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Mutational profile of pfdhfr, pfdhps, pfmdr1, pfcrt and pfk13 genes of P. falciparum associated with resistance to different antimalarial drugs in Osun state, southwestern Nigeria. 尼日利亚西南部Osun州恶性疟原虫pfdhfr、pfdhps、pfmdr1、pfcrt和pfk13基因突变谱与不同抗疟药物耐药性相关
IF 3.6 Q1 TROPICAL MEDICINE Pub Date : 2025-04-08 DOI: 10.1186/s41182-025-00732-6
Alexandra Martín Ramírez, Akeem Abiodun Akindele, Vicenta González Mora, Luz García, Nicole Lara, Eva de la Torre-Capitán Matías, Irene Molina de la Fuente, Sulaiman Adebayo Nassar, Thuy-Huong Ta-Tang, Agustín Benito, Pedro Berzosa

Background: Nigeria accounts for the greatest burden of malaria disease globally. Malaria control requires an effective treatment after diagnosis. The efficacy of antimalarial drugs can be assessed through the analysis of genetic changes associated with reduced drug sensitivity.

Methods: This study includes the analysis of the markers associated with artemisinin (pfk13), sulfadoxine-pyrimethamine (pfdhfr and pfdhps), and chloroquine and its derivatives (pfmdr1 and pfcrt) resistances, in blood samples collected from asymptomatic children in south-western Nigeria.

Results: The 25.95% of samples showed a number of mutations in pfk13 gene. Among those, the validated, C580Y, and the candidate, R515K, mutations by WHO were detected. Twenty-seven pfdhps different haplotypes were observed, with the haplotype ISGKAA as the most prevalent (18.80%), followed by IFGKAA (12.78%) and IAGKAA (11.28%). The VAGKGS was the most common haplotype carrying the I431V mutation (10.53%). Combinations of alleles in pfdhfr and pfdhps genes provided a 40.98% of samples with the partially resistant haplotype (IRNG). No samples exhibited the 'fully resistant' or 'super resistant' pfdhprf-pfdhps combinations, but one sample contained mutations at pfdhfr 51I, 59R, and 108N with pfdhps 431V, 436A, A437G and 540E. The analysis of pfcrt 72-76 variants disclosed a 12.12% of samples with the mutant-type (CVIET). No double mutant pfmdr1 haplotypes 86Y/1246Y (YY) were detected, nor was the haplotype formed by the alleles 86Y pfmdr1 + pfcrt 76 T (YT).

Conclusions: There was no evidence of parasite genomes harbouring multilocus mutations conferring multidrug resistance, although evidence of a validated (C580Y) and a candidate (R515K) mutation in pfk13 gene, high frequency pfdhfr mutant alleles and high variability of pfdhps haplotypes were found in this study, which provides a baseline information essential in monitoring P. falciparum resistances.

背景:尼日利亚是全球疟疾负担最重的国家。疟疾控制需要在诊断后进行有效治疗。抗疟药物的疗效可以通过分析与药物敏感性降低相关的基因变化来评估。方法:本研究包括分析尼日利亚西南部无症状儿童血液样本中与青蒿素(pfk13)、磺胺多辛-乙胺嘧啶(pfdhfr和pfdhps)以及氯喹及其衍生物(pfmdr1和pfcrt)耐药性相关的标志物。结果:25.95%的样本显示pfk13基因存在多个突变。其中检测到WHO已验证的C580Y和候选的R515K突变。共检测到27个不同单倍型的pfdhps,以ISGKAA单倍型最多(18.80%),其次是IFGKAA(12.78%)和IAGKAA(11.28%)。携带I431V突变的最常见的单倍型是VAGKGS(10.53%)。pfdhfr和pfdhps基因的等位基因组合提供了40.98%的部分抗性单倍型(IRNG)样本。没有样品显示出“完全耐药”或“超级耐药”的pfdhprf-pfdhps组合,但一个样品含有pfdhfr51i, 59R和108N与pfdhps431v, 436A, A437G和540E的突变。pfcrt 72-76变异分析显示12.12%的样本具有突变型(CVIET)。未检测到双突变pfmdr1单倍型86Y/1246Y (YY),也未检测到由86Y pfmdr1 + pfcrt 76 T (YT)等位基因形成的单倍型。结论:尽管在本研究中发现了pfk13基因的一个已验证的(C580Y)和一个候选的(R515K)突变、高频pfdhfr突变等位基因和pfdhps单倍型的高变异性的证据,但没有证据表明寄生虫基因组中含有具有多药耐药的多位点突变,这为监测恶性疟原虫的耐药性提供了必要的基线信息。
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引用次数: 0
Unveiling malaria vectors: species complex and surveillance insights from Sundergarh, Odisha, India. 揭示疟疾媒介:来自印度奥里萨邦Sundergarh的物种复杂性和监测见解。
IF 3.6 Q1 TROPICAL MEDICINE Pub Date : 2025-04-07 DOI: 10.1186/s41182-025-00719-3
Taru Singh, Syed Shah Areeb Hussain, K Pradhan, Monica Rawat, Ramesh Chand Dhiman

Background: Malaria is one of the most infectious life-threatening vector-borne diseases affected by climate change. Because of the emerging climate change problem, it was thought prudent to identify prevalent mosquito species and find the malaria parasite's presence in field-collected mosquitoes in Odisha.

Material and methods: The study was undertaken at four villages in the Rourkela, Sundergarh district of Odisha, India, from January 2018 to January 2020, generating entomological and climatic data. Field-collected mosquitoes were processed, and DNA was extracted, followed by multiplex PCR for differentiation of sibling species for Anopheles culicifacies and Anopheles fluviatilis mosquitoes. Enzyme-Linked immunosorbent assay was also performed for detection of circumsporozoite proteins of Plasmodium. Sequencing was performed, and a phylogenetic tree was constructed using the neighbor-joining method.

Results: For Anopheles culicifacies, 43.25% of mosquitoes belonged to sibling species C, followed by species B, A, and D. Similarly, for Anopheles fluviatilis, sibling species T was found in 57.5%, followed by species U and S. Sibling species were confirmed on the difference in the sequences of conserved regions of the 28S rDNA.

Conclusions: We can conclude that sibling species C (Anopheles culicifacies) was predominant in Rourkela, and sequencing further confirmed the presence of parasites (Plasmodium vivax) in Anopheles culicifacies as sibling species C.

背景:疟疾是受气候变化影响的最具传染性、威胁生命的病媒传播疾病之一。由于正在出现的气候变化问题,确定流行的蚊子种类并在奥里萨邦野外采集的蚊子中发现疟疾寄生虫的存在被认为是谨慎的。材料和方法:该研究于2018年1月至2020年1月在印度奥里萨邦Sundergarh区的Rourkela的四个村庄进行,收集了昆虫学和气候数据。对现场采集的按蚊进行处理,提取DNA,采用多重PCR方法对culicifacies按蚊和fluiatiis按蚊进行兄弟种分化。采用酶联免疫吸附法检测疟原虫环孢子子蛋白。测序并采用邻域连接法构建系统发育树。结果:库氏按蚊的同胞种C占43.25%,其次是B、A、d。河流按蚊的同胞种T占57.5%,其次是U、s。根据28S rDNA保守区序列差异,确定为同胞种。结论:鲁尔克拉省库氏按蚊属C兄弟种占优势,测序结果进一步证实库氏按蚊属C兄弟种存在间日疟原虫。
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引用次数: 0
Understanding the resurgence of mpox: key drivers and lessons from recent outbreaks in Africa. 了解麻疹死灰复燃:非洲最近疫情的主要驱动因素和教训。
IF 3.6 Q1 TROPICAL MEDICINE Pub Date : 2025-04-03 DOI: 10.1186/s41182-024-00678-1
Adewunmi Akingbola, Christopher Abiodun Adegbesan, Olajumoke Adewole, Courage Idahor, Tolani Odukoya, Emmanuel Nwaeze, Shekoni Mayowa, Owolabi Abdullahi, Petra Kerubo Mariaria

Mpox has re-emerged as a significant public health threat, particularly in Africa. This study explores the key drivers behind the recent resurgence, focusing on epidemiological trends, transmission dynamics, and lessons learned from recent outbreaks. The research involved a comprehensive review of recent mpox outbreaks, analyzing factors, such as socio-economic conditions, environmental influences, and genetic evolution. Findings indicate that the resurgence is linked to the cessation of smallpox vaccination, increased human-wildlife interactions, and rapid urbanization in endemic regions. The virus, which was previously confined to rural areas, has now spread to urban populations, and crossed national borders, driven by high population mobility and socio-economic instability. A notable shift in transmission dynamics has been observed, with increased human-to-human transmission, particularly among men who have sex with men (MSM), contributing to more severe and widespread outbreaks. The study highlights the urgent need to strengthen health systems in Africa, particularly in the areas of diagnostics, surveillance, and public health preparedness. Challenges such as inadequate laboratory infrastructure and delayed response mechanisms have exposed vulnerabilities in current public health frameworks. To prevent future outbreaks, targeted strategies must be implemented, including enhanced community engagement, improved access to vaccines and treatments, and timely, accurate reporting of cases. Coordinated global action is essential to prevent mpox from becoming a more persistent and widespread public health threat. This research discusses the importance of proactive measures and international cooperation in addressing the ongoing threat posed by mpox, particularly in regions with limited healthcare resources.

麻疹已重新成为一项重大的公共卫生威胁,特别是在非洲。本研究探讨了最近疫情死灰复燃背后的主要驱动因素,重点是流行病学趋势、传播动态以及从最近疫情中吸取的教训。这项研究包括对最近的麻疹疫情进行全面审查,分析社会经济条件、环境影响和遗传进化等因素。研究结果表明,天花死灰复燃与停止接种天花疫苗、人类与野生动物相互作用增加以及流行地区快速城市化有关。该病毒以前局限于农村地区,现在由于人口高度流动和社会经济不稳定,已蔓延到城市人口,并跨越国界。已观察到传播动态的显著变化,人与人之间的传播增加,特别是在男男性行为者之间的传播,导致更严重和更广泛的疫情。该研究强调迫切需要加强非洲的卫生系统,特别是在诊断、监测和公共卫生准备领域。实验室基础设施不足和反应机制滞后等挑战暴露了当前公共卫生框架的脆弱性。为了预防未来的疫情,必须实施有针对性的战略,包括加强社区参与,改善获得疫苗和治疗的机会,以及及时、准确地报告病例。协调一致的全球行动对于防止痘成为一种更加持久和广泛的公共卫生威胁至关重要。本研究讨论了主动措施和国际合作在解决麻疹持续威胁方面的重要性,特别是在医疗资源有限的地区。
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引用次数: 0
Clinical and epidemiological characteristics of the dengue outbreak of 2024: a multicenter observation from Bangladesh. 2024年登革热暴发的临床和流行病学特征:来自孟加拉国的多中心观察
IF 3.6 Q1 TROPICAL MEDICINE Pub Date : 2025-04-02 DOI: 10.1186/s41182-025-00691-y
Mohammad Jahid Hasan, Muna Islam, Tanjina Tabassum, Md Mohiuddin Khan, Md Khairul Islam, Rafiya Afroz, Rubaiya Rahman Tui, Mohammad Abdul Baset, Md Anwar Syed, Joarder Rakeen Manzoor, Mohiuddin Sharif, Tamanna Tabassum

Background: Dengue fever remains a significant public health challenge in Bangladesh. This study aimed to characterize the clinical and epidemiological profiles of confirmed dengue cases during the 2024 outbreak in Bangladesh.

Methods: This observational study was conducted from June to September 2024 in four tertiary care hospitals across Bangladesh located in four administrative divisions. A total of 401 laboratory-confirmed (NS1- or IgM-positive) dengue patients aged ≥ 12 years were included. Demographic data, clinical presentations, and laboratory findings were collected through face‒to-face interviews. The revised WHO 2009 dengue case classification was used for severity assessment of dengue patients. Descriptive and inferential statistics were used to summarize the results.

Results: The mean age of patients with dengue fever was 29.81 ± 11.64 (SD) years, with 7.2% of the patients being adolescents (aged 12-17 years). A clear male predominance (88.3%) was observed. Overall, 65.6% of patients had dengue with warning signs, and 9% had severe dengue. Fever (94.3%), headache (70.3%), myalgia (66.1%), and gastrointestinal symptoms such as nausea (49.9%) and abdominal pain (43.9%) were common symptoms. The median in-hospital stay of both non-severe and severe cases were 4 & 5 days, respectively. The in-hospital mortality rate was 0.75%, which was significantly higher among severe dengue patients (5.6%).

Conclusion: The 2024 dengue outbreak in Bangladesh predominantly affected young adult males, with a notable prevalence of gastrointestinal symptoms alongside classic dengue manifestations.

背景:登革热在孟加拉国仍然是一个重大的公共卫生挑战。本研究旨在描述2024年孟加拉国暴发期间登革热确诊病例的临床和流行病学概况。方法:这项观察性研究于2024年6月至9月在孟加拉国四个行政区的四家三级保健医院进行。共纳入401例年龄≥12岁的实验室确诊(NS1或igm阳性)登革热患者。通过面对面访谈收集人口统计数据、临床表现和实验室结果。修订的世卫组织2009年登革热病例分类用于评估登革热患者的严重程度。采用描述性统计和推理统计对结果进行总结。结果:登革热患者的平均年龄为29.81±11.64 (SD)岁,其中青少年(12-17岁)占7.2%。男性明显占优势(88.3%)。总体而言,65.6%的患者患有有警告信号的登革热,9%的患者患有严重登革热。常见症状为发热(94.3%)、头痛(70.3%)、肌痛(66.1%)、恶心(49.9%)、腹痛(43.9%)等胃肠道症状。非重症和重症病例的住院时间中位数分别为4天和5天。住院死亡率为0.75%,重症登革热患者的住院死亡率显著高于重症登革热患者(5.6%)。结论:孟加拉国2024年登革热疫情主要影响年轻成年男性,除典型登革热表现外,胃肠道症状显著流行。
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引用次数: 0
Development of a spirulina feed effective only for the two larval stages of Schistosoma mansoni, not the intermediate host mollusc. 一种螺旋藻饲料的开发只对曼氏血吸虫的两个幼虫阶段有效,而不是中间寄主软体动物。
IF 3.6 Q1 TROPICAL MEDICINE Pub Date : 2025-04-02 DOI: 10.1186/s41182-025-00727-3
Takashi Kumagai, Masaaki Miyamoto, Yurino Koseki, Yasuyuki Imai, Tomoko Ishino

Background: Schistosomiasis control relies primarily on mass drug administration with praziquantel. However, persistent reinfection and high treatment costs remain significant challenges. Current strategies largely overlook intermediate host molluscs and infected larvae, which are critical sources of transmission. Niclosamide, the only widely used molluscicide, is limited by its high environmental toxicity and cost, creating a need for safer and more sustainable alternatives.

Methods: In this study, we investigated the effects of a spirulina-based feed derived from the cyanobacterium Arthrospira platensis on infected snails. Laboratory experiments were conducted to assess the impact of spirulina on cercariae release from infected snails. We further examined the safety profile of spirulina by testing its effects on both snails and Japanese medaka. Additionally, the direct effects of spirulina constituents on cercariae viability were evaluated.

Results: Snails fed spirulina presented a significant reduction in cercariae output, with reductions of up to 88%. The reduction was concentration dependent and more pronounced during the early stages of infection. Spirulina had no toxic effects on either snails or Japanese medakas. Further analysis revealed that the active ingredient causing the increase in mortality in cercaria was linoleic acid, a common ingredient in both the spirulina feed and the base feed, and a direct anti-parasitic effect of linoleic acid was confirmed.

Conclusion: Spirulina represents a promising, environmentally safe feed that can reduce the transmission of schistosomiasis by directly impacting schistosome larvae within infected snails and reducing the release of cercariae. This novel approach offers a sustainable and nontoxic alternative to current molluscicidal strategies and may contribute to more effective and environmentally friendly schistosomiasis control.

背景:血吸虫病控制主要依靠吡喹酮的大量给药。然而,持续的再感染和高昂的治疗费用仍然是重大挑战。目前的策略在很大程度上忽略了中间宿主软体动物和受感染的幼虫,它们是传播的关键来源。氯硝柳胺是唯一被广泛使用的杀螺剂,由于其高环境毒性和高成本而受到限制,因此需要更安全、更可持续的替代品。方法:在本研究中,我们研究了从蓝藻中提取的螺旋藻饲料对感染蜗牛的影响。通过室内实验研究了螺旋藻对钉螺尾蚴释放的影响。我们通过测试螺旋藻对蜗牛和日本medaka的影响,进一步研究了螺旋藻的安全性。此外,还评价了螺旋藻成分对尾蚴活力的直接影响。结果:钉螺喂螺旋藻后尾蚴数量明显减少,减少幅度达88%。这种减少是浓度依赖性的,在感染的早期阶段更为明显。螺旋藻对钉螺和日本田螺均无毒性作用。进一步分析表明,螺旋藻饲料和基础饲料中常见的亚油酸是导致尾蚴死亡率升高的有效成分,并证实了亚油酸具有直接的抗寄生作用。结论:螺旋藻是一种很有前景的环保饲料,可以直接影响血吸虫幼虫,减少尾蚴的释放,从而减少血吸虫病的传播。这种新方法为目前的杀螺策略提供了一种可持续和无毒的替代方法,并可能有助于更有效和更环保的血吸虫病控制。
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引用次数: 0
Reinvigorating AMR resilience: leveraging CRISPR-Cas technology potentials to combat the 2024 WHO bacterial priority pathogens for enhanced global health security-a systematic review. 重振抗菌素耐药性复原力:利用CRISPR-Cas技术潜力抗击2024年世卫组织细菌性重点病原体,以加强全球卫生安全——一项系统综述
IF 3.6 Q1 TROPICAL MEDICINE Pub Date : 2025-04-02 DOI: 10.1186/s41182-025-00728-2
Olalekan John Okesanya, Mohamed Mustaf Ahmed, Jerico Bautista Ogaya, Blessing Olawunmi Amisu, Bonaventure Michael Ukoaka, Olaniyi Abideen Adigun, Emery Manirambona, Olakulehin Adebusuyi, Zhinya Kawa Othman, Olanegan Gloria Oluwakemi, Oluwaseunayo Deborah Ayando, Maria Ivy Rochelle S Tan, Nimat Bola Idris, Hassan Hakeem Kayode, Tolutope Adebimpe Oso, Musa Ahmed, M B N Kouwenhoven, Adamu Muhammad Ibrahim, Don Eliseo Lucero-Prisno
<p><strong>Background: </strong>Antimicrobial resistance (AMR) poses a global health threat, particularly in low- and middle-income countries (LMICs). Clustered regularly interspaced short palindromic repeats (CRISPR)-Cas system technology offers a promising tool to combat AMR by targeting and disabling resistance genes in WHO bacterial priority pathogens. Thus, we systematically reviewed the potential of CRISPR-Cas technology to address AMR.</p><p><strong>Methods: </strong>This systematic review adhered to the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) guidelines. A comprehensive literature search was conducted using the Scopus and PubMed databases, focusing on publications from 2014 to June 2024. Keywords included "CRISPR/Cas," "antimicrobial resistance," and "pathogen." The eligibility criteria required original studies involving CRISPR/Cas systems that targeted AMR. Data were extracted from eligible studies, qualitatively synthesized, and assessed for bias using the Joanna Briggs Institute (JBI)-standardized tool.</p><p><strong>Results: </strong>Data from 48 eligible studies revealed diverse CRISPR-Cas systems, including CRISPR-Cas9, CRISPR-Cas12a, and CRISPR-Cas3, targeting various AMR genes, such as blaOXA-232, blaNDM, blaCTX-M, ermB, vanA, mecA, fosA3, blaKPC, and mcr-1, which are responsible for carbapenem, cephalosporin, methicillin, macrolide, vancomycin, colistin, and fosfomycin resistance. Some studies have explored the role of CRISPR in virulence gene suppression, including enterotoxin genes, tsst1, and iutA in Staphylococcus aureus and Klebsiella pneumoniae. Delivery mechanisms include bacteriophages, nanoparticles, electro-transformation, and conjugative plasmids, which demonstrate high efficiency in vitro and in vivo. CRISPR-based diagnostic applications have demonstrated high sensitivity and specificity, with detection limits as low as 2.7 × 10<sup>2</sup> CFU/mL, significantly outperforming conventional methods. Experimental studies have reported significant reductions in resistant bacterial populations and complete suppression of the targeted strains. Engineered phagemid particles and plasmid-curing systems have been shown to eliminate IncF plasmids, cured plasmids carrying vanA, mcr-1, and blaNDM with 94% efficiency, and restore antibiotic susceptibility. Gene re-sensitization strategies have been used to restore fosfomycin susceptibility in E. coli and eliminate blaKPC-2-mediated carbapenem resistance in MDR bacteria. Whole-genome sequencing and bioinformatics tools have provided deeper insights into CRISPR-mediated defense mechanisms. Optimization strategies have significantly enhanced gene-editing efficiencies, offering a promising approach for tackling AMR in high-priority WHO pathogens.</p><p><strong>Conclusions: </strong>CRISPR-Cas technology has the potential to address AMR across priority WHO pathogens. While promising, challenges in optimizing in vivo delivery, mitigating potential res
背景:抗菌素耐药性(AMR)构成全球健康威胁,特别是在低收入和中等收入国家(LMICs)。聚集规律间隔短回文重复序列(CRISPR)-Cas系统技术通过靶向和禁用世卫组织细菌重点病原体中的耐药基因,为抗击抗生素耐药性提供了一种很有前景的工具。因此,我们系统地回顾了CRISPR-Cas技术解决AMR的潜力。方法:本系统评价遵循系统评价和荟萃分析的首选报告项目(PRISMA)指南。使用Scopus和PubMed数据库进行全面的文献检索,重点检索2014年至2024年6月的出版物。关键词包括“CRISPR/Cas”、“抗菌素耐药性”和“病原体”。资格标准要求涉及靶向AMR的CRISPR/Cas系统的原始研究。从符合条件的研究中提取数据,进行定性合成,并使用乔安娜布里格斯研究所(JBI)标准化工具评估偏倚。结果:来自48项符合条件的研究的数据显示,多种CRISPR-Cas系统,包括CRISPR-Cas9、CRISPR-Cas12a和CRISPR-Cas3,靶向各种AMR基因,如blaOXA-232、blaNDM、blaCTX-M、ermB、vanA、mecA、fosA3、blaKPC和mcr-1,这些基因负责碳青霉烯类、头孢菌素、甲氧西林、大环内酯、万古霉素、粘菌素和磷霉素耐药。一些研究探索了CRISPR在抑制毒力基因中的作用,包括在金黄色葡萄球菌和肺炎克雷伯菌中的肠毒素基因、tsst1和iutA。传递机制包括噬菌体、纳米颗粒、电转化和共轭质粒,它们在体外和体内都表现出高效率。基于crispr的诊断应用具有较高的灵敏度和特异性,检出限低至2.7 × 102 CFU/mL,显著优于传统方法。实验研究报告了耐药细菌种群的显著减少和目标菌株的完全抑制。工程噬菌体颗粒和质粒固化系统已被证明能够以94%的效率消除IncF质粒、携带vanA、mcr-1和blaNDM的固化质粒,并恢复抗生素敏感性。基因再致敏策略已被用于恢复大肠杆菌对磷霉素的敏感性,并消除耐多药细菌中blakpc -2介导的碳青霉烯耐药性。全基因组测序和生物信息学工具为crispr介导的防御机制提供了更深入的见解。优化策略显著提高了基因编辑效率,为解决世卫组织高优先级病原体的抗菌素耐药性提供了一种有希望的方法。结论:CRISPR-Cas技术具有解决世卫组织重点病原体抗菌素耐药性问题的潜力。虽然前景看好,但必须解决优化体内给药、减轻潜在耐药性和克服伦理监管障碍方面的挑战,以促进临床转化。
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引用次数: 0
Genetic structure and geographical distribution of Bithynia siamensis sensu lato from Khong and Mounlapamok districts, Champasak Province, Laos. 老挝占巴塞省Khong和Mounlapamok地区暹罗bithynia siamensis sensu lato的遗传结构和地理分布。
IF 3.6 Q1 TROPICAL MEDICINE Pub Date : 2025-04-02 DOI: 10.1186/s41182-025-00720-w
Naruemon Bunchom, Weerachai Saijuntha, Virasack Bounavong, Bounmixay Pakouakeu, Parita Hansana, Pheovaly Soundala, Chavanut Jaroenchaiwattanachote, Takeshi Agatsuma, Marcello Otake Sato, Philippe Buchy, Moritoshi Iwagami

Background: Bithynia spp., a key intermediate host of Opisthorchis viverrini, is widely distributed in the lower Mekong sub-region, where opisthorchiasis remains a major public health concern. Understanding the genetic diversity and population structure of these snails is crucial for disease control. Bithynia siamensis sensu lato has been classified into three genetic lineages (I-III) based on cytochrome c oxidase subunit 1 (cox1) and 16S ribosomal RNA (16S rRNA) sequence analysis. This study focuses on Champasak Province, Laos, a highly endemic area of opisthorchiasis with limited genetic data on Bithynia spp.

Methods: Bithynia snails were collected from 12 villages in Khong and Mounlapamok districts, Champasak Province, Laos, between February and August 2024. To compare with previous reports, a total of 246 and 139 samples were analyzed using cox1 and 16S rRNA markers, respectively. Genetic diversity, genetic differentiation, and genetic structure were assessed based on these markers. Haplotype networks were constructed based on cox1 and 16S RNA sequences to elucidate the genetic lineage of these samples.

Results: In the present study, only Bithynia siamensis goniomphalos was identified, while B. s. siamensis and B. funiculata were not found. Our findings revealed that both cox1 and 16S rRNA sequences exhibited high haplotype diversity among populations but relatively low nucleotide diversity. Two lineages of B. s. goniomphalos (lineages II and III) were detected in the studied areas, exhibiting significant genetic structuring among groups of snail populations from different villages in each lineage. Notably, lineage II was identified in Laos for the first time. The distribution of lineage II was observed near the southern border of Laos and Cambodia.

Conclusions: This study is the first to use DNA analysis to investigate Bithynia spp. in opisthorchiasis-endemic areas of Champasak Province, where B. s. goniomphalos lineages II and III were detected, but lineage I was not found. Our finding suggested that geographic or environmental factors influence the distribution of specific Bithynia lineages in this region. Many O. viverrini endemic areas in Southeast Asia still lack genetic data on Bithynia snails which could provide valuable insights into the transmission dynamics of opisthorchiasis. Therefore, further investigations should be conducted in these areas using cox1 and 16S rRNA sequences for comparison with previous studies.

背景:Bithynia spp是一种重要的中间宿主,广泛分布于湄公河下游次区域,该地区的蛇喉病仍然是一个主要的公共卫生问题。了解这些蜗牛的遗传多样性和种群结构对疾病控制至关重要。根据细胞色素c氧化酶亚基1 (cox1)和16S核糖体RNA (16S rRNA)的序列分析,将褐斑斑鱼(Bithynia siamensis sensu lato)分为3个遗传谱系(I-III)。方法:于2024年2月至8月在老挝占巴塞省孔县和Mounlapamok县的12个村庄采集双螺。为了与之前的报道进行比较,我们分别使用cox1和16S rRNA标记分析了246个和139个样本。基于这些标记对遗传多样性、遗传分化和遗传结构进行了评价。基于cox1和16S RNA序列构建单倍型网络,阐明这些样本的遗传谱系。结果:本研究中只鉴定到双翅虫(Bithynia siamensis goniomphalos),未发现双翅虫(b.s. siamensis)和双翅虫(b.s. funiculata)。我们的研究结果表明,cox1和16S rRNA序列在人群中具有较高的单倍型多样性,但核苷酸多样性相对较低。在研究区发现了2个钉螺世系(II和III世系),每个世系中不同村庄的钉螺种群具有明显的遗传结构。值得注意的是,II系首次在老挝被发现。ⅱ系分布在老挝和柬埔寨南部边界附近。结论:本研究首次利用DNA分析方法对占巴塞省血吸虫病流行地区的Bithynia种进行了调查,在该地区发现了B. s. goniomphalos II和III家系,但未发现I家系。研究结果表明,地理或环境因素影响了该地区特定鱼系的分布。东南亚许多产弧菌流行地区仍然缺乏关于双螺螺的遗传数据,这些数据可以为了解蛇胸片病的传播动态提供有价值的见解。因此,需要在这些领域使用cox1和16S rRNA序列进行进一步的研究,与以往的研究进行比较。
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引用次数: 0
Geospatial analysis of cholera outbreak in Lusaka, Zambia, between 2023 and 2024. 2023 年至 2024 年期间赞比亚卢萨卡爆发霍乱的地理空间分析。
IF 3.6 Q1 TROPICAL MEDICINE Pub Date : 2025-03-28 DOI: 10.1186/s41182-025-00718-4
William Ngosa, Tadatsugu Imamura, Nyuma Mbewe, Joseph Seriki, Oscar Nzila, Fred Mfune, Godfrey Zulu, Chomba Mulando, Tizha Chiluba, Luo Miyanda, Agness Phiri, Lucy Sichone, Galion Mwape, Kapambwe Mulenga, Charles Chileshe, Nawa Mabuku, Dabwiso Banda, Fangyu Yan, Taro Kamigaki, Roma Chilengi, Nyambe Sinyange

Background: Cholera outbreaks have plagued Zambia for decades, with Lusaka district, the capital, being particularly vulnerable. Although the lack of sanitary toilet facilities and inadequate drainage systems were shown to be associated with the high cholera incidence in the early 2000s, it is unknown whether these environmental risk factors persisted in the outbreak that occurred in 2023-2024, which turned out to be the largest outbreak in the country's history. We investigated the geospatial patterns of cholera cases and associated environmental factors during the October 2023 to March 2024 cholera outbreak.

Methods: We conducted a geospatial analysis of the suspected cholera cases in Lusaka district, comprising seven constituencies and 94 townships. Patient information and geocoordinates were collected from suspected cases using electronic surveillance tools. The space-time scan statistics was performed to detect spatial and temporal clusters of cases. Spearman's rank correlation coefficient, were employed to examine the relationship between cholera incidence and various environmental factors, including access to Water, Sanitation, and Hygiene (WASH) facilities and equipment.

Results: Over the study period, 4,591 suspected cholera cases with geocoordinate data were identified, with incidence rates varying across the constituencies. Median cholera incidence (IQR) was 0.55 (0.27-1.44) in Lusaka, with higher incidence rates observed in unplanned residential areas. After the first case identification in Kanyama, cases and clusters were observed in different parts of Lusaka. Among 94 townships in Lusaka, cholera-suspected cases were identified in 86 of them. Among environmental factors analyzed for associations with the high cholera incidence, the proportion of individuals without soap and detergent at home (ρ = 0.457, p < 0.001) and those without water for hand washing at home (ρ = 0.421, p < 0.001) were significantly associated with increased cholera incidence.

Conclusion: The findings underscore the significance of environmental factors in cholera transmission, particularly in unplanned residential areas with inadequate access to WASH facilities which persist in the area. Improving WASH infrastructure and implementing tailored public health strategies, particularly for high-risk areas (e.g., unplanned residential areas), are crucial for mitigating cholera outbreaks in Lusaka District.

背景:几十年来,霍乱疫情一直困扰着赞比亚,首都卢萨卡地区尤其脆弱。尽管缺乏卫生厕所设施和排水系统不足被证明与21世纪初的高霍乱发病率有关,但尚不清楚这些环境风险因素是否在2023-2024年发生的疫情中持续存在,这是该国历史上最大的疫情。我们调查了2023年10月至2024年3月霍乱暴发期间霍乱病例的地理空间格局和相关环境因素。方法:我们对卢萨卡区7个选区和94个乡镇的疑似霍乱病例进行了地理空间分析。使用电子监测工具收集疑似病例的患者信息和地理坐标。通过时空扫描统计来检测病例的时空聚类。采用Spearman等级相关系数来检验霍乱发病率与各种环境因素之间的关系,包括获得水、环境卫生和个人卫生(WASH)设施和设备的情况。结果:在研究期间,确定了4 591例具有地理坐标数据的霍乱疑似病例,各选区的发病率各不相同。卢萨卡的霍乱发病率中位数(IQR)为0.55(0.27-1.44),未规划的居民区发病率较高。在肯亚马发现首例病例后,在卢萨卡不同地区观察到病例和聚集性病例。在卢萨卡的94个乡镇中,有86个乡镇发现了霍乱疑似病例。在分析与霍乱高发病率相关的环境因素中,家中没有肥皂和洗涤剂的个体比例(ρ = 0.457, p)结论:研究结果强调了环境因素在霍乱传播中的重要性,特别是在该地区持续存在的缺乏清洁设施的未经规划的居民区。改善讲卫生基础设施和实施有针对性的公共卫生战略,特别是在高风险地区(例如,未规划的居民区),对于减轻卢萨卡地区的霍乱疫情至关重要。
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引用次数: 0
The association between 2017 American College of Cardiology/American Heart Association guideline for hypertension and neonatal outcomes in Kenya: a retrospective study. 2017年美国心脏病学会/美国心脏协会高血压指南与肯尼亚新生儿结局之间的关系:一项回顾性研究。
IF 3.6 Q1 TROPICAL MEDICINE Pub Date : 2025-03-27 DOI: 10.1186/s41182-025-00724-6
Mami Hitachi, Kazuchiyo Miyamichi, Sumihisa Honda, Violet Wanjihia, Samson Muuo Nzou, Satoshi Kaneko

Background: Hypertension in pregnancy serves to screen for adverse perinatal outcomes. In 2017, the American College of Cardiology and American Heart Association recommended a new blood pressure category with lower hypertension thresholds, excluding pregnancy. This study aimed to explore the association between the 2017 redefined blood pressure categories in pregnancy and neonatal outcomes such as preterm birth and low birth weight.

Methods: This retrospective study used electronic records of the Maternal and Child Health Handbook registered by the Women and Infant Registration System. All women who had at least one antenatal care visit and delivery between January 2017 and April 2020 and between May and December 2022 were included in the study. A birth of less than 37 weeks was defined as preterm delivery. LBW was identified based on a newborn's birthweight of less than 2500 g. The maximum blood pressure across all antenatal care visits was classified based on the newly recommended criteria. A generalized linear model with binomial distribution and logit link function was used to evaluate the association between new blood pressure categories and neonatal outcomes at different levels of health facilities.

Results: We analyzed data from 825 women. Of these, the prevalence was 13.7% for elevated blood pressure, 15.2% for stage 1 hypertension, 4.5% for non-severe stage 2 hypertension and 1.2% for severe stage 2 hypertension. For lower-level facilities, no significant associations were identified between the redefined blood pressure category and preterm birth or low birthweight. At higher-level facilities, preterm birth was only significantly associated with severe stage 2 hypertension (adjusted odds ratio:10.94; 95% confidence interval:1.08-110.93; P = 0.04) and low birthweight showed no association with the redefined category.

Conclusion: This study revealed no association between redefined lower blood pressure threshold and preterm birth and low birthweight in under-resourced settings. However, previous studies in well-resourced countries with larger sample sizes also reported a significant association. Therefore, further investigations are required.

背景:妊娠期高血压可用于筛查不良围产期结局。2017年,美国心脏病学会和美国心脏协会推荐了一个新的血压类别,高血压阈值较低,不包括怀孕。本研究旨在探讨2017年重新定义的妊娠血压类别与新生儿结局(如早产和低出生体重)之间的关系。方法:回顾性研究采用妇幼登记系统登记的《妇幼保健手册》电子记录。所有在2017年1月至2020年4月以及2022年5月至12月期间至少进行过一次产前检查和分娩的女性都被纳入了这项研究。少于37周的出生被定义为早产。LBW是根据新生儿出生体重低于2500克确定的。根据新推荐的标准对所有产前检查的最大血压进行分类。采用二项分布的广义线性模型和logit关联函数来评价不同级别卫生机构新生血压类别与新生儿结局之间的关系。结果:我们分析了825名女性的数据。其中,高血压患病率为13.7%,1期高血压患病率为15.2%,非严重2期高血压患病率为4.5%,严重2期高血压患病率为1.2%。在较低水平的医疗机构中,重新定义的血压类别与早产或低出生体重之间没有明显的关联。在更高级别的医疗机构,早产仅与严重的2期高血压显著相关(校正优势比:10.94;95%置信区间:1.08-110.93;P = 0.04),低出生体重与重新定义的分类无关。结论:本研究显示,在资源不足的环境中,重新定义的低血压阈值与早产和低出生体重之间没有关联。然而,先前在资源充足、样本量较大的国家进行的研究也报告了显著的关联。因此,需要进一步调查。
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引用次数: 0
Genetic diversity of genus Chilomastix: molecular classification of C. mesnili and other potential species variations in humans and animals. 辣椒属的遗传多样性:人类和动物中其他潜在物种变异的分子分类。
IF 3.6 Q1 TROPICAL MEDICINE Pub Date : 2025-03-27 DOI: 10.1186/s41182-025-00725-5
Chuanhao Jiang, Siti Arifah Lacante, Tetsushi Mizuno, Din Syafruddin, Masaharu Tokoro

Background: The genus Chilomastix, including C. mesnili, consists of protozoa that parasitize the gastrointestinal tracts of various host organisms, including mammals (humans and non-human primates [NHP]), birds, and amphibians. Despite its widespread presence, Chilomastix spp. are generally considered non-pathogenic, which has led to limited molecular epidemiological studies on this genus. Consequently, genetic reference data for this genus remain scarce in GenBank. In this study, we aimed to establish a molecular classification for Chilomastix spp. by investigating the genetic diversity of isolates from humans and animals in a parasite-endemic region of Indonesia.

Methods: A cross-sectional molecular investigation was conducted in Wainyapu Village, Sumba Island, Indonesia. Stool samples were collected annually from 2013 to 2016 and screened using polymerase chain reaction (PCR) targeting the 18S small subunit ribosomal RNA gene (18S rRNA) of Chilomastix spp., followed by direct and subcloning sequencing. Genetic haplotypes of the partial 18S rRNA sequence (1386-1953 bp) from humans (n = 25), dogs (n = 1), pigs (n = 23), rats (n = 38), water buffaloes (n = 3), chickens (n = 10), and ducks (n = 1) were analyzed alongside reference sequences from humans, guinea pigs, leeches, frogs, and water sources using phylogenetic analyses.

Results: The prevalence of Chilomastix spp. was 7.0% (25/356) in humans and 19.7% (75/380) in animals. Phylogenetic analyses revealed the following monophyletic clusters as subtypes (STs): C. mesnili ST1 (human-NHP genotype), C. mesnili ST2-1 (human genotype), and C. mesnili ST2-2 (pig genotype). In addition, C. gallinarum-like haplotypes (chicken genotype) and C. bettencourti-like haplotypes, including ST1 (rat genotype) and ST2 (rat-buffalo genotype), were also identified.

Conclusions: The genetic references registered in this study, along with the revealed molecular classification of Chilomastix spp., are crucial for understanding the genetic diversity and host-specific dynamics of these parasites in endemic regions.

背景:包括C. mesnili在内的Chilomastix属由寄生于各种宿主生物胃肠道的原生动物组成,包括哺乳动物(人类和非人灵长类[NHP])、鸟类和两栖动物。尽管其广泛存在,但Chilomastix spp通常被认为是非致病性的,这导致了对该属的分子流行病学研究有限。因此,该属的遗传参考数据在GenBank中仍然稀缺。在本研究中,我们旨在通过对印度尼西亚寄生虫流行地区的人类和动物分离物的遗传多样性进行调查,建立Chilomastix spp.的分子分类。方法:在印度尼西亚松巴岛Wainyapu村进行横断面分子研究。2013 - 2016年每年收集粪便样本,采用针对Chilomastix spp. 18S小亚基核糖体RNA基因(18S rRNA)的聚合酶链反应(PCR)进行筛选,然后进行直接测序和亚克隆测序。采用系统发育分析方法,分析了来自人类(n = 25)、狗(n = 1)、猪(n = 23)、大鼠(n = 38)、水牛(n = 3)、鸡(n = 10)和鸭(n = 1)的18S rRNA部分序列(1386-1953 bp)的遗传单倍型,以及来自人类、豚鼠、水蛭、青蛙和水源的参考序列。结果:人类和动物的感染率分别为7.0%(25/356)和19.7%(75/380)。系统发育分析显示以下单系聚群为亚型(STs): mesnili C. ST1(人类nhp基因型),mesnili C. ST2-1(人类基因型)和mesnili C. ST2-2(猪基因型)。此外,还鉴定出鸡C. gallinarum-like单倍型(鸡基因型)和C. bettencourti-like单倍型,包括ST1(大鼠基因型)和ST2(大鼠-水牛基因型)。结论:本研究所记录的遗传参考文献以及所揭示的Chilomastix spp.的分子分类,对于了解这些寄生虫在流行地区的遗传多样性和宿主特异性动态具有重要意义。
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Tropical Medicine and Health
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