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Communication between plant roots and the soil microbiome; involvement in plant growth and development 植物根系与土壤微生物群的交流;参与植物的生长发育
3区 生物学 Q3 MICROBIOLOGY Pub Date : 2023-07-01 DOI: 10.1007/s13199-023-00941-9
Rebaona R. Molefe, Adenike E. Amoo, Olubukola O. Babalola
Abstract Root-associated microbial communities have strong influences on the health and development of plants. Through the secretion of root exudates, the soil microbiome is impacted by plants, thereby steering plant-soil reactions. Considering the importance of root exudates in the establishment of symbiotic associations in the rhizosphere, it is quite clear that understanding the interaction between plant roots and the soil microbiome may prove beneficial. Here, we review the interaction between plant root exudates and microbial communities in the soil. The influence of these bioactive molecules on the structure and function of soil microbes is also considered. We additionally, deliberate on how plants determine the soil microbiome and how they extract nutrients from endophytes for the augmentation of their growth and development. A good perspective of the communication between plant roots and the soil microbiome could lead to increased crop production, thereby limiting the need for synthetic fertilizers.
根系相关微生物群落对植物的健康和发育具有重要影响。通过根系分泌物的分泌,土壤微生物群受到植物的影响,从而引导植物-土壤反应。考虑到根分泌物在根际共生关系建立中的重要性,很明显,了解植物根与土壤微生物群之间的相互作用可能是有益的。本文综述了植物根系分泌物与土壤微生物群落之间的相互作用。本文还讨论了这些生物活性分子对土壤微生物结构和功能的影响。此外,我们还研究了植物如何决定土壤微生物群,以及它们如何从内生菌中提取营养物质以促进其生长发育。对植物根系与土壤微生物群之间交流的良好认识可能导致作物产量的增加,从而限制对合成肥料的需求。
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引用次数: 0
Host-Epichloë endophyte compatibility plays a significant role in the estimate of genetic variances among cross progenies of tall fescue Host-Epichloë内生菌相容性在高羊茅杂交后代遗传变异估计中起重要作用
3区 生物学 Q3 MICROBIOLOGY Pub Date : 2023-07-01 DOI: 10.1007/s13199-023-00937-5
Serveh Fathi, Aghafakhr Mirlohi, Mohammad R. Sabzalian
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引用次数: 0
Secondary metabolites from endophytic fungi: Production, methods of analysis, and diverse pharmaceutical potential. 内生真菌的次生代谢产物:生产、分析方法和不同的药用潜力。
IF 2.5 3区 生物学 Q3 MICROBIOLOGY Pub Date : 2023-06-08 DOI: 10.1007/s13199-023-00925-9
Vivek Kumar Singh, Awanish Kumar

The synthesis of secondary metabolites is a constantly functioning metabolic pathway in all living systems. Secondary metabolites can be broken down into numerous classes, including alkaloids, coumarins, flavonoids, lignans, saponins, terpenes, quinones, xanthones, and others. However, animals lack the routes of synthesis of these compounds, while plants, fungi, and bacteria all synthesize them. The primary function of bioactive metabolites (BM) synthesized from endophytic fungi (EF) is to make the host plants resistant to pathogens. EF is a group of fungal communities that colonize host tissues' intracellular or intercellular spaces. EF serves as a storehouse of the above-mentioned bioactive metabolites, providing beneficial effects to their hosts. BM of EF could be promising candidates for anti-cancer, anti-malarial, anti-tuberculosis, antiviral, anti-inflammatory, etc. because EF is regarded as an unexploited and untapped source of novel BM for effective drug candidates. Due to the emergence of drug resistance, there is an urgent need to search for new bioactive compounds that combat resistance. This article summarizes the production of BM from EF, high throughput methods for analysis, and their pharmaceutical application. The emphasis is on the diversity of metabolic products from EF, yield, method of purification/characterization, and various functions/activities of EF. Discussed information led to the development of new drugs and food additives that were more effective in the treatment of disease. This review shed light on the pharmacological potential of the fungal bioactive metabolites and emphasizes to exploit them in the future for therapeutic purposes.

次级代谢产物的合成是所有生命系统中一个不断发挥作用的代谢途径。次生代谢产物可分为许多类别,包括生物碱、香豆素、类黄酮、木脂素、皂苷、萜烯、醌、黄酮等。然而,动物缺乏这些化合物的合成途径,而植物、真菌和细菌都能合成这些化合物。由内生真菌(EF)合成的生物活性代谢产物(BM)的主要功能是使宿主植物对病原体产生抗性。EF是一组在宿主组织的细胞内或细胞间定殖的真菌群落。EF是上述生物活性代谢产物的仓库,为宿主提供有益的作用。EF的BM可能是抗癌、抗疟疾、抗结核病、抗病毒、抗炎等有前景的候选药物,因为EF被认为是有效候选药物的新BM的未开发和未开发的来源。由于耐药性的出现,迫切需要寻找新的对抗耐药性的生物活性化合物。本文综述了EF生产BM、高通量分析方法及其在药物中的应用。重点是EF代谢产物的多样性、产量、纯化/表征方法以及EF的各种功能/活性。讨论的信息促使开发出更有效治疗疾病的新药和食品添加剂。这篇综述阐明了真菌生物活性代谢产物的药理潜力,并强调在未来将其用于治疗目的。
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引用次数: 3
Spatial, temporal and network analyses provide insights into the dynamics of the bacterial communities associated with two species of Caribbean octocorals and indicate possible key taxa. 空间、时间和网络分析深入了解了与两种加勒比八珊瑚相关的细菌群落的动态,并指出了可能的关键分类群。
IF 2.5 3区 生物学 Q3 MICROBIOLOGY Pub Date : 2023-06-03 DOI: 10.1007/s13199-023-00923-x
M Monti, A Giorgi, D W Kemp, J B Olson

Despite the current decline of scleractinian coral populations, octocorals are thriving on reefs in the Caribbean Sea and western North Atlantic Ocean. These cnidarians are holobiont entities, interacting with a diverse array of microorganisms. Few studies have investigated the spatial and temporal stability of the bacterial communities associated with octocoral species and information regarding the co-occurrence and potential interactions between specific members of these bacterial communities remain sparse. To address this knowledge gap, this study investigated the stability of the bacterial assemblages associated with two common Caribbean octocoral species, Eunicea flexuosa and Antillogorgia americana, across time and geographical locations and performed network analyses to investigate potential bacterial interactions. Results demonstrated that general inferences regarding the spatial and temporal stability of octocoral-associated bacterial communities should not be made, as host-specific characteristics may influence these factors. In addition, network analyses revealed differences in the complexity of the interactions between bacteria among the octocoral species analyzed, while highlighting the presence of genera known to produce bioactive secondary metabolites in both octocorals that may play fundamental roles in structuring the octocoral-associated bacteriome.

Supplementary information: The online version contains supplementary material available at 10.1007/s13199-023-00923-x.

尽管目前巩膜珊瑚数量有所下降,但八角珊瑚在加勒比海和北大西洋西部的珊瑚礁上仍在茁壮成长。这些线虫是全生物实体,与各种各样的微生物相互作用。很少有研究调查与八珊瑚物种相关的细菌群落的空间和时间稳定性,关于这些细菌群落的特定成员之间的共生和潜在相互作用的信息仍然很少。为了解决这一知识差距,本研究调查了两种常见的加勒比八珊瑚物种弯曲真珊瑚(Eunicea flexuosa)和美洲真珊瑚(Antillorgia americana)的细菌组合在时间和地理位置上的稳定性,并进行了网络分析,以调查潜在的细菌相互作用。结果表明,不应对八珊瑚相关细菌群落的空间和时间稳定性进行一般推断,因为宿主的特定特征可能会影响这些因素。此外,网络分析揭示了所分析的八珊瑚物种中细菌之间相互作用的复杂性存在差异,同时强调了已知在两种八珊瑚中产生生物活性次级代谢产物的属的存在,这些属可能在构建八珊瑚相关菌群中发挥根本作用。补充信息:在线版本包含补充材料,网址为10.1007/s13199-023-00923-x。
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引用次数: 0
Mating system of the symbiotic shrimp Chernocaris placunae (Decapoda: Palaemonidae) in Vietnam: social monogamy and differences between two sites with contrasting environmental conditions 越南共生对虾黑斑对虾(十足目:黑斑对虾科)的交配制度:社会一夫一妻制及其在不同环境条件下的差异
IF 2.5 3区 生物学 Q3 MICROBIOLOGY Pub Date : 2023-06-01 DOI: 10.1007/s13199-023-00926-8
Juan Antonio Baeza, I. Marin
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引用次数: 0
Population and diversity of pigeonpea rhizobia from the Indo-Gangetic plains of India 印度印度河-恒河平原鸽豌豆根瘤菌的种群和多样性
IF 2.5 3区 生物学 Q3 MICROBIOLOGY Pub Date : 2023-06-01 DOI: 10.1007/s13199-023-00931-x
Shivpujan Kumar, Prachi Singh, Murugan Kumar, Mahendra Vikram Singh Rajawat, W. A. Ansari, D. Rao, A. Saxena
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引用次数: 0
Bioprospecting potentials of endophytic microbes in the sustainable biotechnological applications 内生微生物在可持续生物技术应用中的生物勘探潜力
IF 2.5 3区 生物学 Q3 MICROBIOLOGY Pub Date : 2023-06-01 DOI: 10.1007/s13199-023-00928-6
Dixita Chettri, Jagat Rathod, Ashwani Kumar Verma, Shilpi Ghosh, A. Verma
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引用次数: 0
Differentially abundant bacteria drive the N2-fixation of a widespread moss in the forest-tundra transition zone 在森林-苔原过渡地带,不同数量的细菌驱动广泛分布的苔藓对n2的固定
3区 生物学 Q3 MICROBIOLOGY Pub Date : 2023-06-01 DOI: 10.1007/s13199-023-00930-y
Dennis Alejandro Escolástico-Ortiz, Charlotte Blasi, Jean-Philippe Bellenger, Nicolas Derome, Juan Carlos Villarreal-A
Bryophytes maintain symbiosis with bacteria influencing the local nutrient budget. Moss bacterial communities are composed of a core microbiome and bacteria recruited from environmental sources. Notably, symbiotic N2-fixing bacteria contribute to the N budget in northern ecosystems through biological nitrogen fixation. This process may be affected by the abundance of diazotrophs and moss nutrient content. We used the abundant moss Racomitrium lanuginosum in a forest tundra and shrub tundra in Northern Quebec, Canada, to investigate the bacterial and diazotrophic communities associated with habitat type using amplicon sequencing of the bacterial 16S rRNA and nifH genes and test whether the moss core microbiome has recruitment from the soil bacteria community. The nifH amplicons and element analysis were used to test the effect of diazotrophic abundance and moss nutrient content on N2-fixation activity estimated by acetylene reduction assays. Moss microbial communities between tundra types hosted similar bacterial diversity but differentially abundant groups and characteristic microbial interaction patterns. The core microbiome of R. lanuginosum is composed of bacteria strongly associated with northern mosses with no significant recruitment from the soil. The relative abundances of dominant diazotrophs are significantly correlated with acetylene reduction rates. In contrast, the moss nutrient content did not significantly drive N2-fixation. The proteobacterial genera Azorhizobium and Rhodomicrobium represent newly reported bacteria associated with N2-fixation rates in the tundra. We identified critical bacterial groups related to moss-bacterial symbiosis and N2-fixation in the forest-tundra transition zone, a changing environment susceptible to climate warming.
苔藓植物与影响当地营养收支的细菌保持共生关系。苔藓细菌群落由核心微生物组和从环境来源招募的细菌组成。值得注意的是,共生固氮细菌通过生物固氮对北方生态系统的氮收支做出了贡献。这一过程可能受到重氮营养体丰度和苔藓养分含量的影响。利用加拿大魁北克北部森林冻土带和灌木冻土带中丰富的苔藓Racomitrium lanuginosum,利用细菌16S rRNA和nifH基因的扩增子测序,研究了与生境类型相关的细菌和重氮营养群落,并测试了苔藓核心微生物群是否从土壤细菌群落中招募。利用nifH扩增子和元素分析,考察重氮营养丰度和苔藓养分含量对乙炔还原法测定的固氮活性的影响。不同冻土带类型的苔藓微生物群落具有相似的细菌多样性,但类群丰富程度和微生物相互作用模式存在差异。羊草的核心微生物群由与北方苔藓密切相关的细菌组成,没有明显的土壤补充。显性重氮营养体的相对丰度与乙炔还原率显著相关。相比之下,苔藓养分含量对氮的固定没有显著的驱动作用。变形菌属氮根菌属和红微生物属代表了冻土带中与氮固定率相关的新报道的细菌。我们在森林-苔原过渡带中发现了与苔藓-细菌共生和n2固定有关的关键细菌群,这是一个易受气候变暖影响的变化环境。
{"title":"Differentially abundant bacteria drive the N2-fixation of a widespread moss in the forest-tundra transition zone","authors":"Dennis Alejandro Escolástico-Ortiz, Charlotte Blasi, Jean-Philippe Bellenger, Nicolas Derome, Juan Carlos Villarreal-A","doi":"10.1007/s13199-023-00930-y","DOIUrl":"https://doi.org/10.1007/s13199-023-00930-y","url":null,"abstract":"Bryophytes maintain symbiosis with bacteria influencing the local nutrient budget. Moss bacterial communities are composed of a core microbiome and bacteria recruited from environmental sources. Notably, symbiotic N2-fixing bacteria contribute to the N budget in northern ecosystems through biological nitrogen fixation. This process may be affected by the abundance of diazotrophs and moss nutrient content. We used the abundant moss Racomitrium lanuginosum in a forest tundra and shrub tundra in Northern Quebec, Canada, to investigate the bacterial and diazotrophic communities associated with habitat type using amplicon sequencing of the bacterial 16S rRNA and nifH genes and test whether the moss core microbiome has recruitment from the soil bacteria community. The nifH amplicons and element analysis were used to test the effect of diazotrophic abundance and moss nutrient content on N2-fixation activity estimated by acetylene reduction assays. Moss microbial communities between tundra types hosted similar bacterial diversity but differentially abundant groups and characteristic microbial interaction patterns. The core microbiome of R. lanuginosum is composed of bacteria strongly associated with northern mosses with no significant recruitment from the soil. The relative abundances of dominant diazotrophs are significantly correlated with acetylene reduction rates. In contrast, the moss nutrient content did not significantly drive N2-fixation. The proteobacterial genera Azorhizobium and Rhodomicrobium represent newly reported bacteria associated with N2-fixation rates in the tundra. We identified critical bacterial groups related to moss-bacterial symbiosis and N2-fixation in the forest-tundra transition zone, a changing environment susceptible to climate warming.","PeriodicalId":22123,"journal":{"name":"Symbiosis","volume":"39 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135046267","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Endophytic fungus Trichoderma atroviride D16 increases tanshinone accumulation in Salvia miltiorrhiza plantlets by enhancing abscisic acid and salicylic acid signaling 内生真菌木霉D16通过增强脱落酸和水杨酸信号传导增加丹参植株中丹参酮的积累
IF 2.5 3区 生物学 Q3 MICROBIOLOGY Pub Date : 2023-06-01 DOI: 10.1007/s13199-023-00927-7
Xing-guang Xie, Ke-Xin Sheng, Wei Lu, Hao Wang, K. Rahman, K.-M. Feng, T. Han
{"title":"Endophytic fungus Trichoderma atroviride D16 increases tanshinone accumulation in Salvia miltiorrhiza plantlets by enhancing abscisic acid and salicylic acid signaling","authors":"Xing-guang Xie, Ke-Xin Sheng, Wei Lu, Hao Wang, K. Rahman, K.-M. Feng, T. Han","doi":"10.1007/s13199-023-00927-7","DOIUrl":"https://doi.org/10.1007/s13199-023-00927-7","url":null,"abstract":"","PeriodicalId":22123,"journal":{"name":"Symbiosis","volume":"90 1","pages":"171 - 181"},"PeriodicalIF":2.5,"publicationDate":"2023-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"43734482","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Arbuscular mycorrhizal fungi participate to the restoration of a gypsum mining site in western Algeria 丛枝菌根真菌参与阿尔及利亚西部石膏矿遗址的修复
3区 生物学 Q3 MICROBIOLOGY Pub Date : 2023-06-01 DOI: 10.1007/s13199-023-00936-6
Najat Madjoub, Celien Durney, Antoine Sportes, Pierre-Antoine Noceto, Daniel Wipf, Pierre-Emmanuel Courty, Abdelkader Bekki
{"title":"Arbuscular mycorrhizal fungi participate to the restoration of a gypsum mining site in western Algeria","authors":"Najat Madjoub, Celien Durney, Antoine Sportes, Pierre-Antoine Noceto, Daniel Wipf, Pierre-Emmanuel Courty, Abdelkader Bekki","doi":"10.1007/s13199-023-00936-6","DOIUrl":"https://doi.org/10.1007/s13199-023-00936-6","url":null,"abstract":"","PeriodicalId":22123,"journal":{"name":"Symbiosis","volume":"7 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135144122","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Symbiosis
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