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Sonication-assisted Rhizobium radiobacter-mediated genetic transformation of Indian Lotus (Nelumbo nucifera Gaertn.). 超声辅助放射根瘤菌介导的印度莲遗传转化。
IF 2.7 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-01-07 DOI: 10.1007/s11248-024-00427-4
Rita Verma, Anshu Sahu, Rajan Kumar Gupta, Indraneel Sanyal

This study aimed to develop a reliable and efficient genetic transformation method for the ornamental Indian Lotus (Nelumbo nucifera Gaertn.) using the sonication-assisted Rhizobium radiobacter-mediated transformation technique. To conduct the transformation, shoot apical meristem explants were infected with Rhizobium radiobacter (synonym Agrobacterium tumefaciens) strain LBA 4404 containing a binary vector pBI121 that harbours the GUS reporter gene (uidA) and kanamycin resistance gene nptII for plant selection. To improve the transformation efficiency, we optimized parameters such as bacterial cell density, sonication duration, infection time, co-cultivation duration, acetosyringone concentration, cefotaxime, and kanamycin concentrations. Sonication treatment at 42 kHz for 90 s recorded the highest transformation efficiency. The selection of regenerated plantlets was performed on a kanamycin-supplemented selection medium. The putative transformants showed GUS expression in the leaves and petioles. The presence of the GUS gene was also confirmed in the putative transformants through PCR, with the appearance of the expected amplicon size of 520 bp. The presence of nptII was confirmed by PCR in the putatively transformed plants with an amplicon size of 530 bp. The maximum regeneration frequency obtained was 72.66%, and the highest transformation efficiency achieved was 9.0% in the Indian Lotus.

本研究旨在建立一种可靠、高效的观赏印度莲(Nelumbo nucifera Gaertn.)的超声辅助根瘤菌介导遗传转化技术。进行转换,顶端分生组织外植体感染了根瘤菌radiobacter(同义词根癌土壤杆菌)应变LBA 4404包含一个二进制向量pBI121港口GUS报告基因(uidA)和卡那霉素抗性基因nptII植物的选择。为了提高转化效率,我们优化了细菌细胞密度、超声时间、感染时间、共培养时间、乙酰丁香酮浓度、头孢噻肟浓度和卡那霉素浓度等参数。在42 kHz下进行90 s的超声处理记录了最高的转换效率。再生植株的选择在卡那霉素补充的选择培养基上进行。推定的转化体在叶片和叶柄中表达GUS。通过PCR也证实了GUS基因在假定的转化子中的存在,预期扩增子大小为520 bp。nptII的存在经PCR证实,扩增子大小为530 bp。在印度莲中获得的最大再生频率为72.66%,最高转化效率为9.0%。
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引用次数: 0
Transgenic overexpression of UDP glycosyltransferase gene UGT41A3 induces resistance to nucleopolyhedrovirus in Bombyx mori. UDP糖基转移酶基因UGT41A3的转基因过表达诱导家蚕对核多角体病毒的抗性
IF 2 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-12-30 DOI: 10.1007/s11248-024-00422-9
Chunying Gong, Junwen Ai, Yong Liu, Xingjian He, Hong Xue, Chaohua Jia, Zhuohua Chen, Hanfu Xu, Rongpeng Liu, Yong Yang

Bombyx mori nuclear polyhedrosis, caused by B. mori nucleopolyhedrovirus (BmNPV), threatens sericulture seriously. To explore strategies for controlling it, the UDP glycosyltransferase gene UGT41A3 (BmUGT41A3) was targeted. UGT is involved in exogenous substances detoxification and endogenous biomass regulation in insects. Early embryos of the BmNPV-sensitive variety 'HYB' were used to obtain the transgenic line HYB-UGT41A3, overexpressing BmUGT41A3 under the IE1 promoter. qPCR results revealed that, compared with the wild-type control 'HYB', BmUGT41A3 was upregulated during the individual developmental stages of HYB-UGT41A3 from silkworm eggs to fifth-instar larvae; peak expression was observed in the third-instar larvae, which presented the most significantly upregulated expression. Individual-tissues qPCR results revealed that BmUGT41A3 expression was highest in the hemocytes of HYB-UGT41A3, followed by the midgut, whereas expression in HYB was very low. Gradient feeding of BmNPV on HYB-UGT41A3 and control 'HYB' larvae on the first day of the second-instar stage. The results revealed that the LC50 of HYB-UGT41A3 reached 4.040 × 107 particles/mL, which was 20-fold greater than that of HYB. The decrease in the BmNPV load was more significant in HYB-UGT41A3 than in HYB at 48 h after viral inoculation. These results indicate BmUGT41A3 overexpression inhibits BmNPV proliferation and improve resistance to BmNPV in B. mori.

家蚕核型多角体病是由家蚕核型多角体病毒(BmNPV)引起的,严重威胁着桑蚕养殖业。为探索其调控策略,以UDP糖基转移酶基因UGT41A3 (BmUGT41A3)为靶点。UGT参与昆虫体内外源物质解毒和内源生物量调节。利用bmnpv敏感品种“HYB”的早期胚胎,获得了在IE1启动子下过表达BmUGT41A3的转基因系HYB- ugt41a3。qPCR结果显示,与野生型对照‘HYB’相比,HYB- ugt41a3从蚕卵到5龄幼虫的个体发育阶段,BmUGT41A3上调;3龄幼虫表达量最高,表达量上调最显著。个体组织qPCR结果显示,BmUGT41A3在HYB- ugt41a3的血细胞中表达最高,其次是中肠,而在HYB中的表达非常低。二龄第1天BmNPV对HYB- ugt41a3和对照“HYB”幼虫梯度投食。结果表明,HYB- ugt41a3的LC50为4.040 × 107粒/mL,是HYB的20倍。在病毒接种后48 h, HYB- ugt41a3的BmNPV载量比HYB的下降更为显著。上述结果表明,BmUGT41A3过表达可抑制家蚕BmNPV的增殖,提高家蚕对BmNPV的抗性。
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引用次数: 0
Overexpression of NAC transcription factors from Eremopyrum triticeum promoted abiotic stress tolerance. 小麦中NAC转录因子的过表达促进了非生物胁迫的耐受性。
IF 2 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-12-30 DOI: 10.1007/s11248-024-00428-3
Xue-Ni Zhong, Jun-Jie Peng, Meng-Yao Wang, Xiu-Li Yang, Li Sun

Eremopyrum triticeum is a typical spring ephemeral species, which in China mainly distributed in the desert regions of northern Xinjiang, and play an important role in the desert ecosystems. E. triticeum has several adaptive characteristics such as short growth rhythms, high photosynthetic efficiency, high seed production, drought and salt resistance. However, the molecular regulatory mechanism of E. triticeum in responses to abiotic stress resistance is still unknown. In this study, two NAC-like transcription factor-encoding genes, EtNAC1 and EtNAC2, were isolated from E. triticeum. The predicted EtNAC1 and EtNAC2 proteins possess a typical NAC DNA-binding domain at the N-terminal region. The qRT-PCR analysis showed that EtNAC1 and EtNAC2 were highly expressed in mature roots of E. triticeum, and were significantly up-regulated under drought, high salt and abscisic acid (ABA) stresses. Subcellular localization analysis in onion epidermal cells revealed that EtNAC1 and EtNAC2 were located in the nucleus. Expression of EtNAC1 and EtNAC2 in yeast cells improved the survival rate of yeast under low temperature, H2O2, high drought and salt stresses. Overexpression of EtNAC1 and EtNAC2 in Arabidopsis thaliana conferred enhanced tolerance to drought and salt stresses, increased ABA sensitivity, and transgenic plants showed higher proline (Pro) content, but lower malondialdehyde content, lower chlorophyll leaching, lower water loss rate and stomatal aperture (width/length) than WT plants. In conclusion, EtNAC1 and EtNAC2 play important roles in abiotic stress responses of E. triticeum, which might have significant potential in crop molecular breeding for abiotic stress tolerance.

小麦(Eremopyrum triticeum)是一种典型的春季短命物种,在中国主要分布于新疆北部荒漠地区,在荒漠生态系统中起着重要作用。小麦具有生长节律短、光合效率高、高产、抗旱、耐盐等适应性特点。然而,小麦对非生物胁迫抗性的分子调控机制尚不清楚。本研究从小麦中分离到两个nac样转录因子编码基因EtNAC1和EtNAC2。预测的EtNAC1和EtNAC2蛋白在n端区域具有典型的NAC dna结合域。qRT-PCR分析显示,EtNAC1和EtNAC2在小麦成熟根中高表达,在干旱、高盐和ABA胁迫下表达量显著上调。洋葱表皮细胞的亚细胞定位分析表明,EtNAC1和EtNAC2位于细胞核内。EtNAC1和EtNAC2在酵母细胞中的表达提高了酵母在低温、H2O2、高干旱和高盐胁迫下的存活率。EtNAC1和EtNAC2在拟南芥中过表达,增强了对干旱和盐胁迫的耐受性,增加了ABA敏感性,与WT相比,转基因植株的脯氨酸(Pro)含量更高,丙二醛含量更低,叶绿素淋失率更低,水分流失率和气孔直径(宽度/长度)更低。综上所述,EtNAC1和EtNAC2在小麦非生物胁迫响应中发挥重要作用,在作物非生物抗性分子育种中具有重要的应用潜力。
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引用次数: 0
Interplay between Agrobacterium T-DNA and backbone DNA in transgenic plant cells. 农杆菌T-DNA与主链DNA在转基因植物细胞中的相互作用。
IF 2 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-12-30 DOI: 10.1007/s11248-024-00424-7
Peng Xu, Shaojuan Lai, Bo Yin, Chenyu Yao, Xiaolin Gu, Jilei Huang, Yufei Hu

Agrobacterium-mediated transformation of plants often results in the integration of multiple copies of T-DNA and backbone DNA from binary vectors into the host genome. However, the interplay between T-DNA and backbone DNA remains elusive. In this study, 70.8% of T1 Arabidopsis transformants exhibited integration of both T-DNA and backbone DNA, and no cases of only backbone integration were observed. To elucidate the integration patterns, we employed bulk-genome resequencing in Arabidopsis and identified 20 integration sites across 10 T1 transgenic plants, most of which were flanked by left borders of T-DNA at both ends. On average, each integration site contained 6.3 copies of T-DNA and 2.65 copies of backbone DNA. The junction structures between T-DNA and the backbone were highly variable, revealing a previously underappreciated frequency of readthrough at both the left and right borders. Transient expression studies in Nicotiana benthamiana leaves demonstrated that T-DNA and backbone DNA were simultaneously transferred into transformed cells, although the backbone DNA had lower copy numbers than T-DNA. These findings suggest a close relationship between T-DNA and backbone DNA during their transfer and integration, thus offering new insights into the mechanism underlying Agrobacterium-mediated transformation.

农杆菌介导的植物转化通常导致来自二进制载体的T-DNA和主干DNA的多个拷贝整合到宿主基因组中。然而,T-DNA和主干DNA之间的相互作用仍然难以捉摸。在本研究中,70.8%的T1拟南芥转化子同时整合了T-DNA和主干DNA,没有只整合主干DNA的案例。为了阐明整合模式,我们对拟南芥进行了大基因组重测序,并在10个T1转基因植株中鉴定了20个整合位点,其中大多数在两端都有T-DNA的左边界。平均每个整合位点包含6.3个T-DNA拷贝和2.65个主干DNA拷贝。T-DNA和主干之间的连接结构是高度可变的,揭示了以前未被充分认识的左右边界的读通频率。在烟叶中的瞬时表达研究表明,T-DNA和主干DNA同时被转移到转化细胞中,尽管主干DNA的拷贝数低于T-DNA。这些发现表明T-DNA和主干DNA在转移和整合过程中存在密切关系,从而为农杆菌介导的转化机制提供了新的见解。
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引用次数: 0
Sustainability requires the integration of farmer knowledge, scientific advancements, and comprehensive innovation. 可持续性要求将农民知识、科学进步和全面创新融为一体。
IF 2 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-12-01 Epub Date: 2024-10-21 DOI: 10.1007/s11248-024-00414-9
Urs Niggli

This viewpoint paper emphasises the need to diversify food production methods to simultaneously combat hunger and reduce environmental problems. The recommendations of the UN Food System Summit 2021 relate primarily to (i) the conservation of natural ecosystems, (ii) the sustainable management of existing agricultural land while increasing productivity and (iii) the restoration of already degraded land. Europe in particular faces unique challenges, such as reducing pollution and promoting organic farming up to 25 percent of the agricultural land area while maintaining food production. Ongoing efforts aim to create a transparent, fair and multi-level regulatory framework to support the Green Deal. The implementation of the Corporate Sustainability Reporting Directive (CSRD), which will sooner or later affect a larger proportion of European farmers, should support the transition. Science and innovation play a central role in this, as they are the cornerstones on which sustainable food systems are built. It is imperative that farmers actively participate in the co-design processes and utilise their wealth of experience and creativity to drive these innovations forward. A crucial aspect of the transition to sustainability is changing consumption patterns to limit food waste and reduce meat consumption. While this transition is essential, it is not without its formidable challenges. Diversification of agriculture, encompassing a spectrum of established techniques, is touted as a promising approach to achieving sustainability without sacrificing productivity. Furthermore, integrating truly sustainable agricultural practices with cutting-edge innovations, including new genomic techniques, has the potential to be a transformative solution.

本观点文件强调有必要使粮食生产方式多样化,以同时消除饥饿和减少环境问题。2021 年联合国粮食系统首脑会议的建议主要涉及:(i) 保护自然生态系统;(ii) 在提高生产力的同时对现有农业用地进行可持续管理;(iii) 恢复已经退化的土地。欧洲尤其面临着独特的挑战,如在保持粮食生产的同时,减少污染和推广有机耕作,使有机耕作达到农业用地面积的 25%。正在进行的努力旨在建立一个透明、公平和多层次的监管框架,以支持绿色交易。企业可持续发展报告指令》(CSRD)的实施迟早会影响到更大比例的欧洲农民,它应支持这一过渡。科学和创新在其中发挥着核心作用,因为它们是建立可持续粮食系统的基石。农民必须积极参与共同设计过程,利用他们丰富的经验和创造力推动这些创新。向可持续发展过渡的一个重要方面是改变消费模式,以限制食物浪费和减少肉类消费。虽然这种转变至关重要,但也并非没有艰巨的挑战。农业多样化包括一系列既有技术,被认为是在不牺牲生产力的情况下实现可持续发展的一种有前途的方法。此外,将真正可持续的农业实践与包括基因组新技术在内的尖端创新相结合,有可能成为一种变革性的解决方案。
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引用次数: 0
Global conference on sustainability in agriculture & food systems: innovation, indicators and implementation. 农业和粮食系统可持续性:创新、指标和实施全球会议。
IF 2.7 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-12-01 DOI: 10.1007/s11248-024-00418-5
Peter Kearns, Steffi Friedrichs
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引用次数: 0
Precision breeding in agriculture and food systems in the United Kingdom. 英国农业和食品系统中的精准育种。
IF 2 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-12-01 Epub Date: 2024-08-06 DOI: 10.1007/s11248-024-00397-7
Oli Watson, Sadiye Hayta

In recent years there have been major advances in precision breeding technologies, such as gene editing, that offer promising solutions to revolutionise global crop production and tackle the pressing issues in food systems. The UK has leading expertise in genomics, and research is already taking place to develop crops with improved resilience to climate change, resistance to disease and less reliance on chemical inputs. In March 2023, the Genetic Technology (Precision Breeding) Act received Royal Assent and passed into UK law. It provides a framework from which to build more proportionate regulations for plants and animals made using genetic technologies which contain genetic changes that could also arise through traditional breeding-known as 'Precision Bred Organisms'. New legislation and the utilization of UK world-leading research could help to enhance the efficiency of breeding systems and enable the development of plants and animals that are healthier, better for the environment and more resilient to climate change.

近年来,基因编辑等精准育种技术取得了重大进展,为彻底改变全球作物生产和解决粮食系统的紧迫问题提供了前景广阔的解决方案。英国在基因组学方面拥有领先的专业知识,目前已在开展研究,以开发具有更强抵御气候变化能力、抗病能力和更少依赖化学投入的作物。2023 年 3 月,《基因技术(精准育种)法案》获得皇室批准,成为英国法律。该法案提供了一个框架,据此可为利用基因技术制造的动植物制定更相称的法规,这些动植物含有通过传统育种也可能产生的基因变化,即 "精准育种生物"。新的立法和利用英国世界领先的研究成果将有助于提高育种系统的效率,并能培育出更健康、对环境更有利、对气候变化更有适应力的动植物。
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引用次数: 0
Limitations in measuring sustainable food systems: domestic policy priorities and global monitoring. 衡量可持续粮食系统的局限性:国内政策重点和全球监测。
IF 2 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-12-01 Epub Date: 2024-12-02 DOI: 10.1007/s11248-024-00417-6
Ritsuko Yoneda

In recent years, many strategies for sustainable food systems have been launched at the national and global levels, which require better tools to monitor their progress. Subsequently, discussions on their measurements have drawn enormous attention, and various indicators have been developed. As indicators at the national level reflect policy priorities in the respective countries, it is difficult to develop adequate global indicators that accommodate different national priorities. Additionally, if we pursue only the existing dataset, we may lose the thrust of the initial objectives. However, the collection of new data can place an enormous burden on stakeholders, both developing and developed countries. These difficulties were revealed in recent negotiations for the Kunming-Montreal Global Biodiversity Framework at the Convention on Biological Diversity at the 15th Conference of the Parties. Therefore, we must reach a compromise between what we want to achieve and the resources we can share.

近年来,在国家和全球层面启动了许多可持续粮食系统战略,这些战略需要更好的工具来监测其进展。随后,对其测量的讨论引起了极大的注意,并制定了各种指标。由于国家一级的指标反映了各国的政策优先事项,因此很难制定出适当的全球指标来适应不同的国家优先事项。此外,如果我们只追求现有的数据集,我们可能会失去最初目标的推动力。然而,收集新数据可能给发展中国家和发达国家的利益攸关方带来巨大负担。这些困难在最近举行的《生物多样性公约》第15次缔约方大会上关于《昆明-蒙特利尔全球生物多样性框架》的谈判中暴露出来。因此,我们必须在我们想要实现的目标和我们可以分享的资源之间达成妥协。
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引用次数: 0
Narratives in European debate concerning new genomic techniques. 欧洲关于新基因组技术的辩论叙述。
IF 2 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-12-01 Epub Date: 2024-12-04 DOI: 10.1007/s11248-024-00416-7
Marcin Napiórkowski, Andrzej Nowak, Mikołaj Biesaga, Szymon Talaga, Erika Staël von Holstein

Given the complexity of agricultural problems, it is essential to develop acceptable solutions for various stakeholders with diverse knowledge, viewpoints, and preferences. However, European public opinion has become highly polarized, making constructive discussions on these issues difficult. We present the results of the narrative analysis of media debate on new genomic techniques. The study identified two primary narrative groups: 'precaution-focused' and 'innovation-focused.' The former emphasizes caution, potential risks, and the need for stringent regulation, while the latter highlights benefits, progress, and the promise of genome editing for sustainable agricultural practices. Within each group of narratives, several distinct narratives were identified. The research has revealed that despite the high polarization, the narratives shared important values and beliefs. Going beyond the dividing narratives and concentrating on common values can depolarize the debate and set the stage for new narratives, enabling constructive debate, concentrating on solving problems, and maximizing collective outcomes.

鉴于农业问题的复杂性,为具有不同知识、观点和偏好的不同利益相关者制定可接受的解决方案至关重要。然而,欧洲公众舆论已经高度两极化,使得对这些问题的建设性讨论变得困难。我们提出了关于新基因组技术的媒体辩论的叙述分析结果。该研究确定了两个主要的叙事群体:“以预防措施为重点”和“以创新为重点”。前者强调谨慎、潜在风险和严格监管的必要性,而后者则强调基因组编辑对可持续农业实践的好处、进展和前景。在每一组叙述中,有几个不同的叙述被确定。研究表明,尽管存在高度的两极分化,但这些叙事有着重要的价值观和信仰。超越分裂的叙述,专注于共同的价值观,可以消除辩论的两极化,为新的叙述奠定基础,使建设性的辩论成为可能,专注于解决问题,并最大限度地提高集体成果。
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引用次数: 0
Regulation of genome edited organisms in Australia. 澳大利亚对基因组编辑生物的监管。
IF 2 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-12-01 Epub Date: 2024-10-24 DOI: 10.1007/s11248-024-00411-y
Peter Thygesen

Whether organisms developed with the use of genome editing techniques, or food derived from such organisms, are, or should be, regulated as genetically modified organisms (GMOs) or genetically modified (GM) food, respectively, remains a subject of debate globally. Much of the discussion has been scientific and focussed on the similar genetic outcomes of some genome editing techniques and 'conventional' or natural mutagenesis. Many jurisdictions, including Australia, have considered, or are considering, how their regulatory frameworks will deal with such organisms and products. In Australia, organisms developed with site directed nuclease 1 (SDN-1, with no added template to guide homology-directed repair) are not regulated as GMOs, pursuant to exclusions in the Gene Technology Regulations 2001. The exclusion of SDN-1 organisms from regulation in Australia is sometimes misrepresented, including in scientific peer reviewed publications, as extending to all genome edited organisms. This highlights the importance for researchers, developers and other stakeholders to understand that whether genome edited organisms are, or are not, subject to regulation as GMOs in a particular jurisdiction may quintessentially be a legal question, not a scientific one.

使用基因组编辑技术开发的生物体或由此类生物体衍生的食品是否或是否应分别作为转基因生物(GMO)或转基因食品加以监管,仍是全球范围内争论的一个话题。大部分讨论都是科学性的,集中在一些基因组编辑技术与 "传统 "或自然诱变技术的相似遗传结果上。包括澳大利亚在内的许多辖区已经考虑或正在考虑其监管框架将如何处理此类生物体和产品。在澳大利亚,根据《2001 年基因技术条例》中的除外规定,使用定点定向核酸酶 1(SDN-1,不添加指导同源定向修复的模板)开发的生物不作为转基因生物进行监管。在澳大利亚,将 SDN-1 生物排除在监管范围之外有时会被误解,包括在同行评审的科学出版物中,被认为适用于所有基因组编辑生物。这突出表明,研究人员、开发人员和其他利益相关者必须明白,基因组编辑生物在特定司法管辖区是否作为转基因生物受到监管,本质上可能是一个法律问题,而非科学问题。
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引用次数: 0
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Transgenic Research
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