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In-Flow Heterogeneous Triplet–Triplet Annihilation Upconversion 内流异质三重-三重湮没上转换
Q2 CHEMISTRY, PHYSICAL Pub Date : 2024-03-12 DOI: 10.1021/acsphyschemau.3c00062
Jorge Castellanos-Soriano, Francisco Garnes-Portolés, M. Consuelo Jiménez, Antonio Leyva-Pérez* and Raúl Pérez-Ruiz*, 

Photon upconversion based on triplet–triplet annihilation (TTA-UC) is an attractive wavelength conversion with increasing use in organic synthesis in the homogeneous phase; however, this technology has not performed with canonical solid catalysts yet. Herein, a BOPHY dye covalently anchored on silica is successfully used as a sensitizer in a TTA system that efficiently catalyzes Mizoroki–Heck coupling reactions. This procedure has enabled the implementation of in-flow reaction conditions for the synthesis of a variety of aromatic compounds, and mechanistic proof has been obtained by means of transient absorption spectroscopy.

基于三重-三重湮灭的光子上转换(TTA-UC)是一种极具吸引力的波长转换技术,在均相有机合成中的应用日益广泛。在这里,一种共价锚定在二氧化硅上的 BOPHY 染料被成功地用作 TTA 系统中的敏化剂,从而高效地催化了 Mizoroki-Heck 偶联反应。这一过程实现了在流动反应条件下合成多种芳香族化合物,并通过瞬态吸收光谱获得了机理证明。
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引用次数: 0
Unraveling the Stability of Layered Intercalation Compounds through First-Principles Calculations: Establishing a Linear Free Energy Relationship with Aqueous Ions 通过第一性原理计算揭示层状互锁化合物的稳定性:建立与水离子的线性自由能关系
Q2 CHEMISTRY, PHYSICAL Pub Date : 2024-03-07 DOI: 10.1021/acsphyschemau.3c00063
Naoto Kawaguchi*, Kiyou Shibata and Teruyasu Mizoguchi*, 

Layered intercalation compounds, where atoms or molecules (intercalants) are inserted into layered materials (hosts), hold great potential for diverse applications. However, the lack of a systematic understanding of stable host–intercalant combinations poses challenges in materials design due to the vast combinatorial space. In this study, we performed first-principles calculations on 9024 compounds, unveiling a novel linear regression equation based on the principle of hard and soft acids and bases. This equation, incorporating the intercalant ion formation energy and ionic radius, quantitatively reveals the stability factors. Additionally, employing machine learning, we predicted regression coefficients from host properties, offering a comprehensive understanding and a predictive model for estimating the intercalation energy. Our work provides valuable insights into the energetics of layered intercalation compounds, facilitating targeted materials design.

层状插层化合物是将原子或分子(插层物)插入层状材料(宿主)中的化合物,在各种应用领域具有巨大的潜力。然而,由于缺乏对稳定的宿主-插层剂组合的系统了解,巨大的组合空间给材料设计带来了挑战。在本研究中,我们对 9024 种化合物进行了第一性原理计算,揭示了基于软硬酸碱原理的新型线性回归方程。该方程结合了夹杂离子形成能和离子半径,定量揭示了稳定性因素。此外,通过机器学习,我们还根据宿主特性预测了回归系数,为估算插层能量提供了全面的理解和预测模型。我们的工作为层状插层化合物的能量学提供了宝贵的见解,有助于进行有针对性的材料设计。
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引用次数: 0
A Vision for the Future of Multiscale Modeling 多尺度建模的未来愿景
Q2 CHEMISTRY, PHYSICAL Pub Date : 2024-03-04 DOI: 10.1021/acsphyschemau.3c00080
Matteo Capone, Marco Romanelli, Davide Castaldo, Giovanni Parolin, Alessandro Bello, Gabriel Gil and Mirko Vanzan*, 

The rise of modern computer science enabled physical chemistry to make enormous progresses in understanding and harnessing natural and artificial phenomena. Nevertheless, despite the advances achieved over past decades, computational resources are still insufficient to thoroughly simulate extended systems from first principles. Indeed, countless biological, catalytic and photophysical processes require ab initio treatments to be properly described, but the breadth of length and time scales involved makes it practically unfeasible. A way to address these issues is to couple theories and algorithms working at different scales by dividing the system into domains treated at different levels of approximation, ranging from quantum mechanics to classical molecular dynamics, even including continuum electrodynamics. This approach is known as multiscale modeling and its use over the past 60 years has led to remarkable results. Considering the rapid advances in theory, algorithm design, and computing power, we believe multiscale modeling will massively grow into a dominant research methodology in the forthcoming years. Hereby we describe the main approaches developed within its realm, highlighting their achievements and current drawbacks, eventually proposing a plausible direction for future developments considering also the emergence of new computational techniques such as machine learning and quantum computing. We then discuss how advanced multiscale modeling methods could be exploited to address critical scientific challenges, focusing on the simulation of complex light-harvesting processes, such as natural photosynthesis. While doing so, we suggest a cutting-edge computational paradigm consisting in performing simultaneous multiscale calculations on a system allowing the various domains, treated with appropriate accuracy, to move and extend while they properly interact with each other. Although this vision is very ambitious, we believe the quick development of computer science will lead to both massive improvements and widespread use of these techniques, resulting in enormous progresses in physical chemistry and, eventually, in our society.

现代计算机科学的兴起使物理化学在理解和利用自然与人工现象方面取得了巨大进步。然而,尽管过去几十年来取得了巨大进步,计算资源仍然不足以从第一原理出发对扩展系统进行彻底模拟。事实上,无数的生物、催化和光物理过程都需要进行ab initio处理才能得到正确的描述,但由于所涉及的长度和时间尺度范围很广,这实际上是不可行的。解决这些问题的方法是将不同尺度的理论和算法结合起来,将系统划分为不同近似程度的领域,从量子力学到经典分子动力学,甚至包括连续电动力学。这种方法被称为多尺度建模,在过去 60 年的应用中取得了显著的成果。考虑到理论、算法设计和计算能力的飞速发展,我们相信多尺度建模将在未来几年内迅速成长为一种主流研究方法。在此,我们将介绍在多尺度建模领域开发的主要方法,强调这些方法的成就和目前存在的缺陷,并最终提出未来发展的合理方向,同时考虑到机器学习和量子计算等新计算技术的出现。然后,我们讨论了如何利用先进的多尺度建模方法来应对关键的科学挑战,重点是模拟复杂的采光过程,如自然光合作用。在此过程中,我们提出了一种前沿的计算范式,即在一个系统上同时进行多尺度计算,允许以适当精度处理的各种域移动和扩展,同时它们之间适当地相互作用。尽管这一愿景雄心勃勃,但我们相信,计算机科学的快速发展将带来这些技术的巨大进步和广泛应用,从而推动物理化学的巨大进步,并最终推动我们社会的巨大进步。
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引用次数: 0
Accurate Enthalpies of Formation for PFAS from First-Principles: Combining Different Levels of Theory in a Generalized Thermochemical Hierarchy 从第一原理得出全氟辛烷磺酸的精确形成焓:在广义热化学层次中结合不同层次的理论
Q2 CHEMISTRY, PHYSICAL Pub Date : 2024-02-27 DOI: 10.1021/acsphyschemau.3c00056
Kento Abeywardane,  and , C. Franklin Goldsmith*, 

The enthalpies of formation are computed for a large number of per- and poly fluoroalkyl substances (PFAS) using a connectivity-based hierarchy (CBH) approach. A combination of different electronic structure methods are used to provide the reference data in a hierarchical manner. The ANL0 method, in conjunction with the active thermochemical tables, provides enthalpies of formation for smaller species with subchemical accuracy. Coupled-cluster theory with explicit correlations are used to compute enthalpies of formation for intermediate species, based upon the ANL0 results. For the largest PFAS, including perfluorooctanoic acid (PFOA) and heptafluoropropylene oxide dimer acid (GenX), coupled-cluster theory with local correlations is used. The sequence of homodesmotic reactions proposed by the CBH are determined automatically by a new open-source code, AutoCBH. The results are the first reported enthalpies of formation for the majority of the species. A convergence analysis and global uncertainty quantification confirm that the enthalpies of formation at 0 K should be accurate to within ±5 kJ/mol. This new approach is not limited to PFAS, but can be applied to many chemical systems.

采用基于连通性的层次结构(CBH)方法计算了大量全氟和多氟烷基物质(PFAS)的形成焓。该方法结合了不同的电子结构方法,以分层的方式提供参考数据。ANL0 方法与活性热化学表相结合,以亚化学精度提供了较小物种的形成焓。根据 ANL0 的结果,使用具有明确相关性的耦合簇理论来计算中间物种的形成焓。对于最大的 PFAS,包括全氟辛酸(PFOA)和七氟环氧丙烷二聚酸(GenX),则使用了具有局部相关性的耦合簇理论。CBH 提出的同位反应序列由新的开源代码 AutoCBH 自动确定。其结果是首次报告的大多数物种的形成焓。收敛分析和全局不确定性量化证实,0 K 时的生成焓应精确到 ±5 kJ/mol 以内。这种新方法不仅限于全氟辛烷磺酸,还可应用于许多化学体系。
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引用次数: 0
Quantum Molecular Devices 量子分子设备
Q2 CHEMISTRY, PHYSICAL Pub Date : 2024-02-26 DOI: 10.1021/acsphyschemau.3c00077
Ronnie Kosloff*, 

Miniaturization has been the driving force in contemporary technologies. However, two main obstacles limit further progress: additional reduction in size has reached its quantum limit, and lithography has reached its threshold. Future progress requires tackling three challenges: chemical synthesis of a complete device, active cooling for exploiting quantum characteristics, and quantum coherent control for operation. Chemical synthesis replaces the current top-bottom approach to manufacturing with bottom-up synthesis from elementary building blocks. New ultracold synthetic methods should be developed. An additional challenge is the active cooling of molecules, where the bottleneck is entropy removal. Notably, the current solution, namely, diffusion, is too slow. A coherent approach offers a possible solution; specifically, quantum coherent control is the method of choice for manipulating ultracold matter. Finally, the many degrees of freedom of molecules should be an asset that allows the design and implementation of complex tasks such as sensing communication and computing.

微型化一直是当代技术的驱动力。然而,两个主要障碍限制了进一步的进展:尺寸的进一步缩小已达到量子极限,光刻技术也已达到临界点。未来的进步需要应对三个挑战:完整器件的化学合成、利用量子特性的主动冷却以及操作的量子相干控制。化学合成将目前自上而下的制造方法改为自下而上的基本构件合成。应开发新的超冷合成方法。另一个挑战是分子的主动冷却,其瓶颈在于熵的去除。值得注意的是,目前的解决方案(即扩散)速度太慢。相干方法提供了一种可能的解决方案;具体来说,量子相干控制是操纵超冷物质的首选方法。最后,分子的许多自由度应该是一种资产,可以设计和执行复杂的任务,如传感通信和计算。
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引用次数: 0
Raman Spectroscopic Insights of Phase-Separated Insulin Aggregates 相分离胰岛素聚集体的拉曼光谱观察
Q2 CHEMISTRY, PHYSICAL Pub Date : 2024-02-15 DOI: 10.1021/acsphyschemau.3c00065
Sandip Dolui, Anupam Roy, Uttam Pal, Shubham Kundu, Esha Pandit, Bhisma N Ratha, Ranit Pariary, Achintya Saha, Anirban Bhunia and Nakul C. Maiti*, 

Phase-separated protein accumulation through the formation of several aggregate species is linked to the pathology of several human disorders and diseases. Our current investigation envisaged detailed Raman signature and structural intricacy of bovine insulin in its various forms of aggregates produced in situ at an elevated temperature (60 °C). The amide I band in the Raman spectrum of the protein in its native-like conformation appeared at 1655 cm–1 and indicated the presence of a high content of α-helical structure as prepared freshly in acidic pH. The disorder content (turn and coils) also was predominately present in both the monomeric and oligomeric states and was confirmed by the presence shoulder amide I maker band at ∼1680 cm–1. However, the band shifted to ∼1671 cm–1 upon the transformation of the protein solution into fibrillar aggregates as produced for a longer time of incubation. The protein, however, maintained most of its helical conformation in the oligomeric phase; the low-frequency backbone α-helical conformation signal at ∼935 cm–1 was similar to that of freshly prepared aqueous protein solution enriched in helical conformation. The peak intensity was significantly weak in the fibrillar aggregates, and it appeared as a good Raman signature to follow the phase separation and the aggregation behavior of insulin and similar other proteins. Tyrosine phenoxy moieties in the protein may maintained its H-bond donor–acceptor integrity throughout the course of fibril formation; however, it entered in more hydrophobic environment in its journey of fibril formation. In addition, it was noticed that oligomeric bovine insulin maintained the orientation/conformation of the disulfide bonds. However, in the fibrillar state, the disulfide linkages became more strained and preferred to maintain a single conformation state.

通过形成多种聚合体而造成的相分离蛋白质积累与多种人类疾病的病理有关。我们目前的研究设想了牛胰岛素在高温(60 °C)下原位生成的各种形式聚集体的详细拉曼特征和结构的复杂性。拉曼光谱中的酰胺 I 带出现在 1655 cm-1 处,表明在酸性 pH 条件下新鲜制备的胰岛素具有高含量的 α-螺旋结构。在单体和低聚物状态下,无序结构(转折和线圈)也主要存在,并通过在 ∼1680 cm-1 处出现肩酰胺 I maker 带得到证实。然而,当蛋白质溶液转变为纤维状聚集体并经过较长时间的培养后,该条带转移到了 1671 cm-1 处。然而,蛋白质在低聚物阶段保持了大部分的螺旋构象;在 ∼935 cm-1 处的低频骨架α-螺旋构象信号与新鲜制备的富含螺旋构象的蛋白质水溶液相似。该峰强度在纤维状聚集体中明显较弱,是跟踪胰岛素和其他类似蛋白质相分离和聚集行为的良好拉曼信号。蛋白质中的酪氨酸苯氧基可能在整个纤维形成过程中保持了其氢键供体-受体的完整性,但在纤维形成过程中进入了更疏水的环境。此外,研究还发现,低聚牛胰岛素保持了二硫键的取向/构象。然而,在纤维状状态下,二硫键变得更加紧张,更倾向于保持单一构象状态。
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引用次数: 0
Physical Chemistry Models for Chemical Research in the XXth and XXIst Centuries 二十世纪和二十一世纪化学研究的物理化学模型
Q2 CHEMISTRY, PHYSICAL Pub Date : 2024-02-09 DOI: 10.1021/acsphyschemau.3c00057
Josep M. Ribó*,  and , David Hochberg*, 

Thermodynamic hypotheses and models are the touchstone for chemical results, but the actual models based on time-invariance, which have performed efficiently in the development of chemistry, are nowadays invalid for the interpretation of the behavior of complex systems exhibiting nonlinear kinetics and with matter and energy exchange flows with the surroundings. Such fields of research will necessarily foment and drive the use of thermodynamic models based on the description of irreversibility at the macroscopic level, instead of the current models which are strongly anchored in microreversibility.

热力学假设和模型是化学结果的试金石,但基于时间不变性的实际模型在化学发展过程中发挥了有效作用,如今却无法解释表现出非线性动力学以及与周围环境进行物质和能量交换流的复杂系统的行为。这些领域的研究必然会促进和推动基于宏观不可逆性描述的热力学模型的使用,而不是目前那些严重依赖于微观可逆性的模型。
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引用次数: 0
A Vision for Physical Chemistry: An Inclusive Future for all Abilities 物理化学的愿景:包容所有能力的未来
Q2 CHEMISTRY, PHYSICAL Pub Date : 2024-02-06 DOI: 10.1021/acsphyschemau.3c00069
Juliana I. Bonilla-Lugo*,  and , Sarah E. Wolf*, 
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引用次数: 0
Bottom-Up Atomistic Descriptions of Top-Down Macroscopic Measurements: Computational Benchmarks for Hammett Electronic Parameters 自上而下宏观测量的自下而上原子论描述:哈米特电子参数的计算基准
Q2 CHEMISTRY, PHYSICAL Pub Date : 2024-02-06 DOI: 10.1021/acsphyschemau.3c00045
Guilian Luchini,  and , Robert S. Paton*, 

The ability to relate substituent electronic effects to chemical reactivity is a cornerstone of physical organic chemistry and Linear Free Energy Relationships. The computation of electronic parameters is increasingly attractive since they can be obtained rapidly for structures and substituents without available experimental data and can be applied beyond aromatic substituents, for example, in studies of transition metal complexes and aliphatic and radical systems. Nevertheless, the description of “top-down” macroscopic observables, such as Hammett parameters using a “bottom-up” computational approach, poses several challenges for the practitioner. We have examined and benchmarked the performance of various computational charge schemes encompassing quantum mechanical methods that partition charge density, methods that fit charge to physical observables, and methods enhanced by semiempirical adjustments alongside NMR values. We study the locations of the atoms used to obtain these descriptors and their correlation with empirical Hammett parameters and rate differences resulting from electronic effects. These seemingly small choices have a much more significant impact than previously imagined, which outweighs the level of theory or basis set used. We observe a wide range of performance across the different computational protocols and observe stark and surprising differences in the ability of computational parameters to capture para- vs meta-electronic effects. In general, σm predictions fare much worse than σp. As a result, the choice of where to compute these descriptors─for the ring carbons or the attached H or other substituent atoms─affects their ability to capture experimental electronic differences. Density-based schemes, such as Hirshfeld charges, are more stable toward unphysical charge perturbations that result from nearby functional groups and outperform all other computational descriptors, including several commonly used basis set based schemes such as Natural Population Analysis. Using attached atoms also improves the statistical correlations. We obtained general linear relationships for the global prediction of experimental Hammett parameters from computed descriptors for use in statistical modeling studies.

将取代基的电子效应与化学反应性联系起来的能力是物理有机化学和线性自由能关系的基石。电子参数的计算越来越具有吸引力,因为它们可以在没有可用实验数据的情况下快速获得结构和取代基的参数,并且可以应用于芳香取代基以外的领域,例如过渡金属配合物以及脂肪族和自由基体系的研究。然而,使用 "自下而上 "的计算方法描述 "自上而下 "的宏观观测指标(如哈梅特参数),给实践者带来了一些挑战。我们对各种计算电荷方案的性能进行了研究和基准测试,其中包括分割电荷密度的量子力学方法、将电荷与物理观测值相匹配的方法,以及通过对 NMR 值进行半经验调整而增强的方法。我们研究了用于获取这些描述符的原子位置及其与经验哈米特参数和电子效应导致的速率差异的相关性。这些看似微小的选择所产生的影响远比以前想象的要大得多,甚至超过了所使用的理论或基础集的水平。我们观察到不同计算协议的性能差异很大,并观察到计算参数在捕捉副电子效应与元电子效应的能力上存在明显而令人惊讶的差异。一般来说,σm 的预测结果比 σp 差得多。因此,选择在何处计算这些描述符--环碳或相连的 H 原子或其他取代原子--会影响其捕捉实验电子差异的能力。基于密度的方案(如 Hirshfeld 电荷)对附近官能团产生的非物理电荷扰动更加稳定,性能优于所有其他计算描述符,包括几种常用的基于基集的方案(如自然群体分析)。使用附着原子还能改善统计相关性。我们从计算描述符中获得了全局预测实验哈梅特参数的一般线性关系,可用于统计建模研究。
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引用次数: 0
My Vision of Electric-Field-Aided Chemistry in 2050 我对 2050 年电场辅助化学的展望
Q2 CHEMISTRY, PHYSICAL Pub Date : 2024-02-01 DOI: 10.1021/acsphyschemau.3c00064
Sason Shaik*, 

This manuscript outlines my outlook on the development of electric-field (EF)-mediated-chemistry and the vision of its state by 2050. I discuss applications of oriented-external electric-fields (OEEFs) on chemical reactions and proceed with relevant experimental verifications. Subsequently, the Perspective outlines other ways of generating EFs, e.g., by use of pH-switchable charges, ionic additives, water droplets, and so on. A special section summarizes conceptual principles for understanding and predicting OEEF effects, e.g., the “reaction-axis rule”, the capability of OEEFs to act as tweezers that orient reactants and accelerate their reaction, etc. Finally, I discuss applications of OEEFs in continuous-flow setups, which may, in principle, scale-up to molar concentrations. The Perspective ends with the vision that by 2050, OEEF usage will change chemical education, if not also the art of making new molecules.

这篇手稿概述了我对电场(EF)介导化学的发展前景以及到 2050 年的发展愿景。我讨论了定向外部电场(OEEFs)在化学反应中的应用,并进行了相关的实验验证。随后,"视角 "概述了产生外电场的其他方法,如使用 pH 值可切换电荷、离子添加剂、水滴等。还有一个特别章节总结了理解和预测 OEEF 效应的概念原理,如 "反应轴规则"、OEEFs 作为镊子定向反应物并加速其反应的能力等。最后,我讨论了 OEEFs 在连续流装置中的应用,原则上,这种装置可以放大到摩尔浓度。展望》最后提出了一个愿景:到2050年,OEEF的应用将改变化学教育,甚至改变制造新分子的艺术。
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引用次数: 0
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