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Calculating Veterinary Clinical Pathology Reference Intervals for Research at the Integrated Research Facility, NIAID: A Practical Application of Data Partitioning and Statistical Methodology. 计算兽医临床病理参考区间的综合研究设施,NIAID:数据划分和统计方法的实际应用。
IF 1.8 4区 医学 Q3 PATHOLOGY Pub Date : 2025-10-01 Epub Date: 2025-08-23 DOI: 10.1177/01926233251352495
Daniel B Woodburn, Jeremy J Bearss, Camille M Lake, Natalie L Twilley, Whitney L Do, Joshua R Porter, Jing Qin, Kevin Footer, Sean Bartlinski, Joe Croghan

The veterinary research community requires statistically robust reference intervals in which to contextualize the results of laboratory tests obtained in research studies. While published reference intervals are available for veterinary clinical practice, they typically do not account for differences in animal husbandry, variations in analytical equipment, and the diverse range of species encountered in a research setting. In addition, existing guidelines for statistical calculation of reference intervals do not address commonly encountered issues with data quality, sample size, research-induced population biases, and other impediments. In this manuscript, we document our pipeline to extract, partition, analyze, and statistically summarize in-house clinical pathology data for developing useful reference intervals to support research at the Integrated Research Facility at Fort Detrick (National Institute of Allergy and Infectious Diseases) and showcase a practical application of statistical methodology that can guide other facilities in their own determination of clinical pathology reference intervals.

兽医研究界需要统计上可靠的参考区间,以便将研究中获得的实验室测试结果置于背景中。虽然已发表的参考区间可用于兽医临床实践,但它们通常不能解释畜牧业的差异、分析设备的变化以及研究环境中遇到的物种的不同范围。此外,现有的参考区间统计计算指南没有解决数据质量、样本量、研究引起的人口偏差和其他障碍等常见问题。在这篇手稿中,我们记录了我们提取、分割、分析和统计总结内部临床病理数据的流程,以开发有用的参考区间,以支持Fort Detrick(国家过敏和传染病研究所)综合研究设施的研究,并展示了统计方法的实际应用,可以指导其他设施自己确定临床病理参考区间。
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引用次数: 0
Toxicologic Pathology Forum*: Opinion on Qualitative Severity Descriptors to Express Magnitude of Changes in Clinical Pathology Endpoints in Nonclinical Toxicity Studies. 毒理学病理论坛*:关于表达非临床毒性研究中临床病理终点变化幅度的定性严重性描述符的意见。
IF 1.8 4区 医学 Q3 PATHOLOGY Pub Date : 2025-08-01 Epub Date: 2025-05-31 DOI: 10.1177/01926233251341271
N K Tripathi, L Ramaiah, T Arndt, L Cregar, A O Adedeji, D Meyer, J Whalan, A E Schultze

Clinical pathology endpoints are routinely assessed in nonclinical toxicity studies and the magnitude of test article-related changes is frequently expressed using quantitative and/or qualitative severity descriptors. Quantitative descriptors (ie, percent or fold change) are easily calculated to express numerical magnitude of a change but may not adequately convey biological relevance. A specific quantitative magnitude may be associated with vastly different levels of pathophysiologic relevance depending on several factors, including the nature of the endpoint, the animal species/strain, and the magnitude and direction of change. Qualitative descriptors (eg, minimal and mild) offer a succinct way to provide additional context to the pathophysiologic relevance but are more challenging to ascribe to a change. The assignment of qualitative descriptors often requires a subjective, comprehensive, and multifaceted approach using various factors in addition to numerical calculation. Because of the subjectivity involved, the qualitative severity descriptor assigned to a specific change may differ among clinical pathology endpoints, species/strain, contributing scientists, and studies/programs. Quantitative and qualitative severity descriptors may provide complementary information and may be used individually or in combination. This opinion piece primarily explains the process and discusses caveats and various factors taken into consideration by clinical pathologists while ascribing qualitative severity descriptors.

临床病理终点通常在非临床毒性研究中进行评估,试验品相关变化的大小通常使用定量和/或定性严重程度描述符来表达。定量描述符(即百分比或倍数变化)很容易计算,以表示变化的数值大小,但可能无法充分传达生物学相关性。具体的数量大小可能与病理生理相关性的不同程度有关,这取决于几个因素,包括终点的性质、动物物种/品系以及变化的大小和方向。定性描述符(例如,最小和轻微)提供了一种简洁的方式来提供病理生理相关性的额外背景,但将其归因于变化更具挑战性。定性描述符的分配通常需要一种主观的、全面的、多方面的方法,除了数值计算之外,还需要使用各种因素。由于涉及到主观性,分配给特定变化的定性严重性描述符可能因临床病理终点、物种/品系、贡献科学家和研究/项目而异。定量和定性严重性描述符可以提供补充信息,并且可以单独或组合使用。这篇观点文章主要解释了这一过程,并讨论了临床病理学家在定性严重程度描述符时考虑的注意事项和各种因素。
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引用次数: 0
Uveodermatologic Syndrome in a Laboratory Beagle Dog: Histological and Immunohistochemical Features. 实验室比格犬葡萄膜皮肤病综合征:组织学和免疫组织化学特征。
IF 1.8 4区 医学 Q3 PATHOLOGY Pub Date : 2025-08-01 Epub Date: 2025-05-15 DOI: 10.1177/01926233251339116
Giulia Tosi, Elisavet Karamanavi, Zuhal Dincer, Michela Levi

This brief communication details the clinical, macroscopic, histological, and immunohistochemical features of a spontaneous case of uveodermatologic syndrome (UDS) in a laboratory beagle dog. A bilateral and symmetrical panuveitis, rich in macrophages and T lymphocytes, with distinctive extracellular clumped or phagocytised melanin pigment granules, and Dalen-Fuchs nodules was diagnosed following occurrence of ocular symptoms and subsequent blindness in a female peripubertal 9.5-month-old beagle dog. Although no macroscopic lesions were visible in the skin, microscopic examination revealed a histiocytic and lymphocytic lichenoid dermatitis with pigmentary incontinence. UDS has not been described as a background finding in laboratory beagle dogs before, although it is a well-known immune-mediated disease in certain canine breeds. Knowledge that UDS can occur in laboratory beagle dogs involved in preclinical studies, especially ocular studies, is essential for toxicologic pathologists.

本文简要介绍了一例实验性小猎犬自发性葡萄膜皮肤病综合征(UDS)的临床、宏观、组织学和免疫组织化学特征。一只9.5月龄雌性比格犬出现眼部症状并随后失明后,诊断为双侧对称全葡萄膜炎,富含巨噬细胞和T淋巴细胞,伴有明显的细胞外团块或吞噬黑色素颗粒,并伴有Dalen-Fuchs结节。虽然肉眼未见皮肤病变,镜检显示组织细胞性和淋巴细胞性地衣样皮炎伴色素失禁。虽然UDS在某些犬种中是一种众所周知的免疫介导性疾病,但以前并未将其描述为实验室比格犬的背景发现。对于毒理学病理学家来说,了解UDS可能发生在临床前研究的实验室比格犬身上,尤其是眼部研究。
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引用次数: 0
Multiplexed siRNA Immunoassay Unveils Spatial and Quantitative Dimensions of siRNA Function, Abundance, and Localization In Vitro and In Vivo. 多重siRNA免疫分析揭示了siRNA在体外和体内功能、丰度和定位的空间和定量维度。
IF 1.8 4区 医学 Q3 PATHOLOGY Pub Date : 2025-08-01 Epub Date: 2025-01-19 DOI: 10.1177/01926233241311539
Michael Ly, Sandra Diaz-Garcia, Nathaniel Roscoe, Irina Ushach, Zhigang Hong, Monique França, Stephanie Schaffer, Tong-Yuan Yang, Mathieu Marella, Glenn Marsboom, Donna Klein, Tamar R Grossman, Vinicius Carreira, Michael Ollmann

Small interfering RNAs (siRNAs) have been successfully used as therapeutics to silence disease-causing genes when conjugated to ligands or formulated in lipid nanoparticles to target relevant cell types for efficacy while sparing other cells for safety. To support the development of new methods for delivery of siRNA therapeutics, we developed and characterized a panel of antibodies generated against chemically modified nucleotides used in therapeutic siRNA molecules, identifying a monoclonal antibody that detects a broad range of siRNA representing distinct sequences and modification patterns. By integrating this anti-siRNA antibody with additional reagents, we created a multiplex siRNA immunoassay that simultaneously quantifies siRNA uptake, trafficking, and silencing activity. Using immunohistochemistry (IHC), we applied our method on tissues from mice treated with unconjugated, GalNAc-conjugated, or cholesterol-conjugated siRNAs and quantitatively assessed the biodistribution and activity of siRNAs in various organs. In addition, we used high-content imaging (HCI) and applied our multiplex siRNA immunoassay in tissue culture to enable simultaneous quantification of siRNA uptake, activity, and intracellular colocalization with endosome markers. These methods provide a robust platform for testing nucleic acid delivery methods in vitro and in vivo, allowing precise analysis and visualization of the pharmacokinetics and pharmacodynamics of siRNA therapeutics with cellular and subcellular resolution.

小干扰rna (sirna)已被成功地用作沉默致病基因的治疗药物,当其与配体结合或在脂质纳米颗粒中配制时,可靶向相关细胞类型以获得疗效,同时保证其他细胞的安全性。为了支持siRNA治疗药物递送新方法的发展,我们开发并鉴定了一组针对用于治疗siRNA分子的化学修饰核苷酸产生的抗体,鉴定了一种单克隆抗体,该抗体可以检测代表不同序列和修饰模式的广泛siRNA。通过将这种抗siRNA抗体与其他试剂整合,我们创建了一种多重siRNA免疫分析法,可以同时量化siRNA的摄取、运输和沉默活性。使用免疫组织化学(IHC),我们将我们的方法应用于未偶联的、galnac偶联的或胆固醇偶联的sirna处理的小鼠组织,并定量评估了sirna在各器官中的生物分布和活性。此外,我们使用了高含量成像(HCI),并在组织培养中应用了多重siRNA免疫分析,以同时量化siRNA的摄取、活性和内核体标记的细胞内共定位。这些方法为体外和体内检测核酸递送方法提供了一个强大的平台,可以精确分析和可视化siRNA治疗药物的细胞和亚细胞分辨率的药代动力学和药效学。
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引用次数: 0
Digital Pathology and Artificial Intelligence Applied to Nonclinical Toxicology Pathology-The Current State, Challenges, and Future Directions. 数字病理学和人工智能在非临床毒理学病理学中的应用——现状、挑战和未来方向。
IF 1.8 4区 医学 Q3 PATHOLOGY Pub Date : 2025-08-01 Epub Date: 2025-06-03 DOI: 10.1177/01926233251340622
Gabriele Pohlmeyer-Esch, Charles Halsey, Julie Boisclair, Sripad Ram, Sarah Kirschner-Kitz, Brian Knight, Pierre Moulin, Anna-Lena Frisk

Advancements in digital pathology and artificial intelligence (AI) have enormous transformative potential for nonclinical toxicologic pathology and are already changing the ways in which pathologists work. However, due to the rapid evolution of digital pathology and AI, the toxicologic pathology community would benefit from an update on these advancements, which can be used to aid drug development. Here we identify key articles published on the use of digital pathology and AI in the field and provide current regulatory statuses and guidelines. For digital pathology, we outline the requirements for equipment, validation processes, workflows, and archiving. Challenges to achieve system interoperability and to establish harmonization through Digital Imaging and Communications in Medicine compatibility are also discussed. For AI, we highlight considerations for model development, including the determination of ground truth, problems that may arise due to bias, and how the accuracy and precision of AI algorithms can be assessed. Finally, we discuss the challenges and potential for AI-assisted toxicologic pathology, picturing a future where technology and scientific expertise work hand-in-hand to improve the quality and efficiency of nonclinical drug safety evaluation. This publication is a deliverable of the European Innovative Medicines Initiative 2 Joint Undertaking, "Bigpicture."

数字病理学和人工智能(AI)的进步对非临床毒理学病理学具有巨大的变革潜力,并且已经改变了病理学家的工作方式。然而,由于数字病理学和人工智能的快速发展,毒理学病理学界将从这些进步的更新中受益,这些进步可用于帮助药物开发。在这里,我们确定了发表的关于数字病理学和人工智能在该领域使用的关键文章,并提供了当前的监管状况和指南。对于数字病理学,我们概述了对设备、验证过程、工作流程和存档的要求。还讨论了实现系统互操作性和通过医学兼容性中的数字成像和通信建立协调的挑战。对于人工智能,我们强调了模型开发的考虑因素,包括确定基本事实、可能因偏见而产生的问题,以及如何评估人工智能算法的准确性和精度。最后,我们讨论了人工智能辅助毒理学病理学的挑战和潜力,描绘了技术和科学专业知识携手合作以提高非临床药物安全性评估质量和效率的未来。本出版物是欧洲创新药物倡议联合事业“大图景”的可交付成果。
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引用次数: 0
Deep Learning Methodology for Quantification of Normal Pancreas Structures. 用于定量正常胰腺结构的深度学习方法。
IF 1.8 4区 医学 Q3 PATHOLOGY Pub Date : 2025-08-01 Epub Date: 2025-06-16 DOI: 10.1177/01926233251341824
Zhiyong Xie, Stephane Thibault, Norimitsu Shirai, Yutian Zhan, Lindsay Tomlinson

Histopathologic evaluation plays a crucial role in assessing morphological tissue alterations in disease models and toxicology studies. Identifying small quantitative shifts in specific substructures of organs can be challenging due to the subjective nature of visual assessment and the pathologist's reliance on categorical measurements rather than continuous ones. The emergence of digital pathology and artificial intelligence (AI) provides the ability to quantify different organ substructures using automated methods. Here, we employed a deep learning method to integrate normal pancreatic substructures into an algorithm. We also included areas of abnormal pancreas in the deep learning model. Once the image analysis pipeline was developed, we tested its effectiveness on a disease model and a toxicity study. The quantitative measurements clearly differentiated between control animals and those in the disease model or treated with a test article. In the toxicity study, we observed a distinct dose-dependent change. This approach could be applied to other organs and different species.

在疾病模型和毒理学研究中,组织病理学评估在评估形态学组织改变方面起着至关重要的作用。由于视觉评估的主观性和病理学家对分类测量而不是连续测量的依赖,确定器官特定亚结构的小数量变化可能具有挑战性。数字病理学和人工智能(AI)的出现提供了使用自动化方法量化不同器官亚结构的能力。在这里,我们采用深度学习方法将正常胰腺子结构整合到算法中。我们还在深度学习模型中加入了胰腺异常区域。一旦图像分析管道被开发出来,我们就在疾病模型和毒性研究中测试了它的有效性。定量测量清楚地区分了对照动物和疾病模型中的动物或用测试品治疗的动物。在毒性研究中,我们观察到明显的剂量依赖性变化。这种方法可以应用于其他器官和不同的物种。
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引用次数: 0
Toxicologic Pathology Forum*: Opinion on the Interpretation of Statistical Significance Testing Results From Anatomic and Clinical Pathology Data in Nonclinical Safety Studies. 毒理学病理学论坛*:对非临床安全性研究中解剖和临床病理数据统计显著性检验结果的解释的意见。
IF 1.8 4区 医学 Q3 PATHOLOGY Pub Date : 2025-08-01 Epub Date: 2025-05-31 DOI: 10.1177/01926233251339113
Lila Ramaiah, Tara Arndt, Gareth Thomas, Norimitsu Shirai, Manu Sebastian, Cory Sims, Steven Bailey

Toxicologic pathologists assess large data sets from nonclinical studies to identify treatment-related effects to assist in predicting human safety hazards. Statistical testing can facilitate data interpretation by highlighting group differences that have a low probability of random occurrence based on a pre-determined P-value cut-off (eg, P < .05). While this method has been used in the interpretation of pathology data for decades, the appropriateness of utilizing statistical testing in this way has been challenged. Here, we discuss common statistical pitfalls in the analysis of toxicologic pathology data, with emphasis on clinical pathology, reaffirming that appropriate use of statistical analysis requires an understanding of (1) the parameters assessed; (2) the inherent strengths and weaknesses of the statistical method used; and (3) that appropriate interpretation of pathology data is based on the pathologist's expertise. The presence or absence of statistical significance should not supersede expert judgment but should be one of many tools used to reach a conclusion.

毒理学病理学家评估来自非临床研究的大量数据集,以确定治疗相关的影响,以帮助预测人类安全危害。统计检验可以根据预先确定的P值截止值(例如,P < 0.05)突出具有低随机发生概率的组差异,从而促进数据解释。虽然这种方法已经在病理数据的解释中使用了几十年,但以这种方式利用统计检验的适当性受到了挑战。在这里,我们讨论毒理学病理数据分析中常见的统计缺陷,重点是临床病理学,重申统计分析的适当使用需要理解(1)评估参数;(二)所采用统计方法的固有优缺点;(3)病理数据的适当解释是基于病理学家的专业知识。统计显著性的存在与否不应取代专家判断,而应是用于得出结论的众多工具之一。
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引用次数: 0
Immunotoxicology From a Pathology Perspective: A Continuing Education Course Presented at the Annual STP Meeting in Baltimore, MD, Held June 16-19, 2024. 从病理学角度看免疫毒理学:在2024年6月16日至19日在马里兰州巴尔的摩举行的STP年度会议上提出的继续教育课程。
IF 1.4 4区 医学 Q3 PATHOLOGY Pub Date : 2025-07-01 Epub Date: 2025-03-31 DOI: 10.1177/01926233251328970
Tracey L Papenfuss, Ashwini Phadnis Moghe, Lauren E Himmel, Ana Goyos, Daniel Weinstock

This article is a summary of a half-day continuing education course jointly sponsored by the Society for Toxicologic Pathology (STP) and the Health and Environmental Sciences Institute (HESI) at the annual meeting of the STP in Baltimore, MD, held June 16-19, 2024. Presenters discussed pathology, toxicology, immunotoxicology, and regulatory implications of findings in the immune system in context of development of immunomodulatory therapeutics. Interpretation of pathology findings requires knowledge of immune system morphology and function including species-specific differences and spontaneous findings in animal model systems. A weight of evidence (WoE) approach is required to integrate pathology findings and immunotoxicology assay results to assess translatability to humans. Communication and collaboration among scientists of various disciplines can be instrumental in optimal generation and interpretation of appropriate data for development of immunomodulatory therapeutics.

本文是由毒物病理学学会(STP)和健康与环境科学研究所(HESI)在2024年6月16日至19日于马里兰州巴尔的摩举行的STP年会上联合主办的为期半天的继续教育课程的总结。演讲者讨论了在免疫调节疗法发展的背景下,病理、毒理学、免疫毒理学和免疫系统发现的调控意义。病理结果的解释需要免疫系统形态学和功能的知识,包括物种特异性差异和动物模型系统的自发发现。需要证据权重(WoE)方法来整合病理发现和免疫毒理学分析结果,以评估对人类的可翻译性。不同学科的科学家之间的交流和合作有助于最佳地生成和解释适当的数据,以促进免疫调节疗法的发展。
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引用次数: 0
Toxicologic Pathology Forum*: Opinion on Addressing Gaps in INHAND Terminology for Medical Devices-A Proposal to Add New Diagnostic Nomenclature. 毒理学病理学论坛:关于解决医疗器械INHAND术语差距的意见-增加新的诊断术语的建议。
IF 1.4 4区 医学 Q3 PATHOLOGY Pub Date : 2025-07-01 Epub Date: 2025-04-05 DOI: 10.1177/01926233251331580
JoAnn C L Schuh, Lyn M Wancket, Brad Bolon, Kathleen A Funk, Nicole Kirchhof, Joanna M Rybicka

Historically, safety and efficacy assessment of medical devices began and has continued as standards under the International Organization for Standardization (ISO) rather than under regulatory agency guidelines applied to developing other biomedical product classes. These parallel and unequal pathways have led to multiple and substantive differences in methods and endpoints to determine adverse biological responses among therapeutic classes. Toxicologic pathologists with medical device experience consider standardized nomenclature and diagnostic criteria for medical devices and device-containing combination products as a critical unmet need for nonclinical pathology evaluations. The International Harmonization of Nomenclature and Diagnostic Criteria for Lesions (INHAND) initiative has established globally accepted terminology for proliferative and nonproliferative lesions in various laboratory animal species. Experienced pathologists have identified that some existing INHAND terms for rodents and particularly nonrodents are already used or can be modified for use in medical device studies, but new terms for diagnostic features unique to medical device studies are needed to close gaps in existing INHAND nomenclature. The best approach to establishing appropriate INHAND terms for medical devices (and by extension, device-containing combination products) will be to develop and implement suitable terminology (modified and new, as warranted) to address unmet needs for this distinctive therapeutic class.

从历史上看,医疗器械的安全性和有效性评估开始并继续作为国际标准化组织(ISO)的标准,而不是应用于开发其他生物医学产品类别的监管机构指南。这些平行和不平等的途径导致在确定不同治疗类别的不良生物反应的方法和终点方面存在多种实质性差异。具有医疗器械经验的毒理学病理学家认为,医疗器械和包含器械的组合产品的标准化命名和诊断标准是非临床病理学评估的关键未满足需求。国际协调病变命名和诊断标准(INHAND)倡议为各种实验动物物种的增殖性和非增殖性病变建立了全球公认的术语。经验丰富的病理学家已经发现,一些现有的用于啮齿动物,特别是非啮齿动物的INHAND术语已经用于或可以修改用于医疗器械研究,但是需要新的用于医疗器械研究的诊断特征的术语来弥补现有的INHAND命名法中的空白。为医疗器械(以及延伸到包含器械的组合产品)建立适当的INHAND术语的最佳方法将是开发和实施适当的术语(根据需要修改和新的),以解决这一独特治疗类别未满足的需求。
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引用次数: 0
Toxicologic Pathology Forum*: Opinion on New Technologies and Trends Disrupting Drug Discovery and Development: How Can the Next Generation of Toxicologic Pathologists Be Prepared for Evolving Roles? 毒理学病理学论坛*:新技术和趋势对药物发现和开发的影响:下一代毒理学病理学家如何为不断变化的角色做好准备?
IF 1.4 4区 医学 Q3 PATHOLOGY Pub Date : 2025-07-01 Epub Date: 2025-03-31 DOI: 10.1177/01926233251321805
Rebecca Kohnken, Lauren Himmel, Magali Guffroy, Eric A G Blomme

The pace of technological innovation in the pharmaceutical industry, like in many other sectors, is accelerating rapidly. This is not only reshaping how pharmaceutical Research and Development (R&D) is conducted (e.g., introduction of novel models, endpoints, and instrumentation) but also influencing the types of therapeutic modalities being developed. In addition, societal and regulatory expectations have evolved to emphasize approaches that align with the 4Rs principles (Replacement, Reduction, Refinement, and Responsibility) and to encourage the replacement of animal testing with new approach methods (NAMs) through the FDA Modernization Act 2.0. While innovation, societal changes, and regulatory evolution are not new, what stands out is the unprecedented speed and scale at which these transformations are occurring. This acceleration is fueled predominantly by groundbreaking technological advancements (e.g., artificial intelligence, deep learning, communication tools, and digital pathology) in the context of rapidly changing societal dynamics such as globalization, social networking, and the increase in remote working. Given these potentially disruptive changes, it is essential to consider how toxicologic pathologists need to adapt. More importantly, how can they leverage these advancements to contribute even more significantly to the discovery and development of novel, safe, and effective medicines? In essence, what types of toxicologic pathologists will the pharmaceutical industry require in the future?

与许多其他部门一样,制药行业的技术创新步伐正在迅速加快。这不仅重塑了药物研究与开发(R&D)的开展方式(例如,引入新的模型、终点和仪器),而且影响了正在开发的治疗模式的类型。此外,社会和监管期望已经发展到强调与4Rs原则(替代,减少,改进和责任)相一致的方法,并通过FDA现代化法案2.0鼓励用新方法(NAMs)替代动物试验。虽然创新、社会变革和监管演变并不新鲜,但这些变革发生的速度和规模都是前所未有的。这种加速主要是由全球化、社交网络和远程工作等快速变化的社会动态背景下的突破性技术进步(例如人工智能、深度学习、通信工具和数字病理学)所推动的。鉴于这些潜在的破坏性变化,必须考虑毒理学病理学家需要如何适应。更重要的是,他们如何利用这些进步,为发现和开发新颖、安全、有效的药物做出更大的贡献?从本质上讲,制药行业未来需要什么类型的毒理学病理学家?
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引用次数: 0
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