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Novel Hina alleles created by genome editing increase grain hardness and reduce grain width in barley. 通过基因组编辑产生的新型Hina等位基因增加了大麦籽粒硬度,减小了籽粒宽度。
IF 3 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2022-12-01 DOI: 10.1007/s11248-022-00324-8
Yanyan Jiang, Jianmin Li, Baolong Liu, Dong Cao, Yuan Zong, Yanzi Chang, Yun Li

The hordoindolina genes (Hina and Hinb) are believed to play critical roles in barley (Hordeum vulgare L.) grain texture. In this study, we created novel alleles of the Hina gene using CRISPR/Cas9 (Clustered regularly inter spaced short palindromic repeat-associated protein, CRISPR-Cas) genome editing. Mutagenesis of single bases in these novel alleles led to loss of Hina protein function in edited lines. The grain hardness index of hina mutants was 95.5 on average, while that of the wild type was only 53.7, indicating successful conversion of soft barley into hard barley. Observation of cross-sectional grain structure using scanning electron microscopy revealed different adhesion levels between starch granules and protein matrix. Starch granules were loose and separated from the protein matrix in the wild type, but deeply trapped and tightly integrated with the protein matrix in hina02 mutants. In addition, the grain width and thousand-grain weight of the hina02 mutant were significantly lower than those of the wild type.

hordoindolina基因(Hina和Hinb)被认为在大麦(Hordeum vulgare L.)籽粒结构中起着关键作用。在这项研究中,我们使用CRISPR/Cas9 (Clustered regularly interspaced short palindromic repeat-associated protein, CRISPR- cas)基因组编辑技术创建了新的Hina基因等位基因。这些新等位基因的单碱基突变导致编辑细胞系中Hina蛋白功能的丧失。hina突变体的硬度指数平均为95.5,而野生型的硬度指数仅为53.7,表明软质大麦成功转化为硬质大麦。扫描电镜观察淀粉颗粒的横截面结构,发现淀粉颗粒与蛋白质基质的黏附程度不同。在野生型中,淀粉颗粒松散,与蛋白质基质分离,而在hina02突变体中,淀粉颗粒被深度捕获并与蛋白质基质紧密结合。此外,突变体hina02的粒宽和千粒重也显著低于野生型。
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引用次数: 0
Points to consider in seeking biosafety approval for research, testing, and environmental release of experimental genetically modified biocontrol products during research and development. 在研究和开发过程中,为实验性转基因生物控制产品的研究、测试和环境释放申请生物安全批准时应考虑的要点。
IF 2.7 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2022-12-01 Epub Date: 2022-10-04 DOI: 10.1007/s11248-022-00311-z
W K Tonui, V Ahuja, C J Beech, J B Connolly, B Dass, D C M Glandorf, S James, J N Muchiri, C F Mugoya, E A Okoree, H Quemada, J Romeis

Novel genetically modified biological control products (referred to as "GM biocontrol products") are being considered to address a range of complex problems in public health, conservation, and agriculture, including preventing the transmission of vector-borne parasitic and viral diseases as well as the spread of invasive plant and animal species. These interventions involve release of genetically modified organisms (GMOs) into the environment, sometimes with intentional dissemination of the modification within the local population of the targeted species, which presents new challenges and opportunities for regulatory review and decision-making. Practices developed for GMOs, primarily applied to date for GM crops may need to be adapted to accommodate different types of organisms, such as insects, and different technologies, such as gene drive. Developers of new GM biocontrol products would benefit from an early understanding of safety data and information that are likely to be required within the regulatory dossier for regulatory evaluation and decision making. Here a generalizable tool drawing from existing GM crop dossier requirements, forms, and relevant experience is proposed to assist researchers and developers organize and plan their research and trialing. This tool requires considering specifics of each investigational product, their intended use, and country specific requirements at various phases of potential product development, from laboratory research through contained field testing and experimental release into the environment. This may also be helpful to risk assessors and regulators in supporting their systematic and rigorous evaluation of new biocontrol products.

人们正在考虑用新的转基因生物控制产品(简称 "转基因生物控制产品")来解决公共卫生、自然保护和农业方面的一系列复杂问题,包括预防病媒传播的寄生虫病和病毒性疾病以及入侵动植物物种的传播。这些干预措施涉及向环境中释放转基因生物(GMOs),有时是有意在目标物种的当地种群中传播转基因生物,这为监管审查和决策带来了新的挑战和机遇。为转基因生物制定的、迄今主要应用于转基因作物的做法可能需要进行调整,以适应不同类型的生物(如昆虫)和不同的技术(如基因驱动)。新的转基因生物控制产品的开发者将受益于对安全数据和信息的早期了解,这些数据和信息可能是监管评估和决策所需的监管档案。在此,我们从现有的转基因作物档案要求、表格和相关经验中提出了一个可通用的工具,以帮助研究人员和开发人员组织和规划他们的研究和试验。该工具要求在潜在产品开发的各个阶段,从实验室研究到包含田间试验和试验性环境释放,考虑每种研究产品的具体情况、预期用途和国家具体要求。这也有助于风险评估人员和监管人员支持他们对新的生物控制产品进行系统和严格的评估。
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引用次数: 0
Abstracts of the 17th Transgenic Technology Meeting (TT2022) : Helsinki, Finland, September 17-20, 2022. 第17届转基因技术会议(TT2022):芬兰赫尔辛基,2022年9月17-20日。
IF 3 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2022-11-01 DOI: 10.1007/s11248-022-00327-5
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引用次数: 0
Improvement of recombinant miraculin production in transgenic tomato by crossbreeding-based genetic background modification. 利用基于杂交育种的遗传背景修饰改进转基因番茄中重组奇迹蛋白的生产。
IF 3 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2022-10-01 Epub Date: 2022-08-17 DOI: 10.1007/s11248-022-00320-y
Kyoko Hiwasa-Tanase, Suzuno Ohmura, Natsumi Kitazawa, Azusa Ono, Takeshi Suzuki, Hiroshi Ezura

An important optimization step in plant-based recombinant protein production systems is the selection of an appropriate cultivar after a potential host has been determined. Previously, we have shown that transgenic tomatoes of the variety 'Micro-Tom' accumulate incredibly high levels of miraculin (MIR) due to the introduction of MIR gene controlled by a CaMV35S promoter and a heat-shock protein terminator. However, 'Micro-Tom' is unsuitable for commercial production of MIR as it is a dwarf cultivar characterized by small-sized fruit and poor yield. Here, we used the crossbreeding approach to transfer the high MIR accumulation trait of transgenic 'Micro-Tom' tomatoes to 'Natsunokoma' and 'Aichi First', two commercial cultivars producing medium and large fruit sizes, respectively. Fruits of the resultant crossbred lines were larger (~ 95 times), but their miraculin accumulation levels (~ 1,062 μg/g fresh mass) were comparable to the donor cultivar, indicating that the high miraculin accumulation trait was preserved regardless of fruit size or cultivar. Further, the transferred trait resulted in a 3-4 fold increase in overall miraculin production than that of the previously reported line 5B. These findings demonstrate the effectiveness of crossbreeding in improving MIR production in tomatoes and could pave the way for a more efficient production of recombinant proteins in other plants.

在以植物为基础的重组蛋白生产系统中,一个重要的优化步骤是在确定潜在寄主后选择合适的品种。之前,我们已经证明,由于引入了由CaMV35S启动子和热休克蛋白终止子控制的MIR基因,“Micro-Tom”品种的转基因番茄积累了令人难以置信的高水平的奇迹蛋白(MIR)。但是,“Micro-Tom”是矮秆品种,果实小,产量低,不适合MIR的商业化生产。本研究采用杂交育种的方法,将转基因“微型番茄”的高MIR积累性状转移到“Natsunokoma”和“爱知第一”两个商品品种上,这两个品种的果实大小分别为中、大。结果表明,所合成的杂交种果实较大(约95倍),但其奇迹素积累水平(约1062 μg/g鲜质量)与供体品种相当,表明无论果实大小或品种,都保持了奇迹素高积累的性状。此外,与先前报道的品系5B相比,该转移性状的总奇迹蛋白产量增加了3-4倍。这些发现证明了杂交在提高番茄MIR产量方面的有效性,并可能为在其他植物中更有效地生产重组蛋白铺平道路。
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引用次数: 2
Correction: Larval mosquito management and risk to aquatic ecosystems: A comparative approach including current tactics and gene-drive Anopheles techniques. 更正:幼虫蚊子的管理和对水生生态系统的风险:一种比较方法,包括当前的策略和基因驱动按蚊技术。
IF 3 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2022-10-01 DOI: 10.1007/s11248-022-00317-7
Robert K D Peterson, Marni G Rolston
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引用次数: 0
The human EF1a promoter does not provide expression of the transgene in mice. 人EF1a启动子不提供转基因在小鼠中的表达。
IF 3 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2022-10-01 Epub Date: 2022-08-12 DOI: 10.1007/s11248-022-00319-5
Nariman Battulin, Alexey Korablev, Anastasia Ryzhkova, Alexander Smirnov, Evelyn Kabirova, Anna Khabarova, Timofey Lagunov, Irina Serova, Oleg Serov

In this work, we set out to create mice susceptible to the SARS-CoV-2 coronavirus. To ensure the ubiquitous expression of the human ACE2 gene we used the human EF1a promoter. Using pronuclear microinjection of the transgene construct, we obtained six founders with the insertion of the EF1a-hACE2 transgene, from which four independent mouse lines were established. Unfortunately, only one line had low levels of hACE2 expression in some organs. In addition, we did not detect the hACE2 protein in primary lung fibroblasts from any of the transgenic lines. Bisulfite sequencing analysis revealed that the EF1a promoter was hypermethylated in the genomes of transgenic animals. Extensive analysis of published works about transgenic animals indicated that EF1a transgenic constructs are frequently inactive. Thus, our case cautions against using the EF1a promoter to generate transgenic animals, as it is prone to epigenetic silencing.

在这项工作中,我们开始创造对SARS-CoV-2冠状病毒敏感的小鼠。为了确保人类ACE2基因的普遍表达,我们使用了人类EF1a启动子。通过原核微注射转基因构建体,我们获得了6个EF1a-hACE2转基因的建立者,并由此建立了4个独立的小鼠系。不幸的是,只有一个细胞系在某些器官中有低水平的hACE2表达。此外,我们没有在任何转基因系的原代肺成纤维细胞中检测到hACE2蛋白。亚硫酸氢盐测序分析显示,转基因动物基因组中EF1a启动子被超甲基化。对已发表的转基因动物的大量分析表明,EF1a转基因构建体通常是无活性的。因此,我们的案例提醒我们不要使用EF1a启动子来产生转基因动物,因为它容易导致表观遗传沉默。
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引用次数: 1
Larval mosquito management and risk to aquatic ecosystems: A comparative approach including current tactics and gene-drive Anopheles techniques. 蚊幼虫管理和水生生态系统风险:包括当前策略和基因驱动按蚊技术的比较方法。
IF 3 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2022-10-01 Epub Date: 2022-07-07 DOI: 10.1007/s11248-022-00315-9
Robert K D Peterson, Marni G Rolston

Genetic engineering of mosquitoes represents a promising tactic for reducing human suffering from malaria. Gene-drive techniques being developed that suppress or modify populations of Anopheles gambiae have the potential to be used with, or even possibly obviate, microbial and synthetic insecticides. However, these techniques are new and therefore there is attendant concern and uncertainty from regulators, policymakers, and the public about their environmental risks. Therefore, there is a need to assist decision-makers and public health stewards by assessing the risks associated with these newer mosquito management tactics so the risks can be compared as a basis for informed decision making. Previously, the effect of gene-drive mosquitoes on water quality in Africa was identified as a concern by stakeholders. Here, we use a comparative risk assessment approach for the effect of gene-drive mosquitoes on water quality in Africa. We compare the use of existing larvicides and the proposed genetic techniques in aquatic environments. Based on our analysis, we conclude that the tactic of gene-drive Anopheles for malaria management is unlikely to result in risks to aquatic environments that exceed current tactics for larval mosquitoes. As such, these new techniques would likely comply with currently recommended safety standards.

蚊子的基因工程代表了一种减少人类疟疾痛苦的有希望的策略。正在开发的抑制或修饰冈比亚按蚊种群的基因驱动技术有可能与微生物和合成杀虫剂一起使用,甚至可能消除它们。然而,这些技术都是新技术,因此监管机构、政策制定者和公众对其环境风险的担忧和不确定性随之而来。因此,有必要通过评估与这些新的蚊子管理策略相关的风险来协助决策者和公共卫生管理人员,以便将风险进行比较,作为知情决策的基础。以前,基因驱动蚊子对非洲水质的影响被利益相关者确定为一个关注的问题。在这里,我们使用了一种比较风险评估方法来评估基因驱动蚊子对非洲水质的影响。我们比较了现有的杀幼虫剂和拟议的遗传技术在水生环境中的使用。根据我们的分析,我们得出结论,基因驱动按蚊用于疟疾管理的策略不太可能导致对水生环境的风险超过目前针对幼虫蚊子的策略。因此,这些新技术很可能符合目前推荐的安全标准。
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引用次数: 4
Conversion of sheath blight susceptible indica and japonica rice cultivars into moderately resistant through expression of antifungal β-1,3-glucanase transgene from Trichoderma spp. 通过表达木霉抗真菌β-1,3-葡聚糖酶基因将易受纹枯病影响的籼稻和粳稻品种转化为中等抗性品种。
IF 3 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2022-10-01 Epub Date: 2022-08-09 DOI: 10.1007/s11248-022-00318-6
Shivali Pathania, Jagjeet Singh Lore, Anu Kalia, Ajinder Kaur, Manveer Sharma, Gurjit Singh Mangat, Jagdeep Singh Sandhu

Rice is an important food crop for three billion people worldwide. The crop is vulnerable to several diseases. Sheath blight caused by fungal pathogen Rhizoctonia solani is a significant threat to rice cultivation accounting for up to 50% yield losses. The pathogen penetrates leaf blades and sheaths, leading to plant necrosis; and major disease resistance gene against the pathogen is not available. This study describes development of sheath blight resistant transgenic indica and japonica rice cultivars through introduction of antifungal β-1,3-glucanase transgene cloned from Trichoderma. The transgene integration and expression in transformed T0 rice plants was examined by PCR, RT-PCR, qRT-PCR demonstrating up to 5-fold higher expression as compared to non-transgenic plants. The bioassay of T0, T1 and homozygous T2 progeny plants with virulent R. solani isolate revealed that plants carrying high level of β-1,3-glucanase expression displayed moderately resistant reaction to the pathogen. The optical micrographs of leaf sheath cells from moderately resistant plant after pathogen inoculation displayed presence of a few hyphae with sparse branching; on the contrary, pathogen hyphae in susceptible non-transgenic plant cells were present in abundance with profuse hyphal branching and forming prominent infection cushions. The disease severity in T2 progeny plants was significantly less as compared to non-transgenic plants confirming role of β-1,3-glucanase in imparting resistance.

水稻是全球30亿人口的重要粮食作物。这种作物易受几种病害的侵害。由真菌病原菌索拉丝核菌引起的纹枯病是水稻栽培的重大威胁,可造成高达50%的产量损失。病原菌渗入叶片和鞘,导致植物坏死;目前还没有针对病原菌的主要抗病基因。本研究通过引入从木霉中克隆的抗真菌β-1,3-葡聚糖酶基因,来开发抗纹枯病转基因籼稻和粳稻品种。通过PCR、RT-PCR和qRT-PCR检测了转基因水稻植株的整合和表达,结果显示转基因水稻植株的表达量比非转基因植株高5倍。对毒力极强的茄茄疫病毒株的T0、T1和T2纯合子植株进行生物测定,结果表明,高表达β-1,3-葡聚糖酶的植株对该病原菌表现出中度抗性反应。中等抗性植物接种病原菌后叶鞘细胞光学显微镜显示菌丝较少,分枝稀疏;而在非转基因易感植物细胞中,病原菌菌丝大量存在,菌丝分支丰富,形成明显的感染垫。与非转基因植株相比,T2后代植株的疾病严重程度显著降低,证实了β-1,3-葡聚糖酶在传递抗性中的作用。
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引用次数: 2
Biochemical and clinical studies of putative allergens to assess what distinguishes them from other non-allergenic proteins in the same family. 对假定的过敏原进行生化和临床研究,以评估它们与同一家族中其他非过敏原蛋白的区别。
IF 3 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2022-10-01 Epub Date: 2022-08-08 DOI: 10.1007/s11248-022-00316-8
Kevin C Glenn, Andre Silvanovich, Soon Goo Lee, Aron Allen, Stephanie Park, S Eliza Dunn, Colton Kessenich, Chen Meng, John L Vicini, Joseph M Jez

Many protein families have numerous members listed in databases as allergens; however, some allergen database entries, herein called "orphan allergens", are members of large families of which all other members are not allergens. These orphan allergens provide an opportunity to assess whether specific structural features render a protein allergenic. Three orphan allergens [Cladosporium herbarum aldehyde dehydrogenase (ChALDH), Alternaria alternata ALDH (AaALDH), and C. herbarum mannitol dehydrogenase (ChMDH)] were recombinantly produced and purified for structure characterization and for clinical skin prick testing (SPT) in mold allergic participants. Examination of the X-ray crystal structures of ChALDH and ChMDH and a homology structure model of AaALDH did not identify any discernable epitopes that distinguish these putative orphan allergens from their non-allergenic protein relatives. SPT results were aligned with ChMDH being an allergen, 53% of the participants were SPT (+). AaALDH did not elicit SPT reactivity above control proteins not in allergen databases (i.e., Psedomonas syringae indole-3-acetaldehyde dehydrogenase and Zea mays ALDH). Although published results showed consequential human IgE reactivity with ChALDH, no SPT reactivity was observed in this study. With only one of these three orphan allergens, ChMDH, eliciting SPT(+) reactions consistent with the protein being included in allergen databases, this underscores the complicated nature of how bioinformatics is used to assess the potential allergenicity of food proteins that could be newly added to human diets and, when needed, the subsequent clinical testing of that bioinformatic assessment.Trial registration number and date of registration AAC-2017-0467, approved as WIRB protocol #20172536 on 07DEC2017 by WIRB-Copernicus (OHRP/FDA Registration #: IRB00000533, organization #: IORG0000432).

许多蛋白质家族有许多成员在数据库中被列为过敏原;然而,一些过敏原数据库条目,这里称为“孤儿过敏原”,是大家庭的成员,所有其他成员都不是过敏原。这些孤儿过敏原提供了一个机会来评估特定的结构特征是否使蛋白质过敏。重组制备并纯化了3种孤儿过敏原[枝孢霉醛脱氢酶(ChALDH)、交替孢霉醛脱氢酶(AaALDH)和草孢霉甘露醇脱氢酶(ChMDH)],用于霉菌过敏参与者的结构表征和临床皮肤点刺试验(SPT)。对ChALDH和ChMDH的x射线晶体结构和AaALDH的同源结构模型的检查没有发现任何可识别的表位,将这些假定的孤儿过敏原与其非过敏性蛋白亲戚区分开。SPT结果与ChMDH是过敏原一致,53%的参与者是SPT(+)。AaALDH不会引起SPT反应性高于非过敏原数据库中的对照蛋白(即丁香假单胞菌吲哚-3-乙醛脱氢酶和Zea mays ALDH)。虽然已发表的结果显示了相应的人IgE与ChALDH的反应性,但在本研究中未观察到SPT的反应性。在这三种孤儿过敏原中,只有ChMDH引起了与过敏原数据库中包含的蛋白质一致的SPT(+)反应,这强调了如何使用生物信息学来评估可新添加到人类饮食中的食物蛋白质的潜在致敏性以及在需要时对该生物信息学评估的后续临床测试的复杂性。试验注册号和注册日期AAC-2017-0467,于2017年12月7日由WIRB-哥白尼批准为WIRB协议#20172536 (OHRP/FDA注册号:IRB00000533,组织编号:IORG0000432)。
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引用次数: 0
Genetic quality: a complex issue for experimental study reproducibility. 基因质量:实验研究可重复性的复杂问题。
IF 2.7 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2022-10-01 Epub Date: 2022-06-25 DOI: 10.1007/s11248-022-00314-w
Atsushi Yoshiki, Gregory Ballard, Ana V Perez

Laboratory animal research involving mice, requires consideration of many factors to be controlled. Genetic quality is one factor that is often overlooked but is essential for the generation of reproducible experimental results. Whether experimental research involves inbred mice, spontaneous mutant, or genetically modified strains, exercising genetic quality through careful breeding, good recordkeeping, and prudent quality control steps such as validation of the presence of mutations and verification of the genetic background, will help ensure that experimental results are accurate and that reference controls are representative for the particular experiment. In this review paper, we will discuss various techniques used for the generation of genetically altered mice, and the different aspects to be considered regarding genetic quality, including inbred strains and substrains used, quality check controls during and after genetic manipulation and breeding. We also provide examples for when to use the different techniques and considerations on genetic quality checks. Further, we emphasize on the importance of establishing an in-house genetic quality program.

涉及小鼠的实验动物研究需要考虑许多需要控制的因素。遗传质量是一个经常被忽视的因素,但它对产生可重复的实验结果至关重要。无论实验研究涉及近交系小鼠、自发突变小鼠还是转基因品系,通过精心育种、良好记录和审慎的质量控制步骤(如验证是否存在突变和验证遗传背景)来保证遗传质量,都将有助于确保实验结果的准确性,以及参考对照对特定实验的代表性。在这篇综述论文中,我们将讨论用于产生基因改变小鼠的各种技术,以及在基因质量方面需要考虑的不同方面,包括使用的近交系和亚系、基因操作和育种期间及之后的质量检查控制。我们还举例说明了何时使用不同的技术以及基因质量检查的注意事项。此外,我们还强调了建立内部基因质量计划的重要性。
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引用次数: 0
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Transgenic Research
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