Pub Date : 2025-04-08DOI: 10.1186/s41182-025-00732-6
Alexandra Martín Ramírez, Akeem Abiodun Akindele, Vicenta González Mora, Luz García, Nicole Lara, Eva de la Torre-Capitán Matías, Irene Molina de la Fuente, Sulaiman Adebayo Nassar, Thuy-Huong Ta-Tang, Agustín Benito, Pedro Berzosa
Background: Nigeria accounts for the greatest burden of malaria disease globally. Malaria control requires an effective treatment after diagnosis. The efficacy of antimalarial drugs can be assessed through the analysis of genetic changes associated with reduced drug sensitivity.
Methods: This study includes the analysis of the markers associated with artemisinin (pfk13), sulfadoxine-pyrimethamine (pfdhfr and pfdhps), and chloroquine and its derivatives (pfmdr1 and pfcrt) resistances, in blood samples collected from asymptomatic children in south-western Nigeria.
Results: The 25.95% of samples showed a number of mutations in pfk13 gene. Among those, the validated, C580Y, and the candidate, R515K, mutations by WHO were detected. Twenty-seven pfdhps different haplotypes were observed, with the haplotype ISGKAA as the most prevalent (18.80%), followed by IFGKAA (12.78%) and IAGKAA (11.28%). The VAGKGS was the most common haplotype carrying the I431V mutation (10.53%). Combinations of alleles in pfdhfr and pfdhps genes provided a 40.98% of samples with the partially resistant haplotype (IRNG). No samples exhibited the 'fully resistant' or 'super resistant' pfdhprf-pfdhps combinations, but one sample contained mutations at pfdhfr 51I, 59R, and 108N with pfdhps 431V, 436A, A437G and 540E. The analysis of pfcrt 72-76 variants disclosed a 12.12% of samples with the mutant-type (CVIET). No double mutant pfmdr1 haplotypes 86Y/1246Y (YY) were detected, nor was the haplotype formed by the alleles 86Y pfmdr1 + pfcrt 76 T (YT).
Conclusions: There was no evidence of parasite genomes harbouring multilocus mutations conferring multidrug resistance, although evidence of a validated (C580Y) and a candidate (R515K) mutation in pfk13 gene, high frequency pfdhfr mutant alleles and high variability of pfdhps haplotypes were found in this study, which provides a baseline information essential in monitoring P. falciparum resistances.
{"title":"Mutational profile of pfdhfr, pfdhps, pfmdr1, pfcrt and pfk13 genes of P. falciparum associated with resistance to different antimalarial drugs in Osun state, southwestern Nigeria.","authors":"Alexandra Martín Ramírez, Akeem Abiodun Akindele, Vicenta González Mora, Luz García, Nicole Lara, Eva de la Torre-Capitán Matías, Irene Molina de la Fuente, Sulaiman Adebayo Nassar, Thuy-Huong Ta-Tang, Agustín Benito, Pedro Berzosa","doi":"10.1186/s41182-025-00732-6","DOIUrl":"https://doi.org/10.1186/s41182-025-00732-6","url":null,"abstract":"<p><strong>Background: </strong>Nigeria accounts for the greatest burden of malaria disease globally. Malaria control requires an effective treatment after diagnosis. The efficacy of antimalarial drugs can be assessed through the analysis of genetic changes associated with reduced drug sensitivity.</p><p><strong>Methods: </strong>This study includes the analysis of the markers associated with artemisinin (pfk13), sulfadoxine-pyrimethamine (pfdhfr and pfdhps), and chloroquine and its derivatives (pfmdr1 and pfcrt) resistances, in blood samples collected from asymptomatic children in south-western Nigeria.</p><p><strong>Results: </strong>The 25.95% of samples showed a number of mutations in pfk13 gene. Among those, the validated, C580Y, and the candidate, R515K, mutations by WHO were detected. Twenty-seven pfdhps different haplotypes were observed, with the haplotype ISGKAA as the most prevalent (18.80%), followed by IFGKAA (12.78%) and IAGKAA (11.28%). The VAGKGS was the most common haplotype carrying the I431V mutation (10.53%). Combinations of alleles in pfdhfr and pfdhps genes provided a 40.98% of samples with the partially resistant haplotype (IRNG). No samples exhibited the 'fully resistant' or 'super resistant' pfdhprf-pfdhps combinations, but one sample contained mutations at pfdhfr 51I, 59R, and 108N with pfdhps 431V, 436A, A437G and 540E. The analysis of pfcrt 72-76 variants disclosed a 12.12% of samples with the mutant-type (CVIET). No double mutant pfmdr1 haplotypes 86Y/1246Y (YY) were detected, nor was the haplotype formed by the alleles 86Y pfmdr1 + pfcrt 76 T (YT).</p><p><strong>Conclusions: </strong>There was no evidence of parasite genomes harbouring multilocus mutations conferring multidrug resistance, although evidence of a validated (C580Y) and a candidate (R515K) mutation in pfk13 gene, high frequency pfdhfr mutant alleles and high variability of pfdhps haplotypes were found in this study, which provides a baseline information essential in monitoring P. falciparum resistances.</p>","PeriodicalId":23311,"journal":{"name":"Tropical Medicine and Health","volume":"53 1","pages":"49"},"PeriodicalIF":3.6,"publicationDate":"2025-04-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143812592","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-04-07DOI: 10.1186/s41182-025-00719-3
Taru Singh, Syed Shah Areeb Hussain, K Pradhan, Monica Rawat, Ramesh Chand Dhiman
Background: Malaria is one of the most infectious life-threatening vector-borne diseases affected by climate change. Because of the emerging climate change problem, it was thought prudent to identify prevalent mosquito species and find the malaria parasite's presence in field-collected mosquitoes in Odisha.
Material and methods: The study was undertaken at four villages in the Rourkela, Sundergarh district of Odisha, India, from January 2018 to January 2020, generating entomological and climatic data. Field-collected mosquitoes were processed, and DNA was extracted, followed by multiplex PCR for differentiation of sibling species for Anopheles culicifacies and Anopheles fluviatilis mosquitoes. Enzyme-Linked immunosorbent assay was also performed for detection of circumsporozoite proteins of Plasmodium. Sequencing was performed, and a phylogenetic tree was constructed using the neighbor-joining method.
Results: For Anopheles culicifacies, 43.25% of mosquitoes belonged to sibling species C, followed by species B, A, and D. Similarly, for Anopheles fluviatilis, sibling species T was found in 57.5%, followed by species U and S. Sibling species were confirmed on the difference in the sequences of conserved regions of the 28S rDNA.
Conclusions: We can conclude that sibling species C (Anopheles culicifacies) was predominant in Rourkela, and sequencing further confirmed the presence of parasites (Plasmodium vivax) in Anopheles culicifacies as sibling species C.
{"title":"Unveiling malaria vectors: species complex and surveillance insights from Sundergarh, Odisha, India.","authors":"Taru Singh, Syed Shah Areeb Hussain, K Pradhan, Monica Rawat, Ramesh Chand Dhiman","doi":"10.1186/s41182-025-00719-3","DOIUrl":"10.1186/s41182-025-00719-3","url":null,"abstract":"<p><strong>Background: </strong>Malaria is one of the most infectious life-threatening vector-borne diseases affected by climate change. Because of the emerging climate change problem, it was thought prudent to identify prevalent mosquito species and find the malaria parasite's presence in field-collected mosquitoes in Odisha.</p><p><strong>Material and methods: </strong>The study was undertaken at four villages in the Rourkela, Sundergarh district of Odisha, India, from January 2018 to January 2020, generating entomological and climatic data. Field-collected mosquitoes were processed, and DNA was extracted, followed by multiplex PCR for differentiation of sibling species for Anopheles culicifacies and Anopheles fluviatilis mosquitoes. Enzyme-Linked immunosorbent assay was also performed for detection of circumsporozoite proteins of Plasmodium. Sequencing was performed, and a phylogenetic tree was constructed using the neighbor-joining method.</p><p><strong>Results: </strong>For Anopheles culicifacies, 43.25% of mosquitoes belonged to sibling species C, followed by species B, A, and D. Similarly, for Anopheles fluviatilis, sibling species T was found in 57.5%, followed by species U and S. Sibling species were confirmed on the difference in the sequences of conserved regions of the 28S rDNA.</p><p><strong>Conclusions: </strong>We can conclude that sibling species C (Anopheles culicifacies) was predominant in Rourkela, and sequencing further confirmed the presence of parasites (Plasmodium vivax) in Anopheles culicifacies as sibling species C.</p>","PeriodicalId":23311,"journal":{"name":"Tropical Medicine and Health","volume":"53 1","pages":"48"},"PeriodicalIF":3.6,"publicationDate":"2025-04-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11974068/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143796468","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-04-03DOI: 10.1186/s41182-024-00678-1
Adewunmi Akingbola, Christopher Abiodun Adegbesan, Olajumoke Adewole, Courage Idahor, Tolani Odukoya, Emmanuel Nwaeze, Shekoni Mayowa, Owolabi Abdullahi, Petra Kerubo Mariaria
Mpox has re-emerged as a significant public health threat, particularly in Africa. This study explores the key drivers behind the recent resurgence, focusing on epidemiological trends, transmission dynamics, and lessons learned from recent outbreaks. The research involved a comprehensive review of recent mpox outbreaks, analyzing factors, such as socio-economic conditions, environmental influences, and genetic evolution. Findings indicate that the resurgence is linked to the cessation of smallpox vaccination, increased human-wildlife interactions, and rapid urbanization in endemic regions. The virus, which was previously confined to rural areas, has now spread to urban populations, and crossed national borders, driven by high population mobility and socio-economic instability. A notable shift in transmission dynamics has been observed, with increased human-to-human transmission, particularly among men who have sex with men (MSM), contributing to more severe and widespread outbreaks. The study highlights the urgent need to strengthen health systems in Africa, particularly in the areas of diagnostics, surveillance, and public health preparedness. Challenges such as inadequate laboratory infrastructure and delayed response mechanisms have exposed vulnerabilities in current public health frameworks. To prevent future outbreaks, targeted strategies must be implemented, including enhanced community engagement, improved access to vaccines and treatments, and timely, accurate reporting of cases. Coordinated global action is essential to prevent mpox from becoming a more persistent and widespread public health threat. This research discusses the importance of proactive measures and international cooperation in addressing the ongoing threat posed by mpox, particularly in regions with limited healthcare resources.
{"title":"Understanding the resurgence of mpox: key drivers and lessons from recent outbreaks in Africa.","authors":"Adewunmi Akingbola, Christopher Abiodun Adegbesan, Olajumoke Adewole, Courage Idahor, Tolani Odukoya, Emmanuel Nwaeze, Shekoni Mayowa, Owolabi Abdullahi, Petra Kerubo Mariaria","doi":"10.1186/s41182-024-00678-1","DOIUrl":"10.1186/s41182-024-00678-1","url":null,"abstract":"<p><p>Mpox has re-emerged as a significant public health threat, particularly in Africa. This study explores the key drivers behind the recent resurgence, focusing on epidemiological trends, transmission dynamics, and lessons learned from recent outbreaks. The research involved a comprehensive review of recent mpox outbreaks, analyzing factors, such as socio-economic conditions, environmental influences, and genetic evolution. Findings indicate that the resurgence is linked to the cessation of smallpox vaccination, increased human-wildlife interactions, and rapid urbanization in endemic regions. The virus, which was previously confined to rural areas, has now spread to urban populations, and crossed national borders, driven by high population mobility and socio-economic instability. A notable shift in transmission dynamics has been observed, with increased human-to-human transmission, particularly among men who have sex with men (MSM), contributing to more severe and widespread outbreaks. The study highlights the urgent need to strengthen health systems in Africa, particularly in the areas of diagnostics, surveillance, and public health preparedness. Challenges such as inadequate laboratory infrastructure and delayed response mechanisms have exposed vulnerabilities in current public health frameworks. To prevent future outbreaks, targeted strategies must be implemented, including enhanced community engagement, improved access to vaccines and treatments, and timely, accurate reporting of cases. Coordinated global action is essential to prevent mpox from becoming a more persistent and widespread public health threat. This research discusses the importance of proactive measures and international cooperation in addressing the ongoing threat posed by mpox, particularly in regions with limited healthcare resources.</p>","PeriodicalId":23311,"journal":{"name":"Tropical Medicine and Health","volume":"53 1","pages":"47"},"PeriodicalIF":3.6,"publicationDate":"2025-04-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11970007/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143781271","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-04-02DOI: 10.1186/s41182-025-00691-y
Mohammad Jahid Hasan, Muna Islam, Tanjina Tabassum, Md Mohiuddin Khan, Md Khairul Islam, Rafiya Afroz, Rubaiya Rahman Tui, Mohammad Abdul Baset, Md Anwar Syed, Joarder Rakeen Manzoor, Mohiuddin Sharif, Tamanna Tabassum
Background: Dengue fever remains a significant public health challenge in Bangladesh. This study aimed to characterize the clinical and epidemiological profiles of confirmed dengue cases during the 2024 outbreak in Bangladesh.
Methods: This observational study was conducted from June to September 2024 in four tertiary care hospitals across Bangladesh located in four administrative divisions. A total of 401 laboratory-confirmed (NS1- or IgM-positive) dengue patients aged ≥ 12 years were included. Demographic data, clinical presentations, and laboratory findings were collected through face‒to-face interviews. The revised WHO 2009 dengue case classification was used for severity assessment of dengue patients. Descriptive and inferential statistics were used to summarize the results.
Results: The mean age of patients with dengue fever was 29.81 ± 11.64 (SD) years, with 7.2% of the patients being adolescents (aged 12-17 years). A clear male predominance (88.3%) was observed. Overall, 65.6% of patients had dengue with warning signs, and 9% had severe dengue. Fever (94.3%), headache (70.3%), myalgia (66.1%), and gastrointestinal symptoms such as nausea (49.9%) and abdominal pain (43.9%) were common symptoms. The median in-hospital stay of both non-severe and severe cases were 4 & 5 days, respectively. The in-hospital mortality rate was 0.75%, which was significantly higher among severe dengue patients (5.6%).
Conclusion: The 2024 dengue outbreak in Bangladesh predominantly affected young adult males, with a notable prevalence of gastrointestinal symptoms alongside classic dengue manifestations.
{"title":"Clinical and epidemiological characteristics of the dengue outbreak of 2024: a multicenter observation from Bangladesh.","authors":"Mohammad Jahid Hasan, Muna Islam, Tanjina Tabassum, Md Mohiuddin Khan, Md Khairul Islam, Rafiya Afroz, Rubaiya Rahman Tui, Mohammad Abdul Baset, Md Anwar Syed, Joarder Rakeen Manzoor, Mohiuddin Sharif, Tamanna Tabassum","doi":"10.1186/s41182-025-00691-y","DOIUrl":"10.1186/s41182-025-00691-y","url":null,"abstract":"<p><strong>Background: </strong>Dengue fever remains a significant public health challenge in Bangladesh. This study aimed to characterize the clinical and epidemiological profiles of confirmed dengue cases during the 2024 outbreak in Bangladesh.</p><p><strong>Methods: </strong>This observational study was conducted from June to September 2024 in four tertiary care hospitals across Bangladesh located in four administrative divisions. A total of 401 laboratory-confirmed (NS1- or IgM-positive) dengue patients aged ≥ 12 years were included. Demographic data, clinical presentations, and laboratory findings were collected through face‒to-face interviews. The revised WHO 2009 dengue case classification was used for severity assessment of dengue patients. Descriptive and inferential statistics were used to summarize the results.</p><p><strong>Results: </strong>The mean age of patients with dengue fever was 29.81 ± 11.64 (SD) years, with 7.2% of the patients being adolescents (aged 12-17 years). A clear male predominance (88.3%) was observed. Overall, 65.6% of patients had dengue with warning signs, and 9% had severe dengue. Fever (94.3%), headache (70.3%), myalgia (66.1%), and gastrointestinal symptoms such as nausea (49.9%) and abdominal pain (43.9%) were common symptoms. The median in-hospital stay of both non-severe and severe cases were 4 & 5 days, respectively. The in-hospital mortality rate was 0.75%, which was significantly higher among severe dengue patients (5.6%).</p><p><strong>Conclusion: </strong>The 2024 dengue outbreak in Bangladesh predominantly affected young adult males, with a notable prevalence of gastrointestinal symptoms alongside classic dengue manifestations.</p>","PeriodicalId":23311,"journal":{"name":"Tropical Medicine and Health","volume":"53 1","pages":"45"},"PeriodicalIF":3.6,"publicationDate":"2025-04-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11963684/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143773378","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Background: Schistosomiasis control relies primarily on mass drug administration with praziquantel. However, persistent reinfection and high treatment costs remain significant challenges. Current strategies largely overlook intermediate host molluscs and infected larvae, which are critical sources of transmission. Niclosamide, the only widely used molluscicide, is limited by its high environmental toxicity and cost, creating a need for safer and more sustainable alternatives.
Methods: In this study, we investigated the effects of a spirulina-based feed derived from the cyanobacterium Arthrospira platensis on infected snails. Laboratory experiments were conducted to assess the impact of spirulina on cercariae release from infected snails. We further examined the safety profile of spirulina by testing its effects on both snails and Japanese medaka. Additionally, the direct effects of spirulina constituents on cercariae viability were evaluated.
Results: Snails fed spirulina presented a significant reduction in cercariae output, with reductions of up to 88%. The reduction was concentration dependent and more pronounced during the early stages of infection. Spirulina had no toxic effects on either snails or Japanese medakas. Further analysis revealed that the active ingredient causing the increase in mortality in cercaria was linoleic acid, a common ingredient in both the spirulina feed and the base feed, and a direct anti-parasitic effect of linoleic acid was confirmed.
Conclusion: Spirulina represents a promising, environmentally safe feed that can reduce the transmission of schistosomiasis by directly impacting schistosome larvae within infected snails and reducing the release of cercariae. This novel approach offers a sustainable and nontoxic alternative to current molluscicidal strategies and may contribute to more effective and environmentally friendly schistosomiasis control.
{"title":"Development of a spirulina feed effective only for the two larval stages of Schistosoma mansoni, not the intermediate host mollusc.","authors":"Takashi Kumagai, Masaaki Miyamoto, Yurino Koseki, Yasuyuki Imai, Tomoko Ishino","doi":"10.1186/s41182-025-00727-3","DOIUrl":"10.1186/s41182-025-00727-3","url":null,"abstract":"<p><strong>Background: </strong>Schistosomiasis control relies primarily on mass drug administration with praziquantel. However, persistent reinfection and high treatment costs remain significant challenges. Current strategies largely overlook intermediate host molluscs and infected larvae, which are critical sources of transmission. Niclosamide, the only widely used molluscicide, is limited by its high environmental toxicity and cost, creating a need for safer and more sustainable alternatives.</p><p><strong>Methods: </strong>In this study, we investigated the effects of a spirulina-based feed derived from the cyanobacterium Arthrospira platensis on infected snails. Laboratory experiments were conducted to assess the impact of spirulina on cercariae release from infected snails. We further examined the safety profile of spirulina by testing its effects on both snails and Japanese medaka. Additionally, the direct effects of spirulina constituents on cercariae viability were evaluated.</p><p><strong>Results: </strong>Snails fed spirulina presented a significant reduction in cercariae output, with reductions of up to 88%. The reduction was concentration dependent and more pronounced during the early stages of infection. Spirulina had no toxic effects on either snails or Japanese medakas. Further analysis revealed that the active ingredient causing the increase in mortality in cercaria was linoleic acid, a common ingredient in both the spirulina feed and the base feed, and a direct anti-parasitic effect of linoleic acid was confirmed.</p><p><strong>Conclusion: </strong>Spirulina represents a promising, environmentally safe feed that can reduce the transmission of schistosomiasis by directly impacting schistosome larvae within infected snails and reducing the release of cercariae. This novel approach offers a sustainable and nontoxic alternative to current molluscicidal strategies and may contribute to more effective and environmentally friendly schistosomiasis control.</p>","PeriodicalId":23311,"journal":{"name":"Tropical Medicine and Health","volume":"53 1","pages":"46"},"PeriodicalIF":3.6,"publicationDate":"2025-04-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11963688/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143773392","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-04-02DOI: 10.1186/s41182-025-00728-2
Olalekan John Okesanya, Mohamed Mustaf Ahmed, Jerico Bautista Ogaya, Blessing Olawunmi Amisu, Bonaventure Michael Ukoaka, Olaniyi Abideen Adigun, Emery Manirambona, Olakulehin Adebusuyi, Zhinya Kawa Othman, Olanegan Gloria Oluwakemi, Oluwaseunayo Deborah Ayando, Maria Ivy Rochelle S Tan, Nimat Bola Idris, Hassan Hakeem Kayode, Tolutope Adebimpe Oso, Musa Ahmed, M B N Kouwenhoven, Adamu Muhammad Ibrahim, Don Eliseo Lucero-Prisno
<p><strong>Background: </strong>Antimicrobial resistance (AMR) poses a global health threat, particularly in low- and middle-income countries (LMICs). Clustered regularly interspaced short palindromic repeats (CRISPR)-Cas system technology offers a promising tool to combat AMR by targeting and disabling resistance genes in WHO bacterial priority pathogens. Thus, we systematically reviewed the potential of CRISPR-Cas technology to address AMR.</p><p><strong>Methods: </strong>This systematic review adhered to the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) guidelines. A comprehensive literature search was conducted using the Scopus and PubMed databases, focusing on publications from 2014 to June 2024. Keywords included "CRISPR/Cas," "antimicrobial resistance," and "pathogen." The eligibility criteria required original studies involving CRISPR/Cas systems that targeted AMR. Data were extracted from eligible studies, qualitatively synthesized, and assessed for bias using the Joanna Briggs Institute (JBI)-standardized tool.</p><p><strong>Results: </strong>Data from 48 eligible studies revealed diverse CRISPR-Cas systems, including CRISPR-Cas9, CRISPR-Cas12a, and CRISPR-Cas3, targeting various AMR genes, such as blaOXA-232, blaNDM, blaCTX-M, ermB, vanA, mecA, fosA3, blaKPC, and mcr-1, which are responsible for carbapenem, cephalosporin, methicillin, macrolide, vancomycin, colistin, and fosfomycin resistance. Some studies have explored the role of CRISPR in virulence gene suppression, including enterotoxin genes, tsst1, and iutA in Staphylococcus aureus and Klebsiella pneumoniae. Delivery mechanisms include bacteriophages, nanoparticles, electro-transformation, and conjugative plasmids, which demonstrate high efficiency in vitro and in vivo. CRISPR-based diagnostic applications have demonstrated high sensitivity and specificity, with detection limits as low as 2.7 × 10<sup>2</sup> CFU/mL, significantly outperforming conventional methods. Experimental studies have reported significant reductions in resistant bacterial populations and complete suppression of the targeted strains. Engineered phagemid particles and plasmid-curing systems have been shown to eliminate IncF plasmids, cured plasmids carrying vanA, mcr-1, and blaNDM with 94% efficiency, and restore antibiotic susceptibility. Gene re-sensitization strategies have been used to restore fosfomycin susceptibility in E. coli and eliminate blaKPC-2-mediated carbapenem resistance in MDR bacteria. Whole-genome sequencing and bioinformatics tools have provided deeper insights into CRISPR-mediated defense mechanisms. Optimization strategies have significantly enhanced gene-editing efficiencies, offering a promising approach for tackling AMR in high-priority WHO pathogens.</p><p><strong>Conclusions: </strong>CRISPR-Cas technology has the potential to address AMR across priority WHO pathogens. While promising, challenges in optimizing in vivo delivery, mitigating potential res
{"title":"Reinvigorating AMR resilience: leveraging CRISPR-Cas technology potentials to combat the 2024 WHO bacterial priority pathogens for enhanced global health security-a systematic review.","authors":"Olalekan John Okesanya, Mohamed Mustaf Ahmed, Jerico Bautista Ogaya, Blessing Olawunmi Amisu, Bonaventure Michael Ukoaka, Olaniyi Abideen Adigun, Emery Manirambona, Olakulehin Adebusuyi, Zhinya Kawa Othman, Olanegan Gloria Oluwakemi, Oluwaseunayo Deborah Ayando, Maria Ivy Rochelle S Tan, Nimat Bola Idris, Hassan Hakeem Kayode, Tolutope Adebimpe Oso, Musa Ahmed, M B N Kouwenhoven, Adamu Muhammad Ibrahim, Don Eliseo Lucero-Prisno","doi":"10.1186/s41182-025-00728-2","DOIUrl":"10.1186/s41182-025-00728-2","url":null,"abstract":"<p><strong>Background: </strong>Antimicrobial resistance (AMR) poses a global health threat, particularly in low- and middle-income countries (LMICs). Clustered regularly interspaced short palindromic repeats (CRISPR)-Cas system technology offers a promising tool to combat AMR by targeting and disabling resistance genes in WHO bacterial priority pathogens. Thus, we systematically reviewed the potential of CRISPR-Cas technology to address AMR.</p><p><strong>Methods: </strong>This systematic review adhered to the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) guidelines. A comprehensive literature search was conducted using the Scopus and PubMed databases, focusing on publications from 2014 to June 2024. Keywords included \"CRISPR/Cas,\" \"antimicrobial resistance,\" and \"pathogen.\" The eligibility criteria required original studies involving CRISPR/Cas systems that targeted AMR. Data were extracted from eligible studies, qualitatively synthesized, and assessed for bias using the Joanna Briggs Institute (JBI)-standardized tool.</p><p><strong>Results: </strong>Data from 48 eligible studies revealed diverse CRISPR-Cas systems, including CRISPR-Cas9, CRISPR-Cas12a, and CRISPR-Cas3, targeting various AMR genes, such as blaOXA-232, blaNDM, blaCTX-M, ermB, vanA, mecA, fosA3, blaKPC, and mcr-1, which are responsible for carbapenem, cephalosporin, methicillin, macrolide, vancomycin, colistin, and fosfomycin resistance. Some studies have explored the role of CRISPR in virulence gene suppression, including enterotoxin genes, tsst1, and iutA in Staphylococcus aureus and Klebsiella pneumoniae. Delivery mechanisms include bacteriophages, nanoparticles, electro-transformation, and conjugative plasmids, which demonstrate high efficiency in vitro and in vivo. CRISPR-based diagnostic applications have demonstrated high sensitivity and specificity, with detection limits as low as 2.7 × 10<sup>2</sup> CFU/mL, significantly outperforming conventional methods. Experimental studies have reported significant reductions in resistant bacterial populations and complete suppression of the targeted strains. Engineered phagemid particles and plasmid-curing systems have been shown to eliminate IncF plasmids, cured plasmids carrying vanA, mcr-1, and blaNDM with 94% efficiency, and restore antibiotic susceptibility. Gene re-sensitization strategies have been used to restore fosfomycin susceptibility in E. coli and eliminate blaKPC-2-mediated carbapenem resistance in MDR bacteria. Whole-genome sequencing and bioinformatics tools have provided deeper insights into CRISPR-mediated defense mechanisms. Optimization strategies have significantly enhanced gene-editing efficiencies, offering a promising approach for tackling AMR in high-priority WHO pathogens.</p><p><strong>Conclusions: </strong>CRISPR-Cas technology has the potential to address AMR across priority WHO pathogens. While promising, challenges in optimizing in vivo delivery, mitigating potential res","PeriodicalId":23311,"journal":{"name":"Tropical Medicine and Health","volume":"53 1","pages":"43"},"PeriodicalIF":3.6,"publicationDate":"2025-04-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11963374/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143773399","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Background: Bithynia spp., a key intermediate host of Opisthorchis viverrini, is widely distributed in the lower Mekong sub-region, where opisthorchiasis remains a major public health concern. Understanding the genetic diversity and population structure of these snails is crucial for disease control. Bithynia siamensis sensu lato has been classified into three genetic lineages (I-III) based on cytochrome c oxidase subunit 1 (cox1) and 16S ribosomal RNA (16S rRNA) sequence analysis. This study focuses on Champasak Province, Laos, a highly endemic area of opisthorchiasis with limited genetic data on Bithynia spp.
Methods: Bithynia snails were collected from 12 villages in Khong and Mounlapamok districts, Champasak Province, Laos, between February and August 2024. To compare with previous reports, a total of 246 and 139 samples were analyzed using cox1 and 16S rRNA markers, respectively. Genetic diversity, genetic differentiation, and genetic structure were assessed based on these markers. Haplotype networks were constructed based on cox1 and 16S RNA sequences to elucidate the genetic lineage of these samples.
Results: In the present study, only Bithynia siamensis goniomphalos was identified, while B. s. siamensis and B. funiculata were not found. Our findings revealed that both cox1 and 16S rRNA sequences exhibited high haplotype diversity among populations but relatively low nucleotide diversity. Two lineages of B. s. goniomphalos (lineages II and III) were detected in the studied areas, exhibiting significant genetic structuring among groups of snail populations from different villages in each lineage. Notably, lineage II was identified in Laos for the first time. The distribution of lineage II was observed near the southern border of Laos and Cambodia.
Conclusions: This study is the first to use DNA analysis to investigate Bithynia spp. in opisthorchiasis-endemic areas of Champasak Province, where B. s. goniomphalos lineages II and III were detected, but lineage I was not found. Our finding suggested that geographic or environmental factors influence the distribution of specific Bithynia lineages in this region. Many O. viverrini endemic areas in Southeast Asia still lack genetic data on Bithynia snails which could provide valuable insights into the transmission dynamics of opisthorchiasis. Therefore, further investigations should be conducted in these areas using cox1 and 16S rRNA sequences for comparison with previous studies.
背景:Bithynia spp是一种重要的中间宿主,广泛分布于湄公河下游次区域,该地区的蛇喉病仍然是一个主要的公共卫生问题。了解这些蜗牛的遗传多样性和种群结构对疾病控制至关重要。根据细胞色素c氧化酶亚基1 (cox1)和16S核糖体RNA (16S rRNA)的序列分析,将褐斑斑鱼(Bithynia siamensis sensu lato)分为3个遗传谱系(I-III)。方法:于2024年2月至8月在老挝占巴塞省孔县和Mounlapamok县的12个村庄采集双螺。为了与之前的报道进行比较,我们分别使用cox1和16S rRNA标记分析了246个和139个样本。基于这些标记对遗传多样性、遗传分化和遗传结构进行了评价。基于cox1和16S RNA序列构建单倍型网络,阐明这些样本的遗传谱系。结果:本研究中只鉴定到双翅虫(Bithynia siamensis goniomphalos),未发现双翅虫(b.s. siamensis)和双翅虫(b.s. funiculata)。我们的研究结果表明,cox1和16S rRNA序列在人群中具有较高的单倍型多样性,但核苷酸多样性相对较低。在研究区发现了2个钉螺世系(II和III世系),每个世系中不同村庄的钉螺种群具有明显的遗传结构。值得注意的是,II系首次在老挝被发现。ⅱ系分布在老挝和柬埔寨南部边界附近。结论:本研究首次利用DNA分析方法对占巴塞省血吸虫病流行地区的Bithynia种进行了调查,在该地区发现了B. s. goniomphalos II和III家系,但未发现I家系。研究结果表明,地理或环境因素影响了该地区特定鱼系的分布。东南亚许多产弧菌流行地区仍然缺乏关于双螺螺的遗传数据,这些数据可以为了解蛇胸片病的传播动态提供有价值的见解。因此,需要在这些领域使用cox1和16S rRNA序列进行进一步的研究,与以往的研究进行比较。
{"title":"Genetic structure and geographical distribution of Bithynia siamensis sensu lato from Khong and Mounlapamok districts, Champasak Province, Laos.","authors":"Naruemon Bunchom, Weerachai Saijuntha, Virasack Bounavong, Bounmixay Pakouakeu, Parita Hansana, Pheovaly Soundala, Chavanut Jaroenchaiwattanachote, Takeshi Agatsuma, Marcello Otake Sato, Philippe Buchy, Moritoshi Iwagami","doi":"10.1186/s41182-025-00720-w","DOIUrl":"10.1186/s41182-025-00720-w","url":null,"abstract":"<p><strong>Background: </strong>Bithynia spp., a key intermediate host of Opisthorchis viverrini, is widely distributed in the lower Mekong sub-region, where opisthorchiasis remains a major public health concern. Understanding the genetic diversity and population structure of these snails is crucial for disease control. Bithynia siamensis sensu lato has been classified into three genetic lineages (I-III) based on cytochrome c oxidase subunit 1 (cox1) and 16S ribosomal RNA (16S rRNA) sequence analysis. This study focuses on Champasak Province, Laos, a highly endemic area of opisthorchiasis with limited genetic data on Bithynia spp.</p><p><strong>Methods: </strong>Bithynia snails were collected from 12 villages in Khong and Mounlapamok districts, Champasak Province, Laos, between February and August 2024. To compare with previous reports, a total of 246 and 139 samples were analyzed using cox1 and 16S rRNA markers, respectively. Genetic diversity, genetic differentiation, and genetic structure were assessed based on these markers. Haplotype networks were constructed based on cox1 and 16S RNA sequences to elucidate the genetic lineage of these samples.</p><p><strong>Results: </strong>In the present study, only Bithynia siamensis goniomphalos was identified, while B. s. siamensis and B. funiculata were not found. Our findings revealed that both cox1 and 16S rRNA sequences exhibited high haplotype diversity among populations but relatively low nucleotide diversity. Two lineages of B. s. goniomphalos (lineages II and III) were detected in the studied areas, exhibiting significant genetic structuring among groups of snail populations from different villages in each lineage. Notably, lineage II was identified in Laos for the first time. The distribution of lineage II was observed near the southern border of Laos and Cambodia.</p><p><strong>Conclusions: </strong>This study is the first to use DNA analysis to investigate Bithynia spp. in opisthorchiasis-endemic areas of Champasak Province, where B. s. goniomphalos lineages II and III were detected, but lineage I was not found. Our finding suggested that geographic or environmental factors influence the distribution of specific Bithynia lineages in this region. Many O. viverrini endemic areas in Southeast Asia still lack genetic data on Bithynia snails which could provide valuable insights into the transmission dynamics of opisthorchiasis. Therefore, further investigations should be conducted in these areas using cox1 and 16S rRNA sequences for comparison with previous studies.</p>","PeriodicalId":23311,"journal":{"name":"Tropical Medicine and Health","volume":"53 1","pages":"44"},"PeriodicalIF":3.6,"publicationDate":"2025-04-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11963630/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143773395","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-03-28DOI: 10.1186/s41182-025-00718-4
William Ngosa, Tadatsugu Imamura, Nyuma Mbewe, Joseph Seriki, Oscar Nzila, Fred Mfune, Godfrey Zulu, Chomba Mulando, Tizha Chiluba, Luo Miyanda, Agness Phiri, Lucy Sichone, Galion Mwape, Kapambwe Mulenga, Charles Chileshe, Nawa Mabuku, Dabwiso Banda, Fangyu Yan, Taro Kamigaki, Roma Chilengi, Nyambe Sinyange
Background: Cholera outbreaks have plagued Zambia for decades, with Lusaka district, the capital, being particularly vulnerable. Although the lack of sanitary toilet facilities and inadequate drainage systems were shown to be associated with the high cholera incidence in the early 2000s, it is unknown whether these environmental risk factors persisted in the outbreak that occurred in 2023-2024, which turned out to be the largest outbreak in the country's history. We investigated the geospatial patterns of cholera cases and associated environmental factors during the October 2023 to March 2024 cholera outbreak.
Methods: We conducted a geospatial analysis of the suspected cholera cases in Lusaka district, comprising seven constituencies and 94 townships. Patient information and geocoordinates were collected from suspected cases using electronic surveillance tools. The space-time scan statistics was performed to detect spatial and temporal clusters of cases. Spearman's rank correlation coefficient, were employed to examine the relationship between cholera incidence and various environmental factors, including access to Water, Sanitation, and Hygiene (WASH) facilities and equipment.
Results: Over the study period, 4,591 suspected cholera cases with geocoordinate data were identified, with incidence rates varying across the constituencies. Median cholera incidence (IQR) was 0.55 (0.27-1.44) in Lusaka, with higher incidence rates observed in unplanned residential areas. After the first case identification in Kanyama, cases and clusters were observed in different parts of Lusaka. Among 94 townships in Lusaka, cholera-suspected cases were identified in 86 of them. Among environmental factors analyzed for associations with the high cholera incidence, the proportion of individuals without soap and detergent at home (ρ = 0.457, p < 0.001) and those without water for hand washing at home (ρ = 0.421, p < 0.001) were significantly associated with increased cholera incidence.
Conclusion: The findings underscore the significance of environmental factors in cholera transmission, particularly in unplanned residential areas with inadequate access to WASH facilities which persist in the area. Improving WASH infrastructure and implementing tailored public health strategies, particularly for high-risk areas (e.g., unplanned residential areas), are crucial for mitigating cholera outbreaks in Lusaka District.
{"title":"Geospatial analysis of cholera outbreak in Lusaka, Zambia, between 2023 and 2024.","authors":"William Ngosa, Tadatsugu Imamura, Nyuma Mbewe, Joseph Seriki, Oscar Nzila, Fred Mfune, Godfrey Zulu, Chomba Mulando, Tizha Chiluba, Luo Miyanda, Agness Phiri, Lucy Sichone, Galion Mwape, Kapambwe Mulenga, Charles Chileshe, Nawa Mabuku, Dabwiso Banda, Fangyu Yan, Taro Kamigaki, Roma Chilengi, Nyambe Sinyange","doi":"10.1186/s41182-025-00718-4","DOIUrl":"https://doi.org/10.1186/s41182-025-00718-4","url":null,"abstract":"<p><strong>Background: </strong>Cholera outbreaks have plagued Zambia for decades, with Lusaka district, the capital, being particularly vulnerable. Although the lack of sanitary toilet facilities and inadequate drainage systems were shown to be associated with the high cholera incidence in the early 2000s, it is unknown whether these environmental risk factors persisted in the outbreak that occurred in 2023-2024, which turned out to be the largest outbreak in the country's history. We investigated the geospatial patterns of cholera cases and associated environmental factors during the October 2023 to March 2024 cholera outbreak.</p><p><strong>Methods: </strong>We conducted a geospatial analysis of the suspected cholera cases in Lusaka district, comprising seven constituencies and 94 townships. Patient information and geocoordinates were collected from suspected cases using electronic surveillance tools. The space-time scan statistics was performed to detect spatial and temporal clusters of cases. Spearman's rank correlation coefficient, were employed to examine the relationship between cholera incidence and various environmental factors, including access to Water, Sanitation, and Hygiene (WASH) facilities and equipment.</p><p><strong>Results: </strong>Over the study period, 4,591 suspected cholera cases with geocoordinate data were identified, with incidence rates varying across the constituencies. Median cholera incidence (IQR) was 0.55 (0.27-1.44) in Lusaka, with higher incidence rates observed in unplanned residential areas. After the first case identification in Kanyama, cases and clusters were observed in different parts of Lusaka. Among 94 townships in Lusaka, cholera-suspected cases were identified in 86 of them. Among environmental factors analyzed for associations with the high cholera incidence, the proportion of individuals without soap and detergent at home (ρ = 0.457, p < 0.001) and those without water for hand washing at home (ρ = 0.421, p < 0.001) were significantly associated with increased cholera incidence.</p><p><strong>Conclusion: </strong>The findings underscore the significance of environmental factors in cholera transmission, particularly in unplanned residential areas with inadequate access to WASH facilities which persist in the area. Improving WASH infrastructure and implementing tailored public health strategies, particularly for high-risk areas (e.g., unplanned residential areas), are crucial for mitigating cholera outbreaks in Lusaka District.</p>","PeriodicalId":23311,"journal":{"name":"Tropical Medicine and Health","volume":"53 1","pages":"42"},"PeriodicalIF":3.6,"publicationDate":"2025-03-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11954341/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143744050","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Background: Hypertension in pregnancy serves to screen for adverse perinatal outcomes. In 2017, the American College of Cardiology and American Heart Association recommended a new blood pressure category with lower hypertension thresholds, excluding pregnancy. This study aimed to explore the association between the 2017 redefined blood pressure categories in pregnancy and neonatal outcomes such as preterm birth and low birth weight.
Methods: This retrospective study used electronic records of the Maternal and Child Health Handbook registered by the Women and Infant Registration System. All women who had at least one antenatal care visit and delivery between January 2017 and April 2020 and between May and December 2022 were included in the study. A birth of less than 37 weeks was defined as preterm delivery. LBW was identified based on a newborn's birthweight of less than 2500 g. The maximum blood pressure across all antenatal care visits was classified based on the newly recommended criteria. A generalized linear model with binomial distribution and logit link function was used to evaluate the association between new blood pressure categories and neonatal outcomes at different levels of health facilities.
Results: We analyzed data from 825 women. Of these, the prevalence was 13.7% for elevated blood pressure, 15.2% for stage 1 hypertension, 4.5% for non-severe stage 2 hypertension and 1.2% for severe stage 2 hypertension. For lower-level facilities, no significant associations were identified between the redefined blood pressure category and preterm birth or low birthweight. At higher-level facilities, preterm birth was only significantly associated with severe stage 2 hypertension (adjusted odds ratio:10.94; 95% confidence interval:1.08-110.93; P = 0.04) and low birthweight showed no association with the redefined category.
Conclusion: This study revealed no association between redefined lower blood pressure threshold and preterm birth and low birthweight in under-resourced settings. However, previous studies in well-resourced countries with larger sample sizes also reported a significant association. Therefore, further investigations are required.
{"title":"The association between 2017 American College of Cardiology/American Heart Association guideline for hypertension and neonatal outcomes in Kenya: a retrospective study.","authors":"Mami Hitachi, Kazuchiyo Miyamichi, Sumihisa Honda, Violet Wanjihia, Samson Muuo Nzou, Satoshi Kaneko","doi":"10.1186/s41182-025-00724-6","DOIUrl":"10.1186/s41182-025-00724-6","url":null,"abstract":"<p><strong>Background: </strong>Hypertension in pregnancy serves to screen for adverse perinatal outcomes. In 2017, the American College of Cardiology and American Heart Association recommended a new blood pressure category with lower hypertension thresholds, excluding pregnancy. This study aimed to explore the association between the 2017 redefined blood pressure categories in pregnancy and neonatal outcomes such as preterm birth and low birth weight.</p><p><strong>Methods: </strong>This retrospective study used electronic records of the Maternal and Child Health Handbook registered by the Women and Infant Registration System. All women who had at least one antenatal care visit and delivery between January 2017 and April 2020 and between May and December 2022 were included in the study. A birth of less than 37 weeks was defined as preterm delivery. LBW was identified based on a newborn's birthweight of less than 2500 g. The maximum blood pressure across all antenatal care visits was classified based on the newly recommended criteria. A generalized linear model with binomial distribution and logit link function was used to evaluate the association between new blood pressure categories and neonatal outcomes at different levels of health facilities.</p><p><strong>Results: </strong>We analyzed data from 825 women. Of these, the prevalence was 13.7% for elevated blood pressure, 15.2% for stage 1 hypertension, 4.5% for non-severe stage 2 hypertension and 1.2% for severe stage 2 hypertension. For lower-level facilities, no significant associations were identified between the redefined blood pressure category and preterm birth or low birthweight. At higher-level facilities, preterm birth was only significantly associated with severe stage 2 hypertension (adjusted odds ratio:10.94; 95% confidence interval:1.08-110.93; P = 0.04) and low birthweight showed no association with the redefined category.</p><p><strong>Conclusion: </strong>This study revealed no association between redefined lower blood pressure threshold and preterm birth and low birthweight in under-resourced settings. However, previous studies in well-resourced countries with larger sample sizes also reported a significant association. Therefore, further investigations are required.</p>","PeriodicalId":23311,"journal":{"name":"Tropical Medicine and Health","volume":"53 1","pages":"41"},"PeriodicalIF":3.6,"publicationDate":"2025-03-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11948941/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143721628","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Background: The genus Chilomastix, including C. mesnili, consists of protozoa that parasitize the gastrointestinal tracts of various host organisms, including mammals (humans and non-human primates [NHP]), birds, and amphibians. Despite its widespread presence, Chilomastix spp. are generally considered non-pathogenic, which has led to limited molecular epidemiological studies on this genus. Consequently, genetic reference data for this genus remain scarce in GenBank. In this study, we aimed to establish a molecular classification for Chilomastix spp. by investigating the genetic diversity of isolates from humans and animals in a parasite-endemic region of Indonesia.
Methods: A cross-sectional molecular investigation was conducted in Wainyapu Village, Sumba Island, Indonesia. Stool samples were collected annually from 2013 to 2016 and screened using polymerase chain reaction (PCR) targeting the 18S small subunit ribosomal RNA gene (18S rRNA) of Chilomastix spp., followed by direct and subcloning sequencing. Genetic haplotypes of the partial 18S rRNA sequence (1386-1953 bp) from humans (n = 25), dogs (n = 1), pigs (n = 23), rats (n = 38), water buffaloes (n = 3), chickens (n = 10), and ducks (n = 1) were analyzed alongside reference sequences from humans, guinea pigs, leeches, frogs, and water sources using phylogenetic analyses.
Results: The prevalence of Chilomastix spp. was 7.0% (25/356) in humans and 19.7% (75/380) in animals. Phylogenetic analyses revealed the following monophyletic clusters as subtypes (STs): C. mesnili ST1 (human-NHP genotype), C. mesnili ST2-1 (human genotype), and C. mesnili ST2-2 (pig genotype). In addition, C. gallinarum-like haplotypes (chicken genotype) and C. bettencourti-like haplotypes, including ST1 (rat genotype) and ST2 (rat-buffalo genotype), were also identified.
Conclusions: The genetic references registered in this study, along with the revealed molecular classification of Chilomastix spp., are crucial for understanding the genetic diversity and host-specific dynamics of these parasites in endemic regions.
{"title":"Genetic diversity of genus Chilomastix: molecular classification of C. mesnili and other potential species variations in humans and animals.","authors":"Chuanhao Jiang, Siti Arifah Lacante, Tetsushi Mizuno, Din Syafruddin, Masaharu Tokoro","doi":"10.1186/s41182-025-00725-5","DOIUrl":"10.1186/s41182-025-00725-5","url":null,"abstract":"<p><strong>Background: </strong>The genus Chilomastix, including C. mesnili, consists of protozoa that parasitize the gastrointestinal tracts of various host organisms, including mammals (humans and non-human primates [NHP]), birds, and amphibians. Despite its widespread presence, Chilomastix spp. are generally considered non-pathogenic, which has led to limited molecular epidemiological studies on this genus. Consequently, genetic reference data for this genus remain scarce in GenBank. In this study, we aimed to establish a molecular classification for Chilomastix spp. by investigating the genetic diversity of isolates from humans and animals in a parasite-endemic region of Indonesia.</p><p><strong>Methods: </strong>A cross-sectional molecular investigation was conducted in Wainyapu Village, Sumba Island, Indonesia. Stool samples were collected annually from 2013 to 2016 and screened using polymerase chain reaction (PCR) targeting the 18S small subunit ribosomal RNA gene (18S rRNA) of Chilomastix spp., followed by direct and subcloning sequencing. Genetic haplotypes of the partial 18S rRNA sequence (1386-1953 bp) from humans (n = 25), dogs (n = 1), pigs (n = 23), rats (n = 38), water buffaloes (n = 3), chickens (n = 10), and ducks (n = 1) were analyzed alongside reference sequences from humans, guinea pigs, leeches, frogs, and water sources using phylogenetic analyses.</p><p><strong>Results: </strong>The prevalence of Chilomastix spp. was 7.0% (25/356) in humans and 19.7% (75/380) in animals. Phylogenetic analyses revealed the following monophyletic clusters as subtypes (STs): C. mesnili ST1 (human-NHP genotype), C. mesnili ST2-1 (human genotype), and C. mesnili ST2-2 (pig genotype). In addition, C. gallinarum-like haplotypes (chicken genotype) and C. bettencourti-like haplotypes, including ST1 (rat genotype) and ST2 (rat-buffalo genotype), were also identified.</p><p><strong>Conclusions: </strong>The genetic references registered in this study, along with the revealed molecular classification of Chilomastix spp., are crucial for understanding the genetic diversity and host-specific dynamics of these parasites in endemic regions.</p>","PeriodicalId":23311,"journal":{"name":"Tropical Medicine and Health","volume":"53 1","pages":"40"},"PeriodicalIF":3.6,"publicationDate":"2025-03-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11948686/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143721627","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}