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Grading Habitats for Ticks by Mapping a Suitability Index based on Remotely Sensed Data and Meta® population dataset in Aosta Valley, NW Italy. 根据意大利西北部奥斯塔山谷的遥感数据和 Meta® 种群数据集绘制适宜度指数,对蜱虫栖息地进行分级。
IF 0.5 4区 农林科学 Q4 VETERINARY SCIENCES Pub Date : 2024-11-05 DOI: 10.12834/VetIt.3481.24368.2
Annalisa Viani, Tommaso Orusa, Maria Lucia Mandola, Serena Robetto, Chiara Nogarol, Enrico Borgogno Mondino, Riccardo Orusa

Ticks represent a reservoir of zoonotic pathogens, and their numbers are increasing largely in wildlife. This work is aimed at producing maps of suitable habitats for ticks in Aosta Valley, Italy based on multitemporal EO data and veterinary datasets (tick species and distribution in wild hosts). EO data were processed in Google Earth Engine considering the following inputs: A) Growing Degree Ticks (GDT), B) NDVI from MOD09GA, C) NDVI entropy, D) distance from water bodies, E) topography, F) rainfalls from CHIRPS as monthly composites along the 2020, 2021 and 2022 years. Ticks were collected from hunted, injured, and found-dead wild animals ( Sus scrofa, Capreolus capreolus, Rupicapra rupicapra, Cervus elaphus); they were labeled at species level using taxonomic keys. Between September 2020 and December 2022, a total of 90 ticks were collected from 89 wild animals. Ixodes ricinus was the most prevalent tick species, followed by Dermacentor marginatus and Dermacentor spp. Molecular analyses demonstrated the presence of Anaplasma spp., B. burgdorferi sensu lato and Rickettsia spp. pathogens in infected ticks. To assess human population potential exposure to tick Meta® population dataset was used. In conclusion this study shows the potentialities of Remote sensing improving the technological transfer to the veterinarian sector.

蜱虫是人畜共患病原体的贮藏库,其数量在野生动物中不断增加。这项工作旨在根据多时 EO 数据和兽医数据集(蜱的种类和在野生宿主中的分布)绘制意大利奥斯塔河谷蜱适宜栖息地的地图。在谷歌地球引擎中处理 EO 数据时考虑了以下输入:A) 生长度蜱(GDT),B) MOD09GA 的 NDVI,C) NDVI 熵,D) 与水体的距离,E) 地形,F) CHIRPS 的降雨量,作为 2020、2021 和 2022 年的月度复合数据。蜱虫是从被猎杀、受伤和发现死亡的野生动物(Sus scrofa、Capreolus capreolus、Rupicapra rupicapra、Cervus elaphus)身上收集的;这些蜱虫使用分类学密钥进行物种标记。2020 年 9 月至 2022 年 12 月期间,共从 89 只野生动物身上采集到 90 只蜱虫。分子分析表明,受感染的蜱虫体内存在阿纳普拉丝虫属(Anaplasma spp.)、勃氏杆菌(B. burgdorferi sensu lato)和立克次体(Rickettsia spp.)病原体。为了评估人类接触蜱虫的可能性,使用了 Meta® 人口数据集。总之,这项研究显示了遥感技术在改善兽医行业技术转让方面的潜力。
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引用次数: 0
Being prepared for an avian influenza epidemic with a One Health approach: a cartographic study to identify animal carcasses burial sites in central Italy. 以 "一体健康 "方法为禽流感疫情做好准备:在意大利中部地区开展地图研究,以确定动物尸体掩埋地点。
IF 0.5 4区 农林科学 Q4 VETERINARY SCIENCES Pub Date : 2024-11-05 DOI: 10.12834/VetIt.3475.27131.2
Sabrina Battisti, Paola Scaramozzino, Lucy Nicole Papa Caminiti, Andrea Carvelli

During epidemics, pandemics, or animal disease outbreaks, the large-scale disposal of carcasses presents greater environmental and biosecurity challenges. In Europe, disposal through a rendering plant is the preferred option, but the on-site carcasses burial may be authorised due to logistical and economic advantages. This study utilised a comprehensive GIS-based approach and focuses on the challenges and strategies for large-scale carcass disposal, particularly in the context of avian influenza outbreaks in the Lazio Region of Italy. Integrating data from official geospatial sources regarding presence of environmental restrictions and regulations, factors affecting susceptibility to groundwater contamination, factors affecting soil stability over time, potential burial sites were identified. The resulting map provides decision-makers with valuable information for prompt and efficient response during disease outbreaks. The study underscores the importance of a multidisciplinary approach involving veterinarians, epidemiologists, GIS experts, and geologists. Further research and international consensus are essential to standardize the selection of geographic variables/layers to use in similar projects. This study significantly contributes to the preparedness of environment, health and animal/human interface events.

在流行病、大流行病或动物疾病爆发期间,大规模处理尸体会带来更大的环境和生物安全挑战。在欧洲,通过处理厂处理尸体是首选方案,但由于物流和经济优势,现场掩埋尸体也可能获得授权。本研究采用了一种基于地理信息系统的综合方法,重点关注大规模尸体处理所面临的挑战和策略,尤其是在意大利拉齐奥大区爆发禽流感的背景下。通过整合来自官方地理空间资源的数据,确定了潜在的掩埋地点,包括是否存在环境限制和法规、影响地下水污染易感性的因素、影响土壤长期稳定性的因素等。由此绘制的地图为决策者提供了宝贵的信息,以便在疾病爆发时做出迅速有效的反应。这项研究强调了由兽医、流行病学家、地理信息系统专家和地质学家参与的多学科方法的重要性。进一步的研究和国际共识对于规范类似项目中使用的地理变量/图层的选择至关重要。这项研究大大有助于为环境、健康和动物/人类界面事件做好准备。
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引用次数: 0
Using scenario tree modelling to evaluate the probability of freedom from Enzootic bovine leukosis (EBL) in Italy and Slovenia. 利用情景树模型评估意大利和斯洛文尼亚免于感染牛白血病(EBL)的概率。
IF 0.5 4区 农林科学 Q4 VETERINARY SCIENCES Pub Date : 2024-10-04 DOI: 10.12834/VetIt.3382.22918.2
Angela Fanelli, Jerome Baron, Arianna Comin, Céline Faverjon, Francesco Feliziani, Maria Guelbenzu-Gonzalo, Jaka Hodnik, Carmen Iscaro, Tanja Knific, Eleftherios Meletis, Madalina Mincu, Cecilia Righi, Rosendal Thomas, Marco Tamba, Jenny Frössling, Gerdien Van Schaik

Documented freedom from disease is paramount for international free trade of animals and animal products. This study describes a scenario tree analysis to estimate the probability of freedom from Enzootic bovine leukosis (EBL) in Italy and Slovenia using information gathered via the data collection tool developed in the COST action project SOUND-control. Data on EBL control programmes (CPs) from 2018 to 2021 were used to build the models. Since animals are only sampled on the farm, one surveillance system component (SSC) was considered. The posterior probability of freedom (PostPfree) was estimated in time steps of one year, from 2018 to 2021.  After each year, the calculated from the previous year, combined with the probability of introduction, was used as a prior probability for the next year.  The herd level design prevalence was set to 0.2% in accordance with the Council Directive 64/432/EEC and the within herd design prevalence was set to 15%.  As Slovenia implemented a risk-based surveillance, targeting the herds importing cattle, in its model the design herd prevalence was combined with an average adjusted risk to calculate the effective probability of a herd importing cattle being infected.  The models were run for 10,000 iterations.  Over the study period the mean estimates were: i) for Italy both the surveillance system sensitivity ( SSe) and PostPFree 100%, with no differences between simulations and years, ii) for Slovenia the SSe was 50.5% while the PostPFree was 81.6%.

有据可查的无疫病记录对于动物和动物产品的国际自由贸易至关重要。本研究介绍了一种情景树分析方法,利用 COST 行动项目 SOUND-control 开发的数据收集工具收集的信息,估算意大利和斯洛文尼亚免于感染牛白血病(EBL)的概率。2018年至2021年的EBL控制计划(CP)数据被用于建立模型。由于只在农场对动物进行采样,因此只考虑了一个监控系统组件(SSC)。自由后验概率(PostPfree)的估算以一年为时间单位,从 2018 年到 2021 年。 每年之后,将上一年计算出的结果与引入概率相结合,作为下一年的先验概率。 根据欧盟理事会第 64/432/EEC 号指令,牛群水平设计流行率设定为 0.2%,牛群内设计流行率设定为 15%。 由于斯洛文尼亚针对进口牛群实施基于风险的监控,因此在其模型中,设计牛群流行率与平均调整风险相结合,以计算进口牛群受感染的有效概率。 模型运行了 10,000 次迭代。 在研究期间,平均估计值为:i) 意大利的监控系统敏感性(SSe)和无后遗症概率均为 100%,不同模拟和年份之间无差异;ii) 斯洛文尼亚的监控系统敏感性为 50.5%,无后遗症概率为 81.6%。
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引用次数: 0
Dazed and confused: how map projections affect disease map analysis and perception. An echo from GeoVet2019. 茫然与困惑:地图投影如何影响疾病地图分析和感知。GeoVet2019 的回声。
IF 0.5 4区 农林科学 Q4 VETERINARY SCIENCES Pub Date : 2024-10-03 DOI: 10.12834/VetIt.3492.27657.2
Olaf Berke

Disease maps are integral to spatial epidemiology and public health. The map appearance and analysis of corresponding data may both depend on a map projection used to transform the 3-dimensional world onto a 2-dimensional surface. Map projections necessarily introduce bias - an issue that has not received full attention in the literature. This study aims to demonstrate the impact map projections can have on spatial analysis and disease maps for public health. Case studies applied varying map projections, including the Lambert, Mercator and Robinson projections, to Israel, North Carolina and Southern Ontario as study areas. The effect of projections on various measures, estimates, tests and models was assessed. When the map projection was changed: (i) a distance in Israel increased by 30%; (ii) for Southern Ontario an areal size increased by almost 95%; Moran's I test switched from significant to not; and (iii) a single disease cluster in North Carolina converted into three distinct clusters. Visual bias in disease mapping is unavoidable and should be recognized. Disease maps and spatial analytical inferences, including disease clusters should be reported with their geographic projection. Using geographic coordinates can prevent analytical bias.

疾病地图是空间流行病学和公共卫生不可或缺的一部分。地图的外观和相应数据的分析可能都取决于将三维世界转换到二维表面的地图投影。地图投影必然会带来偏差,而这一问题在文献中尚未得到充分关注。本研究旨在展示地图投影对公共卫生空间分析和疾病地图的影响。案例研究将不同的地图投影,包括兰伯特、墨卡托和罗宾逊投影,应用到以色列、北卡罗来纳州和南安大略省作为研究区域。评估了投影对各种测量、估算、测试和模型的影响。改变地图投影后:(i) 以色列的距离增加了 30%;(ii) 南安大略省的面积增加了近 95%;莫兰 I 检验从显著变为不显著;(iii) 北卡罗来纳州的单一疾病群转变为三个不同的疾病群。疾病绘图中的视觉偏差是不可避免的,应该认识到这一点。疾病分布图和空间分析推断(包括疾病群)应报告其地理投影。使用地理坐标可以避免分析偏差。
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引用次数: 0
Communication Breakdown - Of Disease Clusters, a Trillium and One Health. 通讯中断 - 关于疾病群、三叶草和 "一个健康"。
IF 0.5 4区 农林科学 Q4 VETERINARY SCIENCES Pub Date : 2024-10-03 DOI: 10.12834/VetIt.3483.27128.3
Olaf Berke

One health is based on an interdisciplinary collaboration across professions using a common language. Geographic epidemiology is the study of spatial patterns of population health in a study area. Such spatial patterns (trend, cluster and clustering) require clear definition to be meaningful in science communication. However, the term "disease cluster" has been defined in the literature in various and rather different ways. When geographic epidemiology is unable to make sense of its own concepts it is questionable how respective research results can benefit one health. The goal of this study was to clarify the disease cluster concept. Examples of disease cluster definitions from the literature were used for illustration. The epidemiological triangle of causation (agent, host and environment) was used to conceptualize geographic epidemiological data analysis. The term disease cluster was distinguished from related concepts (clustering, high-risk area, hot spot and outbreak) additionally the semantics and statistical meaning of expectation and prediction were reviewed to further identify the cluster concept as a statistical outlier. The new paradigm of the geographic epidemiological trillium is proposed here and embedded within the spatial generalized linear mixed model to clarify concepts of spatial patterns and guide epidemiological research and teaching.

一体健康 "基于使用共同语言的跨专业跨学科合作。地理流行病学是对研究区域内人口健康空间模式的研究。这种空间模式(趋势、群集和聚类)需要有明确的定义,才能在科学传播中具有意义。然而,文献中对 "疾病群 "一词的定义多种多样,差异相当大。当地理流行病学无法理解自身的概念时,其研究成果如何造福人类健康就成了问题。本研究的目的是澄清疾病群的概念。文献中的疾病集群定义实例被用来进行说明。使用流行病学的三角因果关系(病原体、宿主和环境)来构思地理流行病学数据分析。疾病集群一词与相关概念(集群、高风险地区、热点和爆发)有所区别,此外,还回顾了预期和预测的语义和统计含义,以进一步确定集群概念是一个统计离群值。本文提出了地理流行病学三叶草的新范式,并将其嵌入空间广义线性混合模型中,以澄清空间模式的概念并指导流行病学研究和教学。
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引用次数: 0
A Newcastle disease live virus vaccine is safe and efficacious at various storage conditions. 新城疫活病毒疫苗在各种储存条件下都安全有效。
IF 0.5 4区 农林科学 Q4 VETERINARY SCIENCES Pub Date : 2024-09-18 DOI: 10.12834/VetIt.2980.19377.1
Iffat Huma, Shahan Azeem, Sarwat Naz, Tahir Yaqub, Muhammad Hassan Mushtaq, Muhammad Azam

Pure, potent and efficacious vaccines could help in the control of Newcastle disease (ND). The present study was designed to evaluate the thermo-stability of a live-attenuated ND virus vaccine containing the Mukteswar strain and to genetically characterize the seed virus. Moreover, the presence of extraneous agents (Fowl adenovirus, Mycoplasma, Salmonella Pullorum, and Salmonella Gallinarum) was assessed using polymerase chain reactions (PCR) optimized for detection in a panel. The vaccine was evaluated for its potency and efficacy after storage at 4°C, 25°C and 37°C for 36, 48, 96 and 144 hours. A total of 100 commercial broiler chickens were randomly divided into six groups and immunized with the vaccine stored at specified temperatures for the given times. Blood samples were collected on days 0, 7, 14, 21 and 28 post-vaccination, sera were separated and antibody titers were assessed using hemagglutination inhibition (HI) assay. The data were analyzed by two-way analysis of variance (ANOVA) and multivariate analysis of variance (MANOVA). Reverse-transcription  PCR targeting the F gene of Newcastle disease virus (NDV) and subsequent sequence analysis confirmed the presence of NDV in the vaccine seed (deposited to GenBank Acc. Nos. MK310260 and MK310261). Phylogenetic analysis revealed a close resemblance of the vaccine virus with other Avian Avulaviruses (NDV class II Genotype III viruses and more specifically with NDV Mukteswar vaccine strains), yet it was distinct from NDV class II Pakistani field isolates, which grouped into genotype XIII.2.1. The PCR testing confirmed that the vaccine was free from extraneous agents. The present study's findings propose an alternative rapid PCR-based method to evaluate the purity of NDV live vaccines. Together these data suggest that the tested vaccine is pure, potent and efficacious, yet continuous maintenance of the cold chain for vaccine storage is recommended to maintain its potency and efficacy.

纯净、强效和有效的疫苗有助于控制新城疫(ND)。本研究旨在评估含有 Mukteswar 株系的 ND 病毒减毒活疫苗的热稳定性,并从遗传学角度确定种子病毒的特征。此外,还使用聚合酶链式反应(PCR)评估了疫苗中是否存在外来病原体(鸡腺病毒、支原体、普拉伦沙门氏菌和加里纳氏沙门氏菌),该聚合酶链式反应经过优化,可用于检测疫苗。疫苗在 4°C、25°C 和 37°C 下分别储存 36、48、96 和 144 小时后,对其效力和功效进行了评估。将 100 只商品肉鸡随机分为六组,并在指定温度下按指定时间储存疫苗进行免疫接种。在接种后的第 0、7、14、21 和 28 天采集血样,分离血清,并使用血凝抑制(HI)检测法评估抗体滴度。数据采用双因子方差分析(ANOVA)和多变量方差分析(MANOVA)进行分析。针对新城疫病毒(NDV)F 基因的反转录聚合酶链反应和随后的序列分析证实了疫苗种子中存在 NDV(存入 GenBank Accos.MK310260 和 MK310261)。系统进化分析表明,疫苗病毒与其他禽流感病毒(NDV II 类基因型 III 病毒,更具体地说是与 NDV Mukteswar 疫苗株)非常相似,但它与 NDV II 类巴基斯坦野外分离株不同,后者属于基因型 XIII.2.1。聚合酶链式反应检测证实,疫苗不含外来物。本研究结果提出了另一种基于 PCR 的快速方法来评估 NDV 活疫苗的纯度。这些数据共同表明,所测试的疫苗是纯净、有效和高效的,但建议继续保持疫苗储存的冷链以保持其效力和有效性。
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引用次数: 0
Rare Earth Elements (REEs) in veterinary medicine: practical applications and tissue distribution in terrestrial vertebrate animals. 兽医学中的稀土元素(REEs):陆生脊椎动物的实际应用和组织分布。
IF 0.5 4区 农林科学 Q4 VETERINARY SCIENCES Pub Date : 2024-08-27 DOI: 10.12834/VetIt.3582.26784.1
Antonio Petrini, Giampiero Scortichini, Carmine Merola

Rare earth elements (REEs) have shown promising potential in veterinary medicine, particularly as feed additives and diagnostic and therapeutic tools. Moreover, the increasing industrial use of REEs has raised concerns about their potential environmental contamination and bioaccumulation in animal tissues. While numerous studies have focused on the distribution of REEs in marine and freshwater ecosystems, information regarding their presence in terrestrial environments remains fragmented. This narrative review aims to describe the practical applications of REEs in veterinary medicine, with a specific focus on studies evaluating the potential accumulation of these elements in the tissues of terrestrial vertebrate animals. Additionally, the review addresses research on the intentional residual presence of REEs and in-field studies evaluating the contamination burden from REE exposure in domestic and wild animals. In conclusion, this review identifies critical scientific gaps and provides future research directions to advance understanding of the long-term effects, mechanisms of action, and environmental impacts of REEs in veterinary practices.

稀土元素 (REE) 在兽医领域,特别是作为饲料添加剂、诊断和治疗工具方面显示出巨大的潜力。此外,随着稀土元素在工业上的使用日益增多,人们对其可能造成的环境污染以及在动物组织中的生物蓄积性产生了担忧。虽然大量研究都集中在 REEs 在海洋和淡水生态系统中的分布情况,但有关它们在陆地环境中存在情况的信息仍很零散。本综述旨在介绍 REEs 在兽医学中的实际应用,尤其侧重于评估这些元素在陆生脊椎动物组织中潜在积累的研究。此外,本综述还涉及有关有意残留 REEs 的研究,以及评估家畜和野生动物接触 REE 所造成的污染负担的实地研究。总之,本综述确定了关键的科学差距,并提供了未来的研究方向,以促进对兽医实践中 REEs 的长期影响、作用机制和环境影响的了解。
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引用次数: 0
Pathogenesis of Brucella suis biovar 1 in the armadillo (Chaetophractus villosus). 犰狳(Chaetophractus villosus)体内猪布鲁氏菌生物变种 1 的致病机理。
IF 0.5 4区 农林科学 Q4 VETERINARY SCIENCES Pub Date : 2024-08-09 DOI: 10.12834/VetIt.3007.25510.2
Marta Susana Kin, Hugo Daniel Gimenéz, Fernando Delgado, Luis Samartino, Emma Beatriz Casanave, Marcelo Fort

Brucella suis biovar 1 has the broadest animal host spectrum. Affects domestic animals and wildlife species. The aim of our study was to investigate the pathogenesis of B. suis biovar 1 infection in the armadillo (Chaetophractus villosus) under experimental conditions. One gravid female and three adult males were inoculated with a suspension containing 1×106 CFU/mL (colony-forming units) of B. suis biovar 1 by oral route. In addition, the gravid female and one male received the same suspension by the conjunctival route. A young male and two females not inoculated were kept in contact with the animals inoculated. The animals that tested seropositive were euthanized. All inoculated armadillos showed positive antibody titres 2 weeks post-inoculation. Of the three uninoculated animals, one female was seropositive for Brucella infection.  Brucella was isolated from the spleen, liver, mesenteric lymph nodes, uterus, testes, and urine. Characteristic histologic lesions were found in the epididymis. These results suggest that armadillos can act as a reservoir for the spread of B. suis infection, and the persistence of Brucella in armadillo tissues constitutes a risk for humans, because of the cultural practice of armadillo meat consumption in rural communities.

猪布鲁氏菌生物变种 1 的动物宿主谱最广。可影响家畜和野生动物。我们的研究目的是在实验条件下调查犰狳(Chaetophractus villosus)感染猪布鲁氏菌生物变种 1 的致病机理。我们通过口服给一只怀孕的雌性犰狳和三只成年雄性犰狳接种了含有 1×106 CFU/mL(菌落形成单位)鼠疫杆菌 1 型的悬浮液。此外,该雌性孕妇和一名男性还通过结膜途径接种了同样的悬浮液。未接种的一只年轻雄性和两只雌性与接种动物保持接触。血清检测呈阳性的动物被安乐死。所有接种过的犰狳在接种后 2 周都显示出阳性抗体滴度。在三只未接种的犰狳中,一只雌性犰狳的布鲁氏菌感染血清反应呈阳性。 从脾脏、肝脏、肠系膜淋巴结、子宫、睾丸和尿液中分离出布鲁氏杆菌。在附睾中发现了特征性的组织学病变。这些结果表明,犰狳可以成为传播鼠疫布鲁氏菌感染的贮藏库,由于农村社区有食用犰狳肉的文化习俗,犰狳组织中的布鲁氏菌对人类构成风险。
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引用次数: 0
The "Working Group Land of Fires" Platform for emergency management, data sharing and dissemination. 火灾地区工作组 "应急管理、数据共享和传播平台。
IF 0.5 4区 农林科学 Q4 VETERINARY SCIENCES Pub Date : 2024-08-07 DOI: 10.12834/VetIt.3527.25903.2
Susanna Tora, Alessio Di Lorenzo, Gianluca Ragone, Amedeo D'Antonio, Claudio Marro, Annamaria Conte, Stefania Cavallo, Americo Bonanni, Monica Bucciarelli, Elio Malizia, Angelo Ciavarella, Giacomo Migliorati, Lara Savini

Over the last decades, the Campania Region in Italy has faced an environmental crisis due to the widespread illegal dumping and burning of waste. This has led to the area being notoriously known as the Land of Fires (Terra dei Fuochi - TdF), sparking serious concerns about public health and threatening the region's agricultural sector, one of its economic mainstays. In such a context, a timely, accurate, and reliable flow of information, aimed both at the population and at stakeholders, is crucial for establishing a proper dialogue between institutions and people, driving the empowerment of citizens. To address this crisis, the Italian Government introduced Law 6 of 2014, establishing a multidisciplinary Working Group tasked with identifying and mapping the sites affected by spills and illegal disposal in the territory. The TdF-WG defined a scientific methodology for classifying these sites in terms of prohibition on the cultivation of specific crops, consequently allowing the adoption of appropriate clean up and restoration measures for the impacted sites. This paper describes the data collection process and the IT platform commissioned by the Government to the IZS-TE and used by the TdF-WG to exchange data, knowledge, and technology, thereby fostering efficient and effective crisis management.

过去几十年来,由于非法倾倒和焚烧垃圾的现象十分普遍,意大利坎帕尼亚大区面临着一场环境危机。这导致该地区成为臭名昭著的 "火之国"(Terra dei Fuochi - TdF),引发了对公众健康的严重关切,并威胁到该地区的经济支柱之一--农业部门。在这种情况下,及时、准确、可靠地向民众和利益相关者提供信息,对于在机构和民众之间建立适当的对话、推动公民赋权至关重要。为应对这一危机,意大利政府于 2014 年颁布了第 6 号法律,成立了一个多学科工作组,负责确定和绘制受境内泄漏和非法处置影响的地点。TdF 工作组确定了一种科学方法,根据禁止种植特定作物的情况对这些地点进行分类,从而能够对受影响地点采取适当的清理和恢复措施。本文介绍了数据收集过程以及政府委托 IZS-TE 建立的信息技术平台,TdF-WG 利用该平台交换数据、知识和技术,从而促进高效率和高效益的危机管理。
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引用次数: 0
Distribution and molecular analysis of Subtilase cytotoxin gene (subAB) variants in Shiga toxin-producing Escherichia coli (STEC) isolated from different sources in Iran. 从伊朗不同来源分离的产志贺毒素大肠埃希菌(STEC)中胆碱酯酶细胞毒素基因(subAB)变体的分布和分子分析。
IF 0.5 4区 农林科学 Q4 VETERINARY SCIENCES Pub Date : 2024-07-31 DOI: 10.12834/VetIt.3061.23280.2
Mahdi Askari Badouei, Maziar Jajarmi, Aria Narimani, Taghi Zahraei Salehi, Reza Ghanbarpour, Ali Nemati, Stefano Morabito, Alireza Koochakzadeh

Subtilase exhibits strong cytotoxicity that was first described in O113:H21 strain in Australia as a plasmid- encoded cytotoxin (subAB1). Subsequently, chromosomal variants including subAB2-1, subAB2-2, and subAB2-3 were described. We aimed to investigate the presence of subAB genes in a collection of Shiga toxin-producing Escherichia coli (STEC) strains (n=101) isolated from different sources in Iran. A collection of 101 archived STEC strains isolated from cattle (n=50), goats (n=25), sheep (n=15), wild captive animals (n=8: persian fallow deer, n=3; caspian pony, n=1; Macaca mulatta, n=4), and humans (n=3) during 2007-2016 were analyzed for the detection of different genes encoding the Subtilase variants, plasmidic and chromosomal virulence genes, phylogroups and serogroups. Overall, 57 isolates (56.4%) carried at least one variant of subAB. Most strains from small ruminants including 93% of sheep and 96% of caprine isolates carried at least one chromosomally encoded variant (subAB-2-1 and/or subAb2-2). In contrast, 12 cattle isolates (24%) only harbored the plasmid encoded variant (subAB1). STEC strains from other sources, including deer, pony and humans were positive for subAB-2-1 and/or subAb2-2. Our results reveal the presence of potentially pathogenic genotypes among locus of enterocyte effacement (LEE)-negative isolates, and some host specificity related to Subtilase variants and other virulence markers that may aid in source tracking of STEC during outbreak investigations.

亚丝氨酸酶具有很强的细胞毒性,最早在澳大利亚的 O113:H21 菌株中被描述为一种质粒编码的细胞毒素(subAB1)。随后,包括 subAB2-1、subAB2-2 和 subAB2-3 在内的染色体变体也被描述出来。我们的目的是调查从伊朗不同来源分离的产志贺毒素大肠杆菌(STEC)菌株(n=101)中是否存在 subAB 基因。从牛(n=50)、山羊(n=25)、绵羊(n=15)、野生圈养动物(n=8:对 2007 年至 2016 年期间从牛(n=50)、山羊(n=25)、绵羊(n=15)、野生圈养动物(n=8:波斯秋鹿,n=3;里海矮种马,n=1;猕猴,n=4)和人类(n=3)中分离的 101 株 STEC 菌株进行了分析,以检测编码 Subtilase 变体的不同基因、质粒和染色体毒力基因、系统群和血清群。总体而言,57 个分离株(56.4%)至少携带一种 subAB 变体。大多数来自小型反刍动物的菌株,包括 93% 的绵羊和 96% 的山羊分离物,至少携带一种染色体编码变体(subAB-2-1 和/或 subAb2-2)。相比之下,12 个牛分离物(24%)只携带质粒编码变体(subAB1)。来自鹿、小马和人类等其他来源的 STEC 菌株对 subAB-2-1 和/或 subAb2-2 呈阳性。我们的研究结果表明,在肠细胞脱落位点(LEE)阴性的分离株中存在潜在的致病基因型,而且一些宿主特异性与 Subtilase 变体和其他毒力标记有关,这可能有助于在疫情调查期间追踪 STEC 的来源。
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Veterinaria italiana
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