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Supportness of the protein complex standards in PPI networks PPI网络中蛋白质复合物标准的支持性
IF 2.7 Q2 COMPUTER SCIENCE, INFORMATION SYSTEMS Pub Date : 2021-10-27 DOI: 10.1080/24751839.2021.1989241
Milana Grbić, Vukasin Crnogorac, M. Predojević, Aleksandar Kartelj, Dragan Matic
ABSTRACT A protein complex is a collection of two or more associated proteins that interact with each other in a stable long-term interaction. Protein complexes have essential roles in regulatory processes, cellular functions and signaling cascades. This paper examines how well-known collections of protein complexes are supported in protein–protein interaction (PPI) networks, i.e. whether they form connected subnetworks in a particular PPI network. For that purpose, we apply a variable neighbourhood search (VNS) metaheuristic algorithm for adding the minimum number of interactions in order to support protein complexes. Experimental results obtained on several PPI networks (BioGRID, WI-PHI and String) and four protein complex standards (MIPS, TAP06, SGD and CYC2008) show that considered networks do not include enough PPIs to support all complexes from complex standards. Deeper analysis indicates that there exists common PPIs which are probably missing in the considered networks. These findings can be useful for further biological interpretation and developing of PPI prediction models.
摘要蛋白质复合体是两种或两种以上相关蛋白质的集合,它们在稳定的长期相互作用中相互作用。蛋白质复合物在调节过程、细胞功能和信号级联中具有重要作用。本文研究了众所周知的蛋白质复合物集合是如何在蛋白质-蛋白质相互作用(PPI)网络中得到支持的,即它们是否在特定的PPI网络中形成连接的子网络。为此,我们应用可变邻域搜索(VNS)元启发式算法来添加最小数量的相互作用,以支持蛋白质复合物。在几种PPI网络(BioGRID、WI-PHI和String)和四种蛋白质复合物标准(MIPS、TAP06、SGD和CYC2008)上获得的实验结果表明,所考虑的网络不包括足够的PPI来支持来自复合物标准的所有复合物。更深入的分析表明,存在常见的PPI,这些PPI可能在所考虑的网络中缺失。这些发现可用于进一步的生物学解释和PPI预测模型的开发。
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引用次数: 0
An enhanced evolutionary approach for solving the community detection problem 一种用于解决社区检测问题的增强进化方法
IF 2.7 Q2 COMPUTER SCIENCE, INFORMATION SYSTEMS Pub Date : 2021-10-17 DOI: 10.1080/24751839.2021.1987076
Salmi Cheikh, Bouchema Sara, Zaoui Sara
ABSTRACT Community detection concepts can be encountered in many disciplines such as sociology, biology, and computer science, etc. Nowadays, a huge amount of data is produced by digital social networks and needs to be processed. In fact, the analysis of this data makes it possible to extract new knowledge about groups of individuals, their communication modes, and orientations. This knowledge can be exploited in marketing, security, Web usage, and many other decisional purposes. Community detection problem (CDP) is NP-hard and many algorithms have been designed to solve it but not to a satisfactory level. In this paper, we propose a hybrid heuristic approach based on a combination of genetic algorithms and tabu search that does not need any prior knowledge about the number or the size of each community to tackle the CDP. The method is efficient because it uses an enhanced encoding, which excludes redundant chromosomes while performing genetic operations. This approach is evaluated on a wide range of real-world networks. The result of experiments shows that the proposed algorithm outperforms many other algorithms according to the modularity measure.
摘要社区检测的概念在社会学、生物学和计算机科学等许多学科中都可以遇到。如今,数字社交网络产生了大量的数据,需要进行处理。事实上,通过对这些数据的分析,可以提取关于个人群体、他们的沟通模式和取向的新知识。这些知识可以用于营销、安全、网络使用和许多其他决策目的。社区检测问题(CDP)是一个NP难问题,已经设计了许多算法来解决它,但并没有达到令人满意的水平。在本文中,我们提出了一种基于遗传算法和禁忌搜索相结合的混合启发式方法,该方法不需要任何关于每个社区的数量或大小的先验知识来解决CDP。这种方法是有效的,因为它使用了增强的编码,在进行遗传操作时排除了多余的染色体。这种方法在广泛的现实世界网络上进行了评估。实验结果表明,该算法在模块性度量方面优于其他算法。
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引用次数: 0
Gender and region detection from human voice using the three-layer feature extraction method with 1D CNN 基于1D CNN的三层特征提取方法在人声性别和区域检测中的应用
IF 2.7 Q2 COMPUTER SCIENCE, INFORMATION SYSTEMS Pub Date : 2021-10-10 DOI: 10.1080/24751839.2021.1983318
Mohammad Amaz Uddin, Refat Khan Pathan, Md Sayem Hossain, Munmun Biswas
ABSTRACT Analysing the human voice has always been a challenge to the engineering society for various purposes such as product review, emotional state detection, developing AI, and much more. Two basic grounds of voice or speech analysis are to detect human gender and the geographical region based on accent. This study presents a three-layer feature extraction method from the raw human voice to detect the gender as male or female, as well as the region from where that voice belongs. Fundamental frequency, spectral entropy, spectral flatness, and mode frequency have been calculated in the first layer of feature extraction. On the other hand, Mel Frequency Cepstral Coefficient has been used to extract the features in the second layer and linear predictive coding in the third layer. Regular voice contains some noises which have been removed with multiple audio data filtering processes to get noise-free smooth data. Multi-Output-based 1D Convolutional Neural Network has been used to recognize gender and region from a combined dataset which consists of TIMIT, RAVDESS, and BGC datasets. The model has successfully predicted the gender with 93.01% and region with 97.07% accuracy. This method works better than usual state-of-the-art methods in separate datasets along with the combined dataset on both gender and region classification.
摘要分析人声一直是工程社会面临的挑战,用于各种目的,如产品审查、情绪状态检测、开发人工智能等。语音分析的两个基本依据是检测人类性别和基于口音的地理区域。本研究提出了一种从原始人声中提取三层特征的方法,以检测男性或女性的性别,以及该语音所属的区域。在第一层特征提取中计算了基频、谱熵、谱平坦度和模式频率。另一方面,在第二层中使用梅尔频率倒谱系数来提取特征,在第三层中使用线性预测编码。常规语音中包含一些噪声,这些噪声已通过多次音频数据过滤过程去除,以获得无噪声的平滑数据。基于多输出的1D卷积神经网络已被用于从由TIMIT、RAVDESS和BGC数据集组成的组合数据集中识别性别和区域。该模型成功地预测了性别,准确率为93.01%,地区预测准确率为97.07%。这种方法在单独的数据集以及在性别和区域分类方面的组合数据集中比通常的最先进的方法效果更好。
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引用次数: 6
New convolutional neural network models for efficient object recognition with humanoid robots 基于卷积神经网络的人形机器人高效目标识别新模型
IF 2.7 Q2 COMPUTER SCIENCE, INFORMATION SYSTEMS Pub Date : 2021-10-06 DOI: 10.1080/24751839.2021.1983331
Simge Nur Aslan, A. Uçar, C. Güzelı̇ş
ABSTRACT Humanoid robots are expected to manipulate the objects they have not previously seen in real-life environments. Hence, it is important that the robots have the object recognition capability. However, object recognition is still a challenging problem at different locations and different object positions in real time. The current paper presents four novel models with small structure, based on Convolutional Neural Networks (CNNs) for object recognition with humanoid robots. In the proposed models, a few combinations of convolutions are used to recognize the class labels. The MNIST and CIFAR-10 benchmark datasets are first tested on our models. The performance of the proposed models is shown by comparisons to that of the best state-of-the-art models. The models are then applied on the Robotis-Op3 humanoid robot to recognize the objects of different shapes. The results of the models are compared to those of the models, such as VGG-16 and Residual Network-20 (ResNet-20), in terms of training and validation accuracy and loss, parameter number and training time. The experimental results show that the proposed model exhibits high accurate recognition by the lower parameter number and smaller training time than complex models. Consequently, the proposed models can be considered promising powerful models for object recognition with humanoid robots.
摘要:类人机器人有望操纵他们以前在现实生活中从未见过的物体。因此,机器人具有物体识别能力是很重要的。然而,在不同的位置和不同的物体位置上,物体识别仍然是一个具有挑战性的实时问题。本文提出了四种基于卷积神经网络的小结构仿人机器人目标识别模型。在所提出的模型中,使用了一些卷积的组合来识别类标签。MNIST和CIFAR-10基准数据集首先在我们的模型上进行了测试。通过与最先进的最佳模型的比较,显示了所提出的模型的性能。然后将这些模型应用于Robotis-Op3人形机器人上,以识别不同形状的物体。在训练和验证准确性和损失、参数数量和训练时间方面,将模型的结果与VGG-16和残差网络-20(ResNet-20)等模型的结果进行了比较。实验结果表明,与复杂模型相比,该模型具有较低的参数数量和较小的训练时间,具有较高的识别精度。因此,所提出的模型可以被认为是人形机器人物体识别的有前途的强大模型。
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引用次数: 0
Development of real size IT systems with language competence as a challenge for a Less-Resourced Language: a methodological proposal for Indo-Aryan languages 开发具有语言能力的真实规模的IT系统是对资源较少的语言的挑战:印度雅利安语言的方法论建议
IF 2.7 Q2 COMPUTER SCIENCE, INFORMATION SYSTEMS Pub Date : 2021-10-02 DOI: 10.1080/24751839.2021.1966236
Z. Vetulani, Grazyna Vetulani, P. Mohanty
ABSTRACT In this paper, based on the example of our early works for Polish, we want to share our experience in the challenging task of developing NLP-based technologies in the situation of initial scarcity of digital language resources that ranked Polish among the Less-Resourced Languages. We present some of our projects aiming at language resources and tools we had to create in order to be able to process texts in Polish and develop real-scale systems with language understanding competence. The case study we present here is the rule-based system POLINT-112-SMS for improving information management in emergency situations. We argue in favour of the lexicon-grammar approach to the formal description of inflecting languages and present our current work on this grammatical paradigm. Our current work is on the implementation of the ideas presented in the first part of the paper on three prominent Indian languages, that is, Hindi, Odia, and Bengali.
在本文中,基于我们早期对波兰语的工作,我们想分享我们在数字语言资源最初稀缺的情况下开发基于nlp技术的挑战任务的经验,波兰语被列为资源较少的语言。我们展示了一些针对语言资源和工具的项目,我们必须创建这些资源和工具,以便能够处理波兰语文本并开发具有语言理解能力的实际规模系统。我们在此介绍的案例研究是基于规则的POLINT-112-SMS系统,用于改善紧急情况下的信息管理。我们主张用词典-语法方法来正式描述屈折语言,并介绍我们目前在这种语法范式上的工作。我们目前的工作是将论文第一部分中提出的关于三种主要印度语言(即印地语、奥迪亚语和孟加拉语)的想法付诸实施。
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引用次数: 1
Prediction of user loyalty in mobile applications using deep contextualized word representations 使用深度语境化词表示预测移动应用程序中的用户忠诚度
IF 2.7 Q2 COMPUTER SCIENCE, INFORMATION SYSTEMS Pub Date : 2021-10-01 DOI: 10.1080/24751839.2021.1981684
Z. H. Kilimci
ABSTRACT Customer loyalty is important for many industries, including banking, telecommunications, gaming, and shopping, in terms of sustainability. In mobile applications, it is observed that the demand rises with the usage of mobile devices such as smartphones. Therefore, it is important to predict when players tend to leave an application. Most of the studies so far focus on churn prediction or customer loyalty in mobile applications by analyzing demographic, economic, and behavioral data about customers. In this work, we introduce sentiment analysis-based customer loyalty prediction in mobile applications using word embeddings, deep learning algorithms, and deep contextualized word representations. To our knowledge, this is the first study to evaluate loyalty of customers analyzing sentiments of users from their comments using deep learning, word embedding, and deep contextualized word representation models. For this purpose, CNNs, RNNs, LSTMs, BERT, MBERT, DistilBERT, RoBERT are used for classification purpose. On the other hand, word embedding models such as Word2Vec, GloVe, and FastText are employed for text representation. To demonstrate the impact of proposed model, comprehensive experiments are performed on seven different datasets. The experiment results show sentiment analysis of users in mobile applications can be a powerful indicator in terms of predicting customer loyalty.
客户忠诚度对于包括银行、电信、游戏和购物在内的许多行业的可持续性都很重要。在移动应用程序中,可以观察到需求随着智能手机等移动设备的使用而上升。因此,预测玩家何时会离开应用程序非常重要。到目前为止,大多数研究都是通过分析用户的人口统计、经济和行为数据来关注手机应用的流失预测或用户忠诚度。在这项工作中,我们使用词嵌入、深度学习算法和深度上下文化词表示,在移动应用程序中引入基于情感分析的客户忠诚度预测。据我们所知,这是第一个评估客户忠诚度的研究,该研究使用深度学习、词嵌入和深度语境化词表示模型,从用户的评论中分析用户的情绪。为此,使用cnn、rnn、LSTMs、BERT、MBERT、DistilBERT、RoBERT进行分类。另一方面,使用Word2Vec、GloVe和FastText等词嵌入模型进行文本表示。为了验证所提出的模型的影响,在七个不同的数据集上进行了综合实验。实验结果表明,移动应用中用户情绪分析可以作为预测用户忠诚度的有力指标。
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引用次数: 3
The application of machine learning and deep learning in sport: predicting NBA players’ performance and popularity 机器学习和深度学习在体育中的应用:预测NBA球员的表现和受欢迎程度
IF 2.7 Q2 COMPUTER SCIENCE, INFORMATION SYSTEMS Pub Date : 2021-09-28 DOI: 10.1080/24751839.2021.1977066
Nguyen Hoang Nguyen, Duy Thien An Nguyen, Bingkun Ma, Jiang Hu
ABSTRACT Basketball is known for the vast amount of data collected for each player, team, game, and season. As a result, basketball is an ideal domain to work on different data analysis techniques to gain useful insights. In this study, we continued our previous study published in 2020 Computational Collective Intelligence (12th International Conference, ICCCI 2020, Da Nang, Vietnam, November 30 – December 3, 2020, Proceedings) reviewing some important factors to predict players’ future performance and being selected in an All-Star game, one of the most prestigious events, of National Basket Association league. Besides traditional Machine Learning, Deep Learning is also applied in this study for prediction purpose. However, compared to traditional Machine Learning, Deep Learning’s performance is not as good for our dataset. It is understandable when our data are relatively small and structured with a few predictor variables which limited Deep Learning’s ability to deal with a vast amount of Big Data. Our final results, through both Regression and Classification Analysis, indicated that scoring is the most important factor from the primary players for any team and also basketball fan’s favourable style.
篮球以收集每个球员、球队、比赛和赛季的大量数据而闻名。因此,篮球是研究不同数据分析技术以获得有用见解的理想领域。在本研究中,我们继续了之前发表在2020年计算集体智能(第12届国际会议,ICCCI 2020,越南岘港,2020年11月30日至12月3日,Proceedings)上的研究,回顾了预测球员未来表现和入选全明星赛的一些重要因素,全明星赛是全国篮协联赛最负盛名的赛事之一。除了传统的机器学习之外,本研究还应用了深度学习来进行预测。然而,与传统的机器学习相比,深度学习在我们的数据集上的表现并不好。当我们的数据相对较小且只有几个预测变量时,这是可以理解的,这限制了深度学习处理大量大数据的能力。通过回归和分类分析,我们的最终结果表明,得分是任何球队的主要球员最重要的因素,也是篮球迷的有利风格。
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引用次数: 14
A survey of deep learning approaches for WiFi-based indoor positioning 基于wifi的室内定位深度学习方法综述
IF 2.7 Q2 COMPUTER SCIENCE, INFORMATION SYSTEMS Pub Date : 2021-09-20 DOI: 10.1080/24751839.2021.1975425
Xu Feng, K. Nguyen, Zhiyuan Luo
One of the most popular approaches for indoor positioning is WiFi fingerprinting, which has been intrinsically tackled as a traditional machine learning problem since the beginning, to achieve a few metres of accuracy on average. In recent years, deep learning has emerged as an alternative approach, with a large number of publications reporting sub-metre positioning accuracy. Therefore, this survey presents a timely, comprehensive review of the most interesting deep learning methods being used for WiFi fingerprinting. In doing so, we aim to identify the most efficient neural networks, under a variety of positioning evaluation metrics for different readers. We will demonstrate that despite the new emerging WiFi signal measures (i.e. CSI and RTT), RSS produces competitive performances under deep learning. We will also show that simple neural networks outperform more complex ones in certain environments.
最流行的室内定位方法之一是WiFi指纹识别,从一开始,它就被当作一个传统的机器学习问题来解决,平均精度达到几米。近年来,深度学习作为一种替代方法出现,大量出版物报告了亚米级的定位精度。因此,这项调查及时、全面地回顾了用于WiFi指纹识别的最有趣的深度学习方法。在此过程中,我们的目标是在各种定位评估指标下为不同的读者识别最有效的神经网络。我们将证明,尽管出现了新的WiFi信号测量(即CSI和RTT), RSS在深度学习下仍能产生有竞争力的表现。我们还将展示,在某些环境中,简单的神经网络比更复杂的神经网络表现得更好。
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引用次数: 37
A knowledge-based model for context-aware smart service systems 上下文感知智能服务系统的基于知识的模型
IF 2.7 Q2 COMPUTER SCIENCE, INFORMATION SYSTEMS Pub Date : 2021-08-23 DOI: 10.1080/24751839.2021.1962105
T. Dinh, Thanh Thoa Pham Thi, C. Pham-Nguyen, Le Nguyen Hoai Nam
ABSTRACT The advancement of the Internet of Things, big data, and mobile computing leads to the need for smart services that enable the context awareness and the adaptability to their changing contexts. Today, designing a smart service system is a complex task due to the lack of an adequate model support in awareness and pervasive environment. In this paper, we present the concept of a context-aware smart service system and propose a knowledge model for context-aware smart service systems. The proposed model organizes the domain and context-aware knowledge into knowledge components based on the three levels of services: Services, Service system, and Network of service systems. The knowledge model for context-aware smart service systems integrates all the information and knowledge related to smart services, knowledge components, and context awareness that can play a key role for any framework, infrastructure, or applications deploying smart services. In order to demonstrate the approach, two case studies about chatbot as context-aware smart services for customer support are presented.
物联网、大数据和移动计算的发展导致对智能服务的需求,这些服务能够感知环境并适应不断变化的环境。目前,由于缺乏足够的模型支持,智能服务系统的设计是一项复杂的任务。本文提出了上下文感知智能服务系统的概念,并提出了上下文感知智能服务系统的知识模型。该模型基于服务、服务系统和服务系统网络这三个服务层次,将领域知识和上下文感知知识组织为知识组件。上下文感知智能服务系统的知识模型集成了与智能服务、知识组件和上下文感知相关的所有信息和知识,这些信息和知识可以在部署智能服务的任何框架、基础设施或应用程序中发挥关键作用。为了演示该方法,本文介绍了两个关于聊天机器人作为客户支持的上下文感知智能服务的案例研究。
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引用次数: 6
A road accident pattern miner (RAP miner) 道路事故模式挖掘器(RAP挖掘器)
IF 2.7 Q2 COMPUTER SCIENCE, INFORMATION SYSTEMS Pub Date : 2021-08-17 DOI: 10.1080/24751839.2021.1955533
S. M. N. Arosha Senanayake, Sisir Joshi
ABSTRACT Domain-specific data service models can retrieve critical features from frequently occurring road accident patterns (RAPs). The aim of this research is to propose scan efficient association rules’ mining-based pattern analysis which provides more accurate RAP prediction in frequent accident locations with the fastest matching pattern search from a RAP database (RAP DB). Association rules’ mining technique derives a correlation between frequent RAP and association among various attributes of a road accident. While the clustering technique discriminates different RAPs, Naïve Bayes Classification classifies and then predicts the severity of accident using Fuzzy Inference Engine (FIE) interfaced with RAP Case Library (RAP CL) using hybrid intelligence. The results of the proposed road accident data service model prove a significant increase in the accuracy of accident prediction compared to the reported results. A novel hybrid learning algorithm, interfaced with Scan Efficient Apriori (SEA) algorithm implemented, leads the fast RAP search from the first scan through RAP CL and retain new RAP in the RAP CL using case-based reasoning (CBR) during subsequent scanning. Thus, the RAP miner built proves road accident prediction using SEA, FIE and CBR with the highest accuracy and fast RAP set processing.
特定领域的数据服务模型可以从频繁发生的道路事故模式(rap)中检索关键特征。本研究的目的是提出基于扫描高效关联规则挖掘的模式分析,以最快的匹配模式搜索RAP数据库(RAP DB),在频繁事故地点提供更准确的RAP预测。关联规则挖掘技术将频繁的RAP与道路事故的各种属性之间的关联联系起来。聚类技术区分不同的RAPs, Naïve贝叶斯分类使用混合智能模糊推理引擎(FIE)与RAP案例库(RAP CL)接口对事故进行分类并预测事故严重程度。所提出的道路事故数据服务模型的结果证明,与报告的结果相比,事故预测的准确性有显著提高。一种新的混合学习算法,与实现的扫描效率Apriori (SEA)算法接口,从第一次扫描到RAP CL中引导快速RAP搜索,并在后续扫描期间使用基于案例的推理(CBR)在RAP CL中保留新的RAP。因此,构建的RAP miner证明了使用SEA、FIE和CBR进行道路事故预测具有最高的准确性和快速的RAP集处理。
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引用次数: 1
期刊
Journal of Information and Telecommunication
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