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Epidemiology and molecular characterization of Mycobacterium tuberculosis including a drug-resistant strain associated with mortality of Asian elephants in Nepal 2019–2022 2019-2022 年尼泊尔亚洲象结核分枝杆菌的流行病学和分子特征,包括与亚洲象死亡有关的耐药菌株。
IF 2.8 3区 医学 Q3 IMMUNOLOGY Pub Date : 2024-07-26 DOI: 10.1016/j.tube.2024.102550
Arjun Pandit , Jeewan Thapa , Amir Sadaula , Yasuhiko Suzuki , Chie Nakajima , Susan K. Mikota , Naresh Subedi , Bijaya Kumar Shrestha , Michito Shimozuru , Bhawana Shrestha , Bijendra Raya , Sanjay Chaudhary , Sarad Paudel , Toshio Tsubota

Tuberculosis (TB) is an emerging threat to the survival of elephants in Nepal. We investigated the lung tissue samples from nine elephants that died from 2019 to 2022 in Nepal using culture, conventional PCR, and loop-mediated isothermal amplification (LAMP) and then performed genotyping of five PCR-positive isolates to understand the possible transmission dynamics of Mycobacterium tuberculosis (Mtb). Results showed that two-thirds (6/9) of elephants were confirmed to be infected from Mtb by LAMP, 5/9 by PCR, and 4/9 by culture. Genotyping of Mtb isolates showed that elephants were infected with the Indo-Oceanic and Beijing lineages including an isoniazid-resistant Beijing lineage. MIRU-VNTR-based phylogeny, gyrA, and katG sequencing showed the possibility of ongoing transmission of Indo-Oceanic lineages and likely transmission of the drug-resistant Beijing lineage from human to elephant. Implementation of comprehensive surveillance and preventive measures are urgently needed to address this zoonotic disease and protect elephants from TB in Nepal.

结核病(TB)是尼泊尔大象生存面临的新威胁。我们使用培养、传统 PCR 和环介导等温扩增(LAMP)技术调查了 2019 年至 2022 年期间在尼泊尔死亡的 9 头大象的肺组织样本,然后对 5 个 PCR 阳性分离物进行了基因分型,以了解结核分枝杆菌(Mtb)可能的传播动态。结果显示,三分之二(6/9)的大象通过 LAMP、5/9 通过 PCR 和 4/9 通过培养证实感染了 Mtb。Mtb 分离物的基因分型显示,大象感染了印度洋系和北京系,其中包括耐异烟肼的北京系。基于 MIRU-VNTR 的系统发育、gyrA 和 katG 测序表明,印度洋系有可能继续传播,耐药北京系也有可能从人类传播给大象。尼泊尔急需采取全面的监测和预防措施来应对这种人畜共患病,保护大象免受结核病的危害。
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引用次数: 0
Detection of Mycobacterium tuberculosis transrenal DNA in urine samples among adults in Peru 秘鲁成年人尿液样本中结核分枝杆菌跨肾DNA的检测。
IF 2.8 3区 医学 Q3 IMMUNOLOGY Pub Date : 2024-07-25 DOI: 10.1016/j.tube.2024.102549
Annelies W. Mesman , Roger I. Calderon , Laura Hauns , Nira R. Pollock , Milagros Mendoza , Rebecca C. Holmberg , Molly F. Franke

Diagnosis of pulmonary tuberculosis (TB) relies on a sputum sample, which cannot be obtained from all symptomatic individuals. Mycobacterium tuberculosis (Mtb) transrenal DNA (trDNA) has been detected in urine, an easily obtainable, noninvasive, alternative sample type. However, reported sensitivities have been variable and likely depend on collection and assay procedures and aspects of trDNA biology. We analyzed three serial urine samples from each of 75 adults with culture-confirmed pulmonary TB disease in Lima, Peru for detection of trDNA using short-fragment real-time PCR. Additionally, we examined host, urine, and sampling factors associated with detection. Overall per-sample sensitivity was 38 % (95 % Confidence Interval [CI] 30–45 %). On an individual level (i.e., any of the three samples positive), sensitivity was 73 % (95 % CI: 62–83 %). Sensitivity was highest among samples from patients with smear-positive TB, 92 % (95 % CI: 62–100 %). Specificity from a single sample from each of 10 healthy controls was 100 % (95 % CI: 69–100 %). Adjusting our assay positivity threshold increased individual-level sensitivity to 88 % (95 % CI: 78–94 %) overall without affecting the specificity. We did not find associations between Mtb trDNA detection and individual characteristics or urine sample characteristics. Overall, our results support the potential of trDNA detection for TB diagnosis.

肺结核(TB)的诊断依赖于痰液样本,但并不是所有有症状的人都能获得痰液样本。结核分枝杆菌(Mtb)经肾DNA(trDNA)可在尿液中检测到,这是一种容易获得、非侵入性的替代样本类型。然而,报告的灵敏度不一,可能取决于收集和检测程序以及 trDNA 的生物学特性。我们使用短片段实时 PCR 分析了秘鲁利马 75 名经培养确诊的肺结核病成人每人的三份序列尿样,以检测 trDNA。此外,我们还研究了与检测相关的宿主、尿液和采样因素。每个样本的总体灵敏度为 38%(95% 置信区间 [CI] 30-45%)。单个样本(即三个阳性样本中的任何一个)的灵敏度为 73%(95% 置信区间:62-83%)。涂片阳性肺结核患者样本的灵敏度最高,为 92 %(95 % CI:62-100 %)。10 个健康对照组样本中每个样本的特异性为 100%(95% CI:69-100%)。在不影响特异性的情况下,调整检测阳性阈值可将个体水平的灵敏度总体提高到 88 %(95 % CI:78-94 %)。我们没有发现Mtb trDNA检测与个体特征或尿样特征之间存在关联。总之,我们的研究结果证明了 trDNA 检测在结核病诊断中的潜力。
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引用次数: 0
Metformin modulates corticosteroids hormones in adrenals cells promoting Mycobacterium tuberculosis elimination in human macrophages 二甲双胍调节肾上腺细胞中的皮质类固醇激素,促进人类巨噬细胞清除结核分枝杆菌。
IF 2.8 3区 医学 Q3 IMMUNOLOGY Pub Date : 2024-07-24 DOI: 10.1016/j.tube.2024.102548
Oscar E. Gonzalez-Muñiz , Adrián Rodriguez-Carlos , Alan Santos-Mena , Yolanda M. Jacobo-Delgado , Irma Gonzalez-Curiel , Cesar Rivas-Santiago , Gabriela Navarro-Tovar , Bruno Rivas-Santiago

Research suggests that both tuberculosis (TB) and type 2 diabetes mellitus (T2DM) have an immuno-endocrine imbalance characterized by dysregulated proinflammatory molecules and hormone levels (high cortisol/DHEA ratio), impeding an effective immune response against Mycobacterium tuberculosis (Mtb) driven by cytokines, antimicrobial peptides (AMPs), and androgens like DHEA. Insulin, sulfonylurea derivatives, and metformin are commonly used glucose-lowering drugs in patients suffering from TB and T2DM. For this comorbidity, metformin is an attractive target to restore the immunoendocrine mechanisms dysregulated against Mtb. This study aimed to assess whether metformin influences cortisol and DHEA synthesis in adrenal cells and if these hormones influence the expression of proinflammatory cytokines and AMPs in Mtb-infected macrophages. Our results suggest that metformin may enhance DHEA synthesis while maintaining cortisol homeostasis. In addition, supernatants from metformin-treated adrenal cells decreased mycobacterial loads in macrophages, which related to rising proinflammatory cytokines and AMP expression (HBD-2 and 3). Intriguingly, we find that HBD-3 and LL-37 can modulate steroid synthesis in adrenal cells with diminished levels of cortisol and DHEA, highlighting the importance of crosstalk communication between adrenal hormones and these effectors of innate immunity. We suggest that metformin's effects can promote innate immunity against Mtb straight or through modulation of corticosteroid hormones.

研究表明,肺结核(TB)和 2 型糖尿病(T2DM)都存在免疫内分泌失衡的问题,其特点是促炎分子和激素水平失调(皮质醇/DHEA 比值过高),从而阻碍了在细胞因子、抗菌肽(AMP)和雄激素(如 DHEA)驱动下针对结核分枝杆菌(Mtb)的有效免疫反应。胰岛素、磺脲类衍生物和二甲双胍是结核病和 T2DM 患者常用的降糖药物。对于这种合并症,二甲双胍是一个有吸引力的靶点,可用于恢复对 Mtb 失调的免疫内分泌机制。本研究旨在评估二甲双胍是否会影响肾上腺细胞中皮质醇和 DHEA 的合成,以及这些激素是否会影响受 Mtb 感染的巨噬细胞中促炎细胞因子和 AMPs 的表达。我们的研究结果表明,二甲双胍可在维持皮质醇平衡的同时促进 DHEA 的合成。此外,二甲双胍处理过的肾上腺细胞上清液减少了巨噬细胞中的分枝杆菌负荷,这与促炎细胞因子和 AMP 表达(HBD-2 和 3)的上升有关。耐人寻味的是,我们发现 HBD-3 和 LL-37 可以调节肾上腺细胞中的类固醇合成,同时降低皮质醇和 DHEA 的水平,这凸显了肾上腺激素与这些先天性免疫效应因子之间串联沟通的重要性。我们认为,二甲双胍的作用可以直接或通过调节皮质类固醇激素来促进针对Mtb的先天性免疫。
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引用次数: 0
Host urinary biomarkers in HIV positive and HIV negative patients with tubercular uveitis and other uveitic diseases 患有结核性葡萄膜炎和其他葡萄膜病的 HIV 阳性和 HIV 阴性患者的宿主尿液生物标志物
IF 2.8 3区 医学 Q3 IMMUNOLOGY Pub Date : 2024-07-23 DOI: 10.1016/j.tube.2024.102547
Dian P. van der Westhuizen , Candice I. Snyders , Martin Kidd , Gerhard Walzl , Novel N. Chegou , Derrick P. Smit

Purpose

To determine if host urinary biomarker profiles could distinguish between tubercular uveitis (TBU) and other uveitic diseases (OUD) in patients with and without HIV infection.

Methods

Concentrations of 29 different host biomarkers were measured in urine samples using the Luminex platform. Data were analyzed to describe differences between patients diagnosed with and without TBU and with and without HIV co-infection.

Results

One-hundred-and-eighteen urine samples were collected and 39% participants were diagnosed as TBU+. Mean age TBU+ was 39.3±13.6 years with 45.7% males. Anterior and panuveitis and unilateral involvement were most common. 32.6% were TBU+HIV+ (median CD4+=215) while 40.2% were OUD+HIV+ (median CD4+=234). Only sVEGF3 was decreased in TBU+ versus OUD+ (p=0.03), regardless of HIV status. Some biomarkers were significantly raised in HIV+ TBU+ compared to HIV- TBU+: sIL-6Rα, CD30, sRAGE , sTNFR I&-II, IP-10, MIP-1β, sEGFR and Ferritin. HIV+ OUD+ had increased sVEGFR3, CD30, sIL-6Rα, IP-10, sTNFR I&-II, Ferritin and Haptoglobin compared to HIV- OUD+. VEGF-A (p = 0.04) was decreased in HIV+ OUD+ versus HIV- OUD+.

Conclusion

Decreased urinary concentrations of VEGFR3 were observed in TBU+ compared to TBU-. HIV+ individuals demonstrated increased concentrations of multiple urinary analytes when compared to HIV- patients with uveitis.

目的 确定宿主尿液生物标志物图谱能否区分感染和未感染艾滋病病毒的患者中的结核性葡萄膜炎(TBU)和其他葡萄膜疾病(OUD)。结果 收集了 118 份尿样,39% 的参与者被诊断为 TBU+。TBU+患者的平均年龄为 39.3±13.6 岁,男性占 45.7%。前葡萄膜炎和泛葡萄膜炎以及单侧受累最为常见。32.6%为TBU+HIV+(中位数CD4+=215),40.2%为OUD+HIV+(中位数CD4+=234)。只有 sVEGF3 在 TBU+ 与 OUD+ 之间有所下降(p=0.03),与 HIV 感染状况无关。与 HIV- TBU+ 相比,HIV+ TBU+ 的一些生物标志物明显升高:sIL-6Rα、CD30、sRAGE、sTNFR I&-II、IP-10、MIP-1β、sEGFR 和铁蛋白。与 HIV- OUD+ 相比,HIV+ OUD+ 的 sVEGFR3、CD30、sIL-6Rα、IP-10、sTNFR I&-II、铁蛋白和高铁血红蛋白均有所增加。VEGF-A(p = 0.04)在 HIV+ OUD+ 与 HIV- OUD+ 相比有所下降。与患有葡萄膜炎的 HIV- 患者相比,HIV+ 患者尿液中多种分析物的浓度升高。
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引用次数: 0
Study on the role and molecular mechanism of METTL3-mediated miR-29a-3p in the inflammatory response of spinal tuberculosis METTL3介导的miR-29a-3p在脊柱结核炎症反应中的作用及分子机制研究
IF 2.8 3区 医学 Q3 IMMUNOLOGY Pub Date : 2024-07-18 DOI: 10.1016/j.tube.2024.102546
Xiaojun Ma , Yuxin Gao , Zhibo Ren , Hui Dong , Xu Zhang , Ningkui Niu

Background

Spinal Tuberculosis (STB) is a common cause of spinal malformation caused by extrapulmonary tuberculosis in developing countries, which seriously affects the quality of life of patients. It was found that the expression of miRNAs in macrophages was stable, specific and readily available after Mycobacterium tuberculosis (MTB) infection. Our research group determined the differential expression of miR-29a-3p in the vertebra of spinal tuberculosis and intervertebral disc lesions through RNAs chip screening and bioinformatics analysis. However, the specific molecular mechanism of miR-29a-3p in the inflammatory response of spinal tuberculosis remains unclear.

Objective

In this study, we mainly discussed the expression of miR-29a-3p in the focal tissue of spinal tuberculosis and the role and molecular mechanism of miR-29a-3p mediated by METTL3 in the inflammatory response of spinal tuberculosis.

Methods

The tissues of 15 cases of lumbar degenerative diseases and vertebral lesions of spinal tuberculosis were collected, and the THP-1 macrophage model infected by Mycobacterium tuberculosis was constructed, and verified by qRT-PCR, Western blot, fluorescence in situ hybridization, immunohistochemistry, Cell fluorescence and ELISA.

Results and conclusion

We found that the expression of miR-29a-3p was significantly down-regulated in the vertebral body and disc lesion tissues of patients with spinal tuberculosis. Overexpression of miR-29a-3p inhibited the levels of inflammatory factors including tumor necrosis factor-α (TNF-α), interleukin-1β (IL-1β) and interleukin-6 (IL-6), and inhibition of miR-29a-3p expression promoted the release of the levels of TNF-α, IL-1β and IL-6 inflammatory factors. Our study also shows that knockout of methyltransferase 3 (METTL3) can significantly reduce the expression of miR-29a-3p and promote the release of pro-inflammatory cytokines in macrophages.

背景脊柱结核(STB)是发展中国家常见的由肺外结核引起的脊柱畸形,严重影响患者的生活质量。研究发现,在结核分枝杆菌(MTB)感染后,巨噬细胞中 miRNAs 的表达具有稳定性、特异性和易得性。我们的研究小组通过 RNAs 芯片筛选和生物信息学分析,确定了 miR-29a-3p 在脊柱结核和椎间盘病变椎体中的差异表达。目的 本研究主要探讨 miR-29a-3p 在脊柱结核病灶组织中的表达,以及 METTL3 介导的 miR-29a-3p 在脊柱结核炎症反应中的作用和分子机制。方法 收集15例腰椎退行性疾病和脊柱结核椎体病变组织,构建结核分枝杆菌感染的THP-1巨噬细胞模型,并通过qRT-PCR、Western blot、荧光原位杂交、免疫组化、细胞荧光和ELISA等方法进行验证。结果与结论我们发现,在脊柱结核患者的椎体和椎间盘病变组织中,miR-29a-3p 的表达明显下调。过表达 miR-29a-3p 可抑制肿瘤坏死因子-α(TNF-α)、白细胞介素-1β(IL-1β)和白细胞介素-6(IL-6)等炎症因子的水平,而抑制 miR-29a-3p 的表达则会促进 TNF-α、IL-1β 和 IL-6 等炎症因子水平的释放。我们的研究还表明,敲除甲基转移酶3(METTL3)可显著降低miR-29a-3p的表达,促进巨噬细胞中促炎细胞因子的释放。
{"title":"Study on the role and molecular mechanism of METTL3-mediated miR-29a-3p in the inflammatory response of spinal tuberculosis","authors":"Xiaojun Ma ,&nbsp;Yuxin Gao ,&nbsp;Zhibo Ren ,&nbsp;Hui Dong ,&nbsp;Xu Zhang ,&nbsp;Ningkui Niu","doi":"10.1016/j.tube.2024.102546","DOIUrl":"10.1016/j.tube.2024.102546","url":null,"abstract":"<div><h3>Background</h3><p>Spinal Tuberculosis (STB) is a common cause of spinal malformation caused by extrapulmonary tuberculosis in developing countries, which seriously affects the quality of life of patients. It was found that the expression of miRNAs in macrophages was stable, specific and readily available after Mycobacterium tuberculosis (MTB) infection. Our research group determined the differential expression of miR-29a-3p in the vertebra of spinal tuberculosis and intervertebral disc lesions through RNAs chip screening and bioinformatics analysis. However, the specific molecular mechanism of miR-29a-3p in the inflammatory response of spinal tuberculosis remains unclear.</p></div><div><h3>Objective</h3><p>In this study, we mainly discussed the expression of miR-29a-3p in the focal tissue of spinal tuberculosis and the role and molecular mechanism of miR-29a-3p mediated by METTL3 in the inflammatory response of spinal tuberculosis.</p></div><div><h3>Methods</h3><p>The tissues of 15 cases of lumbar degenerative diseases and vertebral lesions of spinal tuberculosis were collected, and the THP-1 macrophage model infected by Mycobacterium tuberculosis was constructed, and verified by qRT-PCR, Western blot, fluorescence in situ hybridization, immunohistochemistry, Cell fluorescence and ELISA.</p></div><div><h3>Results and conclusion</h3><p>We found that the expression of miR-29a-3p was significantly down-regulated in the vertebral body and disc lesion tissues of patients with spinal tuberculosis. Overexpression of miR-29a-3p inhibited the levels of inflammatory factors including tumor necrosis factor-α (TNF-α), interleukin-1β (IL-1β) and interleukin-6 (IL-6), and inhibition of miR-29a-3p expression promoted the release of the levels of TNF-α, IL-1β and IL-6 inflammatory factors. Our study also shows that knockout of methyltransferase 3 (METTL3) can significantly reduce the expression of miR-29a-3p and promote the release of pro-inflammatory cytokines in macrophages.</p></div>","PeriodicalId":23383,"journal":{"name":"Tuberculosis","volume":"148 ","pages":"Article 102546"},"PeriodicalIF":2.8,"publicationDate":"2024-07-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S1472979224000726/pdfft?md5=cc5548338614bb1ad9040d2badd745e8&pid=1-s2.0-S1472979224000726-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141841998","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Preclinical tests for salicylhydrazones derivatives to explore their potential for new antituberculosis agents 对水杨酰肼衍生物进行临床前试验,探索其作为新型抗结核药物的潜力
IF 2.8 3区 医学 Q3 IMMUNOLOGY Pub Date : 2024-07-16 DOI: 10.1016/j.tube.2024.102545
Andressa Lorena Ieque , Carolina Trevisolli Palomo , Vitória Gabriela de Freitas Spanhol , Maria Luiza Fróes da Motta Dacome , José Júnior do Carmo Pereira , Francielli Cavalcante Candido , Katiany Rizzieri Caleffi-Ferracioli , Vera Lucia Dias Siqueira , Rosilene Fressatti Cardoso , Fábio Vandresen , Vanessa Guimarães Alves-Olher , Regiane Bertin de Lima Scodro

Purpose

This study target the synthesis of 22 salicylhydrazones derivatives to apply in vitro screening to explore their potential in the search for new anti-TB prototypes drugs.

Methods

The minimum inhibitory concentration (MIC) were evaluated against Mycobacterium tuberculosis (Mtb) H37Rv and clinical isolates. Drug combination assay, cytotoxicity assay, ethidium bromide accumulation assay (EtBr) and in silico analysis regarding the absorption, distribution, metabolism, excretion and toxicity (ADMET) and pharmacological properties were also performed.

Results

Three most promising compounds were selected (10, 11 and 18) to proceed with screening tests. Compound 18 presented the lowest MIC value (0.49 μg/mL) against Mtb H37Rv strain, followed by compounds 11 (3.9 μg/mL) and 10 (7.8 μg/mL). All compounds showed activity against drug susceptible and resistant clinical isolates. Cytotoxicity results were promising for all salicylhydrazones, with SI values up to 4,205 for compound 18. The derivative 10 was the only one that demonstrated a non-promising cytotoxicity scenario for a single cell line. All derivatives showed an additive effect (FICI >0.5 to 4.0) in combination with isoniazid, ethambutol and rifampicin.

Conclusion

All salicylhydrazones showed potential in the screening tests performed in this study and compound 18 stood out due to its activity against susceptible and resistant bacilli at low concentrations and low cytotoxicity.

目的 本研究以合成 22 种水杨酰肼衍生物为目标,进行体外筛选,探索其在寻找新的抗结核原型药物方面的潜力。方法 评估了对结核分枝杆菌(Mtb)H37Rv 和临床分离株的最小抑菌浓度(MIC)。此外,还进行了药物组合试验、细胞毒性试验、溴化乙锭蓄积试验(EtBr)以及吸收、分布、代谢、排泄和毒性(ADMET)和药理特性方面的硅学分析。化合物 18 对 Mtb H37Rv 株的 MIC 值最低(0.49 μg/mL),其次是化合物 11(3.9 μg/mL)和 10(7.8 μg/mL)。所有化合物对药物敏感性和耐药性临床分离株都显示出活性。所有水杨酰肼的细胞毒性结果都很好,化合物 18 的 SI 值高达 4 205。只有衍生物 10 对单一细胞系的细胞毒性不乐观。所有衍生物在与异烟肼、乙胺丁醇和利福平联用时均显示出相加效应(FICI>0.5 至 4.0)。
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引用次数: 0
Functional analysis of the Mycobacterium bovis AF2122/97 PhoPR system 牛分枝杆菌 AF2122/97 PhoPR 系统的功能分析
IF 2.8 3区 医学 Q3 IMMUNOLOGY Pub Date : 2024-07-14 DOI: 10.1016/j.tube.2024.102544
Jose Maria Urtasun-Elizari , Ruoyao Ma , Hayleah Pickford , Damien Farrell , Gabriel Gonzalez , Viktor Perets , Chie Nakajima , Yasuhiko Suzuki , David E. MacHugh , Apoorva Bhatt , Stephen V. Gordon

The PhoPR system is a master regulator in Mycobacterium tuberculosis. A key difference between M. tuberculosis and Mycobacterium bovis is a G71I substitution in the M. bovis PhoR orthologue. Functional studies of the M. bovis PhoPR system have generated conflicting findings, with some research suggesting that the M. bovis PhoPR is defective while others indicate it is functional.

We sought to revisit the functionality of the M. bovis PhoPR system. To address this, we constructed a phoPR mutant in the reference strain M. bovis AF2122/97. We employed a combination of growth assays and transcriptomics analyses to assess the phenotype of the mutant vs wild type and complemented strains. We found that the M. bovis AF2122/97 ΔphoPR mutant showed a growth defect on solid and liquid media compared to the wild type and complemented strains. The transcriptome of the M. bovis AF2122/97 ΔphoPR mutant was also altered as compared to wild type, including differential expression of genes involved in lipid metabolism and secretion. Our work provides further insight into the activity of PhoPR in M. bovis and underlines the importance of the PhoPR system as a master regulator of gene expression in the Mycobacterium tuberculosis complex.

PhoPR 系统是结核分枝杆菌的主调节器。结核分枝杆菌与牛分枝杆菌的一个主要区别是牛分枝杆菌 PhoR 直向同源物中的 G71I 取代。对牛分枝杆菌 PhoPR 系统的功能研究结果相互矛盾,一些研究表明牛分枝杆菌 PhoPR 存在缺陷,而另一些研究则表明其功能正常。为此,我们在参考菌株 M. bovis AF2122/97 中构建了一个 PhoPR 突变体。我们采用生长测定和转录组学分析相结合的方法来评估突变体与野生型和互补菌株的表型。我们发现,与野生型和互补型菌株相比,M. bovis AF2122/97 ΔphoPR突变体在固体和液体培养基上表现出生长缺陷。与野生型相比,M. bovis AF2122/97 ΔphoPR突变体的转录组也发生了改变,包括参与脂质代谢和分泌的基因的不同表达。我们的工作进一步揭示了 PhoPR 在牛海绵状芽孢杆菌中的活性,并强调了 PhoPR 系统作为结核分枝杆菌复合体中基因表达主调控因子的重要性。
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引用次数: 0
Corrigendum to “Genomic investigation of bone tuberculosis highlighted the role of subclinical pulmonary tuberculosis in transmission” [Tuberculosis (2024) 102534] 骨结核基因组调查凸显亚临床肺结核在传播中的作用》[结核病(2024)102534]更正。
IF 2.8 3区 医学 Q3 IMMUNOLOGY Pub Date : 2024-07-13 DOI: 10.1016/j.tube.2024.102539
Jinfeng Yin , Guangxuan Yan , Liyi Qin , Chendi Zhu , Jun Fan , Yuwei Li , Junnan Jia , Zhaojun Wu , Hui Jiang , Muhammad Tahir Khan , Jiangdong Wu , Naihui Chu , Howard E. Takiff , Qian Gao , Shibing Qin , Qingyun Liu , Weimin Li
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引用次数: 0
Repression of BRD4 mitigates NLRP3 inflammasome-mediated pyroptosis in Mycobacterium-infected macrophages by repressing endoplasmic reticulum stress 通过抑制内质网应激,抑制 BRD4 可减轻分枝杆菌感染的巨噬细胞中 NLRP3 炎症体介导的脓毒症
IF 2.8 3区 医学 Q3 IMMUNOLOGY Pub Date : 2024-07-11 DOI: 10.1016/j.tube.2024.102542
Qi-yuan Wang, Xiu-feng Yu, Wen-lan Ji

Tuberculosis (TB) is the leading cause of human death worldwide due to Mycobacterium tuberculosis (Mtb) infection. Multiple lines of evidences have illuminated the emerging role of NLRP3 inflammasome-mediated pyroptosis in the clearance of pathogenic infection. In the current study, we sought to investigate the functional role and feasible potential mechanism of BRD4 in Mtb-infected macrophages. We observed that BRD4 was distinctly ascended in THP-1 macrophages upon Mtb infection. Functionally, intervention of BRD4 or pretreated with JQ1 obviously restricted Mtb-triggered cell pyroptosis, as evidenced by declination of protein level of the specific pyroptosis markers including Cleaved Caspase 1, gasdermin D (GSDMD-N) and Cleaved-IL-1β. In the meanwhile, disruption of BRD4 or JQ1 application remarkably prohibited excessive inflammatory responses as characterized by reduce the production of the inflammatory factors such as IL-1β and IL-18. Concomitantly, disruption of BRD4 or administrated with JQ1 manifestly repressed Mtb-aroused Nod-like receptor family pyrindomain-containing 3 (NLRP3) inflammasome activation, as witnessed by attenuation of protein levels of NLRP3, Pro-Caspase1 and apoptosis-associated speck-like protein (ASC). The above findings clearly demonstrated that suppression of BRD4 exerted great influence on regulating Mtb-elicited inflammatory response by coordinating NLRP3 inflammasome-mediated pyroptosis. More importantly, perturbation of BRD4 or JQ1 employment notably restrained endoplasmic reticulum (ER) stress triggered by Mtb-infection, as reflected by noticeably lessened the levels of GRP78, CHOP and ATF6. In terms of mechanism, ER stress agonist tunicamycin profoundly abrogated the favorable effects of BRD4 inhibition on Mtb-triggered pyroptosis, inflammation reaction and inflammasome activation. Collectively, these preceding outcomes strongly illuminated that inhibition of BRD4 targeted ER stress to retard NLRP3 inflammasome activation and subsequent cell pyroptosis and prevention of inflammatory response in Mtb-infected macrophages, highlighting that blocking BRD4 might serve as a promising candidate for protection against Mtb-triggered inflammatory injury.

结核病(TB)是全球人类因结核分枝杆菌(Mtb)感染而死亡的主要原因。多种证据表明,NLRP3 炎症体介导的热蛋白沉积在清除病原体感染中发挥着新的作用。在本研究中,我们试图探究 BRD4 在受 Mtb 感染的巨噬细胞中的功能作用和可行的潜在机制。我们观察到,Mtb感染后,BRD4在THP-1巨噬细胞中明显升高。从功能上看,干预BRD4或用JQ1预处理明显限制了Mtb触发的细胞猝灭,具体表现为特定猝灭标志物蛋白水平的下降,包括裂解Caspase 1、gasdermin D(GSDMD-N)和裂解IL-1β。同时,干扰 BRD4 或应用 JQ1 能显著抑制过度炎症反应,其特征是减少了 IL-1β 和 IL-18 等炎症因子的产生。同时,阻断BRD4或使用JQ1明显抑制了Mtb引起的Nod样受体家族含吡喃吲哚域3(NLRP3)炎性组的激活,这体现在NLRP3、Pro-Caspase1和凋亡相关斑点样蛋白(ASC)的蛋白水平降低。上述研究结果清楚地表明,抑制BRD4可通过协调NLRP3炎症小体介导的脓毒症,对调控Mtb诱发的炎症反应产生重大影响。更重要的是,干扰BRD4或JQ1的就业可明显抑制Mtb感染引发的内质网(ER)应激,这反映在GRP78、CHOP和ATF6水平的明显降低上。在机理方面,ER应激激动剂妥卡霉素能显著削弱抑制BRD4对Mtb引发的脓毒症、炎症反应和炎症小体激活的有利影响。总之,上述结果有力地揭示了抑制BRD4可以靶向ER应激,延缓NLRP3炎性体的激活,从而延缓Mtb感染巨噬细胞的细胞凋亡和炎症反应的发生。
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引用次数: 0
Optimization of Mycobacterium tuberculosis DNA processing prior to whole genome sequencing 优化全基因组测序前的结核分枝杆菌 DNA 处理。
IF 2.8 3区 医学 Q3 IMMUNOLOGY Pub Date : 2024-07-11 DOI: 10.1016/j.tube.2024.102543
Samira Dziri , Julie Marin , Pauline Quagliaro , Charlotte Genestet , Oana Dumitrescu , Etienne Carbonnelle , Typhaine Billard-Pomares

The process of whole genome sequencing of the Mycobacterium tuberculosis complex is dependent on complete the inactivation of the strain and subsequent DNA extraction. The objective of this study was to optimise the two steps.

Firstly, the efficacy of Triton X-100 as a solvent for the inactivation step was evaluated. This solvent has been demonstrated to be effective in killing bacteria and is less toxic than the previously employed chloroform. For the extraction step, two lysis methods were evaluated: enzymatic (B1 protocol) and mechanical (B2 protocol). For whole genome sequencing, the Nextera XT DNA library preparation protocol was performed for both the B1 and B2 protocols. Subsequently, each library was subjected to whole-genome sequencing. The results demonstrated that heat lysis inactivation with Triton was effective, with no bacteria remaining viable following this treatment. The enzymatic and mechanical extraction protocols yielded comparable results in terms of DNA quantity and quality. The sequencing results showed that there was no significant difference in read depths between the two protocols. In conclusion, for MTBC strains, we recommend the use of our Triton inactivation method, which meets biosafety expectations.

结核分枝杆菌复合体的全基因组测序过程取决于菌株的完全灭活和随后的 DNA 提取。本研究的目的是优化这两个步骤。首先,评估了 Triton X-100 作为灭活步骤溶剂的功效。这种溶剂已被证明能有效杀死细菌,而且比以前使用的氯仿毒性更低。在提取步骤中,评估了两种裂解方法:酶法(B1 方案)和机械法(B2 方案)。对于全基因组测序,B1 和 B2 方案均采用 Nextera XT DNA 文库制备方案。随后,对每个文库进行全基因组测序。结果表明,用 Triton 进行热裂解灭活是有效的,处理后没有细菌存活。酶法和机械提取法在 DNA 数量和质量方面的结果相当。测序结果显示,两种方案的读取深度没有明显差异。总之,对于 MTBC 菌株,我们建议使用我们的 Triton 灭活方法,这种方法符合生物安全预期。
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引用次数: 0
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Tuberculosis
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