Pub Date : 2024-02-27DOI: 10.1016/j.tube.2024.102500
Jeremy J. Yang , Aaron Goff , David J. Wild , Ying Ding , Ayano Annis , Randy Kerber , Brian Foote , Anurag Passi , Joel L. Duerksen , Shelley London , Ana C. Puhl , Thomas R. Lane , Miriam Braunstein , Simon J. Waddell , Sean Ekins
Tuberculosis (TB) is still a major global health challenge, killing over 1.5 million people each year, and hence, there is a need to identify and develop novel treatments for Mycobacterium tuberculosis (M. tuberculosis). The prevalence of infections caused by nontuberculous mycobacteria (NTM) is also increasing and has overtaken TB cases in the United States and much of the developed world. Mycobacterium abscessus (M. abscessus) is one of the most frequently encountered NTM and is difficult to treat. We describe the use of drug-disease association using a semantic knowledge graph approach combined with machine learning models that has enabled the identification of several molecules for testing anti-mycobacterial activity. We established that niclosamide (M. tuberculosis IC90 2.95 μM; M. abscessus IC90 59.1 μM) and tribromsalan (M. tuberculosis IC90 76.92 μM; M. abscessus IC90 147.4 μM) inhibit M. tuberculosis and M. abscessus in vitro. To investigate the mode of action, we determined the transcriptional response of M. tuberculosis and M. abscessus to both compounds in axenic log phase, demonstrating a broad effect on gene expression that differed from known M. tuberculosis inhibitors. Both compounds elicited transcriptional responses indicative of respiratory pathway stress and the dysregulation of fatty acid metabolism.
{"title":"Computational drug repositioning identifies niclosamide and tribromsalan as inhibitors of Mycobacterium tuberculosis and Mycobacterium abscessus","authors":"Jeremy J. Yang , Aaron Goff , David J. Wild , Ying Ding , Ayano Annis , Randy Kerber , Brian Foote , Anurag Passi , Joel L. Duerksen , Shelley London , Ana C. Puhl , Thomas R. Lane , Miriam Braunstein , Simon J. Waddell , Sean Ekins","doi":"10.1016/j.tube.2024.102500","DOIUrl":"https://doi.org/10.1016/j.tube.2024.102500","url":null,"abstract":"<div><p>Tuberculosis (TB) is still a major global health challenge, killing over 1.5 million people each year, and hence, there is a need to identify and develop novel treatments for <em>Mycobacterium tuberculosis</em> (<em>M. tuberculosis</em>). The prevalence of infections caused by nontuberculous mycobacteria (NTM) is also increasing and has overtaken TB cases in the United States and much of the developed world. <em>Mycobacterium abscessus (M. abscessus)</em> is one of the most frequently encountered NTM and is difficult to treat. We describe the use of drug-disease association using a semantic knowledge graph approach combined with machine learning models that has enabled the identification of several molecules for testing anti-mycobacterial activity. We established that niclosamide (<em>M. tuberculosis</em> IC<sub>90</sub> 2.95 μM; <em>M. abscessus</em> IC<sub>90</sub> 59.1 μM) and tribromsalan (<em>M. tuberculosis</em> IC<sub>90</sub> 76.92 μM; <em>M. abscessus</em> IC<sub>90</sub> 147.4 μM) inhibit <em>M. tuberculosis</em> and <em>M. abscessus in vitro</em>. To investigate the mode of action, we determined the transcriptional response of <em>M. tuberculosis</em> and <em>M. abscessus</em> to both compounds in axenic log phase, demonstrating a broad effect on gene expression that differed from known <em>M. tuberculosis</em> inhibitors. Both compounds elicited transcriptional responses indicative of respiratory pathway stress and the dysregulation of fatty acid metabolism.</p></div>","PeriodicalId":23383,"journal":{"name":"Tuberculosis","volume":"146 ","pages":"Article 102500"},"PeriodicalIF":3.2,"publicationDate":"2024-02-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S147297922400026X/pdfft?md5=55713d804b4f2ee2b52938a2411c9b61&pid=1-s2.0-S147297922400026X-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140014707","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Drug resistance to tuberculosis (TB) has become an obstacle in eliminating tuberculosis. The transmission of drug-resistant TB from patients increases the incidence of primary drug-resistant (DR) TB in individuals who are in close contact. Therefore, it is necessary to incorporate an immunological approach into preventive therapy. This study focuses on the activity of lysosomal enzymes, oxygen bursts, and the attachment ability of macrophages among individuals diagnosed with active drug-resistant TB compared with close contacts with latent TB or healthy cases. We measured macrophage oxygen burst ability (Water-soluble tetrazolium salt (WST) test, Nitric Oxide production, and myeloperoxidase activity) and the degradative ability of lysosomes (activity of the β-glucuronidase and acid phosphatase enzymes). Six active DR-TB patients and 18 close-contact cases (8 Latent Tuberculosis Infection (LTBI); 10 healthy) were recruited at Universitas Indonesia Hospital. The macrophage attachment of the LTBI group was higher than in the other groups. NO production, myeloperoxidase activity, β-glucuronidase, and acid phosphatase were higher in the active DR-TB group. A negative correlation was uncovered between phagocytosis and NO production, myeloperoxidase activity, and lysosomal enzymes. The difference in macrophage function is expected to be a further reference in active DR-TB treatment or preventive therapy.
结核病(TB)的耐药性已成为消除结核病的障碍。患者耐药性结核病的传播增加了密切接触者原发性耐药性结核病的发病率。因此,有必要在预防性治疗中加入免疫学方法。本研究重点研究了与潜伏肺结核患者或健康病例的密切接触者相比,确诊为活动性耐药肺结核患者的溶酶体酶活性、氧爆发以及巨噬细胞的附着能力。我们测量了巨噬细胞的氧爆发能力(水溶性四唑盐(WST)试验、一氧化氮产生量和髓过氧化物酶活性)和溶酶体的降解能力(β-葡糖醛酸酶和酸性磷酸酶的活性)。印度尼西亚大学医院招募了 6 名活动性 DR-TB 患者和 18 名密切接触者(8 名潜伏肺结核感染者(LTBI);10 名健康者)。LTBI组的巨噬细胞附着率高于其他组。活动性 DR-TB 组的 NO 生成量、髓过氧化物酶活性、β-葡萄糖醛酸酶和酸性磷酸酶较高。吞噬作用与 NO 生成、髓过氧化物酶活性和溶酶体酶之间呈负相关。巨噬细胞功能的差异有望成为活动性 DR-TB 治疗或预防性治疗的进一步参考。
{"title":"Lysosomal enzymes and the oxygen burst capability of monocyte-derived macrophages in active drug-resistant tuberculosis patients in relation to cell attachment","authors":"Febriana Catur Iswanti , Kurnia Maidarmi Handayani , Ardiana Kusumaningrum , Tomohiko Yamazaki , Diah Handayani , Mohamad Sadikin","doi":"10.1016/j.tube.2024.102498","DOIUrl":"10.1016/j.tube.2024.102498","url":null,"abstract":"<div><p>Drug resistance to tuberculosis (TB) has become an obstacle in eliminating tuberculosis. The transmission of drug-resistant TB from patients increases the incidence of primary drug-resistant (DR) TB in individuals who are in close contact. Therefore, it is necessary to incorporate an immunological approach into preventive therapy. This study focuses on the activity of lysosomal enzymes, oxygen bursts, and the attachment ability of macrophages among individuals diagnosed with active drug-resistant TB compared with close contacts with latent TB or healthy cases. We measured macrophage oxygen burst ability (Water-soluble tetrazolium salt (WST) test, Nitric Oxide production, and myeloperoxidase activity) and the degradative ability of lysosomes (activity of the β-glucuronidase and acid phosphatase enzymes). Six active DR-TB patients and 18 close-contact cases (8 Latent Tuberculosis Infection (LTBI); 10 healthy) were recruited at Universitas Indonesia Hospital. The macrophage attachment of the LTBI group was higher than in the other groups. NO production, myeloperoxidase activity, β-glucuronidase, and acid phosphatase were higher in the active DR-TB group. A negative correlation was uncovered between phagocytosis and NO production, myeloperoxidase activity, and lysosomal enzymes. The difference in macrophage function is expected to be a further reference in active DR-TB treatment or preventive therapy.</p></div>","PeriodicalId":23383,"journal":{"name":"Tuberculosis","volume":"146 ","pages":"Article 102498"},"PeriodicalIF":3.2,"publicationDate":"2024-02-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S1472979224000246/pdfft?md5=15ba43fa91118601eebf75ab840f7b87&pid=1-s2.0-S1472979224000246-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140017912","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-02-20DOI: 10.1016/j.tube.2024.102497
Maria Eduarda de Albuquerque Borborema , Débora Elienai de Oliveira Miranda , Thays Maria Costa de Lucena , Virgínia Maria Barros de Lorena , Michelle Christiane da Silva Rabello , Jaqueline de Azevêdo Silva
Tuberculosis (TB) is an infectious disease displaying a multifactorial pathology. The immunomodulatory role attributed to steroid hormones, such as vitamin D3 (VD3) and 17β-estradiol (E2), highlighted the importance of these hormones against Mycobacterium tuberculosis (Mtb) infection. In order to understand their influence upon gene expression of immune and inflammatory responsive genes against Mtb we tested it in vitro using peripheral blood mononuclear cells (PBMCs). Cells were pretreated with VD3 (50 ng/mL) or E2 (100 nM/mL) and co-cultured with H37Rv Mtb or stimulated with lipopolysaccharide from Escherichia coli (LPS). After 24 h and 72 h of co-culture the Mtb viability in macrophages test was performed, as well the total RNA isolation for gene expression analysis by RT-qPCR of the following target genes: NLRP3, DC-SIGN, IL-1β, and IL-10. We also measured IL-10, TNF, IFN-γ, IL-4, IL-6, and IL-2 supernatant levels. As the main results, we found that VD3 and E2 downregulated the expression of inflammatory genes NLRP3, IL-1β, and IL-10 expression in Mtb co-cultured cells. Finally, VD3 treatment increased the release of the cytokine IFN-γ in Mtb-infected cells, while E2 treatment inhibited the release of IL-10, TNF, IFN-γ, and IL-6. Therefore, we report an immunogenetic influence of VD3 and E2 upon Mtb co-culture.
{"title":"Steroid immune responsive gene regulation in Mycobacterium tuberculosis infection in vitro","authors":"Maria Eduarda de Albuquerque Borborema , Débora Elienai de Oliveira Miranda , Thays Maria Costa de Lucena , Virgínia Maria Barros de Lorena , Michelle Christiane da Silva Rabello , Jaqueline de Azevêdo Silva","doi":"10.1016/j.tube.2024.102497","DOIUrl":"10.1016/j.tube.2024.102497","url":null,"abstract":"<div><p>Tuberculosis (TB) is an infectious disease displaying a multifactorial pathology. The immunomodulatory role attributed to steroid hormones, such as vitamin D<sub>3</sub> (VD<sub>3</sub>) and 17β-estradiol (E<sub>2</sub>), highlighted the importance of these hormones against <em>Mycobacterium tuberculosis</em> (<em>Mtb</em>) infection. In order to understand their influence upon gene expression of immune and inflammatory responsive genes against <em>Mtb</em> we tested it <em>in vitro</em> using peripheral blood mononuclear cells (PBMCs). Cells were pretreated with VD<sub>3</sub> (50 ng/mL) or E<sub>2</sub> (100 nM/mL) and co-cultured with <em>H37Rv Mtb</em> or stimulated with lipopolysaccharide from <em>Escherichia coli</em> (LPS). After 24 h and 72 h of co-culture the <em>Mtb</em> viability in macrophages test was performed, as well the total RNA isolation for gene expression analysis by RT-qPCR of the following target genes: <em>NLRP3</em>, <em>DC-SIGN</em>, <em>IL-1β</em>, and <em>IL-10</em>. We also measured IL-10, TNF, IFN-γ, IL-4, IL-6, and IL-2 supernatant levels. As the main results, we found that VD<sub>3</sub> and E<sub>2</sub> downregulated the expression of inflammatory genes <em>NLRP3</em>, <em>IL-1β,</em> and <em>IL-10</em> expression in <em>Mtb</em> co-cultured cells. Finally, VD<sub>3</sub> treatment increased the release of the cytokine IFN-γ in <em>Mtb-</em>infected cells, while E<sub>2</sub> treatment inhibited the release of IL-10, TNF, IFN-γ, and IL-6. Therefore, we report an immunogenetic influence of VD<sub>3</sub> and E<sub>2</sub> upon <em>Mtb</em> co-culture.</p></div>","PeriodicalId":23383,"journal":{"name":"Tuberculosis","volume":"146 ","pages":"Article 102497"},"PeriodicalIF":3.2,"publicationDate":"2024-02-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139919976","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-02-20DOI: 10.1016/j.tube.2024.102496
Wei-Wei Ma , Ling-Chao Wang , De-An Zhao , Na Wei , Jun-Wei Cui , Shu-Jun Li
<div><h3>Background</h3><p>Tuberculosis (TB) is not only related to infection but also involves immune factors. This study explores the changes in T-lymphocyte subsets in children with TB who are human immunodeficiency virus (HIV)-negative and examines their relationship using chest computed tomography (CT) scans. Additionally, the study identifies risk factors for severe TB (STB) in children and establishes relevant risk prediction models.</p></div><div><h3>Methods</h3><p>We recruited 235 participants between 2018 and 2022, comprising 176 paediatric patients with TB who were HIV-negative and 59 age-matched children with bacterial community-acquired pneumonia (CAP). We quantitatively analysed and compared T-lymphocyte subsets between the two groups and among different types of TB infection. Both univariate and multivariate analyses of clinical and laboratory characteristics were conducted to identify independent risk factors for STB in children and to establish a risk prediction model.</p></div><div><h3>Results</h3><p>The absolute counts of CD3, CD4 and CD8 T-cells in children with TB infection decreased significantly compared with bacterial CAP. The percentage of CD8 T-cells increased, whereas the percentage of CD4 T-cells did not change significantly. The absolute count of CD3, CD4 and CD8 T-cells in extrapulmonary TB (EPTB) was significantly higher than in extra-respiratory TB, with unchanged subset percentages. According to chest CT lesion classification, CD4 T-cell counts decreased significantly in S3 compared with S1 or S2, with no significant change in CD3 and CD8 T-cell counts and percentages. No significant differences were observed in lymphocyte subset counts and percentages between S1 and S2. Univariate analyses indicated that factors such as age, symptom duration, white blood cell count, platelet count, neutrophil-to-lymphocyte ratio (NLR), erythrocyte sedimentation rate, prealbumin level, albumin level, globulin level, albumin/globulin (A/G) ratio, high-sensitivity C-reactive protein (Hs-CRP) level and CD4 and CD8 T-cell counts are associated with STB. Multivariate logistic regression analysis revealed that age, Hs-CRP level, NLR, symptom duration and A/G ratio are independent risk factors for STB in children. Increased age, Hs-CRP levels and NLR, along with decreased A/G, correlate with increased susceptibility to STB. A nomogram model, based on these independent risk factors, demonstrated an area under the receiver operating characteristics curve of 0.867 (95% CI: 0.813–0.921). Internal verification confirmed the model's accuracy, with the calibration curve approaching the ideal and the Hosmer–Lemeshow goodness-of-fit test showing consistent results (χ<sup>2</sup> = 12.212, p = 0.142).</p></div><div><h3>Conclusion</h3><p>In paediatric patients with TB, the absolute counts of all lymphocyte subsets were considerably reduced compared with those in patients with bacterial CAP. Clinicians should consider the possibility of EPTB infecti
背景结核病(TB)不仅与感染有关,还涉及免疫因素。本研究探讨了人类免疫缺陷病毒(HIV)阴性肺结核患儿T淋巴细胞亚群的变化,并使用胸部计算机断层扫描(CT)检查了它们之间的关系。此外,该研究还确定了儿童重症结核病(STB)的风险因素,并建立了相关的风险预测模型。方法我们在 2018 年至 2022 年间招募了 235 名参与者,其中包括 176 名 HIV 阴性的结核病儿科患者和 59 名年龄匹配的细菌性社区获得性肺炎(CAP)患儿。我们定量分析并比较了两组患者之间以及不同类型肺结核感染之间的 T 淋巴细胞亚群。我们对临床和实验室特征进行了单变量和多变量分析,以确定儿童 STB 的独立风险因素并建立风险预测模型。CD8 T 细胞的百分比有所增加,而 CD4 T 细胞的百分比变化不大。肺外结核(EPTB)中 CD3、CD4 和 CD8 T 细胞的绝对数量明显高于呼吸道外结核,但亚群百分比没有变化。根据胸部 CT 病变分类,与 S1 或 S2 相比,S3 的 CD4 T 细胞数量明显减少,CD3 和 CD8 T 细胞数量和百分比无明显变化。S1 和 S2 的淋巴细胞亚群数量和百分比没有明显差异。单变量分析表明,年龄、症状持续时间、白细胞计数、血小板计数、中性粒细胞与淋巴细胞比值(NLR)、红细胞沉降率、前白蛋白水平、白蛋白水平、球蛋白水平、白蛋白/球蛋白(A/G)比值、高敏 C 反应蛋白(Hs-CRP)水平以及 CD4 和 CD8 T 细胞计数等因素与 STB 相关。多变量逻辑回归分析表明,年龄、Hs-CRP水平、NLR、症状持续时间和A/G比值是儿童STB的独立危险因素。年龄、Hs-CRP水平和NLR的增加以及A/G比值的降低与STB的易感性增加相关。基于这些独立风险因素的提名图模型显示,接收器操作特征曲线下的面积为 0.867(95% CI:0.813-0.921)。内部验证证实了该模型的准确性,校准曲线接近理想值,Hosmer-Lemeshow 拟合度检验显示结果一致(χ2 = 12.212,P = 0.142)。对于 CD3、CD4 和 CD8 T 细胞计数高于 ERTB 组的肺结核患儿,临床医生应考虑其除呼吸道感染外还感染 EPTB 的可能性。此外,CD4 T 细胞计数与胸部 CT 病变的严重程度密切相关。年龄、症状持续时间、A/G 比值、Hs-CRP 水平和 NLR 被确定为 STB 的独立风险因素。基于这些因素的提名图模型可有效区分和校准儿童 STB 的预测。
{"title":"Analysis of T-lymphocyte subsets and risk factors in children with tuberculosis","authors":"Wei-Wei Ma , Ling-Chao Wang , De-An Zhao , Na Wei , Jun-Wei Cui , Shu-Jun Li","doi":"10.1016/j.tube.2024.102496","DOIUrl":"10.1016/j.tube.2024.102496","url":null,"abstract":"<div><h3>Background</h3><p>Tuberculosis (TB) is not only related to infection but also involves immune factors. This study explores the changes in T-lymphocyte subsets in children with TB who are human immunodeficiency virus (HIV)-negative and examines their relationship using chest computed tomography (CT) scans. Additionally, the study identifies risk factors for severe TB (STB) in children and establishes relevant risk prediction models.</p></div><div><h3>Methods</h3><p>We recruited 235 participants between 2018 and 2022, comprising 176 paediatric patients with TB who were HIV-negative and 59 age-matched children with bacterial community-acquired pneumonia (CAP). We quantitatively analysed and compared T-lymphocyte subsets between the two groups and among different types of TB infection. Both univariate and multivariate analyses of clinical and laboratory characteristics were conducted to identify independent risk factors for STB in children and to establish a risk prediction model.</p></div><div><h3>Results</h3><p>The absolute counts of CD3, CD4 and CD8 T-cells in children with TB infection decreased significantly compared with bacterial CAP. The percentage of CD8 T-cells increased, whereas the percentage of CD4 T-cells did not change significantly. The absolute count of CD3, CD4 and CD8 T-cells in extrapulmonary TB (EPTB) was significantly higher than in extra-respiratory TB, with unchanged subset percentages. According to chest CT lesion classification, CD4 T-cell counts decreased significantly in S3 compared with S1 or S2, with no significant change in CD3 and CD8 T-cell counts and percentages. No significant differences were observed in lymphocyte subset counts and percentages between S1 and S2. Univariate analyses indicated that factors such as age, symptom duration, white blood cell count, platelet count, neutrophil-to-lymphocyte ratio (NLR), erythrocyte sedimentation rate, prealbumin level, albumin level, globulin level, albumin/globulin (A/G) ratio, high-sensitivity C-reactive protein (Hs-CRP) level and CD4 and CD8 T-cell counts are associated with STB. Multivariate logistic regression analysis revealed that age, Hs-CRP level, NLR, symptom duration and A/G ratio are independent risk factors for STB in children. Increased age, Hs-CRP levels and NLR, along with decreased A/G, correlate with increased susceptibility to STB. A nomogram model, based on these independent risk factors, demonstrated an area under the receiver operating characteristics curve of 0.867 (95% CI: 0.813–0.921). Internal verification confirmed the model's accuracy, with the calibration curve approaching the ideal and the Hosmer–Lemeshow goodness-of-fit test showing consistent results (χ<sup>2</sup> = 12.212, p = 0.142).</p></div><div><h3>Conclusion</h3><p>In paediatric patients with TB, the absolute counts of all lymphocyte subsets were considerably reduced compared with those in patients with bacterial CAP. Clinicians should consider the possibility of EPTB infecti","PeriodicalId":23383,"journal":{"name":"Tuberculosis","volume":"146 ","pages":"Article 102496"},"PeriodicalIF":3.2,"publicationDate":"2024-02-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S1472979224000222/pdfft?md5=d9f92cecb2ef90ab4b025bcead611fc8&pid=1-s2.0-S1472979224000222-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139920177","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-02-13DOI: 10.1016/j.tube.2024.102494
Hannah Painter , Sam Willcocks , Andrea Zelmer , Rajko Reljic , Rachel Tanner , Helen Fletcher
Human tuberculosis (TB) is caused by various members of the Mycobacterium tuberculosis (Mtb) complex. Differences in host response to infection have been reported, illustrative of a need to evaluate efficacy of novel vaccine candidates against multiple strains in preclinical studies. We previously showed that the murine lung and spleen direct mycobacterial growth inhibition assay (MGIA) can be used to assess control of ex vivo mycobacterial growth by host cells. The number of mice required for the assay is significantly lower than in vivo studies, facilitating testing of multiple strains and/or the incorporation of other cellular analyses. Here, we provide proof-of-concept that the murine MGIA can be applied to evaluate vaccine-induced protection against multiple Mtb clinical isolates. Using an ancient and modern strain of the Mtb complex, we demonstrate that ex vivo bacillus Calmette–Guérin (BCG)-mediated mycobacterial growth inhibition recapitulates protection observed in the lung and spleen following in vivo infection of mice. Further, we provide the first report of cellular and transcriptional correlates of BCG-induced growth inhibition in the lung MGIA. The ex vivo MGIA represents a promising platform to gain early insight into vaccine performance against a collection of Mtb strains and improve preclinical evaluation of TB vaccine candidates.
{"title":"Demonstrating the utility of the ex vivo murine mycobacterial growth inhibition assay (MGIA) for high-throughput screening of tuberculosis vaccine candidates against multiple Mycobacterium tuberculosis complex strains","authors":"Hannah Painter , Sam Willcocks , Andrea Zelmer , Rajko Reljic , Rachel Tanner , Helen Fletcher","doi":"10.1016/j.tube.2024.102494","DOIUrl":"https://doi.org/10.1016/j.tube.2024.102494","url":null,"abstract":"<div><p>Human tuberculosis (TB) is caused by various members of the <em>Mycobacterium tuberculosis</em> (Mtb) complex. Differences in host response to infection have been reported, illustrative of a need to evaluate efficacy of novel vaccine candidates against multiple strains in preclinical studies. We previously showed that the murine lung and spleen direct mycobacterial growth inhibition assay (MGIA) can be used to assess control of <em>ex vivo</em> mycobacterial growth by host cells. The number of mice required for the assay is significantly lower than <em>in vivo</em> studies, facilitating testing of multiple strains and/or the incorporation of other cellular analyses. Here, we provide proof-of-concept that the murine MGIA can be applied to evaluate vaccine-induced protection against multiple Mtb clinical isolates. Using an ancient and modern strain of the Mtb complex, we demonstrate that <em>ex vivo</em> bacillus Calmette–Guérin (BCG)-mediated mycobacterial growth inhibition recapitulates protection observed in the lung and spleen following <em>in vivo</em> infection of mice. Further, we provide the first report of cellular and transcriptional correlates of BCG-induced growth inhibition in the lung MGIA. The <em>ex vivo</em> MGIA represents a promising platform to gain early insight into vaccine performance against a collection of Mtb strains and improve preclinical evaluation of TB vaccine candidates.</p></div>","PeriodicalId":23383,"journal":{"name":"Tuberculosis","volume":"146 ","pages":"Article 102494"},"PeriodicalIF":3.2,"publicationDate":"2024-02-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S1472979224000209/pdfft?md5=3a411230d0757059acf5f7d8ee705a37&pid=1-s2.0-S1472979224000209-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139749264","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-02-12DOI: 10.1016/j.tube.2024.102493
Yuqing Wu , Andrea Riehle , Barbara Pollmeier , Stephanie Kadow , Fabian Schumacher , Marek Drab , Burkhard Kleuser , Erich Gulbins , Heike Grassmé
Tuberculosis, caused by Mycobacterium tuberculosis, remains one of the deadliest infections in humans. Because Mycobacterium bovis Bacillus Calmette-Guérin (BCG) share genetic similarities with Mycobacterium tuberculosis, it is often used as a model to elucidate the molecular mechanisms of more severe tuberculosis infection. Caveolin-1 has been implied in many physiological processes and diseases, but it's role in mycobacterial infections has barely been studied. We isolated macrophages from Wildtype or Caveolin-1 deficient mice and analyzed hallmarks of infection, such as internalization, induction of autophagy and apoptosis. For in vivo assays we intravenously injected mice with BCG and investigated tissues for bacterial load with colony-forming unit assays, bioactive lipids with mass spectrometry and changes of protein expressions by Western blotting. Our results revealed that Caveolin-1 was important for early killing of BCG infection in vivo and in vitro, controlled acid sphingomyelinase (Asm)-dependent ceramide formation, apoptosis and inflammatory cytokines upon infection with BCG. In accordance, Caveolin-1 deficient mice and macrophages showed higher bacterial burdens in the livers. The findings indicate that Caveolin-1 plays a role in infection of mice and murine macrophages with BCG, by controlling cellular apoptosis and inflammatory host response. These clues might be useful in the fight against tuberculosis.
由结核分枝杆菌引起的结核病仍然是人类最致命的传染病之一。由于牛分枝杆菌(Bacillus Calmette-Guérin,BCG)与结核分枝杆菌在基因上有相似之处,因此经常被用作模型来阐明更严重的结核感染的分子机制。Caveolin-1在许多生理过程和疾病中都有暗示作用,但它在结核分枝杆菌感染中的作用却鲜有研究。我们从野生型或Caveolin-1缺陷型小鼠体内分离出巨噬细胞,并分析了感染的特征,如内化、诱导自噬和细胞凋亡。在体内试验中,我们给小鼠静脉注射卡介苗,并用菌落形成单位测定法检测组织中的细菌量,用质谱法检测生物活性脂质,用 Western 印迹法检测蛋白质表达的变化。我们的研究结果表明,Caveolin-1 在体内和体外对卡介苗感染的早期杀灭具有重要作用,在卡介苗感染时可控制酸性鞘磷脂酶(Asm)依赖的神经酰胺形成、细胞凋亡和炎性细胞因子。因此,缺乏 Caveolin-1 的小鼠和巨噬细胞在肝脏中显示出更高的细菌负荷。研究结果表明,Caveolin-1 通过控制细胞凋亡和宿主炎症反应,在小鼠和巨噬细胞感染卡介苗时发挥作用。这些线索可能有助于抗击结核病。
{"title":"Caveolin-1 affects early mycobacterial infection and apoptosis in macrophages and mice","authors":"Yuqing Wu , Andrea Riehle , Barbara Pollmeier , Stephanie Kadow , Fabian Schumacher , Marek Drab , Burkhard Kleuser , Erich Gulbins , Heike Grassmé","doi":"10.1016/j.tube.2024.102493","DOIUrl":"10.1016/j.tube.2024.102493","url":null,"abstract":"<div><p>Tuberculosis, caused by <em>Mycobacterium tuberculosis</em>, remains one of the deadliest infections in humans. Because <em>Mycobacterium bovis</em> Bacillus Calmette-Guérin (BCG) share genetic similarities with <em>Mycobacterium tuberculosis</em>, it is often used as a model to elucidate the molecular mechanisms of more severe tuberculosis infection. Caveolin-1 has been implied in many physiological processes and diseases, but it's role in mycobacterial infections has barely been studied. We isolated macrophages from Wildtype or Caveolin-1 deficient mice and analyzed hallmarks of infection, such as internalization, induction of autophagy and apoptosis. For <em>in vivo</em> assays we intravenously injected mice with BCG and investigated tissues for bacterial load with colony-forming unit assays, bioactive lipids with mass spectrometry and changes of protein expressions by Western blotting. Our results revealed that Caveolin-1 was important for early killing of BCG infection <em>in vivo</em> and <em>in vitro</em>, controlled acid sphingomyelinase (Asm)-dependent ceramide formation, apoptosis and inflammatory cytokines upon infection with BCG. In accordance, Caveolin-1 deficient mice and macrophages showed higher bacterial burdens in the livers. The findings indicate that Caveolin-1 plays a role in infection of mice and murine macrophages with BCG, by controlling cellular apoptosis and inflammatory host response. These clues might be useful in the fight against tuberculosis.</p></div>","PeriodicalId":23383,"journal":{"name":"Tuberculosis","volume":"147 ","pages":"Article 102493"},"PeriodicalIF":3.2,"publicationDate":"2024-02-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S1472979224000192/pdfft?md5=a28ccebedc8d781a4e2dfdaa37da06ff&pid=1-s2.0-S1472979224000192-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139882544","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-02-12DOI: 10.1016/j.tube.2024.102492
Jiahui Zhu , Marjo Haanpera , Silja Mentula , Olli Vapalahti , Hanna Soini , Tarja Sironen , Ravi Kant , Fathiah Zakham
Background
Data on the molecular epidemiology and transmission of drug-resistant Mycobacterium tuberculosis (MTB) in low-incidence settings with immigration from high-incidence settings is limited.
Method
We included 115 drug-resistant (DR) MTB isolates with whole-genome sequencing data isolated in Finland between 2014 and 2021. Potential transmission clusters were identified using a threshold of 12 single-nucleotide polymorphisms (SNPs). Highly related clusters were identified using a threshold of 5 SNPs.
Result
Of the 115 DR MTB isolates, 31 (27.0%) isolates were from Finnish-born cases and 84 (73.0%) were from foreign-born cases. The proportion of multidrug-resistant (MDR) MTB isolates (30/84, 35.7%) from foreign-born cases was higher than that of MDR MTB isolates from Finnish-born cases (8/31, 25.8%). Lineage 2 (40/115, 34.8%) and lineage 4 (40/115, 34.8%) were the most prevalent lineages. A total of 25 (21.7%) isolates were classified into eight potential transmission clusters (≤12 SNPs). Furthermore, five highly related clusters (≤5 SNPs) were identified, including three DR MTB isolates from Finnish-born cases and 14 DR isolates from foreign-born cases.
Conclusion
The risk of DR MTB transmission between Finnish- and foreign-born persons is not negligible. Further research on clustering analysis in drug-susceptible MTB is worth to inform tuberculosis management and control in low-incidence settings with increasing immigration.
{"title":"Transmission of drug-resistant Mycobacterium tuberculosis isolates between Finnish- and foreign-born cases, 2014–2021: A molecular epidemiological study","authors":"Jiahui Zhu , Marjo Haanpera , Silja Mentula , Olli Vapalahti , Hanna Soini , Tarja Sironen , Ravi Kant , Fathiah Zakham","doi":"10.1016/j.tube.2024.102492","DOIUrl":"https://doi.org/10.1016/j.tube.2024.102492","url":null,"abstract":"<div><h3>Background</h3><p>Data on the molecular epidemiology and transmission of drug-resistant <em>Mycobacterium tuberculosis</em> (MTB) in low-incidence settings with immigration from high-incidence settings is limited.</p></div><div><h3>Method</h3><p>We included 115 drug-resistant (DR) MTB isolates with whole-genome sequencing data isolated in Finland between 2014 and 2021. Potential transmission clusters were identified using a threshold of 12 single-nucleotide polymorphisms (SNPs). Highly related clusters were identified using a threshold of 5 SNPs.</p></div><div><h3>Result</h3><p>Of the 115 DR MTB isolates, 31 (27.0%) isolates were from Finnish-born cases and 84 (73.0%) were from foreign-born cases. The proportion of multidrug-resistant (MDR) MTB isolates (30/84, 35.7%) from foreign-born cases was higher than that of MDR MTB isolates from Finnish-born cases (8/31, 25.8%). Lineage 2 (40/115, 34.8%) and lineage 4 (40/115, 34.8%) were the most prevalent lineages. A total of 25 (21.7%) isolates were classified into eight potential transmission clusters (≤12 SNPs). Furthermore, five highly related clusters (≤5 SNPs) were identified, including three DR MTB isolates from Finnish-born cases and 14 DR isolates from foreign-born cases.</p></div><div><h3>Conclusion</h3><p>The risk of DR MTB transmission between Finnish- and foreign-born persons is not negligible. Further research on clustering analysis in drug-susceptible MTB is worth to inform tuberculosis management and control in low-incidence settings with increasing immigration.</p></div>","PeriodicalId":23383,"journal":{"name":"Tuberculosis","volume":"146 ","pages":"Article 102492"},"PeriodicalIF":3.2,"publicationDate":"2024-02-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S1472979224000180/pdfft?md5=59447be64e2ef863c826da394eb7ac1e&pid=1-s2.0-S1472979224000180-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139744237","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-02-09DOI: 10.1016/j.tube.2024.102482
Binayak Rimal , Chandra M. Panthi , Yi Xie , Daniel C. Belz , Elisa H. Ignatius , Christopher K. Lippincott , Daniel H. Deck , Alisa W. Serio , Gyanu Lamichhane
Mycobacteroides abscessus (Mab, also known as Mycobacterium abscessus) causes opportunistic pulmonary and soft tissue infections that are difficult to cure with existing treatments. Omadacycline, a new tetracycline antibiotic, exhibits potent in vitro and in vivo activity against Mab. As regimens containing multiple antibiotics are required to produce a durable cure for Mab disease, we assessed efficacies of three three-drug combinations in a pre-clinical mouse model of pulmonary Mab disease to identify companion drugs with which omadacycline exhibits the highest efficacy. Additionally, we assessed the susceptibility of Mab recovered from mouse lungs after four weeks of exposure to the three triple-drug regimens. Among the three-drug regimens, omadacycline + imipenem + amikacin produced the largest reduction in Mab burden, whereas omadacycline + imipenem + linezolid exhibited the most effective early bactericidal activity. Omadacycline + linezolid + clofazimine, a regimen that can be administered orally, lacked early bactericidal activity but produced a gradual reduction in the lung Mab burden over time. The robust efficacy exhibited by these three regimens in the mouse model supports their further evaluation in patients with Mab lung disease. As we were unable to isolate drug-resistant Mab mutants at the completion of four weeks of treatment, these triple-drug combinations show promise of producing durable cure and minimizing selection of resistant mutants.
{"title":"Efficacies of three drug regimens containing omadacycline to treat Mycobacteroides abscessus disease","authors":"Binayak Rimal , Chandra M. Panthi , Yi Xie , Daniel C. Belz , Elisa H. Ignatius , Christopher K. Lippincott , Daniel H. Deck , Alisa W. Serio , Gyanu Lamichhane","doi":"10.1016/j.tube.2024.102482","DOIUrl":"https://doi.org/10.1016/j.tube.2024.102482","url":null,"abstract":"<div><p><em>Mycobacteroides abscessus</em> (<em>Mab,</em> also known as <em>Mycobacterium abscessus</em>) causes opportunistic pulmonary and soft tissue infections that are difficult to cure with existing treatments. Omadacycline, a new tetracycline antibiotic, exhibits potent <em>in vitro</em> and <em>in vivo</em> activity against <em>Mab</em>. As regimens containing multiple antibiotics are required to produce a durable cure for <em>Mab</em> disease, we assessed efficacies of three three-drug combinations in a pre-clinical mouse model of pulmonary <em>Mab</em> disease to identify companion drugs with which omadacycline exhibits the highest efficacy. Additionally, we assessed the susceptibility of <em>Mab</em> recovered from mouse lungs after four weeks of exposure to the three triple-drug regimens. Among the three-drug regimens, omadacycline + imipenem + amikacin produced the largest reduction in <em>Mab</em> burden, whereas omadacycline + imipenem + linezolid exhibited the most effective early bactericidal activity. Omadacycline + linezolid + clofazimine, a regimen that can be administered orally, lacked early bactericidal activity but produced a gradual reduction in the lung <em>Mab</em> burden over time. The robust efficacy exhibited by these three regimens in the mouse model supports their further evaluation in patients with <em>Mab</em> lung disease. As we were unable to isolate drug-resistant <em>Mab</em> mutants at the completion of four weeks of treatment, these triple-drug combinations show promise of producing durable cure and minimizing selection of resistant mutants.</p></div>","PeriodicalId":23383,"journal":{"name":"Tuberculosis","volume":"146 ","pages":"Article 102482"},"PeriodicalIF":3.2,"publicationDate":"2024-02-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S1472979224000088/pdfft?md5=386b6f32525281577510225b87d29728&pid=1-s2.0-S1472979224000088-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139744238","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-02-02DOI: 10.1016/j.tube.2024.102481
Xinxin He , Yunguang Wang , Yue Yang , Qiang He , Lifang Sun , Juan Jin
{"title":"Corrigendum to “Quantitative proteomics reveals plasma protein profile and potential pathways in pulmonary tuberculosis patients with and without diabetes” [Tuberculosis 143 (2023) 102424]","authors":"Xinxin He , Yunguang Wang , Yue Yang , Qiang He , Lifang Sun , Juan Jin","doi":"10.1016/j.tube.2024.102481","DOIUrl":"10.1016/j.tube.2024.102481","url":null,"abstract":"","PeriodicalId":23383,"journal":{"name":"Tuberculosis","volume":"146 ","pages":"Article 102481"},"PeriodicalIF":3.2,"publicationDate":"2024-02-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S1472979224000076/pdfft?md5=2955bfccfbe165c5c7d79146cfbbd789&pid=1-s2.0-S1472979224000076-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139661463","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Diagnosing osteoarticular tuberculosis (OATB) and detecting drug resistance is a challenge in an endemic country like India.
Objective
Truenat MTB Plus assay (TruPlus), a chip-based portable machine, was compared with GeneXpert Ultra (GxUltra) for diagnosing drug-resistant OATB.
Design
115 synovial fluid and pus specimens [22 culture-positive confirmed, 58 culture-negative clinically-suspected, 35 non-TB controls] processed between 2017 and 2023 were subjected to TruPlus, GxUltra and multiplex-PCR for diagnosing OATB. They were further screened for rifampicin resistance using TruRif chip. The performance was evaluated against composite reference standard, phenotypic drug susceptibility testing and rpoB gene sequencing.
Results
TruPlus, GxUltra and MPCR detected 77.5 %, 71.25 %, and 83.75 %, cases of OATB, respectively. TruPlus detected five additional cases missed by GxUltra. The performance of TruPlus was comparable to GxUltra (p = 0.074) and to MPCR (p = 0.074), while performance of GxUltra was significantly inferior to MPCR (p = 0.004). The overall agreement with reference standard was substantial for TruPlus and MPCR and moderate for GxUltra. Both TruRif and GxUltra reported 4 cases as rifampicin resistant.
Conclusion
TruPlus along with TruRif offers better sensitivity than GxUltra. Its compact and portable platform allows wider application in peripheral settings, thus making it a pragmatic solution for diagnosing OATB and its drug resistance.
{"title":"Diagnosing osteoarticular tuberculosis and detecting rifampicin resistance: A comparative analysis of Truenat MTB Plus vs GeneXpert Ultra","authors":"Kusum Sharma , Megha Sharma , Aman Sharma , Mandeep Singh Dhillon","doi":"10.1016/j.tube.2024.102483","DOIUrl":"10.1016/j.tube.2024.102483","url":null,"abstract":"<div><h3>Setting</h3><p><span>Diagnosing osteoarticular tuberculosis (OATB) and detecting </span>drug resistance is a challenge in an endemic country like India.</p></div><div><h3>Objective</h3><p>Truenat MTB Plus assay (TruPlus), a chip-based portable machine, was compared with GeneXpert Ultra (GxUltra) for diagnosing drug-resistant OATB.</p></div><div><h3>Design</h3><p><span>115 synovial fluid and pus specimens [22 culture-positive confirmed, 58 culture-negative clinically-suspected, 35 non-TB controls] processed between 2017 and 2023 were subjected to TruPlus, GxUltra and multiplex-PCR for diagnosing OATB. They were further screened for </span>rifampicin resistance using TruRif chip. The performance was evaluated against composite reference standard, phenotypic drug susceptibility testing and rpoB gene sequencing.</p></div><div><h3>Results</h3><p>TruPlus, GxUltra and MPCR detected 77.5 %, 71.25 %, and 83.75 %, cases of OATB, respectively. TruPlus detected five additional cases missed by GxUltra. The performance of TruPlus was comparable to GxUltra (p = 0.074) and to MPCR (p = 0.074), while performance of GxUltra was significantly inferior to MPCR (p = 0.004). The overall agreement with reference standard was substantial for TruPlus and MPCR and moderate for GxUltra. Both TruRif and GxUltra reported 4 cases as rifampicin resistant.</p></div><div><h3>Conclusion</h3><p>TruPlus along with TruRif offers better sensitivity than GxUltra. Its compact and portable platform allows wider application in peripheral settings, thus making it a pragmatic solution for diagnosing OATB and its drug resistance.</p></div>","PeriodicalId":23383,"journal":{"name":"Tuberculosis","volume":"145 ","pages":"Article 102483"},"PeriodicalIF":3.2,"publicationDate":"2024-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139661211","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}