,微生物生物量碳和 GRSP 明显高于 NAMF 处理(p < 0.01)。研究结果表明,与传统耕作制度相比,AMF 的引入可成为提高粘质土壤中植物产量和改善土壤条件的有效工具。
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引用次数: 0
The partnerships between hermit crabs and sea anemones: an overview 寄居蟹与海葵之间的伙伴关系:概述
IF 2.5 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2024-04-27 DOI: 10.1007/s13199-024-00991-7
Ilan Karplus

The hermit crab-sea anemone (HCA) partnership is a common facultative mutualism. The anemone protects its host from predators such as cephalopods and shell crushing crabs by its stinging cells. The crab provides the anemone with a hard substrate and increased access to oxygenated water and food and in some cases with protection from predators. These partnerships are extremely diverse and complex. This overview addresses issues related to formation of the associations, the early history of these partnerships, placement of anemones on the hermit crab shell, intra and interspecific competition amongst hermit crabs over sea anemones, costs and benefits for crab and anemone from being associated and the evolution of these partnerships based on molecular phylogenies using nuclear and mitochondrial markers.

寄居蟹-海葵(HCA)伙伴关系是一种常见的互生关系。海葵通过刺细胞保护宿主免受头足类和碎壳蟹等捕食者的伤害。螃蟹则为海葵提供坚硬的底质,增加其获得含氧水和食物的机会,在某些情况下还能保护海葵免受捕食者的伤害。这些伙伴关系极其多样和复杂。本综述探讨了与这些伙伴关系的形成、这些伙伴关系的早期历史、海葵在寄居蟹壳上的位置、寄居蟹之间对海葵的种内和种间竞争、蟹和海葵建立伙伴关系的成本和收益,以及基于使用核和线粒体标记的分子系统进化的这些伙伴关系的进化。
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引用次数: 0
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Symbiosis
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