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Utilization of dual catalysts for high-yield boron nitride nanotube synthesis via chemical vapor deposition. 利用双催化剂化学气相沉积法合成高产氮化硼纳米管。
IF 1.4 4区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-11-05 eCollection Date: 2025-01-01 DOI: 10.55730/1300-0527.3772
Şaban Kalay

The direct synthesis of boron nitride nanotubes (BNNTs) via chemical vapor deposition (CVD) in high-temperature furnaces remains highly challenging due to difficulties in optimizing key experimental parameters such as synthesis temperature and catalyst composition. These challenges often result in uncontrolled growth behavior, adversely affecting the quality and yield of the BNNTs. In this study, colemanite was effectively utilized as a boron source for the high-yield synthesis of directionally aligned BNNTs. The synthesis was carried out using a CVD method that used a dual-catalyst system comprising Fe2O3 and MgO in conjunction with a silicon carbide template under high-temperature conditions. The resulting BNNTs were characterized using scanning electron microscopy and high-resolution transmission electron microscopy, as well as spectroscopic methods including Fourier-transform infrared spectroscopy, Raman spectroscopy, X-ray diffraction, and X-ray photoelectron spectroscopy. This innovative CVD strategy offers a cost effective and efficient way to produce high-purity BNNTs from colemanite, significantly expanding their potential for various applications.

化学气相沉积法(CVD)在高温炉中直接合成氮化硼纳米管(BNNTs),由于在优化合成温度和催化剂组成等关键实验参数方面存在困难,因此具有很大的挑战性。这些挑战往往导致不受控制的生长行为,对bnnt的质量和产量产生不利影响。在本研究中,我们有效地利用colemanite作为硼源,高效地合成了定向排列的bnnt。在高温条件下,采用CVD法合成了由Fe2O3和MgO组成的双催化剂体系和碳化硅模板。利用扫描电子显微镜和高分辨率透射电子显微镜以及傅立叶变换红外光谱、拉曼光谱、x射线衍射和x射线光电子能谱等光谱方法对所得bnnt进行了表征。这种创新的CVD策略提供了一种具有成本效益和效率的方法,从colemanite生产高纯度bnnt,显着扩大了其各种应用的潜力。
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引用次数: 0
Efficient recovery of Y3+ from aqueous media using MDLM technique: transport behavior and kinetic modeling. 利用MDLM技术从水介质中高效回收Y3+:输运行为和动力学建模。
IF 1.4 4区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-10-31 eCollection Date: 2025-01-01 DOI: 10.55730/1300-0527.3771
Volkan Demirel, Ramazan Donat, Hacer Şensöz

This study investigates the extraction behavior of Y3+ ions using a Multi-Dropped Liquid Membrane (MDLM) system that employs di(2-ethylhexyl) phosphoric acid (D2EHPA) as the carrier ligand. The focus is on the system's ability to transport ions between aqueous phases selectively. The extracted complex was analyzed spectrophotometrically via ultraviolet-visible (UV-Vis) measurements after complexation with 0.05% Arsenazo III. The aim of this study was to determine the influence of the optimum D2EHPA carrier concentration, together with the pH and temperature conditions of the donor and acceptor phases, on the system's extraction performance. Accordingly, a series of extraction experiments was performed at different D2EHPA concentrations, pH values, and temperatures to assess their combined effects on transport kinetics. The MDLM system achieved a maximum transport efficiency of 99.90% for Y3+ ions at a D2EHPA concentration of 0.0045 mol/L, with a corresponding extraction time of 160 min. The shortest transport time of 120 min was observed at a carrier concentration of 0.0075 mol/L, confirming the strong influence of carrier concentration on extraction kinetics. The calculated low activation energy of 31.446 kJ/mol suggests that the transport of Y3+ ions through the MDLM system into the organic phase containing D2EHPA is diffusion-controlled.

本文研究了以二(2-乙基己基)磷酸(D2EHPA)为载体配体的多滴液膜(MDLM)体系对Y3+离子的萃取行为。重点是该系统在水相之间选择性输送离子的能力。0.05%偶氮胂III络合后,用紫外-可见分光光度法对所提取的配合物进行分析。本研究的目的是确定最佳D2EHPA载体浓度,以及供体相和受体相的pH和温度条件对体系提取性能的影响。因此,我们在不同的D2EHPA浓度、pH值和温度下进行了一系列的提取实验,以评估它们对转运动力学的综合影响。在D2EHPA浓度为0.0045 mol/L,提取时间为160 min的条件下,MDLM体系对Y3+离子的传输效率最高达99.90%。载体浓度为0.0075 mol/L时,输运时间最短,为120 min,证实了载体浓度对提取动力学的强烈影响。计算得到的低活化能为31.446 kJ/mol,表明Y3+离子通过MDLM体系进入含有D2EHPA的有机相是扩散控制的。
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引用次数: 0
Bioorganometallic tagging of N-acetylhistamine with an Fe(CO)3 unit: synthesis, X-ray structure, and protonation behavior. 用Fe(CO)3单元标记n -乙酰组胺的生物有机金属:合成、x射线结构和质子化行为。
IF 1.4 4区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-10-28 eCollection Date: 2025-01-01 DOI: 10.55730/1300-0527.3773
Salah Merniz, Louiza Himed, Rofia Djerri, Belkis Akachat

This study highlights the potential of organometallic carbonyl complexes as selective markers for biomolecules, enabling sensitive infrared (IR) detection. The regio- and stereoselective coupling of N-acetylhistamine, a histidine analogue, with the precursor complex 1 [Fe(CO)3(1,4-η5-N-pyridiniocyclohexa-1,3-diene)] BF4 affords the labeled complex 3 [Fe(CO)3(1,4-η5-N-acetylhistaminocyclohexa-1,3-diene)]. X-ray diffraction (XRD) confirms the exo stereochemistry and reveals a rigid, well-defined architecture. IR and 1H nuclear magnetic resonance spectroscopic studies combined with IR-monitored acid-base titration demonstrate the complex's stability in aqueous media between pH 5 and 8, alongside a modest increase in basicity relative to the free ligand. These findings establish the Fe(CO)3 moiety as a robust platform for selective labeling of peptides and proteins, paving the way for targeted applications in bioorganometallic chemistry and spectroscopic imaging.

这项研究强调了有机金属羰基配合物作为生物分子的选择性标记物的潜力,使敏感的红外(IR)检测成为可能。组氨酸类似物n -乙酰组胺与前体配合物1 [Fe(CO)3(1,4-η5- n -吡啶环己基-1,3-二烯)]BF4的区域选择性和立体选择性偶联得到标记配合物3 [Fe(CO)3(1,4-η5- n -乙酰组胺环己基-1,3-二烯)]。x射线衍射(XRD)证实了外立体化学,并揭示了一个刚性的,明确的结构。红外和1H核磁共振波谱研究结合红外监测酸碱滴定表明,配合物在pH 5至8之间的水介质中的稳定性,以及相对于自由配体的碱度适度增加。这些发现确立了Fe(CO)3片段作为多肽和蛋白质选择性标记的强大平台,为生物有机金属化学和光谱成像的靶向应用铺平了道路。
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引用次数: 0
α-Glycosidase activity of novel coumarin-triazole-coumarin dyads. 新型香豆素-三唑-香豆素复合物的α-糖苷酶活性。
IF 1.4 4区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-10-27 eCollection Date: 2025-01-01 DOI: 10.55730/1300-0527.3770
Ersin Şirin, Esra Sevimli, Gökçe Seyhan, Burak Barut, Yunus Kaya, Baybars Köksoy

Novel coumarin-triazole-coumarin dyads were synthesized and characterized, and their α-glycosidase inhibitory activities were evaluated spectrophotometrically. Compound 4e exhibited the most pronounced inhibitory effect, with an IC50 value of 38.98 ± 0.77 μM. The IC50 values for 4d and 4a were 93.55 ± 1.70 μM and 95.04 ± 3.55 μM, respectively. The Lineweaver-Burk plot showed that 4e inhibited α-glycosidase in a mixed type. In addition, the K i value obtained from the Dixon plot was 19.95 ± 0.15 μM for α-glycosidase.

合成了新的香豆素-三唑-香豆素复合物并对其进行了表征,并对其α-糖苷酶抑制活性进行了分光光度测定。化合物4e的抑制作用最明显,IC50值为38.98±0.77 μM。4d和4a的IC50值分别为93.55±1.70 μM和95.04±3.55 μM。Lineweaver-Burk图显示,4e对混合型α-糖苷酶有抑制作用。此外,通过Dixon图得到α-糖苷酶的K i值为19.95±0.15 μM。
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引用次数: 0
Enhancing analytical performance of tyrosinase-based sensors with nanoparticles for detection of isoproterenol. 纳米颗粒酪氨酸酶传感器检测异丙肾上腺素的分析性能。
IF 1.4 4区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-09-04 eCollection Date: 2025-01-01 DOI: 10.55730/1300-0527.3765
Aysel Oktay, Sevinç Kurbanoğlu, Gülsüm Gündoğdu, Cem Bülent Üstündağ, Frieder W Scheller, Aysu Yarman

In this work, electrochemical biosensors utilizing tyrosinase (Tyr) for the detection of the nonselective beta-adrenergic agonist isoproterenol (ISO) are presented. Three different configurations for immobilizing Tyr on a graphite electrode (GE) are compared: (1) GE modified with poly(diallyldimethylammonium chloride) (PDADMAC), PDADMAC/Tyr/GE; (2) PDADMAC combined with iridium nanoparticles (IrNPs) in a stepwise preparation, resulting in PDADMAC/IrNPs/Tyr/GE; and (3) a composite of PDADMAC and IrNPs mixed with Tyr at a 1:1 (v:v), forming PDADMAC/(IrNPs-Tyr)/GE. Surface morphology was characterized using scanning electron microscopy (SEM). Cyclic voltammetry (CV) and amperometry were applied to characterize the biosensor's performance. Within the linear range of 5 μM to 211 μM, the biosensor PDADMAC/Tyr/GE exhibited a limit of detection (LOD) of 1.4 μM and a limit of quantification (LOQ) of 4.1 μM. PDADMAC/IrNPs/Tyr/GE displayed improved sensitivity with an LOD of 0.9 μM and an LOQ of 2.8 μM. The configuration PDADMAC/(IrNPs-Tyr)/GE demonstrated the best performance with an LOD of 0.3 μM and an LOQ of 0.8 μM. The slopes (0.0147 μA/M, 0.0096 μA/M, and 0.0031 μA/M for PDADMAC/(IrNPs-Tyr)/GE, PDADMAC/IrNPs/Tyr/GE, and PDADMAC/Tyr/GE, respectively) of the concentration dependencies for the three sensor modifications (which represent the analytical sensitivity) demonstrate the achieved enhancement of analytical performance by IrNPs. Furthermore, the biosensor's ability to detect ISO in the presence of potential interferences, such as ascorbic acid, uric acid, and paracetamol, was assessed. Additionally, we demonstrated the biosensor's potential to detect ISO in diluted spiked human serum samples.

在这项工作中,电化学生物传感器利用酪氨酸酶(Tyr)检测非选择性β -肾上腺素能激动剂异丙肾上腺素(ISO)。比较了在石墨电极(GE)上固定Tyr的三种不同构型:(1)用聚二烯基二甲基氯化铵(PDADMAC)修饰的石墨电极(GE), PDADMAC/Tyr/GE;(2) PDADMAC与铱纳米粒子(IrNPs)结合,分步制备PDADMAC/IrNPs/Tyr/GE;(3) PDADMAC和IrNPs与Tyr按1:1 (v:v)混合,形成PDADMAC/(IrNPs-Tyr)/GE。利用扫描电镜(SEM)对其表面形貌进行了表征。利用循环伏安法和安培法对生物传感器的性能进行了表征。在5 μM ~ 211 μM的线性范围内,PDADMAC/Tyr/GE生物传感器的检出限为1.4 μM,定量限为4.1 μM。PDADMAC/IrNPs/Tyr/GE的LOD为0.9 μM, LOQ为2.8 μM。PDADMAC/(IrNPs-Tyr)/GE的LOD为0.3 μM, LOQ为0.8 μM,性能最佳。三种传感器的浓度依赖性斜率(分别为0.0147 μA/M、0.0096 μA/M、0.0031 μA/M,分别为PDADMAC/(IrNPs-Tyr)/GE、PDADMAC/IrNPs/Tyr/GE和PDADMAC/Tyr/GE)(代表分析灵敏度)表明IrNPs提高了分析性能。此外,还评估了生物传感器在存在潜在干扰(如抗坏血酸、尿酸和扑热息痛)的情况下检测ISO的能力。此外,我们证明了生物传感器在稀释的加标人血清样品中检测ISO的潜力。
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引用次数: 0
Structural categorization and identification of electrostatic interactions in two proposed human serum albumin dimerization patterns and dipyridamole interaction. 两种提出的人血清白蛋白二聚化模式和双嘧达莫相互作用的静电相互作用的结构分类和鉴定。
IF 1.4 4区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-08-26 eCollection Date: 2025-01-01 DOI: 10.55730/1300-0527.3769
Haluk Çetinok, Veyis Karakoç, Erol Erçağ, Yusuf Melih Şekerer, Hasan Demirci

Human serum albumin (HSA) is a ubiquitous, multifunctional protein responsible for the systemic distribution of both endogenous metabolites and exogenous pharmaceuticals. Its inherent properties, particularly its ability to seep into tissues and its multiple ligand-binding sites, have rendered HSA an attractive vehicle for nanoparticle-based drug delivery systems, particularly for cancer targeting. In this study, we present high-resolution crystallographic data revealing two distinct dimerization patterns of HSA (Protein Data Bank [PDB] ID: 9V61) obtained under high-concentration crystallization conditions, along with results from dipyridamole docking. Both dimer types demonstrate extensive interface areas and a significant number of electrostatic interactions. Comparative analysis with a previously reported dimer structure (PDB ID: 3JQZ) and other high-interface-area structures (PDB ID: 5Z0B, PDB ID: 8CKS) indicates similarities in contact regions but unique residue-level differences in bonding interactions. Interface surface area distribution and space group histograms further support the rarity and potential physiological relevance of the identified dimer forms. Importantly, these dimer configurations do not disrupt Sudlow's drug-binding sites, as the dipyridamole docking analysis shows strong affinity for sites I and III without affecting their utility in engineered drug delivery. Our findings open new avenues for structure-based mutagenesis and nanoparticle design strategies centered on HSA dimerization dynamics.

人血清白蛋白(HSA)是一种普遍存在的多功能蛋白,负责内源性代谢物和外源性药物的全身分布。它固有的特性,特别是它渗入组织的能力和它的多个配体结合位点,使HSA成为基于纳米颗粒的药物输送系统的一个有吸引力的载体,特别是用于癌症靶向。在这项研究中,我们提供了高分辨率的晶体学数据,揭示了在高浓度结晶条件下获得的HSA (Protein data Bank [PDB] ID: 9V61)的两种不同的二聚化模式,以及双嘧达莫对接的结果。两种二聚体类型都表现出广泛的界面区域和大量的静电相互作用。与先前报道的二聚体结构(PDB ID: 3JQZ)和其他高界面面积结构(PDB ID: 5Z0B, PDB ID: 8CKS)的比较分析表明,接触区域相似,但在键合相互作用中存在独特的残馀水平差异。界面表面积分布和空间群直方图进一步支持了所识别的二聚体形式的稀罕性和潜在的生理相关性。重要的是,这些二聚体结构不会破坏Sudlow的药物结合位点,因为双嘧达莫对接分析显示对位点I和III有很强的亲和力,而不会影响它们在工程药物传递中的效用。我们的发现为基于结构的诱变和以HSA二聚化动力学为中心的纳米颗粒设计策略开辟了新的途径。
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引用次数: 0
Design and synthesis of folate receptor-targeted squaraine dye complex for photodynamic therapy. 光动力治疗用叶酸受体靶向方碱染料复合物的设计与合成。
IF 1.4 4区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-08-23 eCollection Date: 2025-01-01 DOI: 10.55730/1300-0527.3755
Ömer Sonkaya

In recent years, new treatment methods have been developed in addition to traditional treatments to eliminate cancer, one of the deadliest diseases. Given the shortcomings of conventional therapies, including the emergence of drug resistance and selectivity to the target cell, a considerable number of researchers have directed their attention toward the investigation of alternative, less invasive strategies for the treatment of cancer. Photodynamic therapy (PDT) has received great attention in the scientific community as it is seen as a promising method of cancer treatment. Various approaches have been adopted to identify new and more effective photosensitizers (PSs) that reduce adverse effects. In this context, it is suggested that squaraine dyes could potentially overcome the disadvantages associated with conventional PSs. Moreover, conjugating targeting agents such as folic acid (FA) to these PSs is suggested as a promising approach that can provide rational solutions for their applications in PDT. In this study, the SQ-FA compound, obtained by conjugation of squaraine dye and folic acid (SQ-FA), was synthesized, its structure was characterized by various methods, and cytotoxicity studies were presented. SQ-FA is designed as a diagnostic and therapeutic tool for use in cancer treatment for human lung carcinoma epithelial cells (A549). In addition, biocompatibility studies of dermal fibroblast cell lines (L929) were carried out. SQ-FA can function as a PS and be used as a targeting agent. Spectroscopic analysis and optical properties of SQ-FA, a new dye belonging to the squaraine family, were investigated.

近年来,除了传统的治疗方法之外,还开发了新的治疗方法来消除癌症,这是最致命的疾病之一。鉴于传统疗法的缺点,包括耐药性的出现和对靶细胞的选择性,相当多的研究人员已经将注意力转向研究替代的、侵入性较小的癌症治疗策略。光动力疗法(PDT)被认为是一种很有前途的癌症治疗方法,受到了科学界的高度关注。各种方法已被采用,以确定新的和更有效的光敏剂(ps),以减少不良反应。在这种情况下,有人认为角鲨碱染料有可能克服与传统ps相关的缺点。此外,叶酸(FA)等靶向药物偶联这些PSs是一种很有前途的方法,可以为它们在PDT中的应用提供合理的解决方案。本研究合成了方英碱染料与叶酸(SQ-FA)偶联得到的SQ-FA化合物,用各种方法对其结构进行了表征,并进行了细胞毒性研究。SQ-FA被设计为一种诊断和治疗工具,用于治疗人类肺癌上皮细胞(A549)。此外,还进行了真皮成纤维细胞系(L929)的生物相容性研究。SQ-FA可以起到PS的作用,并被用作靶向剂。对squaraine家族新染料SQ-FA的光谱分析和光学性质进行了研究。
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引用次数: 0
Synthesis, characterization, and theoretical study of new cocrystals and charge-transfer compounds. 新型共晶和电荷转移化合物的合成、表征和理论研究。
IF 1.4 4区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-08-19 eCollection Date: 2025-01-01 DOI: 10.55730/1300-0527.3766
Zarife Sibel Şahin, Zeki Kartal

This study used single-crystal X-ray diffraction, elemental analysis, infrared (IR) spectroscopy, theoretical nuclear magnetic resonance (NMR), and theoretical ultraviolet spectroscopy to characterize 3 newly synthesized crystalline compounds. Additionally, the nonlinear optical, highest occupied molecular orbital energies, lowest occupied molecular orbital energies, band gap, molecular electrostatic potential, and thermodynamic parameters of the 3 crystalline compounds were examined. The strong correlation between experimental IR spectra and theoretical NMR chemical shifts confirmed the accuracy of computational predictions. The molecular formulas of the 3 newly synthesized crystalline compounds, each containing different ligand molecules, were: C8H14O4·2(C6H4N2), C5H7N2·NCS, and Ni(CN)4·2(C5H7N2)·2(H2O) for compounds 1, 2, and 3, respectively. Crystallographic analysis showed that the compounds crystallize in the space groups P1̄, P21/n and C2/m, respectively. Their molecular packing is stabilized by a network of hydrogen bonds (C-H···O, O-H···N, N-H···N, N-H···S, O-H···N, and N-H···O) and noncovalent interactions (C-H···μ and μ···μ). Computational studies using Gaussian 03 and CrystalExplorer further elucidated their structural, magnetic, electrooptic, and electrochemical properties.

本研究利用单晶x射线衍射、元素分析、红外(IR)光谱、理论核磁共振(NMR)和理论紫外光谱对3个新合成的晶体化合物进行了表征。此外,还考察了3种晶体化合物的非线性光学、最高占位分子轨道能、最低占位分子轨道能、带隙、分子静电势和热力学参数。实验红外光谱和理论核磁共振化学位移之间的强相关性证实了计算预测的准确性。化合物1、2、3的分子式分别为:C8H14O4·2(C6H4N2)、C5H7N2·NCS和Ni(CN)4·2(C5H7N2)·2(H2O)。晶体学分析表明,化合物分别在P1´、P21/n和C2/m空间群中结晶。它们的分子排列由氢键网络(C-H··O、O- h··N、N- h··N、N- h··S、O- h··N和N- h··O)和非共价相互作用(C-H··μ和μ··μ)稳定。利用Gaussian 03和CrystalExplorer进行的计算研究进一步阐明了它们的结构、磁性、电光和电化学性质。
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引用次数: 0
Synthesis of biogenic silver nanoparticles from apricot kernel extracts for the colorimetric determination of gold. 用杏核提取物合成生物源银纳米颗粒比色法测定金。
IF 1.4 4区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-08-18 eCollection Date: 2025-01-01 DOI: 10.55730/1300-0527.3768
Ayça Girgin, Hilal Akbiyik, Buse Tuğba Zaman, Omid Nejati, Ayça Bal Öztürk, Gülten Çetin, Sezgin Bakirdere

Gold is abundant in nature, however, precise and reliable analytical methods for its detection are required stemming from its increasing prevalence in environmental, biological, and industrial systems, as well as the growing interest in understanding its function in living organisms and its effects on human health. This study investigates the use of biogenically synthesized silver nanoparticles (AgNPs) for the preconcentration and determination of gold ions prior to determination by UV-Vis spectrophotometry. AgNPs were synthesized by reducing silver nitrate through the use of an apricot kernel extract as both reducer and stabilizer agent. The colloidal yellowish AgNPs interacted with gold ions, leading to a distinct color change and a considerable decrease in the surface plasmon resonance (SPR) intensity at 415 nm in the UV-Vis absorption band, indicating a highly sensitive and selective colorimetric detection of gold ions. Under optimized conditions, the proposed method achieved satisfactory limit of detection (LOD) and limit of quantification (LOQ) values of 2.9 and 9.7 mg/L, respectively. A matrix matching calibration strategy was used to enhance quantification accuracy, resulting in satisfactory percent recoveries from waste mud samples (88-112%). Overall, the results validated the developed method as a green, simple, rapid, and accurate analytical approach to the determination of gold.

金在自然界中是丰富的,然而,由于其在环境,生物和工业系统中的日益普遍,以及对了解其在生物体中的功能及其对人类健康的影响日益增长的兴趣,需要精确和可靠的分析方法来检测它。本研究探讨了利用生物合成银纳米粒子(AgNPs)在紫外可见分光光度法测定金离子之前进行预富集和测定。以杏核提取物为还原剂和稳定剂,通过还原硝酸银合成AgNPs。胶体黄色AgNPs与金离子相互作用,导致明显的颜色变化和表面等离子体共振(SPR)强度在紫外-可见吸收带415 nm处显著降低,表明对金离子具有高灵敏度和选择性的比色检测。在优化条件下,该方法的检出限(LOD)和定量限(LOQ)分别为2.9和9.7 mg/L。采用矩阵匹配校准策略提高了定量精度,使废泥样品的回收率达到令人满意的百分比(88-112%)。总体而言,结果验证了该方法是一种绿色、简单、快速、准确的测定金的分析方法。
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引用次数: 0
New bis-piperazine derivatives: synthesis, characterization (IR, NMR), gamma-ray absorption, antimicrobial activity, molecular docking and dynamics study. 新的双哌嗪衍生物:合成、表征(红外、核磁共振)、伽马射线吸收、抗菌活性、分子对接和动力学研究。
IF 1.4 4区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-08-16 eCollection Date: 2025-01-01 DOI: 10.55730/1300-0527.3767
Yasemin Ünver, Arzu Coşkun, Fatih Çelik, Halil İbrahim Güler, Kadriye Inan Bektaş

A series of novel bis-piperazine derivatives (2a-2f) were synthesized and structurally characterized via Fourier transform-infrared and nuclear magnetic resonance spectroscopic techniques. Their gamma-ray shielding efficiencies were investigated through simulations on the Monte Carlo-based Geant4-GATE platform, and the results were benchmarked against data obtained from the XCOM and Phy-X software. A simulation model incorporating an NaI scintillation detector and a point gamma source was developed. Key shielding parameters, including mass attenuation coefficient, linear attenuation coefficient, half-value layer, and mean free path (MFP), were evaluated at gamma energies of 80, 120, 662, 1173, and 1332 keV. Additionally, the energy absorption buildup factor was calculated using EpiXS software, and penetration depths were assessed in the 0.015-15 MeV energy range for 10, 20, and 40 MFP values. Among the synthesized compounds, compound 2f (C35H54N6O2) had the highest gamma attenuation performance. The antimicrobial potential of compounds 2a-2f was evaluated in vitro against various microbial strains, including Gram-positive and Gram-negative bacteria as well as a fungal species. Furthermore, in silico molecular docking studies targeting DNA gyrase and GlcN-6-P synthase were performed for compounds 2d and 2f. Docking results indicated significant interactions, supporting their potential as antimicrobial agents. To assess the dynamic stability and binding persistence of the top-scoring complex (2VF5-2d), a 100 ns molecular dynamics simulation was conducted. The complex remained structurally stable throughout the trajectory, and binding free energy calculated via MM/PBSA (ΔGbind = -27.31 kcal/mol) further supported the strong and favorable interaction. These results highlight compound 2d as a promising candidate for further antibacterial development.

合成了一系列新型双哌嗪衍生物(2a-2f),并通过傅里叶变换-红外和核磁共振波谱技术对其进行了结构表征。通过在蒙特卡罗的Geant4-GATE平台上进行模拟,研究了它们的伽马射线屏蔽效率,并将结果与XCOM和Phy-X软件获得的数据进行了基准测试。建立了包含NaI闪烁探测器和点伽玛源的仿真模型。在80、120、662、1173和1332 keV的伽马能量下,评估了关键屏蔽参数,包括质量衰减系数、线性衰减系数、半值层和平均自由程(MFP)。此外,利用EpiXS软件计算了能量吸收累积因子,并在0.015-15 MeV能量范围内评估了10、20和40 MFP值下的穿透深度。在所合成的化合物中,化合物2f (C35H54N6O2)的γ衰减性能最高。化合物2a-2f在体外对多种微生物菌株(包括革兰氏阳性菌和革兰氏阴性菌以及一种真菌)的抑菌潜力进行了评估。此外,对化合物2d和2f进行了针对DNA旋切酶和GlcN-6-P合成酶的硅分子对接研究。对接结果显示了显著的相互作用,支持它们作为抗菌药物的潜力。为了评估得分最高的配合物(2VF5-2d)的动态稳定性和结合持久性,进行了100 ns的分子动力学模拟。通过MM/PBSA计算的结合自由能(ΔGbind = -27.31 kcal/mol)进一步支持了强而有利的相互作用。这些结果突出了化合物2d作为进一步抗菌开发的有希望的候选者。
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Turkish Journal of Chemistry
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