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Identification of monocyte-associated genes MSRB2, CLEC4D, and ASGR2 as potential biomarkers for tuberculosis via machine learning and mendelian randomization 通过机器学习和孟德尔随机化鉴定单核细胞相关基因MSRB2、cle4d和ASGR2作为结核病的潜在生物标志物
IF 2.8 3区 医学 Q3 IMMUNOLOGY Pub Date : 2025-07-03 DOI: 10.1016/j.tube.2025.102671
Zihan Cai , Yuyang Zhou , Chun Bi , Shoupeng Ding

Objective

This study explores the link between immune cells and tuberculosis (TB) pathogenesis and progression, proposing diagnostic strategies based on immune microenvironment changes.

Methods

The CIBERSORT algorithm assessed immune cell infiltration in TB tissues, validated by routine blood tests. Differential expression analysis and WGCNA identified key genes and modules. GO and KEGG analyses elucidated biological functions. Machine learning pinpointed diagnostic biomarkers and built a predictive model. Further validation included GSVA, single-cell data, Mendelian randomization, and RT-qPCR.

Results

Analysis of the immune microenvironment in TB patients and healthy controls revealed monocytes as the predominant immune cell type. A total of 90 overlapping genes were identified through differential expression analysis and WGCNA. A diagnostic model incorporating MSRB2, CLEC4D, and ASGR2 was constructed using three distinct machine learning algorithms and logistic regression. Single-cell data analysis demonstrated that these three genes were predominantly expressed in mononuclear cells of TB patients. MR analysis further established a causal relationship between CLEC4D and an elevated risk of TB.

Conclusion

We established a monocyte-based diagnostic model demonstrating robust predictive accuracy. MSRB2, CLEC4D, and ASGR2 represent promising therapeutic targets for TB immunotherapy, providing potential breakthroughs in diagnostic precision and treatment efficacy.
目的探讨免疫细胞与结核病发病进展的关系,提出基于免疫微环境变化的诊断策略。方法CIBERSORT算法评估TB组织免疫细胞浸润,并通过血常规检查验证。差异表达分析和WGCNA鉴定关键基因和模块。GO和KEGG分析阐明了其生物学功能。机器学习确定了诊断性生物标志物,并建立了预测模型。进一步的验证包括GSVA、单细胞数据、孟德尔随机化和RT-qPCR。结果结核患者和健康对照者的免疫微环境分析显示,单核细胞是主要的免疫细胞类型。通过差异表达分析和WGCNA共鉴定出90个重叠基因。采用三种不同的机器学习算法和逻辑回归构建了包含MSRB2、cle4d和ASGR2的诊断模型。单细胞数据分析表明,这三个基因主要在结核病患者的单核细胞中表达。MR分析进一步确立了cle4d与结核病风险升高之间的因果关系。结论我们建立了一种基于单核细胞的诊断模型,具有较强的预测准确性。MSRB2、CLEC4D和ASGR2是结核病免疫治疗有前景的治疗靶点,在诊断精度和治疗疗效方面有潜在突破。
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引用次数: 0
MicroRNAs in exhaled breath Condensate: Novel non-invasive biomarkers for tuberculosis diagnosis 呼气冷凝物中的microrna:结核病诊断的新型非侵入性生物标志物
IF 2.8 3区 医学 Q3 IMMUNOLOGY Pub Date : 2025-07-02 DOI: 10.1016/j.tube.2025.102670
Tak Jaya , Pattnaik Bijay , Rai Divyanjali , Bhatraju Naveen , P.P. Adwika , Bangaru Sunil , Sunita Yadav , Sachin kumar , Seetu Kumari , Umashankar Verma , Geetika Yadav , R.S. Dhaliwal , Saurabh Mittal , Pawan Tiwari , Vijay Hadda , Karan Madan , Anurag Agrawal , Randeep Guleria , Tapasya Srivastava , Anant Mohan

Background

Tuberculosis remains a significant global health issue. Sputum smear microscopy has low sensitivity, making it difficult to diagnose. Analysis of miRNA from EBC (exhaled breath condensate) offers a potential non-invasive diagnostic method that could improve sensitivity and specificity for TB detection, including extrapulmonary TB (EPTB).

Method

EBC was collected from 65 treatment naïve TB patients and 65 healthy controls. miRNA profiling was done on an exploratory set (n = 40) using the qRT-PCR-based miRNome profiler kit, and shortlisted miRNAs were validated in a separate set (n = 25) using qRT-PCR. ROC curves were used to evaluate diagnostic performance.

Result

In this study, we identified eight differentially expressed miRNAs in TB vs healthy subjects (seven upregulated, one downregulated). Comparing PTB with EPTB, five miRNAs were upregulated and 68 miRNAs were downregulated in PTB. Between PTB and healthy controls, six miRNAs were upregulated and 16 miRNAs were downregulated in PTB, while in EPTB, 132 miRNAs were upregulated compared with controls. Validation confirmed upregulation of miR-454, miR-139, and miR-143 in tuberculosis.

Conclusion

The findings of our study indicate that the expression of miR-143, miR-454, and miR-139 in exhaled breath condensate has strong potential as a non-invasive biomarker for TB diagnosis.
结核病仍然是一个重大的全球卫生问题。痰涂片镜检灵敏度低,难以诊断。对EBC(呼出液)miRNA的分析提供了一种潜在的非侵入性诊断方法,可以提高结核病检测的敏感性和特异性,包括肺外结核(EPTB)。方法收集65例naïve结核治疗患者和65例健康对照者的debc。使用基于qRT-PCR的miRNA分析试剂盒在一组探索性集合(n = 40)上进行miRNA分析,并使用qRT-PCR在另一组(n = 25)中验证入围的miRNA。ROC曲线用于评价诊断效果。结果在本研究中,我们鉴定出结核患者与健康受试者中8个差异表达的mirna(7个上调,1个下调)。与EPTB相比,PTB中有5个mirna上调,68个mirna下调。在PTB和健康对照组之间,PTB中有6个mirna上调,16个mirna下调,而EPTB中有132个mirna上调。验证证实miR-454、miR-139和miR-143在结核中上调。我们的研究结果表明,miR-143、miR-454和miR-139在呼出液中的表达具有很强的潜力,可以作为结核病诊断的非侵入性生物标志物。
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引用次数: 0
Efficient cell model for assessing inflammatory responsive genes in Mycobacterium tuberculosis and SARS-CoV-2 co-infection 评估结核分枝杆菌和SARS-CoV-2合并感染中炎症反应基因的高效细胞模型
IF 2.8 3区 医学 Q3 IMMUNOLOGY Pub Date : 2025-07-01 DOI: 10.1016/j.tube.2025.102672
Thays Maria Costa de Lucena , Débora Elienai de Oliveira Miranda , Juliana Vieira de Barros Arcoverde , Mariana Souza Bezerra Cavalcanti , Willyenne Marilia Dantas , Lindomar José Pena , Virginia Maria Barros de Lorena , Michelle Christiane da Silva Rabello , Jaqueline de Azevedo Silva
Mycobacterium tuberculosis (Mtb) and severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) may induce immunopathology with extensive lung damage in hosts. To elucidate the dynamics of co-infection Mtb and SARS-CoV-2 and its impact on inflammatory mediators’ expression, we conducted a study to evaluate A549, lung epithelial cells, as a potential model for hosting both pathogens simultaneously. Cell infection initiated with Mtb H37Rv and following a 24-h incubation period, the cells were then infected with SARS-CoV-2. After a 72 h incubation period, a precision test was conducted for both pathogens, and total RNA was extracted for subsequent analysis of gene expression by RT-qPCR of the target genes: IFN-γ, TNF-α, IL-6, and IL-1β. Additionally, the levels of IL-1β, IL-2, IL-4, IL-6, IL-10, IFN-γ, and TNF-α in the culture supernatants were measured. A549 cells are a stable and reliable cellular model for co-infection between Mycobacterium tuberculosis and SARS-CoV-2. Co-infection with both pathogens led to downregulation of IFN-γ, TNF-α, and IL-10, and upregulation of IL-6 and IL-1β compared to uninfected cells. A549 cells function as a cellular model for co-infection and seems a good model for elucidating host inflammatory responses in the initial site of infection.
结核分枝杆菌(Mtb)和严重急性呼吸综合征冠状病毒-2 (SARS-CoV-2)可引起宿主广泛肺损伤的免疫病理。为了阐明Mtb和SARS-CoV-2共同感染的动力学及其对炎症介质表达的影响,我们进行了一项研究,以评估A549肺上皮细胞作为同时感染两种病原体的潜在模型。细胞感染由Mtb H37Rv开始,经过24小时的潜伏期后,细胞被SARS-CoV-2感染。孵育72 h后,对两种病原菌进行精确检测,提取总RNA,随后通过RT-qPCR分析靶基因IFN-γ、TNF-α、IL-6和IL-1β的基因表达情况。同时测定培养上清液中IL-1β、IL-2、IL-4、IL-6、IL-10、IFN-γ、TNF-α的水平。A549细胞是结核分枝杆菌与SARS-CoV-2共感染的稳定可靠的细胞模型。与未感染的细胞相比,两种病原体的联合感染导致IFN-γ、TNF-α和IL-10的下调,IL-6和IL-1β的上调。A549细胞作为共感染的细胞模型,似乎是阐明感染初始部位宿主炎症反应的良好模型。
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引用次数: 0
Exploring novel salivary host biomarkers for immunological diagnosis of tuberculosis: A preliminary biomarker discovery study 探索新的唾液宿主生物标志物用于结核病的免疫学诊断:初步的生物标志物发现研究
IF 2.8 3区 医学 Q3 IMMUNOLOGY Pub Date : 2025-07-01 DOI: 10.1016/j.tube.2025.102669
Pavithra Selvan , Nalini Jayanthi Nagesh , Leela Kakithakara Vajravelu
Tuberculosis is a serious public health concern on a global scale, which emphasises the critical need for quick and precise diagnostic and treatment response monitoring techniques. In this study, Luminex multiplex immunoassay was used to detect the concentrations of 37 host biomarkers in saliva samples from 46 patients newly diagnosed with active pulmonary tuberculosis (PTB) and 46 patients with other respiratory diseases (ORD). Multiple logistic regression and the area under the receiver operator characteristics curve (AUC) were used to evaluate the diagnostic accuracy of biomarkers, which showed significant differences between the 2 groups. This study reported that Fractalkine exhibited the highest diagnostic accuracy and excellent discriminatory power, with statistically significant results (p ≤ 0.05), an AUC of 0.91, 89.1 % sensitivity and 76.1 % specificity, highlighting its strong potential to distinguish PTB cases from ORD cases. Additionally, our study found that the median levels of IL-17A, IL-23, and VEGF were statistically significant (p ≤ 0.05). General discriminant analysis further identified Fractalkine, VEGF, GM-CSF, IL-23, and IL-1α as the top five most effective biomarkers for combinations. The backward elimination approach demonstrated the potential usefulness of a four-marker combination (Fractalkine + GM-CSF + IL-23 + IL-1α) as a confirmatory diagnostic tool by achieving the greatest overall diagnostic accuracy with an AUC of 0.94 and 91.3 % specificity. Thus, combining multiple markers with high discriminating power may improve diagnostic performance and subsequently provide a more accurate, non-invasive saliva-based PTB diagnostic tool.
结核病在全球范围内是一个严重的公共卫生问题,这强调了对快速和精确的诊断和治疗反应监测技术的迫切需要。本研究采用Luminex多重免疫分析法检测46例新诊断为活动性肺结核(PTB)和46例其他呼吸系统疾病(ORD)患者唾液样本中37种宿主生物标志物的浓度。采用多元logistic回归和受试者操作者特征曲线下面积(AUC)评价生物标志物的诊断准确性,两组间差异有统计学意义。本研究报道Fractalkine具有最高的诊断准确性和极好的鉴别能力,结果具有统计学意义(p≤0.05),AUC为0.91,敏感性为89.1%,特异性为76.1%,突出了其在区分PTB和ORD病例方面的强大潜力。此外,我们的研究发现,IL-17A、IL-23、VEGF的中位水平具有统计学意义(p≤0.05)。一般判别分析进一步确定Fractalkine、VEGF、GM-CSF、IL-23和IL-1α是联合治疗前五大最有效的生物标志物。反向消除方法证明了四标记物组合(Fractalkine + GM-CSF + IL-23 + IL-1α)作为确认性诊断工具的潜在有效性,AUC为0.94,特异性为91.3%,总体诊断准确性最高。因此,结合具有高鉴别能力的多个标记物可能提高诊断性能,并随后提供更准确、无创的基于唾液的PTB诊断工具。
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引用次数: 0
Hereditary and antimicrobial factor shaping extracellular bacteria dynamics in an in-host mathematical model of tuberculosis for disease control 遗传和抗菌因素在结核病的宿主数学模型中塑造细胞外细菌动力学,用于疾病控制
IF 2.8 3区 医学 Q3 IMMUNOLOGY Pub Date : 2025-06-28 DOI: 10.1016/j.tube.2025.102668
Morufu Oyedunsi Olayiwola , Ezekiel Abiodun Oluwafemi
Tuberculosis (TB) remains a global health challenge, necessitating deeper insights into the dynamics of extracellular bacterial populations within infected hosts. This study presents an in-host mathematical model that incorporates hereditary and antimicrobial factors influencing TB progression. The biological feasibility of the model is established by analyzing the boundedness of solutions within a realistic parameter space. The equilibrium states, including the disease-free and endemic equilibria, are examined, revealing conditions under which the system remains locally asymptotically stable. Sensitivity analysis is conducted to determine the key parameters driving infection dynamics, providing insights into potential control strategies. Notably, the model exhibits a backward bifurcation, indicating the possibility of multiple stable states and suggesting that reducing the basic reproduction number R0 below unity may not be sufficient for disease eradication. These findings highlight the importance of targeted interventions to effectively control extracellular bacterial populations and mitigate TB infection.
结核病(TB)仍然是一个全球性的健康挑战,需要更深入地了解感染宿主内细胞外细菌种群的动态。本研究提出了一个纳入影响结核病进展的遗传和抗菌因素的宿主内数学模型。通过分析实际参数空间内解的有界性,建立了模型的生物可行性。研究了平衡状态,包括无病平衡和地方病平衡,揭示了系统保持局部渐近稳定的条件。进行敏感性分析以确定驱动感染动态的关键参数,为潜在的控制策略提供见解。值得注意的是,该模型出现了后向分岔,这表明可能存在多个稳定状态,并表明将基本繁殖数R0降低到1以下可能不足以根除疾病。这些发现强调了有针对性的干预措施对有效控制细胞外细菌种群和减轻结核病感染的重要性。
{"title":"Hereditary and antimicrobial factor shaping extracellular bacteria dynamics in an in-host mathematical model of tuberculosis for disease control","authors":"Morufu Oyedunsi Olayiwola ,&nbsp;Ezekiel Abiodun Oluwafemi","doi":"10.1016/j.tube.2025.102668","DOIUrl":"10.1016/j.tube.2025.102668","url":null,"abstract":"<div><div>Tuberculosis (TB) remains a global health challenge, necessitating deeper insights into the dynamics of extracellular bacterial populations within infected hosts. This study presents an in-host mathematical model that incorporates hereditary and antimicrobial factors influencing TB progression. The biological feasibility of the model is established by analyzing the boundedness of solutions within a realistic parameter space. The equilibrium states, including the disease-free and endemic equilibria, are examined, revealing conditions under which the system remains locally asymptotically stable. Sensitivity analysis is conducted to determine the key parameters driving infection dynamics, providing insights into potential control strategies. Notably, the model exhibits a backward bifurcation, indicating the possibility of multiple stable states and suggesting that reducing the basic reproduction number R<sub>0</sub> below unity may not be sufficient for disease eradication. These findings highlight the importance of targeted interventions to effectively control extracellular bacterial populations and mitigate TB infection.</div></div>","PeriodicalId":23383,"journal":{"name":"Tuberculosis","volume":"154 ","pages":"Article 102668"},"PeriodicalIF":2.8,"publicationDate":"2025-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144556722","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
CRISPRi-mediated repression of efflux pumps reveals Rv1258c as a key contributor to pyrazinamide resistance in Mycobacterium tuberculosis crispr介导的外排泵抑制揭示了Rv1258c是结核分枝杆菌吡嗪酰胺耐药的关键因素
IF 2.8 3区 医学 Q3 IMMUNOLOGY Pub Date : 2025-06-19 DOI: 10.1016/j.tube.2025.102665
Carlos Alonso Flores B. , Kiara Aricoche-Del Campo , Robert H. Gilman , Mirko Zimic , Patricia Sheen
{"title":"CRISPRi-mediated repression of efflux pumps reveals Rv1258c as a key contributor to pyrazinamide resistance in Mycobacterium tuberculosis","authors":"Carlos Alonso Flores B. ,&nbsp;Kiara Aricoche-Del Campo ,&nbsp;Robert H. Gilman ,&nbsp;Mirko Zimic ,&nbsp;Patricia Sheen","doi":"10.1016/j.tube.2025.102665","DOIUrl":"10.1016/j.tube.2025.102665","url":null,"abstract":"","PeriodicalId":23383,"journal":{"name":"Tuberculosis","volume":"154 ","pages":"Article 102665"},"PeriodicalIF":2.8,"publicationDate":"2025-06-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144471757","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
METTL3 contributes to M.tb-induced injury and inflammation in THP-1 macrophages by mediating m6A methylation of IRF8 to activate TLR4/NF-kB pathway METTL3通过介导IRF8的m6A甲基化激活TLR4/NF-kB通路,参与m.tb诱导的THP-1巨噬细胞损伤和炎症
IF 2.8 3区 医学 Q3 IMMUNOLOGY Pub Date : 2025-06-13 DOI: 10.1016/j.tube.2025.102667
Yunhua Chen , Xiaolin Tang , Chao He , Chong Xiao , Ziping Zhao

Background

Macrophages play central roles in the immunity response to infection of intracellular bacteria, including Mycobacterium tuberculosis (M.tb) in tuberculosis (TB). Methyltransferase-like 3 (METTL3) has been implicated in the macrophage regulation in TB, and this study intended to investigate the molecular mechanism of METTL3 with interferon regulatory factor-8 (IRF8) in TB using in vitro model established by M.tb-infected THP-1 macrophages.

Methods

RT-qPCR and Western blot were utilized to analyze mRNA and protein expression, respectively. Cell viability, proliferation, and apoptosis were examined through cell counting kit-8 assay, EdU assay, and flow cytometry/TUNEL assay. Inflammatory cytokines were detected via enzyme-linked immunosorbent assay. Methylated RNA Immunoprecipitation (MeRIP), RIP and Co-IP were performed to assess the interaction between genes.

Results

IRF8 knockdown alleviated injury and inflammation in M.tb-infected THP-1 macrophages. METTL3 enhanced IRF8 mRNA stability by inducing m6A methylation. IGF2BP1 functioned as an m6A reader to affect m6A methylation of IRF8. The function of METTL3 in M.tb-induced THP-1 macrophages was attributed to the positive regulation of IRF8. IRF8 bound to TLR4 and METTL3 could regulate TLR4 expression via targeting IRF8. IRF8/TLR4 axis promoted M.tb-induced THP-1 cell injury and inflammation. TLR4/NF-kB pathway was activated by METTL3-mediated IRF8.

Conclusion

These findings revealed that METTL3 expedited cell injury and inflammatory reaction in M.tb-infected THP-1 macrophages by inducing m6A methylation of IRF8 to activate TLR4/NF-kB pathway.
巨噬细胞在细胞内细菌感染的免疫应答中起着核心作用,包括结核分枝杆菌(M.tb)。甲基转移酶样3 (Methyltransferase-like 3, METTL3)参与了TB巨噬细胞的调控,本研究拟通过m.tb感染THP-1巨噬细胞建立体外模型,探讨METTL3与干扰素调节因子-8 (interferon regulatory factor-8, IRF8)在TB中的分子机制。方法采用srt - qpcr和Western blot分别分析mRNA和蛋白的表达。通过细胞计数试剂盒-8法、EdU法和流式细胞术/TUNEL法检测细胞活力、增殖和凋亡。采用酶联免疫吸附法检测炎症因子。甲基化RNA免疫沉淀(MeRIP), RIP和Co-IP评估基因之间的相互作用。结果sirf8敲低可减轻结核分枝杆菌感染THP-1巨噬细胞的损伤和炎症反应。METTL3通过诱导m6A甲基化增强IRF8 mRNA的稳定性。IGF2BP1作为m6A读取器影响IRF8的m6A甲基化。METTL3在m.tb诱导的THP-1巨噬细胞中的作用归因于IRF8的正调控。IRF8结合TLR4和METTL3可以通过靶向IRF8调控TLR4的表达。IRF8/TLR4轴促进m.tb诱导的THP-1细胞损伤和炎症。TLR4/NF-kB通路被mettl3介导的IRF8激活。结论METTL3通过诱导IRF8的m6A甲基化激活TLR4/NF-kB通路,加速了m.tb感染的THP-1巨噬细胞的细胞损伤和炎症反应。
{"title":"METTL3 contributes to M.tb-induced injury and inflammation in THP-1 macrophages by mediating m6A methylation of IRF8 to activate TLR4/NF-kB pathway","authors":"Yunhua Chen ,&nbsp;Xiaolin Tang ,&nbsp;Chao He ,&nbsp;Chong Xiao ,&nbsp;Ziping Zhao","doi":"10.1016/j.tube.2025.102667","DOIUrl":"10.1016/j.tube.2025.102667","url":null,"abstract":"<div><h3>Background</h3><div>Macrophages play central roles in the immunity response to infection of intracellular bacteria, including <em>Mycobacterium tuberculosis</em> (M.tb) in tuberculosis (TB). Methyltransferase-like 3 (METTL3) has been implicated in the macrophage regulation in TB, and this study intended to investigate the molecular mechanism of METTL3 with interferon regulatory factor-8 (IRF8) in TB using <em>in vitro</em> model established by M.tb-infected THP-1 macrophages.</div></div><div><h3>Methods</h3><div>RT-qPCR and Western blot were utilized to analyze mRNA and protein expression, respectively. Cell viability, proliferation, and apoptosis were examined through cell counting kit-8 assay, EdU assay, and flow cytometry/TUNEL assay. Inflammatory cytokines were detected via enzyme-linked immunosorbent assay. Methylated RNA Immunoprecipitation (MeRIP), RIP and Co-IP were performed to assess the interaction between genes.</div></div><div><h3>Results</h3><div>IRF8 knockdown alleviated injury and inflammation in M.tb-infected THP-1 macrophages. METTL3 enhanced IRF8 mRNA stability by inducing m<sup>6</sup>A methylation. IGF2BP1 functioned as an m<sup>6</sup>A reader to affect m<sup>6</sup>A methylation of IRF8. The function of METTL3 in M.tb-induced THP-1 macrophages was attributed to the positive regulation of IRF8. IRF8 bound to TLR4 and METTL3 could regulate TLR4 expression via targeting IRF8. IRF8/TLR4 axis promoted M.tb-induced THP-1 cell injury and inflammation. TLR4/NF-kB pathway was activated by METTL3-mediated IRF8.</div></div><div><h3>Conclusion</h3><div>These findings revealed that METTL3 expedited cell injury and inflammatory reaction in M.tb-infected THP-1 macrophages by inducing m<sup>6</sup>A methylation of IRF8 to activate TLR4/NF-kB pathway.</div></div>","PeriodicalId":23383,"journal":{"name":"Tuberculosis","volume":"154 ","pages":"Article 102667"},"PeriodicalIF":2.8,"publicationDate":"2025-06-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144511093","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Correlation of Trace detection in Gene Xpert MTB/RIF ultra with MGIT TB culture in a high TB-endemic Country 结核高发国家基因Xpert MTB/RIF ultra微量检测与MGIT结核培养的相关性
IF 2.8 3区 医学 Q3 IMMUNOLOGY Pub Date : 2025-06-09 DOI: 10.1016/j.tube.2025.102666
Swapna Naik, Sweta Dhaneja, Archana Khilari, Shaoli Basu, Anjali Shetty, Camilla Rodrigues

Background

The Gene Xpert MTB/RIF Ultra is a Cartridge-Based Nucleic Acid Amplification Test (CBNAAT) for rapid detection of Mycobacterium tuberculosis (MTB) and rifampicin (RIF) drug susceptibility testing (DST) pattern.

Objective

1)To compare the culture results of samples detected as a Trace on Gene Xpert MTB/RIF Ultra with MTB growth in liquid culture. 2) To compare the rifampicin indeterminate results from Gene Xpert MTB/RIF Ultra with MGIT RIF DST pattern.

Materials and Methods

A retrospective case record study was conducted from January 1, 2020 to August 31, 2024. Samples were evaluated using Gene Xpert MTB/RIF Ultra and MGIT liquid culture. MTB isolates from MGIT liquid culture were subjected to MGIT RIF DST.

Result

A total of 1821 samples detected as trace in Gene Xpert MTB/RIF Ultra, 538 (29.54 %) grew in MGIT liquid culture, while 1283 (70.46 %) did not grow. Among the 538 Trace detected samples with RIF indeterminate results, a comparison with MGIT RIF DST revealed that 451 (83.83 %) were rifampicin sensitive, while 87 (16.17 %) were rifampicin resistance. 49 (9.10 %) of these were pulmonary samples, while 489 (90.90 %) were extrapulmonary samples.

Conclusion

Gene Xpert MTB/RIF Ultra is more rapid, more sensitive, less specific and more cost-effective compared to MGIT liquid culture.
背景Xpert MTB/RIF Ultra基因是一种快速检测结核分枝杆菌(MTB)和利福平(RIF)药敏试验(DST)模式的核酸扩增试验(CBNAAT)。目的1)比较Xpert MTB/RIF Ultra基因痕量检测样品的培养结果与液体培养MTB的生长情况。2)比较Gene Xpert MTB/RIF Ultra与MGIT RIF DST模式的利福平不确定结果。材料与方法于2020年1月1日至2024年8月31日进行回顾性病例记录研究。使用Gene Xpert MTB/RIF Ultra和MGIT液体培养对样品进行评估。对MGIT液体培养的MTB分离株进行MGIT RIF DST检测。结果基因Xpert MTB/RIF Ultra检测到痕量样品1821份,其中538份(29.54%)在MGIT液体培养中生长,1283份(70.46%)未生长。在538份RIF结果不确定的痕量检测样品中,与MGIT RIF DST比较,451份(83.83%)对利福平敏感,87份(16.17%)对利福平耐药。肺标本49例(9.10%),肺外标本489例(90.90%)。结论与MGIT液体培养相比,gene Xpert MTB/RIF Ultra快速、灵敏、特异性低、性价比高。
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引用次数: 0
In vitro and in vivo antibacterial activity of sudapyridine (WX-081) combined with other drugs against Mycobacterium abscessus 苏达吡啶(WX-081)联合其他药物对脓肿分枝杆菌的体外和体内抗菌活性研究
IF 2.8 3区 医学 Q3 IMMUNOLOGY Pub Date : 2025-06-03 DOI: 10.1016/j.tube.2025.102655
Hong Wang , Luyao Zheng , Lei Fu , Weiyan Zhang , Shaoyu Dong , Xiaoyou Chen , Yu Lu
The management of Mycobacterium abscessus (MAB) infection presents formidable challenges, necessitating the development of innovative antimicrobial agents and more efficacious combination therapies. The objective of this study was to investigate the in vitro, intracellular, and in vivo antibacterial activity of sudapyridine (WX-081) in combination with clarithromycin (CLR), clofazimine (CFZ), rifabutin (RFB), and linezolid (LZD) against MAB. In vitro, the interaction between WX-081 and other drugs was assessed using the checkerboard method against MAB. Synergistic or additive effects were observed when combining WX-081 with other drugs against all strains tested. The intracellular activity of WX-081 in combination with CLR, CFZ, RFB, and LZD against the MAB reference strain in J774A.1 cells was evaluated. The combination of WX-081 and CFZ or RFB exhibited potent inhibitory activity against MAB in macrophages. To evaluate pharmacodynamics, immunosuppressed BALB/c mice were infected with MAB to establish a murine model for assessing two-drug and three-drug combinations. In vivo studies demonstrated that the combination of WX-081 with CLR or both CLR and CFZ displayed antibacterial activity and significantly prevented mouse mortality. Our study demonstrates that the concurrent use of WX-081 with CLR or CLR plus CFZ holds significant promise as a clinical intervention for MAB infection.
脓肿分枝杆菌(MAB)感染的管理面临着巨大的挑战,需要开发创新的抗菌药物和更有效的联合治疗。本研究旨在探讨苏达吡啶(WX-081)与克拉霉素(CLR)、氯法齐明(CFZ)、利福布汀(RFB)和利奈唑胺(LZD)联用对MAB的体外、细胞内和体内抗菌活性。体外,采用棋盘法检测WX-081与其他药物对MAB的相互作用。WX-081与其他药物联用对所有菌株均有协同或加性作用。WX-081与CLR、CFZ、RFB和LZD联合对J774A单克隆抗体参考菌株的胞内活性。评估1个细胞。WX-081与CFZ或RFB联合使用对巨噬细胞的MAB有较强的抑制作用。为了评估药效学,我们用MAB感染免疫抑制的BALB/c小鼠,建立小鼠模型来评估两药和三药联合用药。体内研究表明,WX-081与CLR或CLR与CFZ联合使用均具有抗菌活性,可显著防止小鼠死亡。我们的研究表明,WX-081与CLR或CLR + CFZ同时使用,作为单克隆抗体感染的临床干预具有重要的前景。
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引用次数: 0
In vitro and in vivo activities of a novel benzothiopyranone candidate NTB-3119M against Mycobacterium tuberculosis 新型苯并噻吩吡喃酮候选物NTB-3119M抗结核分枝杆菌的体内外活性研究
IF 2.8 3区 医学 Q3 IMMUNOLOGY Pub Date : 2025-06-02 DOI: 10.1016/j.tube.2025.102654
Manyi Xu , Lei Zhang , Bin Wang , Lei Fu , Shaochen Guo , Xi Chen , Weiyan Zhang , Gang Li , Peng Li , Haihong Huang , Yu Lu

Objectives

NTB-3119M, a novel benzothiopyranone derivative identified through comprehensive drug development studies, was selected as a promising antituberculosis (anti-TB) candidate. This study systematically evaluated its anti-TB efficacy in vitro and in vivo.

Methods

In vitro analyses encompassed antimicrobial susceptibility testing to determine minimum inhibitory concentrations (MICs) against Mycobacterium tuberculosis H37Rv, 10 drug-susceptible clinical isolates, and 30 multidrug-resistant (MDR) strains, alongside evaluations of minimal bactericidal concentrations (MBCs) using H37Rv and seven clinical isolates. Additionally, intracellular anti-mycobacterial activity was assessed in H37Rv-infected macrophages, and cytotoxicity was profiled through MTT assays on Vero cells. In vivo studies utilized acute and chronic murine tuberculosis infection models to investigate the dose-dependent efficacy of NTB-3119M (50 and 100 mg/kg) against H37Rv, with concurrent comparative histopathological analysis of lung and spleen tissues.

Results

NTB-3119M demonstrated superior in vitro potency against both drug-sensitive and drug-resistant M. tuberculosis strains compared to first-line agents, Isoniazid (INH), Rifampicin (RIF), Moxifloxacin (MOFX), Levofloxacin (LVFX), and Streptomycin (SM), exhibiting comparable activity to PBTZ169. Time-kill curves for NTB-3119M indicate its potent bactericidal activity. Meanwhile, No cytotoxicity was observed on Vero cells. Spontaneous resistant mutants of NTB-3119M appears at a frequency of 6.44 × 10−7 to 3.65 × 10−6. Most importantly, NTB-3119M demonstrates comparable activity of PBTZ169 and better bactericidal activity against M. tuberculosis than INH and RIF in the 50- and 100- mg/kg groups in acute and chronic murine models.

Conclusion

Our research provided comprehensive evidence that NTB-3119M with increased water solubility and bioavailability based on previous research performed excellent anti-tuberculosis activity and less cytotoxicity, which effectively tackled the undesirable drug properties associated with previous benzothiopyrone derivatives. It is warranted that NTB-3119M, as a highly promising candidate anti tuberculosis drug, deserves further research and clinical trial.
目的通过综合药物开发研究,鉴定出一种新型苯并噻吩吡喃酮衍生物ntb - 3119m,作为抗结核药物的候选药物。本研究系统评价了其体外和体内抗结核效果。方法采用体外药敏试验确定对结核分枝杆菌H37Rv、10株药敏临床分离株和30株多药耐药(MDR)菌株的最低抑菌浓度(mic),同时对H37Rv和7株临床分离株的最低杀菌浓度(MBCs)进行评估。此外,在h37rv感染的巨噬细胞中评估细胞内抗分枝杆菌活性,并通过MTT测定Vero细胞的细胞毒性。体内研究采用急性和慢性小鼠结核感染模型,研究NTB-3119M(50和100 mg/kg)对H37Rv的剂量依赖性作用,同时对肺和脾组织进行比较组织病理学分析。结果与一线药物异烟肼(INH)、利福平(RIF)、莫西沙星(MOFX)、左氧氟沙星(LVFX)和链霉素(SM)相比,sntb - 3119m对药敏和耐药结核分枝杆菌均表现出更强的体外药效,其活性与PBTZ169相当。NTB-3119M的时间杀伤曲线表明其具有较强的杀菌活性。同时,对Vero细胞无细胞毒性作用。NTB-3119M的自发耐药突变体出现频率为6.44 × 10−7 ~ 3.65 × 10−6。最重要的是,在急性和慢性小鼠模型中,NTB-3119M在50和100 mg/kg组中表现出与PBTZ169相当的活性,并且对结核分枝杆菌的杀菌活性优于INH和RIF。结论NTB-3119M具有较高的水溶性和生物利用度,具有较好的抗结核活性和较低的细胞毒性,有效地解决了以往苯并噻唑吡酮类药物的不良药性问题。NTB-3119M作为一种极具发展前景的抗结核候选药物,值得进一步研究和临床试验。
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Tuberculosis
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