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In situ environmental conditions and molecular identification of the photosymbiotic marine worm Symsagittifera roscoffensis 光合共生海洋蠕虫 Symsagittifera roscoffensis 的原位环境条件和分子鉴定
IF 2.5 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-12-11 DOI: 10.1007/s13199-023-00964-2
Nathan J. Thomas, Kam W. Tang, Christopher J. Coates

Known as the Roscoff worm or mint-sauce worm, Symsagittifera roscoffensis is an Acoel distinguishable due to the presence of symbiotic alga Tetraselmis convolutae, held beneath the epidermis. Isolated populations of S. roscoffensis span a broad geographical range along the north-eastern Atlantic coast, from Wales to Portugal. The only known population of the worm in the United Kingdom was discovered in Wales decades ago, but very little research has been conducted since. For 13 months, we measured how environmental conditions such as temperature, salinity and light intensity coincided with population size at the Welsh field site. To establish phylogenetic relationships among the different populations and their algal symbionts, we designed new polymerase chain reaction (PCR) oligonucleotides to assess the nucleotide diversity of the mitochondrial cytochrome c oxidase I subunit (COI) gene in gDNA extracted from representative worms across their known range (Wales, France, Portugal, Spain, and Guernsey). We also targeted the 18S rRNA gene of their algal symbiont, Tetraselmis convolutae. We observed temporal shifts in environmental factors coinciding with fluctuating worm colony size, notably temperature. Based on the molecular data, the worm exhibited different ecotypes across locations, while the algal symbiont showed little genetic variation.

被称为罗斯科夫蠕虫或薄荷酱蠕虫(Symsagittifera roscoffensis)的阿科尔蠕虫因表皮下有共生藻类 Tetraselmis convolutae 而与众不同。S. roscoffensis 的孤立种群分布在大西洋东北部沿海地区,从威尔士到葡萄牙。几十年前,英国在威尔士发现了这种蠕虫的唯一已知种群,但此后的研究很少。在 13 个月的时间里,我们测量了威尔士野外地点的温度、盐度和光照强度等环境条件与种群数量的吻合情况。为了建立不同种群及其藻类共生体之间的系统发育关系,我们设计了新的聚合酶链式反应(PCR)寡核苷酸来评估线粒体细胞色素 c 氧化酶 I 亚基(COI)基因的核苷酸多样性,这些核苷酸是从其已知分布区(威尔士、法国、葡萄牙、西班牙和根西岛)的代表性蠕虫身上提取的 gDNA 中获得的。我们还检测了它们的藻类共生体 Tetraselmis convolutae 的 18S rRNA 基因。我们观察到环境因素的时间变化与蠕虫群落规模的波动相吻合,尤其是温度。根据分子数据,蠕虫在不同地点表现出不同的生态型,而藻类共生体则几乎没有遗传变异。
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引用次数: 0
Knockdown of Lotus japonicus ROP3 alters the root symbiotic phenotype and alters the expression of genes involved in nutrient acquisition during both rhizobial and mycorrhizal symbioses 敲除日本莲 ROP3 会改变根系共生表型,并改变根瘤菌和菌根共生过程中参与养分获取的基因的表达
IF 2.5 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-12-08 DOI: 10.1007/s13199-023-00954-4
Raphael Boussageon, Mario Serrano, Damien Formey, Alexandre Tromas, Daniel Wipf, Pierre-Emmanuel Courty

The rhizobial and the arbuscular mycorrhizal symbioses are present on legume roots and lead to local and systemic transcriptional changes of common and specific plant genes. Among them, some small GTPase proteins called ROPs (Rho of plants) have been shown to be involved in the establishment of the legume-rhizobia interaction. In this study, we aimed to characterise the effects of LjROP3 knockdown in Lotus japonicus on plant physiology and expression of symbiosis-related genes after single and dual inoculation with rhizobia and arbuscular mycorrhizal fungus. In wild-type (Gifu) plants, the dual inoculation increased the shoot and root dry weight, nitrogen (derived from symbiosis) and phosphate content, and the number of arbuscules or nodules compared with single inoculation treatments. In addition, we observed a decrease in the expression of genes encoding the mycorrhizal transcription factors LjRAM1 and LjRAM2, and the downstream genes involved in ammonium (LjAMT2.2) and phosphate (LjPT4 and LjPT8) uptake by the plant at the arbuscule level when the dual inoculation was compared with fungal inoculation. An alteration in the expression of the Nod factor receptor LjNFR1, but not of LjNFR5, was measured in wild-type (Gifu) L. japonicus plants compared to rop3 plants under dual inoculation. We have also measured a reduction in the expression of genes encoding rhizobial and mycorrhizal transcription factors (LjNIN and LjRAM1), and of the downstream mycorrhizal genes involved in ammonium (LjAMT2.2) and phosphate (LjPT4 and LjPT8) uptake by the plant at the arbuscule level. In addition, the expression of AM fungal genes encoding nutrient transporters (known to be expressed at the arbuscule level) was also altered. In conclusion, despite altered expression of plant genes involved in the functioning of the symbioses, and associated with a reduction in the number of nodules and arbuscules, knockdown of LjROP3 did not alter plant growth and nutrition under dual inoculation, suggesting that the beneficial effects of the dual symbiosis were maintained.

豆科植物根部的根瘤菌和丛枝菌根共生会导致常见和特定植物基因发生局部和系统的转录变化。其中,一些被称为 ROPs(植物的 Rho)的小 GTPase 蛋白已被证明参与了豆科植物与根瘤菌相互作用的建立。在这项研究中,我们的目的是鉴定 LjROP3 敲除对日本莲单株和双株接种根瘤菌和丛枝菌根真菌后植物生理和共生相关基因表达的影响。在野生型(Gifu)植物中,与单一接种处理相比,双重接种增加了芽和根的干重、氮(来自共生)和磷酸盐含量以及节丛或结节的数量。此外,我们还观察到,与真菌接种相比,双重接种时,编码菌根转录因子 LjRAM1 和 LjRAM2 的基因以及参与植物在假根水平吸收铵盐(LjAMT2.2)和磷酸盐(LjPT4 和 LjPT8)的下游基因的表达量减少。在双重接种条件下,野生型(Gifu)日本萝蔔植株与rop3植株相比,结节因子受体LjNFR1的表达发生了变化,但LjNFR5的表达没有发生变化。我们还测量到,编码根瘤菌和菌根转录因子(LjNIN 和 LjRAM1)的基因以及参与植物在节层吸收铵(LjAMT2.2)和磷酸盐(LjPT4 和 LjPT8)的下游菌根基因的表达量减少。此外,编码养分转运体的 AM 真菌基因(已知可在节间水平表达)的表达也发生了变化。总之,尽管参与共生功能的植物基因的表达发生了改变,并且与结节和假根数量的减少有关,但敲除 LjROP3 并没有改变双重接种下的植物生长和营养状况,这表明双重共生的有益作用得以保持。
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引用次数: 0
Correction to: A review on nutritional and non-nutritional interactions of symbiotic and associated fungi with insect 更正:共生和伴生真菌与昆虫的营养和非营养相互作用综述
IF 2.5 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-12-08 DOI: 10.1007/s13199-023-00962-4
Mani Kannan, I. Opatovsky
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引用次数: 0
Biological inoculants and chemical fertilizers application produce differential effects on rhizobacterial community structure associated to peanut (Arachis hypogaea L.) and maize (Zea mays L.) plants 施用生物接种剂和化肥对花生(Arachis hypogaea L.)和玉米(Zea mays L.)植株的根瘤菌群落结构有不同的影响
IF 2.5 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-11-29 DOI: 10.1007/s13199-023-00959-z
María Soledad Anzuay, Natalia Pin Viso, Liliana Mercedes Ludueña, Federico Daniel Morla, Romina Yanet Dalmasso, Jorge Guillermo Angelini, Tania Taurian

The use of biological inoculants in replacement of the application of chemical fertilizers is a desirable strategy taking into account it is more sustainable and economically less costly. Considering that agricultural practices can produce effects on soil microbial communities associated to the plant crops, the objective of this study was to analyze and compare the effect of these two practices on the structure of the rhizobacterial community of peanut and maize plants. For this purpose, microcosm assays were performed in which peanut and maize plants were inoculated individually with native peanut phosphate solubilizing strains or chemical fertilized with phosphorus, nitrogen, zinc and sulphur. At the beginning and at the end of the assays, samples of rhizospheric soil DNA were obtained and the structure of the rhizospheric bacterial community was analyzed by high-throughput sequencing of the 16S rRNA gene by using Illumina MiSeq platform. The results obtained indicated that the structures of the rhizospheric bacterial communities were different depending on plant type. It was possible to observe changes with respect to the initial bacterial structure in all taxonomic levels analyzed of all treatments. The more notorious structural changes of bacterial community were observed in those rhizospheres exposed to chemical fertilizers, mainly in soil samples associated to maize plants. The rhizospheric bacterial community of peanut showed to change mainly with plant growth. In conclusion, the rhizobacterial community structure is highly dynamic and influenced by different factors such as type of plant, the fertilizer input and bio-inoculant applied.

考虑到生物接种剂的可持续性和经济成本较低,使用生物接种剂代替化肥是一种可取的策略。考虑到农业实践会对与植物作物相关的土壤微生物群落产生影响,本研究的目的是分析和比较两种农业实践对花生和玉米植株根细菌群落结构的影响。为此,进行了微观试验,花生和玉米植株分别接种本地花生增磷菌株或用磷、氮、锌和硫进行化学施肥。在试验开始和结束时,采集根际土壤DNA样本,利用Illumina MiSeq平台对根际土壤16S rRNA基因进行高通量测序,分析根际细菌群落结构。结果表明,不同植物类型的根际细菌群落结构不同。可以观察到在所有处理的所有分类水平上对初始细菌结构的变化。细菌群落结构变化最明显的是在施用化肥的根际,主要是与玉米植株有关的土壤样品。花生根际细菌群落主要随植株生长而变化。综上所述,根瘤菌群落结构具有高度的动态性,并受到植物类型、肥料投入量和生物接种剂施用等因素的影响。
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引用次数: 0
An overview of the roles of critical insiders and outsiders for reciprocal plant–microbe interaction: Heterotrimeric G-proteins, small RNAs, pollinators, microalgae 植物与微生物相互作用的关键内部和外部角色概述:异源三聚体g蛋白,小rna,传粉媒介,微藻
IF 2.5 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-11-29 DOI: 10.1007/s13199-023-00957-1
Bihter Avşar, Eda Erendemir, Zeynep Taşkin

Plants are exposed to various abiotic stresses, which lead to crop losses and become a significant threat to agriculture worldwide. To survive, they have developed a range of mechanisms throughout their life cycle. While they develop immunity against stressors through their metabolic and hormonal pathways, as another strategy, they can also modify their environment by interacting with symbiotic microorganisms involved in the critical pathways for plant health. Several beneficial microorganisms can be used as plant stimulants to augment plant health and growth. Therefore, elucidating the cause-effect relationship and possible roles of critical players during plant–microbe interaction may help us better understand the usage of microorganisms for plant benefits. The presented review discusses the molecular mechanisms regulating the responses of plants and their environment during plant–microbe interactions. We focus on the potential roles of plant heterotrimeric G-proteins and small RNAs as inside players and the possible roles, connections, and effects of microalgae and pollinators as outside players/elements during plant–microbe interactions under abiotic stress. Utilizing microbial inoculants with a better combination of endophytes based on various plant species/populations under different environmental conditions is critical for successful field applications. The current knowledge in this review may provide a detailed assessment to gain insight into unraveling different parameters for efficient use of the endophytes on plants/crops to address food security challenges and mitigate the impact of climate change on agriculture.

植物受到各种非生物胁迫,导致作物损失,成为全球农业的重大威胁。为了生存,它们在整个生命周期中发展了一系列机制。虽然它们通过代谢和激素途径对应激源产生免疫力,但作为另一种策略,它们也可以通过与参与植物健康关键途径的共生微生物相互作用来改变环境。几种有益微生物可以用作植物兴奋剂,以增强植物的健康和生长。因此,阐明植物-微生物相互作用过程中关键参与者的因果关系和可能的作用可能有助于我们更好地了解微生物对植物的利用。本文综述了植物与微生物相互作用过程中调控植物及其环境反应的分子机制。我们关注植物异源三聚体g蛋白和小rna作为内部参与者的潜在作用,以及微藻和传粉者作为外部参与者/元件在非生物胁迫下植物-微生物相互作用中的可能作用、联系和影响。利用微生物接种剂和不同环境条件下不同植物种类/种群的内生菌的更好组合是成功田间应用的关键。本综述中的现有知识可以提供详细的评估,以深入了解有效利用植物/作物内生菌的不同参数,以应对粮食安全挑战并减轻气候变化对农业的影响。
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引用次数: 0
Bermudagrass plants endophytically colonized with Metarhizium anisopliae isolates reduces the biological performance of fall armyworm 绿僵菌在百慕大草植物内生定殖降低了秋粘虫的生物学性能
IF 2.5 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-11-28 DOI: 10.1007/s13199-023-00958-0
Dylan Thomas Telles Amandio, Daniel Bernardi, Alex Sandro Poltronieri, Leandro do Prado Ribeiro

The knowledge of the interactions between endophytic entomopathogenic fungi and forage plants and their influence on Spodoptera frugiperda, an emerging pest of pastoral systems, is important to elucidate the multifunctionality of these microorganisms and their benefits to agroecosystems. This study investigated the influence of endophytic colonization with different isolates of Metarhizium anisopliae on Cynodon dactylon (L.) Pers (Poaceae) cv. Tifton 85 on biological and behavioral aspects of S. frugiperda. The application of a suspension of isolates (1 × 108 conidia ml−1) to the base (soil drench) of C. dactylon seedlings was effective to promote endophytic colonization. Spodoptera frugiperda caterpillars fed throughout their larval stage with leaves of plants colonized endophytically by the three isolates studied (CEPAF_ENT 25, CEPAF_ENT 27, and IBCB 425) of M. anisopliae showed considerable reduction in their biological performance, especially in parameters of their fertility life table. However, the tested isolates did not show pronounced effects on feeding and oviposition preference, although there was a trend of preference of caterpillars and moths for colonized plants, especially in no-choice tests. Thus, applications of mycoinsecticides based on M. anisopliae for the management of the spittlebug complex (its main use currently) may lead to the endophytic colonization of C. dactylon cv. Tifton 85 and influence S. frugiperda population density as well as the impact this pest causes to pastures. The isolates used in this study exhibit multiple spectrums of action and potential to produce new biological products for the market.

了解内生昆虫病原真菌与饲料植物之间的相互作用及其对草地系统新兴害虫Spodoptera frugiperda的影响,对于阐明这些微生物的多功能性及其对农业生态系统的益处具有重要意义。研究了金龟子绿僵菌不同菌株对短爪蟹(Cynodon dactylon, L.)定殖的影响。白杨(豆科)cv。frugiperda的生物学和行为学研究。将分离菌悬浮液(1 × 108分生孢子ml−1)施用于青茅幼苗基部(土壤淋水),可有效促进内生定植。三株绿僵菌(CEPAF_ENT 25、CEPAF_ENT 27和IBCB 425)在幼虫期以植物叶片为食,其生物学性能显著下降,尤其是生育力生命表参数下降。然而,被试分离株对取食和产卵偏好没有明显的影响,尽管在无选择试验中,幼虫和飞蛾对定殖植物有偏好的趋势。因此,应用以绿僵菌为基础的真菌杀虫剂来管理吐痰菌复合体(其目前的主要用途)可能导致短柄霉的内生定植。并影响果蚜的种群密度以及这种害虫对牧场的影响。本研究中使用的分离物表现出多种作用谱,并有可能为市场生产新的生物制品。
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引用次数: 0
Bioinoculants: the agrarian avengers 生物接种剂:农业复仇者
IF 2.5 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-11-25 DOI: 10.1007/s13199-023-00953-5
Anushree Kamath, Arpit Shukla, Tayyaba Saiyed, Soham Bhatt, Hirva Rathod, Vidhi Makwana, Diya Soni, Shuvomoy Banerjee, Dhara Patel

Bioinoculants are beneficial microorganisms that are used in agriculture to enhance plant growth and productivity, improve soil health, and reduce the use of chemical fertilizers and pesticides. They include bacteria, fungi, protozoa, and endophytes that interact with plants in various ways to promote growth, nutrient uptake, and stress tolerance. The interactions between bioinoculants and their host plants are complex, and different strains of bacteria, fungi, and protozoa have specific interactions with different plants. Understanding these interactions is critical in selecting the appropriate bioinoculant for a particular crop and soil type. This paper reviews the interaction of different types of bioinoculants with plants, and their potential to improve the sustainability of agriculture and their applications. Techniques for applying bioinoculants include seed treatment, soil application, and foliar application. Bioinoculant application has been shown to improve crop yield, quality, and nutrient content. In addition, they help to reduce environmental pollution and protect soil biodiversity. Some of the challenges associated with the application of bioinoculants include the need for optimized formulations, storage, and transportation. To maximize the potential of bioinoculants in sustainable agriculture, it is necessary to continue research into their interactions and develop effective application techniques that can be used on a large scale.

生物接种剂是农业中用于促进植物生长和生产力、改善土壤健康和减少化肥和农药使用的有益微生物。它们包括细菌、真菌、原生动物和内生菌,它们以各种方式与植物相互作用,促进植物生长、营养吸收和抗逆性。生物接种剂与其寄主植物之间的相互作用是复杂的,不同菌株的细菌、真菌和原生动物与不同的植物有特定的相互作用。了解这些相互作用对于为特定作物和土壤类型选择适当的生物接种剂至关重要。本文综述了不同类型的生物接种剂与植物的相互作用,以及它们在提高农业可持续性方面的潜力及其应用。应用生物接种剂的技术包括种子处理、土壤施用和叶面施用。应用生物接种剂已被证明可以提高作物产量、品质和营养含量。此外,它们有助于减少环境污染和保护土壤生物多样性。与生物接种剂应用相关的一些挑战包括需要优化配方、储存和运输。为了最大限度地发挥生物接种剂在可持续农业中的潜力,有必要继续研究它们之间的相互作用,并开发可大规模使用的有效应用技术。
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引用次数: 0
Frankia-actinorhizal symbiosis: a non-chemical biological assemblage for enhanced plant growth, nodulation and reclamation of degraded soils 法兰克-放线根共生:促进植物生长、结瘤和退化土壤复垦的非化学生物组合
IF 2.5 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-11-22 DOI: 10.1007/s13199-023-00956-2
Pranaba Nanda Bhattacharyya, Nazim Forid Islam, Bhaskar Sarma, Bharat Chandra Nath, Laith Khalil Tawfeeq Al-Ani, Didier Lesueur

Actinorhizal symbiosis naturally harbours beneficial categories of diverse plant growth promoting microorganisms (PGPMs), including the Frankia species. The beneficial microorganisms can be used as efficient, non-chemical and sustainable alternatives for adopting effective soil restoration programmes and revegetation schedules in chemical and industrial-contaminated sites, including treating degraded lands contaminated with toxic chemicals and pesticides. It has been proposed that the interactions between the microbial gene pool are of immense agricultural significance that would facilitate an improvement in the health, hygiene and nutrient acquisition pathway of native soil. The present review is focused on exploiting the hitherto-unexplored Frankia-actinorhizal symbiosis with due interest for their application in soil restoration programmes, including the reclamation of degraded lands. This opens up new insights for the development of sustainability in forestry and plantation research. Additionally, it would promise an improvement in plant growth and vigour, hygiene, and other parameters related to crop yield, such as plant biomass, root/shoot ratio, crop yield, and so on. Novel and putative microorganisms isolated from the actinorhizal may be used for bio-transformation of allelochemicals and toxic heavy metals into compounds with modified biological properties, opening up novel avenues for mediating microbial degradation of putative allelochemicals that would otherwise accumulate at phytotoxic levels in soil. Endophyte-host specificities, the phylogeny of Frankia, and the conservation of unique endemic plant genetic resources like actinorhizal plants, are of paramount significance in the advancement of genomics, metabolomics and phenomics.

放线根菌共生中天然蕴藏着多种植物生长促进微生物(PGPMs)的有益种类,其中包括法兰克菌。有益微生物可以作为有效的、非化学的和可持续的替代品,在化学和工业污染的场地采用有效的土壤恢复方案和植被恢复计划,包括处理被有毒化学品和杀虫剂污染的退化土地。微生物基因库之间的相互作用具有重要的农业意义,有助于改善原生土壤的健康、卫生和养分获取途径。本审查的重点是开发迄今尚未开发的弗兰基-放线根共生关系,并对其在土壤恢复方案中的应用,包括退化土地的复垦有适当的兴趣。这为林业和种植园研究的可持续性发展开辟了新的见解。此外,它还有望改善植物的生长和活力、卫生以及与作物产量相关的其他参数,如植物生物量、根冠比、作物产量等。从放线根菌中分离出的新型和假定的微生物可用于化感物质和有毒重金属转化为具有改性生物特性的化合物,为介导假定的化感物质的微生物降解开辟了新的途径,否则这些化感物质将在土壤中积累到植物毒性水平。内生寄主特异性、法兰克属植物的系统发育以及放线根植物等特有植物遗传资源的保护对基因组学、代谢组学和表型组学的发展具有重要意义。
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引用次数: 0
How did the coinoculation of Bradyrhizobium and Azospirillum become indispensable for soybean production in Brazil? 缓生根瘤菌和固氮螺旋菌的共同接种是如何成为巴西大豆生产中不可或缺的?
3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-11-08 DOI: 10.1007/s13199-023-00951-7
Thomas Newton Martin, Rosana Taschetto Vey, Frederico Costa Beber Vieira, Rodrigo Josemar Seminoti Jacques, Matheus Martins Ferreira
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引用次数: 0
Growth promoting effects of endophytic fungus Piriformospora indica in small cardamom (Elettaria cardamomum Maton) 内生真菌Piriformospora indica对小豆蔻(Elettaria cardamomum Maton)生长的促进作用
3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-11-07 DOI: 10.1007/s13199-023-00949-1
H. N. Anjana, K. N. Anith, K. K. Sabu
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引用次数: 0
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