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All-optical optoacoustics for clinical diagnostics 用于临床诊断的全光学光声技术
IF 28.1 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-10-25 DOI: 10.1038/s41551-024-01270-y
X. Luís Deán-Ben
The quality of three-dimensional optoacoustic images of subcutaneous microvasculature in patients can be enhanced by reducing the scan times of all-optical Fabry–Pérot scanners to a few seconds.
通过将全光学法布里-佩罗扫描仪的扫描时间缩短至几秒钟,可提高患者皮下微血管的三维光声图像质量。
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引用次数: 0
Viscoelastic synthetic antigen-presenting cells for augmenting the potency of cancer therapies 用于增强癌症疗法疗效的粘弹性合成抗原递呈细胞
IF 28.1 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-10-25 DOI: 10.1038/s41551-024-01272-w
Zeyang Liu, Yan-Ruide Li, Youcheng Yang, Yu Zhu, Weihao Yuan, Tyler Hoffman, Yifan Wu, Enbo Zhu, Jana Zarubova, Jun Shen, Haochen Nan, Kun-Wei Yeh, Mohammad Mahdi Hasani-Sadrabadi, Yichen Zhu, Ying Fang, Xinyang Ge, Zhizhong Li, Jennifer Soto, Tzung Hsiai, Lili Yang, Song Li

The use of synthetic antigen-presenting cells to activate and expand engineered T cells for the treatment of cancers typically results in therapies that are suboptimal in effectiveness and durability. Here we describe a high-throughput microfluidic system for the fabrication of synthetic cells mimicking the viscoelastic and T-cell-activation properties of antigen-presenting cells. Compared with rigid or elastic microspheres, the synthetic viscoelastic T-cell-activating cells (SynVACs) led to substantial enhancements in the expansion of human CD8+ T cells and to the suppression of the formation of regulatory T cells. Notably, activating and expanding chimaeric antigen receptor (CAR) T cells with SynVACs led to a CAR-transduction efficiency of approximately 90% and to substantial increases in T memory stem cells. The engineered CAR T cells eliminated tumour cells in a mouse model of human lymphoma, suppressed tumour growth in mice with human ovarian cancer xenografts, persisted for longer periods and reduced tumour-recurrence risk. Our findings underscore the crucial roles of viscoelasticity in T-cell engineering and highlight the utility of SynVACs in cancer therapy.

使用合成抗原递呈细胞激活和扩增工程 T 细胞来治疗癌症,通常会导致治疗效果和持久性不理想。在这里,我们描述了一种高通量微流体系统,用于制造模拟抗原递呈细胞粘弹性和 T 细胞激活特性的合成细胞。与刚性或弹性微球相比,合成粘弹性T细胞激活细胞(SynVACs)大大提高了人类CD8+ T细胞的扩增能力,并抑制了调节性T细胞的形成。值得注意的是,用SynVACs激活和扩增奇异抗原受体(CAR)T细胞,可使CAR转导效率达到约90%,并大幅增加T记忆干细胞。经改造的CAR T细胞能消灭人类淋巴瘤小鼠模型中的肿瘤细胞,抑制人类卵巢癌异种移植小鼠的肿瘤生长,延长肿瘤存活时间,降低肿瘤复发风险。我们的研究结果强调了粘弹性在T细胞工程中的关键作用,并突出了SynVACs在癌症治疗中的实用性。
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引用次数: 0
Rational and Semirational Approaches for Engineering Salicylate Production in Escherichia coli 大肠杆菌中水杨酸盐生产工程的理性和半理性方法
IF 3.7 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-10-25 DOI: 10.1021/acssynbio.4c0036610.1021/acssynbio.4c00366
Chenghu Chen, Cong Gao, Guipeng Hu, Wanqing Wei, Xiaoge Wang, Jian Wen, Xiulai Chen, Liming Liu, Wei Song and Jing Wu*, 

Salicylate plays a pivotal role as a pharmaceutical intermediate in drugs, such as aspirin and lamivudine. The low catalytic efficiency of key enzymes and the inherent toxicity of salicylates to cells pose significant challenges to large-scale microbial production. In this study, we introduced the salicylate synthase Irp9 into an l-phenylalanine-producing Escherichia coli, constructing the shortest salicylate biosynthetic pathway. Subsequent protein engineering increased the catalytic efficiency of Irp9 by 33.5%. Furthermore, by integrating adaptive evolution with transcriptome analysis, we elucidated the crucial mechanism of efflux proteins in salicylate tolerance. The elucidation of this mechanism guided us in the targeted modification of these transport proteins, achieving a reported maximum level of 3.72 g/L of salicylate in a shake flask. This study highlights the importance of efflux proteins for enhancing the productivity of microbial cell factories in salicylate production, which also holds potential for application in the green synthesis of other phenolic acids.

水杨酸盐是阿司匹林和拉米夫定等药物的重要中间体。关键酶的催化效率较低以及水杨酸盐对细胞的固有毒性给大规模微生物生产带来了巨大挑战。在这项研究中,我们将水杨酸合成酶 Irp9 引入到生产 l-苯丙氨酸的大肠杆菌中,构建了最短的水杨酸生物合成途径。随后的蛋白质工程将 Irp9 的催化效率提高了 33.5%。此外,通过将适应性进化与转录组分析相结合,我们阐明了水杨酸盐耐受性中外排蛋白的关键机制。在阐明这一机制的指导下,我们对这些转运蛋白进行了有针对性的改造,使其在摇瓶中达到了 3.72 克/升的最大水杨酸水平。这项研究强调了外排蛋白对提高水杨酸盐生产中微生物细胞工厂生产率的重要性,这也为其他酚酸的绿色合成提供了应用潜力。
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引用次数: 0
Underrecognized Association of Porto-Sinusoidal Vascular Disorder and Telomere Biology Disorders 未被充分认识的门静脉血管疾病与端粒生物学紊乱的关联
IF 25.7 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-10-24 DOI: 10.1016/j.jhep.2024.10.029
Puru Rattan, Kianna Nguyen, Daniel D. Penrice, Davide Povero, Douglas A. Simonetto

Section snippets

Authors' contributions:

P.R., K.N.: Writing - Original Draft, Data curation, Formal Analysis; D.D.P, D.P.: Data curation, Formal Analysis, Writing - Review & Editing; D.A.S.: Conceptualization, Methodology, Formal Analysis, Writing – Review and Editing, Supervision.

Financial support:

NoneThe recently published multicenter study of Porto-Sinusoidal Vascular Disorder (PSVD) patients by Magaz and Giudicelli-Lett et al thoroughly details the clinical findings and disease progression of PSVD.1 Given the rarity of PSVD yet improved prognosis with early recognition, the authors stress the importance of clinical awareness of associated conditions to expedite diagnosis. To this point, is it important to note that PSVD has also been observed in the setting of telomere biology

Declaration of Competing Interest:

DAS is funded by National Institute of Health U01AA026886–03. DAS has consulted for Mallinckrodt, Evive, Resolution Therapeutics, BioVie, AstraZeneca, Iota and PharmaIN.
章节片段作者贡献:P.R.、K.N.:写作 - 原稿、数据整理、正式分析;D.D.P、D.P:数据整理、形式分析、写作 - 审稿 & 编辑;D.A.S:Magaz和Giudicelli-Lett等人最近发表的关于门静脉窦状血管紊乱(PSVD)患者的多中心研究详细阐述了PSVD的临床发现和疾病进展。1 鉴于PSVD的罕见性,但早期识别可改善预后,作者强调临床认识相关疾病以加快诊断的重要性。竞争利益声明:DAS 由美国国立卫生研究院 U01AA026886-03 资助。DAS 曾为 Mallinckrodt、Evive、Resolution Therapeutics、BioVie、AstraZeneca、Iota 和 PharmaIN 提供咨询服务。
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引用次数: 0
Real-World Evidence Supporting the Consensus-Driven DILI Control Compounds List: An Analysis of FAERS Data 支持共识驱动的 DILI 控制化合物清单的现实世界证据:FAERS 数据分析
IF 25.7 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-10-24 DOI: 10.1016/j.jhep.2024.10.030
Wukun Ge, Weiqin Chen, Haiyan Xie

Section snippets

Authors' contributions:

WG, WC and HX conceived and designed the study. WG and WC collected and analyzed the data. HX provided clinical expertise and interpreted the results. WG drafted the manuscript. All authors critically revised the manuscript and approved the final version.

Data Availability Statement

This data can be accessed through the FDA's FAERS Public Dashboard athttps://fis.fda.gov/extensions/FPD-QDE-FAERS/FPD-QDE-FAERS.html.

Funding information

The study was supported by Quzhou City Science and Technology Research Project in 2023 (Grant No. 2023k193).

Declaration of Competing Interest

The authors disclose no conflicts.
章节片段作者贡献:WG、WC 和 HX 构思并设计了这项研究。WG 和 WC 收集并分析了数据。HX 提供临床专业知识并解释结果。WG 起草手稿。所有作者对手稿进行了严格的修改,并批准了最终版本。数据可用性声明该数据可通过FDA的FAERS公共仪表板访问:https://fis.fda.gov/extensions/FPD-QDE-FAERS/FPD-QDE-FAERS.html.Funding information该研究得到了衢州市2023年科技攻关项目(批准号:2023k193)的支持。利益冲突声明作者未披露任何利益冲突。
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引用次数: 0
Computational design of protein binders that boost the antitumour efficacy of CAR T cells 通过计算设计可提高 CAR T 细胞抗肿瘤功效的蛋白质结合剂
IF 28.1 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-10-24 DOI: 10.1038/s41551-024-01263-x
We computationally designed protein binders for chimeric antigen receptor (CAR) constructs to target the glioblastoma-associated antigens EGFR and CD276. Compared with standard CAR T cells, CAR T cells with the de novo-designed binders showed enhanced proliferation, cytokine release and resistance to exhaustion, as well as superior antitumour effects in vitro and in vivo.
我们通过计算设计了嵌合抗原受体(CAR)构建体的蛋白结合体,以靶向胶质母细胞瘤相关抗原表皮生长因子受体(EGFR)和CD276。与标准的CAR T细胞相比,带有全新设计的结合剂的CAR T细胞在体外和体内的增殖、细胞因子释放和抗衰竭能力都有所增强,抗肿瘤效果也更出色。
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引用次数: 0
Immunogenic amines on lipid nanoparticles 脂质纳米粒子上的免疫胺
IF 28.1 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-10-23 DOI: 10.1038/s41551-024-01265-9
Preeti Sharma, Dor Breier, Dan Peer
Amine headgroups in the ionizable lipids of lipid nanoparticles contribute to their immunogenicity.
脂质纳米粒子的可离子化脂质中的胺头基团会增加其免疫原性。
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引用次数: 0
Engineering Yarrowia lipolytica to Produce l-Malic Acid from Glycerol 利用脂肪分解酵母工程技术从甘油中生产 l-苹果酸
IF 3.7 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-10-23 DOI: 10.1021/acssynbio.4c0044510.1021/acssynbio.4c00445
Yaping Wang, Yuqing Han, Chang Liu, Liyan Cao, Qingqing Ye, Chen Ding, Yuyang Wang, Qingeng Huang, Jiwei Mao*, Cui-ying Zhang* and Aiqun Yu*, 

The declining availability of cheap fossil-based resources has sparked growing interest in the sustainable biosynthesis of organic acids. l-Malic acid, a crucial four-carbon dicarboxylic acid, finds extensive applications in the food, chemical, and pharmaceutical industries. Synthetic biology and metabolic engineering have enabled the efficient microbial production of l-malic acid, albeit not in Yarrowia lipolytica, an important industrial microorganism. The present study aimed to explore the potential of this fungal species for the production of l-malic acid. First, endogenous biosynthetic genes and heterologous transporter genes were overexpressed in Y. lipolytica to identify bottlenecks in the l-malic acid biosynthesis pathway grown on glycerol. Second, overexpression of isocitrate lyase, malate synthase, and malate dehydrogenase in the glyoxylate cycle pathway and introduction of a malate transporter from Schizosaccharomyces pombe significantly boosted l-malic acid production, which reached 27.0 g/L. A subsequent increase to 37.0 g/L was attained through shake flask medium optimization. Third, adaptive laboratory evolution allowed the engineered strain Po1g-CEE2+Sp to tolerate a lower pH and to accumulate a higher amount of l-malic acid (56.0 g/L). Finally, when scaling up to a 5 L bioreactor, a titer of 112.5 g/L was attained. In conclusion, this study demonstrates for the first time the successful production of l-malic acid in Y. lipolytica by combining metabolic engineering and laboratory evolution, paving the way for large-scale sustainable biosynthesis of this and other organic acids.

苹果酸是一种重要的四碳二羧酸,广泛应用于食品、化工和制药行业。合成生物学和代谢工程已经实现了 l-苹果酸的高效微生物生产,但在重要的工业微生物脂溶性亚罗威氏菌(Yarrowia lipolytica)中尚未实现。本研究旨在探索这种真菌生产 l-苹果酸的潜力。首先,在脂肪分解酵母中过表达内源生物合成基因和异源转运体基因,以确定在甘油上生长的 l-苹果酸生物合成途径的瓶颈。其次,过量表达乙醛酸循环途径中的异柠檬酸裂解酶、苹果酸合成酶和苹果酸脱氢酶,并从Schizosaccharomyces pombe引入苹果酸转运体,显著提高了l-苹果酸产量,使其达到27.0克/升。随后,通过摇瓶培养基优化,苹果酸产量提高到 37.0 克/升。第三,适应性实验室进化使工程菌株 Po1g-CEE2+Sp 能够耐受较低的 pH 值,并积累更多的苹果酸(56.0 克/升)。最后,当扩大到 5 升生物反应器时,滴度达到了 112.5 克/升。总之,本研究首次展示了通过结合代谢工程和实验室进化,在脂溶性酵母中成功生产出了苹果酸,为大规模可持续生物合成这种酸和其他有机酸铺平了道路。
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引用次数: 0
Transforming science labs into automated factories of discovery 将科学实验室改造成自动化发现工厂
IF 25 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-10-23 DOI: 10.1126/scirobotics.adm6991
Angelos Angelopoulos, James F. Cahoon, Ron Alterovitz
Laboratories in chemistry, biochemistry, and materials science are at the leading edge of technology, discovering molecules and materials to unlock capabilities in energy, catalysis, biotechnology, sustainability, electronics, and more. Yet, most modern laboratories resemble factories from generations past, with a large reliance on humans manually performing synthesis and characterization tasks. Robotics and automation can enable scientific experiments to be conducted faster, more safely, more accurately, and with greater reproducibility, allowing scientists to tackle large societal problems in domains such as health and energy on a shorter timescale. We define five levels of laboratory automation, from laboratory assistance to full automation. We also introduce robotics research challenges that arise when increasing levels of automation and when increasing the generality of tasks within the laboratory. Robots are poised to transform science labs into automated factories of discovery that accelerate scientific progress.
化学、生物化学和材料科学实验室处于技术的前沿,它们发现的分子和材料能够开启能源、催化、生物技术、可持续发展、电子等领域的能力。然而,大多数现代实验室与过去的工厂相似,主要依靠人类手动完成合成和表征任务。机器人技术和自动化可使科学实验更快、更安全、更准确地进行,并具有更高的可重复性,从而使科学家能够在更短的时间内解决健康和能源等领域的重大社会问题。我们定义了实验室自动化的五个级别,从实验室辅助到完全自动化。我们还介绍了在提高自动化水平和增加实验室内任务的通用性时出现的机器人研究挑战。机器人有望将科学实验室转变为加速科学进步的自动化发现工厂。
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引用次数: 0
New nomenclature for fatty liver disease: problems of localization in the regions and the position of Russian Scientific Liver Society 脂肪肝的新命名法:地区定位问题和俄罗斯肝脏科学学会的立场
IF 25.7 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-10-23 DOI: 10.1016/j.jhep.2024.10.023
Karina Raikhelson, Sergey Okovityi, Dzhamal Abdurakhmanov

Section snippets

Authors' contributions

Karina Raikhelson wrote the original draft, Sergey Okovityi, Dzhamal Abdurakhmanov reviewed and edited this Correspondence; All the authors approved the final manuscript.

Financial support

The authors received no financial support to produce this manuscript.

Declaration of Competing Interest

The authors declare no conflict of interest pertaining to this article.
作者的贡献Karina Raikhelson撰写了原稿,Sergey Okovityi、Dzhamal Abdurakhmanov审阅并编辑了本通讯;所有作者都批准了最终稿件。
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引用次数: 0
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