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Co-circulation and genetic characteristics of porcine circoviruses in postweaning multisystemic wasting syndrome cases in commercial swine farms 猪圆环病毒在商业猪场断奶后多系统消耗综合征病例中的共循环和遗传特征
Q2 Medicine Pub Date : 2023-11-11 DOI: 10.1007/s13337-023-00849-4
Danh Cong Lai, Duyen My Thi Nguyen, Toan Tat Nguyen, Tram Ngoc Thi Ngo, Duy Tien Do
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引用次数: 0
Application of machine learning models for risk estimation and risk prediction of classical swine fever in Assam, India 机器学习模型在印度阿萨姆邦典型猪瘟风险估计和风险预测中的应用
Q2 Medicine Pub Date : 2023-11-10 DOI: 10.1007/s13337-023-00847-6
Kuralayanapalya Puttahonnappa Suresh, Nagendra Nath Barman, Tarushree Bari, Dikshitha Jagadish, Bylaiah Sushma, H. V. Darshan, Sharanagouda S. Patil, Mousumi Bora, Abhijit Deka
{"title":"Application of machine learning models for risk estimation and risk prediction of classical swine fever in Assam, India","authors":"Kuralayanapalya Puttahonnappa Suresh, Nagendra Nath Barman, Tarushree Bari, Dikshitha Jagadish, Bylaiah Sushma, H. V. Darshan, Sharanagouda S. Patil, Mousumi Bora, Abhijit Deka","doi":"10.1007/s13337-023-00847-6","DOIUrl":"https://doi.org/10.1007/s13337-023-00847-6","url":null,"abstract":"","PeriodicalId":23708,"journal":{"name":"VirusDisease","volume":"107 13","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-11-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135137987","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Molecular characterization of G and F protein genes of bovine respiratory syncytial virus detected from dead calves caused by severe respiratory syndrome: emergence of novel mutations and their importance 从严重呼吸综合征死犊中检测到的牛呼吸道合胞病毒G和F蛋白基因的分子特征:新突变的出现及其重要性
Q2 Medicine Pub Date : 2023-11-07 DOI: 10.1007/s13337-023-00846-7
Murat Kaplan, Emre Özan, Kemal Pekmez, Abdurrahman Anıl Çağırgan, Fatih Arslan
{"title":"Molecular characterization of G and F protein genes of bovine respiratory syncytial virus detected from dead calves caused by severe respiratory syndrome: emergence of novel mutations and their importance","authors":"Murat Kaplan, Emre Özan, Kemal Pekmez, Abdurrahman Anıl Çağırgan, Fatih Arslan","doi":"10.1007/s13337-023-00846-7","DOIUrl":"https://doi.org/10.1007/s13337-023-00846-7","url":null,"abstract":"","PeriodicalId":23708,"journal":{"name":"VirusDisease","volume":"51 6","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-11-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135474997","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Evidence for the natural infection of cucurbit chlorotic yellows virus (CCYV) in lettuce plants from India 印度莴苣自然感染葫芦绿黄病毒(CCYV)的证据
Q2 Medicine Pub Date : 2023-11-07 DOI: 10.1007/s13337-023-00848-5
Ashwini Kumar, Shakshi Choudhary, Yvonne A. Lyngdoh, Virendra K. Baranwal, Rakesh K. Jain, Y. B. Basavaraj
{"title":"Evidence for the natural infection of cucurbit chlorotic yellows virus (CCYV) in lettuce plants from India","authors":"Ashwini Kumar, Shakshi Choudhary, Yvonne A. Lyngdoh, Virendra K. Baranwal, Rakesh K. Jain, Y. B. Basavaraj","doi":"10.1007/s13337-023-00848-5","DOIUrl":"https://doi.org/10.1007/s13337-023-00848-5","url":null,"abstract":"","PeriodicalId":23708,"journal":{"name":"VirusDisease","volume":"269 24‐27","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-11-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135475619","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Identification of SSR markers through bulk segregant analysis and inheritance of resistance to yellow vein mosaic disease in okra (Abelmoschus esculentus L. Moench) 黄秋葵抗黄脉花叶病SSR标记的群体分离分析及遗传研究
Q2 Medicine Pub Date : 2023-10-30 DOI: 10.1007/s13337-023-00844-9
Gagandeep Singh, Mamta Pathak, Dharminder Pathak, Navraj Kaur Sarao
{"title":"Identification of SSR markers through bulk segregant analysis and inheritance of resistance to yellow vein mosaic disease in okra (Abelmoschus esculentus L. Moench)","authors":"Gagandeep Singh, Mamta Pathak, Dharminder Pathak, Navraj Kaur Sarao","doi":"10.1007/s13337-023-00844-9","DOIUrl":"https://doi.org/10.1007/s13337-023-00844-9","url":null,"abstract":"","PeriodicalId":23708,"journal":{"name":"VirusDisease","volume":"1 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-10-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"136103094","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Neolamarckia cadamba hosts a putative novel deltapartitivirus: a revelation by transcriptome data-mining Neolamarckia cadamba宿主一种假定的新型三角洲病毒:转录组数据挖掘的启示
Q2 Medicine Pub Date : 2023-10-18 DOI: 10.1007/s13337-023-00845-8
V. Kavi Sidharthan, Mushineni Ashajyothi
{"title":"Neolamarckia cadamba hosts a putative novel deltapartitivirus: a revelation by transcriptome data-mining","authors":"V. Kavi Sidharthan, Mushineni Ashajyothi","doi":"10.1007/s13337-023-00845-8","DOIUrl":"https://doi.org/10.1007/s13337-023-00845-8","url":null,"abstract":"","PeriodicalId":23708,"journal":{"name":"VirusDisease","volume":"55 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-10-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135823798","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Clinical characteristics and predictors of COVID-19 in a community sample from urban areas of Chennai, Southern India 印度南部钦奈城市地区社区样本中COVID-19的临床特征和预测因素
Q2 Medicine Pub Date : 2023-10-10 DOI: 10.1007/s13337-023-00843-w
Sivapriya Murugesan, Hema C. Ramamurthi, Saramma M. Jacob, Srinivas Govindarajulu
{"title":"Clinical characteristics and predictors of COVID-19 in a community sample from urban areas of Chennai, Southern India","authors":"Sivapriya Murugesan, Hema C. Ramamurthi, Saramma M. Jacob, Srinivas Govindarajulu","doi":"10.1007/s13337-023-00843-w","DOIUrl":"https://doi.org/10.1007/s13337-023-00843-w","url":null,"abstract":"","PeriodicalId":23708,"journal":{"name":"VirusDisease","volume":"27 4 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-10-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"136295941","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Phylogenetic analysis of the partial sequences of the env and tax BLV genes reveals the presence of genotypes 1 and 3 in dairy herds of Antioquia, Colombia 对env和tax BLV基因部分序列的系统发育分析显示,基因1型和3型存在于哥伦比亚安蒂奥基亚奶牛群中
Q2 Medicine Pub Date : 2023-10-10 DOI: 10.1007/s13337-023-00836-9
Cristina Úsuga-Monroy, F. J. Díaz, Luis Gabriel González-Herrera, José Julián Echeverry-Zuluaga, Albeiro López-Herrera
Abstract Bovine leukemia virus (BLV) is a retrovirus that primarily infects dairy cows. Although few studies have also used the tax gene, phylogenetic studies of BLV use mostly the env gene. The aim of this work was to establish the circulating genotypes of BLV in specialized dairy cattle from Antioquia, Colombia. Twenty blood samples from Holstein Friesian cows were collected, and their DNA was isolated. A PCR was performed for a partial region of the env and tax genes. A phylogenetic analysis was carried out using the maximum likelihood and Bayesian methods for both genes. Nineteen sequences were identified as genotype 1 by env and tax genes. Only one sequence was clustered with genotype 3 and had the highest proportion of different nucleotide sites compared to other strains. Four amino acid substitutions in the 134 amino acid residue fragment of the Env protein were identified in the Colombian sequences, and three new amino acid substitutions were reported in the 296 amino acid residue fragment of the Tax protein. R43K (Z finger), A185T (Activation domain), and L105F changes were identified in the genotype 3 sample. This genotype has been reported in the United States, Japan, Korea, and Mexico, but so far, not in Colombia. The country has a high rate of imported live animals, semen, and embryos, especially from the United States. Although it is necessary to evaluate samples from other regions of the country, the current results indicate the presence of two BLV genotypes in specialized dairy herds.
牛白血病病毒(BLV)是一种主要感染奶牛的逆转录病毒。虽然很少有研究也使用了tax基因,但BLV的系统发育研究大多使用了env基因。这项工作的目的是在哥伦比亚安蒂奥基亚的专业奶牛中建立BLV的循环基因型。收集了20头荷斯坦弗里西亚奶牛的血液样本,并分离了它们的DNA。对env和tax基因的部分区域进行了PCR。利用最大似然和贝叶斯方法对两个基因进行了系统发育分析。经env和tax基因鉴定为基因1型的序列有19个。只有一个序列与基因型3聚集在一起,与其他菌株相比,不同核苷酸位点的比例最高。在哥伦比亚序列中,Env蛋白的134个氨基酸残基片段中发现了4个氨基酸取代,在Tax蛋白的296个氨基酸残基片段中发现了3个新的氨基酸取代。R43K (Z指)、A185T(激活域)和L105F在基因3型样品中均有变化。这种基因型在美国、日本、韩国和墨西哥都有报道,但到目前为止,在哥伦比亚还没有报道。该国进口活体动物、精液和胚胎的比例很高,尤其是从美国进口。尽管有必要对来自该国其他地区的样本进行评估,但目前的结果表明,在专业奶牛群中存在两种BLV基因型。
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引用次数: 0
Outcomes of COVID-19 in immunocompromised patients: a single center experience. 新冠肺炎在免疫功能低下患者中的结果:单中心经验。
Q2 Medicine Pub Date : 2023-09-01 Epub Date: 2023-08-10 DOI: 10.1007/s13337-023-00832-z
Masoud Mardani, Jafar Mohammadshahi, Roghayeh Teimourpour

Malignancy, bone marrow and organ transplantation are associated with deficient and defective immune systems. Immunocompromised patients are at risk for severe and chronic complication of COVID-19 infection. However, the pathogenesis, diagnosis and management of this comorbidity remain to be elucidated. The purpose of the present study was to describe key aspects of COVID-19 infection in immunocompromised patients. In this retrospective, cross-sectional study, lab findings and outcomes of 418 COVID-19 patients with secondary immunodeficiency disorders admitted to Taleghani Hospital in Tehran, from March 2020 to September 2022 were investigated. Of the 418 immunocompromised patients with COVID-19, 236 (56.5%) ‌ were male and the median age of all studied patients was 56.6 ± 16.4 with range of 14 to 92 years. Totally, 198 (47.4%) of the patients died during hospitalization. Remdesivir was used for treatment of all patients. Mortality rate among patients admitted to ICU ward (86.8%) was significantly higher than non ICU admission (p < 0.001). The death rate in patients with CKD was substantially higher than other underlying disease (p < 0.001). In terms of laboratory finding, there was a significant relationship between ICU admission and worse outcome with WBC count (HR = 1.94, 95% CI = 1. 46-2.59, p < 0.001), PMN count (HR = 1.93, 95% CI = 1.452.56, p < 0.001), Hb (HR = 1.49, 95% CI = 1.042.13, p = 0.028), AST (HR = 2.55, 95% CI = 1.913.41, p < 0.001), BUN (HR = 2.56, 95% CI = 2.063.69, p < 0.001), Cr (HR = 2.63, 95% CI = 1.89-3.64, p < 0.001), Comorbidities index (HR = 1.71, 95% CI = 1.29-2.27, p < 0.001) and aging (HR = 1.91, 95% CI = 1.4-2.54, p < 0.001). Immunocompromised status increased the risk of mortality or worse outcome in patients diagnosed with COVID-19. Our finding showed outcome predicting markers in whom the waned immune system encounter new emerging disease and improved our understanding of COVID-19 virus behavior in immunocompromised individuals.

恶性肿瘤、骨髓和器官移植与免疫系统缺陷和缺陷有关。免疫受损的患者有患新冠肺炎感染严重和慢性并发症的风险。然而,这种合并症的发病机制、诊断和治疗仍有待阐明。本研究的目的是描述免疫功能低下患者感染新冠肺炎的关键方面。在这项回顾性横断面研究中,对2020年3月至2022年9月德黑兰Taleghani医院收治的418名新冠肺炎继发性免疫缺陷患者的实验室结果和结果进行了调查。在418名新冠肺炎免疫功能低下患者中,236人(56.5%)‌ 均为男性,所有研究患者的中位年龄为56.6岁 ± 16.4,年龄14~92岁。住院期间死亡198例(47.4%)。所有患者均使用瑞德西韦进行治疗。入住ICU病房的患者死亡率(86.8%)显著高于非ICU病房(p p p p p = 0.028),AST(小时 = 2.55,95%CI = 1.913.41,p p p p p
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引用次数: 0
First molecular detection of avian polyomavirus from captive psittacine birds in Bangladesh, together with confirmation of beak and feather disease virus co-infection. 孟加拉国首次从圈养的鹦鹉螺中检测到禽多瘤病毒,并证实了喙羽病病毒的共同感染。
Q2 Medicine Pub Date : 2023-09-01 Epub Date: 2023-07-11 DOI: 10.1007/s13337-023-00829-8
Chandan Nath, Md Saddam Hossain, Md Ahaduzzaman

Avian polyomavirus (APV) is an emerging pathogen in many parts of the world responsible for causing significant mortality in captive psittacine birds. The virus spreads slowly, and transboundary movement of birds is one of the potential risk factors for the virus introduction in the naïve population. Bangladesh allows the import of birds, however there is currently no surveillance to screen for APV. Since we confirmed beak and feather disease virus (BFDV) infection in the captive population in our earlier investigation, we hypothesized that APV may also be circulating in Bangladesh. Feather samples were collected from 100 birds (90 psittacine and 10 non-psittacine). The polymerase chain reaction (PCR) was used to detect viral DNA together with sequencing and phylogenetic analysis. This first pilot study confirmed the presence (7%, 7/100) of APV in captive psittacine birds of Bangladesh and almost half (4%, 4/100) of the APV positive birds had the BFDV co-infection. All the PCR-positive birds were asymptomatic and found in live bird markets (LBMs). No significant variation was observed in the detection rate considering species (P = 0.94), age (P = 0.39) or sex (P = 0.55) of birds. According to the results of the phylogenetic study, the APV isolates found in Bangladesh appear to be unrelated to isolates from other geographical areas. These findings provide an evidence of APV circulating in Bangladesh, with or without the co-infection of BFDV. Additional studies are needed to investigate the occurrence of APV/BFDV co-infection in the larger population of Bangladesh and in countries where transboundary bird interaction with Bangladesh may be possible.

禽多瘤病毒(APV)是世界上许多地区出现的一种新病原体,导致圈养鹦鹉大量死亡。病毒传播缓慢,鸟类的越境迁徙是病毒在天真人群中传播的潜在风险因素之一。孟加拉国允许进口鸟类,但目前没有监测APV。由于我们在早期的调查中证实了圈养种群中的喙羽病病毒(BFDV)感染,我们假设APV也可能在孟加拉国传播。从100只鸟(90只鹦鹉螺和10只非鹦鹉螺)身上采集了羽毛样本。聚合酶链式反应(PCR)用于检测病毒DNA,并进行测序和系统发育分析。这项首次试点研究证实,孟加拉国圈养的鹦鹉螺中存在APV(7%,7/100),几乎一半(4%,4/100)的APV阳性鸟类同时感染了BFDV。所有PCR阳性鸟类均无症状,均在活禽市场(LBM)发现。在考虑物种的情况下,检测率没有观察到显著变化(P = 0.94)、年龄(P = 0.39)或性别(P = 0.55)。根据系统发育研究的结果,在孟加拉国发现的APV分离株似乎与其他地理区域的分离株无关。这些发现提供了APV在孟加拉国传播的证据,无论是否同时感染BFDV。需要进行更多的研究,以调查APV/BFDV共同感染在孟加拉国广大人口中以及在可能与孟加拉国发生跨界鸟类相互作用的国家中的发生情况。
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