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2015 IEEE 4th Portuguese Meeting on Bioengineering (ENBENG)最新文献

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A light-guide optimization for proof-of-principle of a megavoltage orthogonal ray imaging prototype 一种用于巨压正交射线成像原型原理验证的光导优化
Pub Date : 2015-04-20 DOI: 10.1109/ENBENG.2015.7088818
H. Simões, P. Crespo
Radiotherapy (RT) is nowadays, after surgery, the most frequently used cancer treatment. Modern RT techniques provide increasingly higher conformality, a potential invaluable clinical benefit to the patient. Consequently, patient misalignments and changing internal anatomy (e.g. tissue swelling, edema, inflammation or tumor shrinkage/growth) are also becoming more critical since higher conformality may equally represent a higher risk of target underdosage or organ-at-risk overdosage. Therefore, state-of-the-art image-guided radiotherapy (IGRT) is the modern technique that aims at providing feedback to the radiation oncologist in regard to these matters, sometimes at the cost of increased dosage or treatment fraction time (e.g. kilo and megavoltage cone-beam computed tomography), other times providing insufficient clinical information. Our group is investigating a novel imaging system especially designed for assisting RT treatments. Such system, termed OrthoCT, consists in operating a dedicated X-ray detection system specially built for collecting selected patient-scattered radiation. Our team has shown by simulation [1, 2] and experiments [2, 3] that collecting such radiation allows for a rotation-free, 3D imaging of the inner morphology of the target (patient). The rotation-free and low dose 3D imaging capability of OrthoCT renders it very attractive due to its usefulness for so-called “on-board” patient imaging. A small-scale, bi-dimensional system is under construction for proof-of-principle validation. It consists of 4 crystals lines separated by collimator slices. Each crystal line is composed by 50 gadolinium oxyorthosilicate (GSO) crystals with a front-area of 4 × 4 mm2, forming a total line length of 200 mm. As light detector, a photomultiplier tube (PMT) will be used. Since the sensitive area of the PMT is 50 × 50 mm2, a light-guide to drive the light between the GSO crystals and the PMT is required. The aim of this work was the optimization, by means of Monte Carlo simulation, of the light-guide dimensions. The setup implemented into Geant4 is shown schematically in Figure 1, left. Such apparatus was tested for different theta angles (i.e. different light-guide length L). In Figure 1, right the count profiles obtained for different theta values are presented. The length L corresponding to θ = 7.5, 10, 12.5, and 15 degrees was 570, 425, 338, and 280 mm, respectively. Thus, smaller angles require larger light-guide lengths and, consequently, light losses in the path length are also higher. By analyzing the plots, the profile obtained for θ = 12.5 degrees shows a great compromise between the fraction of photons detected and the guide-light dimensions. For angles θ > 15 degrees the detection of the light coming from peripheric crystals is compromised. In concluding, the length of the guide-light must be approximately 340 mm.
放射治疗(RT)是当今继手术之后最常用的癌症治疗方法。现代放射治疗技术提供了越来越高的符合性,这对患者来说是一个潜在的宝贵的临床益处。因此,患者的错位和内部解剖结构的变化(如组织肿胀、水肿、炎症或肿瘤缩小/生长)也变得越来越重要,因为较高的一致性可能同样意味着更高的靶剂量不足或器官风险过量的风险。因此,最先进的图像引导放射治疗(IGRT)是一种现代技术,旨在向放射肿瘤学家提供有关这些问题的反馈,有时以增加剂量或治疗时间为代价(例如千兆伏和兆伏锥束计算机断层扫描),其他时候提供不足的临床信息。我们小组正在研究一种新的成像系统,专门用于辅助放射治疗。这种系统,称为OrthoCT,包括操作一个专用的x射线检测系统,专门用于收集选定的患者散射辐射。我们的团队通过模拟[1,2]和实验[2,3]表明,收集这种辐射可以对目标(患者)的内部形态进行无旋转的3D成像。OrthoCT的无旋转和低剂量3D成像能力使其非常有吸引力,因为它对所谓的“机载”患者成像有用。一个小规模的二维系统正在建设中,用于原理验证。它由4条由准直器切片分隔的晶体线组成。每条晶线由50个前面积为4 × 4 mm2的氧化硅酸钆(GSO)晶体组成,总长度为200 mm。光探测器采用光电倍增管(PMT)。由于PMT的敏感区域为50 × 50 mm2,因此需要一个光导来驱动GSO晶体和PMT之间的光。这项工作的目的是优化,通过蒙特卡罗模拟,光导尺寸。在Geant4中实现的设置如图1所示。该装置在不同的θ角(即不同的光导长度L)下进行了测试。如图1所示为不同θ值下获得的计数曲线。θ = 7.5°、10°、12.5°和15°对应的长度L分别为570、425、338和280 mm。因此,较小的角度需要较大的光导长度,因此,光损耗在路径长度也较高。通过对图的分析,在θ = 12.5度时得到的轮廓线显示了探测到的光子分数和导光尺寸之间的很大妥协。当角度θ > 15度时,对来自外围晶体的光的探测受到损害。总之,导光的长度必须约为340毫米。
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引用次数: 0
The osteointegration numerical prediction of a femur stem using a meshless approach 无网格法股骨骨整合数值预测
Pub Date : 2015-04-20 DOI: 10.1109/ENBENG.2015.7088882
J. Belinha, L. Dinis, R. Jorge
In this work the bone density distribution in the vicinity of femoral implants is predicted using a topology optimization model, based on deformation energy methods. The bone tissue is an efficient and optimized anisotropic biological material, capable of maximizing the structural stiffness by itself. In this work, the mechanical behaviour of the bone tissue is determined using a continuous anisotropic mathematical phenomenological law developed based on experimental data available in the literature. Thus, this law permits to correlate the bone density with the obtained level of stress. In order to obtain the displacement and stress fields a numerical meshless technique is used: the Natural Neighbour Radial Point Interpolator Method (NNRPIM). The NNRPIM presents various advantages in the topologic analysis comparing with other discrete numerical methods such as the Finite Element Method.
在这项工作中,使用基于变形能量方法的拓扑优化模型预测股骨植入物附近的骨密度分布。骨组织是一种高效、优化的各向异性生物材料,具有自身结构刚度最大化的能力。在这项工作中,骨组织的力学行为是使用基于文献中可用的实验数据开发的连续各向异性数学现象学定律来确定的。因此,该定律允许将骨密度与获得的压力水平联系起来。为了获得位移和应力场,采用了一种数值无网格技术:自然邻点径向插值法(NNRPIM)。与有限元等其他离散数值方法相比,NNRPIM在拓扑分析方面具有许多优点。
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引用次数: 2
A nucleoid segmentation method robust to varying nucleoid number 一种对变核数稳健的类核分割方法
Pub Date : 2015-04-20 DOI: 10.1109/ENBENG.2015.7088809
J. Santinha, Nadia S. M. Goncalves, A. Mora, A. Ribeiro, J. Fonseca
Summary form only given. Escherichia coli is an established model for the study of protein aggregation in vivo, a process that is related to its aging. These aggregates have a predisposition for locating at the cell poles, which, following cell division, results in asymmetric damage distribution by the two poles of the daughter cells. Such preference for polar localization is due the occlusion caused by the nucleoid at midcell. To study this process, it is necessary to correlate the spatial location of the protein aggregates and nucleoids during a cell life cycle. For this, and while neither structure has clear borders, it is necessary to perform their segmentation from fluorescence microscopy images. Here, we propose an adaptation of the method used in automatic Drusen detection in retinal images for detecting and segmenting DAPI-stained nucleoids at each stage of the cell cycle. We use the GPL algorithm to detect the number of nucleoids inside each cell. For the segmentation step, according to the number of nucleoids present in the cell, we use either one or two 3-dimensional, modified Gaussian functions as a point spread function model. By setting the amplitude profile parameter with a value equal to 10, the segmentation threshold is directly obtained from the value of z0. The method was applied to images of cells at different temperatures. Table 1 shows the extracted relative nucleoid major axis length for cells with one and with two nucleoids, in each temperature condition. From Table 1, the mean relative nucleoid major axis length decreases with increasing temperature for both cells with one and with two nucleoids, as expected by visual inspection of the images. Also, the positions of the borders of the nucleoid detected by our method, for cells with one nucleoid, are consistent with regions of anisotropies in aggregates motion reported in our previous studies. Additionally, the locations of the nucleoids for both cells with one and with two nucleoids are in agreement with the observed spatial distribution of the protein aggregates, which remain outside the nucleoid region according to our previous studies. These results demonstrate that the proposed method is able to differentiate between one and two nucleoids, perform their segmentation efficiently, and extract with precision the nucleoid(s) size along both the major and minor cell axis.
只提供摘要形式。大肠杆菌是研究体内蛋白质聚集的一种已建立的模型,这一过程与其衰老有关。这些聚集体倾向于位于细胞两极,这在细胞分裂后,导致子细胞两极的不对称损伤分布。这种对极性定位的偏好是由于中间细胞的类核引起的闭塞。为了研究这一过程,有必要在细胞生命周期中将蛋白质聚集体和类核的空间位置联系起来。为此,虽然这两种结构都没有明确的边界,但有必要从荧光显微镜图像中进行分割。在这里,我们提出了一种适用于视网膜图像中自动Drusen检测的方法,用于在细胞周期的每个阶段检测和分割dapi染色的类核。我们使用GPL算法来检测每个细胞内的类核数量。对于分割步骤,根据细胞中存在的类核数量,我们使用一个或两个三维修正高斯函数作为点扩散函数模型。通过将幅值剖面参数设为10,直接从z0的值得到分割阈值。该方法应用于不同温度下的细胞图像。表1显示了在每种温度条件下,具有一个和两个类核细胞的提取的相对类核长轴长度。从表1中可以看出,具有一个和两个类核的细胞的平均相对类核长轴长度随着温度的升高而减小,这是通过视觉检查图像所期望的。此外,我们的方法检测到的类核边界位置,对于具有一个类核的细胞,与我们以前研究中报道的聚集体运动的各向异性区域一致。此外,具有一个和两个类核的细胞的类核位置与观察到的蛋白质聚集体的空间分布一致,根据我们先前的研究,这些聚集体仍然在类核区域之外。这些结果表明,该方法能够区分一个和两个类核,有效地进行分割,并精确地提取沿细胞主轴和小轴的类核大小。
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引用次数: 0
Mechanical tests in all regions of the PIP breast implants PIP乳房植入物所有区域的力学测试
Pub Date : 2015-04-20 DOI: 10.1109/ENBENG.2015.7088836
N. Ramião, P. Martins, A. Fernandes, Maria da Luz Barroso, D. Santos
Silicone breast implants have been used for cosmetic and reconstructive breast surgery for several decades. Rupture and silicone leakage are well-known complications for silicone mammary implants. The public debate and awareness about the breast implants safety started because of the scandal associated with the Poly Implant Prostheses (PIP) manufacturer. In order to analyze rupture in these breast implants we carried out a mechanical study which included an evaluation of the mechanical shell properties, so that we can identify if the shell properties are uniform for the whole implant.
硅胶乳房植入物已经用于美容和乳房重建手术几十年了。破裂和硅漏是硅胶乳房植入物的常见并发症。公众对乳房植入物安全性的争论和认识是由于聚假体制造商(PIP)的丑闻而开始的。为了分析这些乳房植入物的破裂,我们进行了一项力学研究,其中包括对机械外壳性能的评估,以便我们能够确定整个植入物的外壳性能是否均匀。
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引用次数: 1
Relationship between area and moment of inertia with pubovisceral muscle displacement by biomechanical models 利用生物力学模型研究耻骨内脏肌位移与面积、转动惯量的关系
Pub Date : 2015-04-20 DOI: 10.1109/ENBENG.2015.7088845
T. Da Roza, R. Jorge, J. Duarte, S. Brandão, T. Mascarenhas, I. Ramos
Changes in the morphology of the pelvic floor muscles (PFM) or in their attachment points can cause functional weakness, especially when during effort. When there is the need to counteract the increase in intra-abdominal pressure, urinary leakage may occur, which may in turn be related to the reduction of Moment of Inertia (MOI). We aimed to test the relation between muscle morphology, MOI and muscle displacement during computational simulation of valsalva maneuver. For that purpose, axial MRI images from five athletes were acquired. Measures of muscle thickness and area were taken, and the MOI and cross-sectional area were calculated using segmentation splines from the Inventor® software. Additionally, biomechanical models were through numerical simulation of valsalva maneuver using the Abaqus® software. The results showed an association between MOI and muscle displacement (p=0.037; r=-0.900) and thickness (p=0.037; r=0.900). Muscle area showed no significative association with the displacement during valsalva maneuver.
骨盆底肌肉(PFM)形态或附着点的改变可导致功能无力,特别是在用力时。当需要抵消腹内压力的增加时,可能会发生尿漏,这可能与转动惯量(MOI)的减少有关。在valsalva动作的计算模拟中,我们旨在测试肌肉形态、MOI和肌肉位移之间的关系。为此,我们获得了5名运动员的轴向MRI图像。测量肌肉厚度和面积,并使用Inventor®软件的分割样条计算MOI和横截面积。此外,利用Abaqus®软件对valsalva动作进行数值模拟,建立生物力学模型。结果显示MOI与肌肉位移之间存在相关性(p=0.037;R =-0.900)和厚度(p=0.037;r = 0.900)。在valsalva动作中,肌肉面积与移位无显著相关性。
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引用次数: 0
PDMS encasing system for integrated lab-on-chip Ag/AgCl reference electrodes PDMS封装系统集成实验室片上银/AgCl参考电极
Pub Date : 2015-02-26 DOI: 10.1109/ENBENG.2015.7088871
T. S. Monteiro, S. Cardoso, L. Gonçalves, G. Minas
Poly(dimethylsiloxane) (PDMS) is an organosilicon polymer widely used in the fabrication of microfluidic systems to integrate biochips. In this study, we propose the use of an adapted PDMS mould for the creation of a miniaturized, reusable, reference electrode for in-chip electrochemical measurements. Through its integrated microfluidic system it is possible to replenish internal buffer solutions, unclog critical junctions and treat the electrode's surface, assuring a long term reuse of the same device. Planar Ag/AgCl reference electrodes were microfabricated over a passivated p-type Silicon Wafer. The PDMS mould, containing an integrated microfluidic system, was fabricated based on patterned SU-8 mould, which includes a lateral horizontal inlet access point. Surface oxidation was used for irreversible permanent bondage between flat surfaces. The final result was planar Ag/AgCl reference electrode with integrated microfluidic that allows for electrochemical analysis in biochips.
聚二甲基硅氧烷(PDMS)是一种有机硅聚合物,广泛用于制造集成生物芯片的微流控系统。在这项研究中,我们建议使用一个改进的PDMS模具来创建一个小型化的、可重复使用的、用于片内电化学测量的参考电极。通过其集成的微流体系统,可以补充内部缓冲溶液,疏通关键连接处并处理电极表面,确保长期重复使用同一设备。在钝化p型硅片上制备了平面Ag/AgCl参比电极。PDMS模具包含一个集成的微流体系统,是基于图图化SU-8模具制造的,其中包括一个横向水平入口接入点。表面氧化用于平面间的不可逆永久束缚。最终的结果是具有集成微流体的平面Ag/AgCl参比电极,允许在生物芯片中进行电化学分析。
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引用次数: 1
PDMS biofunctionalization study for the development of a microfluidic device: Application to salivary cortisol 微流控装置开发的PDMS生物功能化研究:唾液皮质醇的应用
Pub Date : 2015-02-26 DOI: 10.1109/ENBENG.2015.7088852
V. Pinto, G. Minas, M. Correia-Neves
This paper presents the study of the PDMS (poly(dimethylsiloxane)) surface functionalization for the development of a microfluidic immunosensor that quantitatively analyss salivary cortisol by optical detection. The functionalization was performed using different antibodies immobilization methods on PDMS surface: (a) immobilization by passive adsorption on pristine PDMS; (b) silanization of PDMS surface with (3-aminopropyl)-triethoxysilane (APTES) to generate amino groups and posterior covalent immobilization of antibodies on APTES-PDMS using cross-linker glutaraldehyde (GA); (c) coating the PDMS surface with BSA to block nonspecific protein adsorption, and then covalent bond of the protein A via GA. In this last approach, the antibodies were covalently immobilized to protein A due to its high affinity with the constant fraction (Fc) region of the antibodies. Atomic force microscope (AFM) and spectrophotometric analysis demonstrated that the immobilization method using protein A is more efficient since a higher roughness and uniformity on the PDMS surface and higher absorbance signals were obtained.
本文介绍了PDMS(聚二甲基硅氧烷)表面功能化的研究,以开发一种微流控免疫传感器,通过光学检测定量分析唾液皮质醇。采用不同的抗体固定方法在PDMS表面实现功能化:(a)被动吸附固定在原始PDMS上;(b)用(3-氨基丙基)-三乙氧基硅烷(APTES)对PDMS表面进行硅烷化生成氨基,并用交联剂戊二醛(GA)将抗体后共价固定在APTES-PDMS上;(c)在PDMS表面涂覆BSA,阻断非特异性蛋白吸附,再通过GA使蛋白A共价键。在最后一种方法中,抗体被共价固定在蛋白A上,因为它与抗体的恒定分数区(Fc)有很高的亲和力。原子力显微镜(AFM)和分光光度分析表明,蛋白A的固定化方法具有更高的效率,可以获得更高的表面粗糙度和均匀性,并获得更高的吸光度信号。
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引用次数: 3
Patterned CNT-PDMS nanocomposites for flexible pressure sensors 用于柔性压力传感器的图像化CNT-PDMS纳米复合材料
Pub Date : 2015-02-26 DOI: 10.1109/ENBENG.2015.7088850
P. Sousa, L. R. Silva, L. Gonçalves, G. Minas
This paper reports the fabrication process and characterization of a flexible pressure sensor based on polydimethylsiloxane (PDMS) and multi-walled carbon nanotubes (CNT-PDMS). The proposed approach relies on patterned CNT-PDMS nanocomposite strain gauges fabricated with SU-8 microstructures (with the micropatterns) in a low-cost and simple fabrication process. This nanocomposite polymer is mounted over a PDMS membrane, which, in turn, lies on top of a PDMS diaphragm like structure. This configuration enables the PDMS membrane to bend when pressure is applied, thereby affecting the nanocomposite strain gauges, effectively changing their electrical resistance. Carbon nanotubes have several advantages such as excellent mechanical properties, high electrical conductivity and thermal stability. Furthermore, the measurement range of the proposed sensor can be adapted according to the application by varying the CNTs content and geometry of microstructure. In addition, the sensor's biocompatibility, low cost and simple fabrication makes it very appealing for biomechanical strain sensing. The sensor's sensitivity was about 0.073%ΔR/mmHg.
本文报道了一种基于聚二甲基硅氧烷(PDMS)和多壁碳纳米管(CNT-PDMS)的柔性压力传感器的制备工艺和表征。所提出的方法依赖于用SU-8微结构(带有微图案)以低成本和简单的制造工艺制成的图像化CNT-PDMS纳米复合应变片。这种纳米复合聚合物被安装在PDMS膜上,而PDMS膜又位于PDMS隔膜状结构的顶部。这种结构使PDMS膜在施加压力时弯曲,从而影响纳米复合应变片,有效地改变其电阻。碳纳米管具有优异的机械性能、高导电性和热稳定性等优点。此外,该传感器的测量范围可以根据不同的应用,通过改变碳纳米管的含量和微观结构的几何形状来调整。此外,该传感器的生物相容性、低成本和简单的制造使其在生物力学应变传感中非常有吸引力。传感器的灵敏度约为0.073%ΔR/mmHg。
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引用次数: 4
A spectrophotometry based blood typing device 一种基于分光光度法的血型检测装置
Pub Date : 2015-02-26 DOI: 10.1109/ENBENG.2015.7088885
J. Fernandes, F. Soares, G. Minas
Blood typing is a crucial step before any blood transfusion. However, sometimes in emergency situations there is no time to determine the blood of the patient beforehand. In this cases, O negative blood type is administered, which has a lesser incompatibility risk to the patient. Nowadays, the “gold standard” blood typing devices cannot be used in emergency situations due to their high response time (about 30 minutes). This paper reports a blood typing device that determines the ABO and Rh human phenotypes. This device is fast (response time - 5 min), low-cost, and portable. Characteristics that make it suitable to be used in emergency situations, contributing to a higher efficiency and quality in healthcare.
血型是输血前至关重要的一步。然而,有时在紧急情况下,没有时间事先确定病人的血液。在这种情况下,给予O阴性血型,这对患者有较小的不相容风险。如今,由于反应时间较长(约30分钟),“黄金标准”血型装置不能用于紧急情况。本文报道了一种确定ABO和Rh人类表型的分型装置。该设备速度快(响应时间- 5分钟),成本低,便携。使其适合在紧急情况下使用的特性,有助于提高医疗保健的效率和质量。
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引用次数: 1
Image-derived input function for brain PET quantification 用于脑PET量化的图像衍生输入函数
Pub Date : 2015-02-01 DOI: 10.1109/ENBENG.2015.7088867
Andre Gorgulho, F. Caramelo, M. Patrício
Quantification of positron emission tomography (PET) images using compartmental models requires the estimation of the tracer concentration in plasma as a function of time. Estimating this function directly from PET images, by measuring the tracer concentration on the carotid arteries, is an attractive alternative to the invasive gold-standard method of arterial cannulation of the radial artery. Nevertheless, most image-derived input function methods still rely on extracting a small number of blood samples to correct for partial volume effects, metabolites and plasma fraction (blood-based). In this work, we assess two non-invasive image-derived input function techniques (blood-free). The two blood-free methods were first applied to a computational phantom and compared with a well established blood-based method. Using image-derived input functions, parametric maps of the binding potential were obtained for [11C]-Raclopride PET images from ongoing studies. These were in turn compared to maps that had been obtained using a reference-region based quantification approach. Although good quantification estimates were found for some subjects, it was hard to guarantee consistency. The biggest obstacle seems to be an underestimation of the spill-out effects, which can be minimized using a small number of venous blood samples.
定量正电子发射断层扫描(PET)图像使用室室模型需要估计在等离子体中的示踪剂浓度作为时间的函数。通过测量颈动脉上的示踪剂浓度,直接从PET图像中估计这一功能,是一种有吸引力的替代桡动脉动脉插管的侵入性金标准方法。然而,大多数图像衍生输入函数方法仍然依赖于提取少量血液样本来校正部分体积效应、代谢物和血浆分数(基于血液)。在这项工作中,我们评估了两种非侵入性图像衍生输入函数技术(无血)。这两种无血方法首先应用于计算幻影,并与一种成熟的基于血液的方法进行了比较。使用图像衍生的输入函数,从正在进行的研究中获得[11C]-Raclopride PET图像的结合电位参数图。然后将这些结果与使用基于参考区域的量化方法获得的地图进行比较。虽然在一些研究对象中发现了良好的量化估计,但很难保证一致性。最大的障碍似乎是对溢出效应的低估,这可以通过使用少量静脉血样本来最小化。
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引用次数: 1
期刊
2015 IEEE 4th Portuguese Meeting on Bioengineering (ENBENG)
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