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The faster evolution of signal peptide genes of Frankia in surfactome may be attributed to their cardinal role in symbiotic association Frankia表面组信号肽基因的快速进化可能与它们在共生关联中的重要作用有关
3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-09-15 DOI: 10.1007/s13199-023-00935-7
Sutapa Datta, Indrani Sarkar, Sandipan Ghosh, Sanjiban Goswami, Gargi Sen, Arnab Sen
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引用次数: 0
Ciliates in domestic ruminants in Africa and the first characterization of ciliates (Alveolata, Ciliophora) in the rumen of domestic caprines of the Landim breed (Capra hircus L) from Mozambique 非洲家养反刍动物的纤毛虫及莫桑比克landdim家畜(Capra hircus L)瘤胃纤毛虫(Alveolata, Ciliophora)的首次特征
3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-09-13 DOI: 10.1007/s13199-023-00932-w
Zacarias Rosalina João da Silva, Franciane Cedrola, Mariana Fonseca Rossi, Roberto Júnio Pedroso Dias
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引用次数: 0
Is there a symbiotic cleaning association between ocean sunfish and pelagic seabirds in the Patagonian Shelf? 巴塔哥尼亚大陆架的海洋太阳鱼和远洋海鸟之间是否存在共生清洁关系?
IF 2.5 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-09-01 DOI: 10.1007/s13199-023-00933-9
M. M. Hernandez, Matías Schwartz, Silvana Campodónico, Julián Bastida, J. P. Seco Pon
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引用次数: 0
How the right evolved partners in Cycads and Legumes drive enhanced growth in a harsh environment 苏铁和豆科植物是如何在恶劣的环境中促进生长的
3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-07-01 DOI: 10.1007/s13199-023-00940-w
Nqobile Motsomane, Terence N. Suinyuy, María A. Pérez-Fernández, Anathi Magadlela
Abstract Cycads are ancient plants that establish symbiotic associations with plant growth-promoting (PGP) microbes. These ancient associations are rarely contrasted with more recent associations involving PGP microbes and legumes. This study investigated if Vigna unguiculata growing in Encephalartos villosus rhizosphere and non-rhizosphere soils shares similar symbionts with E. villosus and if there is any sanction by plants towards certain soil bacteria. Also, the biomass accumulation and plant nutrition of V. unguiculata growing in these soils was investigated. Vigna unguiculata seeds were grown in E. villosus rhizosphere and non-rhizosphere soils. Thereafter, growth characteristics and plant nutrition were analyzed. Vigna unguiculata plants grown in E. villosus rhizosphere and non-rhizosphere soils were nodulated by Paenibacillus, Bacillus , Peribacillus, Brevibacillus, Alkalihalobacillus , and Lysinibacillus species identified in E. villosus coralloid roots. Bacteria isolated from nodules and coralloid roots were phylogenetically close, regardless of the soil from which these bacteria came. That supports the filter theory by which specific environmental conditions select certain microbial groups to establish symbiotic interactions with plants. No significant differences were observed in the total plant biomass, however, V. unguiculata plants grown in rhizosphere and non-rhizosphere soils invested significantly more resources in belowground biomass that could be related to the extra nitrogen coming from the biological nitrogen fixation that is devoted to roots. This study shows that V. unguiculata and E. villosus growing in similar soil conditions may share the same symbionts promoting plant nutrient assimilation and growth, this opens an idea of a common evolution of the two species and their symbionts.
苏铁是一种古老的植物,与植物生长促进菌(PGP)建立共生关系。这些古老的关联很少与最近涉及PGP微生物和豆类的关联进行对比。本研究探讨了长在绒毛蕨根际和非根际土壤中的蹄草是否与绒毛蕨具有相似的共生体,以及植物是否对某些土壤细菌具有制裁作用。此外,还研究了在这些土壤中生长的蹄草生物量积累和植物营养状况。在毛豆根际土壤和非根际土壤中分别种植了马蹄莲种子。随后对其生长特性和植物营养进行分析。在长绒豆根际和非根际土壤中生长的长绒豆属植物,在长绒豆根中发现了芽孢杆菌、芽孢杆菌、芽孢杆菌、短芽孢杆菌、碱盐杆菌和溶菌杆菌。从根瘤和珊瑚根中分离出的细菌在系统发育上是接近的,而不管这些细菌来自哪个土壤。这支持了过滤器理论,即特定的环境条件选择某些微生物群与植物建立共生相互作用。植物总生物量差异不显著,但生长在根际和非根际土壤中的牛蹄草植物在地下生物量上投入的资源明显更多,这可能与根系的生物固氮所产生的额外氮有关。本研究表明,在相似的土壤条件下生长的蹄草和绒毛草可能具有相同的共生体,促进植物养分的吸收和生长,这为两种植物及其共生体的共同进化提供了思路。
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引用次数: 0
Metabolic and genetic responses to simulated overwintering conditions of alfalfa-rhizobia associations contrasted in their freezing tolerance 在模拟越冬条件下,苜蓿-根瘤菌组合的代谢和遗传反应在抗冻性方面进行了对比
3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-07-01 DOI: 10.1007/s13199-023-00939-3
Emmanuelle D’Amours, Annick Bertrand, Jean Cloutier, Annie Claessens, Solen Rocher, Philippe Seguin
Abstract The study of winter stress tolerance in perennial legumes needs to consider the complete symbiotic system including both plants and bacteria since these two partners are differentially affected by stress conditions. Here, we compared the regrowth after a freezing stress of four different associations of two alfalfa populations differing in freezing tolerance (A-TF0 and A-TF7) inoculated with two Sinorhizobium (Ensifer) meliloti strains (B399 and NRG34) of contrasted adaptation to cold. To understand the contribution of each partner to a better regrowth performance of an association after freezing, we identified molecular traits having major roles in cold acclimation, freezing tolerance, and those involved in the crosstalk between alfalfa and its symbiotic partner. Regrowth after exposure to a freezing stress was 35% larger in the A-TF7 × NRG34 than in the A-TF0 × B399 association. The metabolomic study of roots, crowns and, more specifically, nodules, revealed profound changes in these organs, switching from a sink to support cold acclimation to a source of reserves enabling regrowth after deacclimation. Marked increases in concentrations of stachyose and raffinose, two sugars of the raffinose-family oligosaccharides (RFO), and in the expression level of a gene of the RFO synthetic pathway were observed in response to cold acclimation supporting the importance of a protective role for RFO in alfalfa. Both cold-adapted partners of the symbiotic association contributed to increases in arginine concentration in nodules in response to cold acclimation and deacclimation underscoring the importance of N storage and remobilization for a successful overwintering in alfalfa.
摘要:多年生豆科植物的耐冬性研究需要考虑包括植物和细菌在内的完整的共生系统,因为这两个伙伴受胁迫条件的影响是不同的。本研究比较了两个抗冻性不同的苜蓿群体(a - tf0和a - tf7)接种两种不同抗冻性的Sinorhizobium (Ensifer) meliloti菌株(B399和NRG34)后的4种不同组合在低温胁迫下的再生情况。为了了解每个伙伴在冷冻后对更好的结合体再生性能的贡献,我们确定了在苜蓿及其共生伙伴之间的冷驯化、抗冻性和串扰中起主要作用的分子性状。冷冻胁迫后,a - tf7 × NRG34的再生能力比a - tf0 × B399的再生能力高35%。对根、冠,特别是根瘤的代谢组学研究揭示了这些器官的深刻变化,从支持冷驯化的汇转变为支持脱驯化后再生的储备来源。在低温驯化条件下,紫花苜蓿的水苏糖和棉子糖(RFO家族的两种糖)的浓度显著增加,RFO合成途径的一个基因的表达水平也显著增加,这表明RFO在紫花苜蓿中具有重要的保护作用。这两个共生关系的冷适应伙伴都有助于提高根瘤中精氨酸浓度,以响应冷驯化和去驯化,强调氮储存和再动员对苜蓿成功越冬的重要性。
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引用次数: 0
Algal symbionts of the freshwater sponge Ephydatia muelleri 淡水海绵棘藻的共生藻类
3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-07-01 DOI: 10.1007/s13199-023-00934-8
Katelyn Hustus, Cristina Díez-Vives, Konstantina Mitsi, Jasmine Nutakki, Victor Kering, Ivy T. Nguyen, Mayra Gomes Spencer, Sally P. Leys, Malcolm S. Hill, Ana Riesgo, April L. Hill
Abstract The freshwater sponge, Ephydatia muelleri , is an emerging model system for studying animal:microbe symbioses. Intracellular green microalgae are one of the more common symbionts that live in a facultative mutualism with E. muelleri . While these symbioses have long been known, the identity of the algal symbionts in E. muelleri cells has not been studied in detail. Here, we isolate and characterize endosymbiotic algae from E. muelleri collected from different geographic locations. We find that the algae can be transmitted through asexually produced gemmules and importantly that they can form symbioses with different, differentiated sponge cell types in the adult sponge. Our findings indicate that at least two algal lineages form endosymbioses with E. muelleri . One of the lineages includes species commonly found in samples from two locations in Canada and one in the United States (clade 1: closely related to Auxenochlorella pyrenoidosa ). The other clade includes algae found in sponges from one site in Maine, USA, and Lewiniosphaera symbiontica , which is a strain isolated in 1956 from the freshwater sponge Spongilla . We compared microbiomes found in cultures of microalgae as well as the original sponge hosts, and found that very similar bacterial microbiomes associate with both clades (91 orders of Bacteria are shared among the samples we compared). The microbiomes found in the cultures resemble, with a high degree of overlap, the microbiome associated with the sponge host.
淡水海绵(Ephydatia muelleri)是研究动物与微生物共生的新兴模式系统。胞内绿色微藻是一种较常见的共生体,生活在兼性共生与e.m uelleri。虽然这些共生体早已为人所知,但穆勒氏杆菌细胞中藻类共生体的身份尚未得到详细研究。在这里,我们从不同地理位置收集的穆勒氏杆菌中分离和表征了内共生藻类。我们发现藻类可以通过无性繁殖的小珠传播,重要的是它们可以在成体海绵中与不同的、分化的海绵细胞类型形成共生。我们的研究结果表明,至少有两种藻类谱系与muelleri e形成内共生。其中一个谱系包括在加拿大两个地点和美国一个地点的样本中常见的物种(进化支1:与pyrenoidosa Auxenochlorella密切相关)。另一个分支包括在美国缅因州一个地点的海绵中发现的藻类,以及Lewiniosphaera symbiontica,这是1956年从淡水海绵海绵中分离出来的一个菌株。我们比较了在微藻培养物和原始海绵宿主中发现的微生物组,发现这两个分支的细菌微生物组非常相似(在我们比较的样品中有91目细菌共享)。在培养物中发现的微生物组与海绵宿主的微生物组相似,并有高度重叠。
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引用次数: 0
Communication between plant roots and the soil microbiome; involvement in plant growth and development 植物根系与土壤微生物群的交流;参与植物的生长发育
3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-07-01 DOI: 10.1007/s13199-023-00941-9
Rebaona R. Molefe, Adenike E. Amoo, Olubukola O. Babalola
Abstract Root-associated microbial communities have strong influences on the health and development of plants. Through the secretion of root exudates, the soil microbiome is impacted by plants, thereby steering plant-soil reactions. Considering the importance of root exudates in the establishment of symbiotic associations in the rhizosphere, it is quite clear that understanding the interaction between plant roots and the soil microbiome may prove beneficial. Here, we review the interaction between plant root exudates and microbial communities in the soil. The influence of these bioactive molecules on the structure and function of soil microbes is also considered. We additionally, deliberate on how plants determine the soil microbiome and how they extract nutrients from endophytes for the augmentation of their growth and development. A good perspective of the communication between plant roots and the soil microbiome could lead to increased crop production, thereby limiting the need for synthetic fertilizers.
根系相关微生物群落对植物的健康和发育具有重要影响。通过根系分泌物的分泌,土壤微生物群受到植物的影响,从而引导植物-土壤反应。考虑到根分泌物在根际共生关系建立中的重要性,很明显,了解植物根与土壤微生物群之间的相互作用可能是有益的。本文综述了植物根系分泌物与土壤微生物群落之间的相互作用。本文还讨论了这些生物活性分子对土壤微生物结构和功能的影响。此外,我们还研究了植物如何决定土壤微生物群,以及它们如何从内生菌中提取营养物质以促进其生长发育。对植物根系与土壤微生物群之间交流的良好认识可能导致作物产量的增加,从而限制对合成肥料的需求。
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引用次数: 0
Host-Epichloë endophyte compatibility plays a significant role in the estimate of genetic variances among cross progenies of tall fescue Host-Epichloë内生菌相容性在高羊茅杂交后代遗传变异估计中起重要作用
3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-07-01 DOI: 10.1007/s13199-023-00937-5
Serveh Fathi, Aghafakhr Mirlohi, Mohammad R. Sabzalian
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引用次数: 0
Secondary metabolites from endophytic fungi: Production, methods of analysis, and diverse pharmaceutical potential. 内生真菌的次生代谢产物:生产、分析方法和不同的药用潜力。
IF 2.5 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-06-08 DOI: 10.1007/s13199-023-00925-9
Vivek Kumar Singh, Awanish Kumar

The synthesis of secondary metabolites is a constantly functioning metabolic pathway in all living systems. Secondary metabolites can be broken down into numerous classes, including alkaloids, coumarins, flavonoids, lignans, saponins, terpenes, quinones, xanthones, and others. However, animals lack the routes of synthesis of these compounds, while plants, fungi, and bacteria all synthesize them. The primary function of bioactive metabolites (BM) synthesized from endophytic fungi (EF) is to make the host plants resistant to pathogens. EF is a group of fungal communities that colonize host tissues' intracellular or intercellular spaces. EF serves as a storehouse of the above-mentioned bioactive metabolites, providing beneficial effects to their hosts. BM of EF could be promising candidates for anti-cancer, anti-malarial, anti-tuberculosis, antiviral, anti-inflammatory, etc. because EF is regarded as an unexploited and untapped source of novel BM for effective drug candidates. Due to the emergence of drug resistance, there is an urgent need to search for new bioactive compounds that combat resistance. This article summarizes the production of BM from EF, high throughput methods for analysis, and their pharmaceutical application. The emphasis is on the diversity of metabolic products from EF, yield, method of purification/characterization, and various functions/activities of EF. Discussed information led to the development of new drugs and food additives that were more effective in the treatment of disease. This review shed light on the pharmacological potential of the fungal bioactive metabolites and emphasizes to exploit them in the future for therapeutic purposes.

次级代谢产物的合成是所有生命系统中一个不断发挥作用的代谢途径。次生代谢产物可分为许多类别,包括生物碱、香豆素、类黄酮、木脂素、皂苷、萜烯、醌、黄酮等。然而,动物缺乏这些化合物的合成途径,而植物、真菌和细菌都能合成这些化合物。由内生真菌(EF)合成的生物活性代谢产物(BM)的主要功能是使宿主植物对病原体产生抗性。EF是一组在宿主组织的细胞内或细胞间定殖的真菌群落。EF是上述生物活性代谢产物的仓库,为宿主提供有益的作用。EF的BM可能是抗癌、抗疟疾、抗结核病、抗病毒、抗炎等有前景的候选药物,因为EF被认为是有效候选药物的新BM的未开发和未开发的来源。由于耐药性的出现,迫切需要寻找新的对抗耐药性的生物活性化合物。本文综述了EF生产BM、高通量分析方法及其在药物中的应用。重点是EF代谢产物的多样性、产量、纯化/表征方法以及EF的各种功能/活性。讨论的信息促使开发出更有效治疗疾病的新药和食品添加剂。这篇综述阐明了真菌生物活性代谢产物的药理潜力,并强调在未来将其用于治疗目的。
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引用次数: 3
Spatial, temporal and network analyses provide insights into the dynamics of the bacterial communities associated with two species of Caribbean octocorals and indicate possible key taxa. 空间、时间和网络分析深入了解了与两种加勒比八珊瑚相关的细菌群落的动态,并指出了可能的关键分类群。
IF 2.5 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-06-03 DOI: 10.1007/s13199-023-00923-x
M Monti, A Giorgi, D W Kemp, J B Olson

Despite the current decline of scleractinian coral populations, octocorals are thriving on reefs in the Caribbean Sea and western North Atlantic Ocean. These cnidarians are holobiont entities, interacting with a diverse array of microorganisms. Few studies have investigated the spatial and temporal stability of the bacterial communities associated with octocoral species and information regarding the co-occurrence and potential interactions between specific members of these bacterial communities remain sparse. To address this knowledge gap, this study investigated the stability of the bacterial assemblages associated with two common Caribbean octocoral species, Eunicea flexuosa and Antillogorgia americana, across time and geographical locations and performed network analyses to investigate potential bacterial interactions. Results demonstrated that general inferences regarding the spatial and temporal stability of octocoral-associated bacterial communities should not be made, as host-specific characteristics may influence these factors. In addition, network analyses revealed differences in the complexity of the interactions between bacteria among the octocoral species analyzed, while highlighting the presence of genera known to produce bioactive secondary metabolites in both octocorals that may play fundamental roles in structuring the octocoral-associated bacteriome.

Supplementary information: The online version contains supplementary material available at 10.1007/s13199-023-00923-x.

尽管目前巩膜珊瑚数量有所下降,但八角珊瑚在加勒比海和北大西洋西部的珊瑚礁上仍在茁壮成长。这些线虫是全生物实体,与各种各样的微生物相互作用。很少有研究调查与八珊瑚物种相关的细菌群落的空间和时间稳定性,关于这些细菌群落的特定成员之间的共生和潜在相互作用的信息仍然很少。为了解决这一知识差距,本研究调查了两种常见的加勒比八珊瑚物种弯曲真珊瑚(Eunicea flexuosa)和美洲真珊瑚(Antillorgia americana)的细菌组合在时间和地理位置上的稳定性,并进行了网络分析,以调查潜在的细菌相互作用。结果表明,不应对八珊瑚相关细菌群落的空间和时间稳定性进行一般推断,因为宿主的特定特征可能会影响这些因素。此外,网络分析揭示了所分析的八珊瑚物种中细菌之间相互作用的复杂性存在差异,同时强调了已知在两种八珊瑚中产生生物活性次级代谢产物的属的存在,这些属可能在构建八珊瑚相关菌群中发挥根本作用。补充信息:在线版本包含补充材料,网址为10.1007/s13199-023-00923-x。
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引用次数: 0
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Symbiosis
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