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2022 IEEE-EMBS International Conference on Biomedical and Health Informatics (BHI)最新文献

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Comparison of PPG and BCG Features for Camera-based Blood Pressure Estimation by Ice Water Stimulation PPG与BCG特征在冰水刺激下相机测血压中的比较
Pub Date : 2022-09-27 DOI: 10.1109/BHI56158.2022.9926833
Guanghang Liao, Caifeng Shan, Wenjin Wang
Non-invasive Blood Pressure (BP) measurement is highly demanded for pervasive healthcare with the development of Internet of Things, sensors and mobile technology. Camera-based Photoplethysmography (camera-PPG) has been applied for non-contact BP estimation. Most camera-PPG based approaches calculate the Pulse Transmission Time between different peripheral sites like face and palm for BP calibration, which require more than one body part to be simultaneously measured and thus introduce inconvenience to real applications. In this study, we investigate the feasibility of measuring BP from a single body site using either the forehead PPG signals or neck ballistocardiographic (BCG) motion signals. Two morphological features (K-value and Augmentation Index) that have clinical meanings for BP monitoring have been compared. The study was conducted in the ice water stimulation experiment involving 16 healthy subjects. The results show that the neck can be an attractive site for BP estimation as the neck-BCG signals show more distinct features (e.g. dicrotic wave) that have stronger correlations with BP than the forehead-PPG signals, and it eliminates the privacy issue of imaging a face. Both the K-value and Augmentation Index can well track the changes of BP. The conclusions drawn from this study inspire the selection of physiological site and features for non-contact BP estimation.
随着物联网、传感器和移动技术的发展,无创血压(BP)测量在普适医疗中有着很高的需求。基于相机的光电体积脉搏波(camera-PPG)已被应用于非接触式BP估计。大多数基于相机- ppg的方法计算面部和手掌等不同外围部位之间的脉冲传输时间进行BP校准,这需要同时测量多个身体部位,因此给实际应用带来不便。在这项研究中,我们探讨了使用前额PPG信号或颈部BCG运动信号从单个身体部位测量血压的可行性。比较了两种形态学特征(k值和增强指数)对血压监测的临床意义。本研究采用冰水刺激实验,16名健康受试者参与。结果表明,与前额- ppg信号相比,颈部- bcg信号具有更明显的特征(如dicrotic波),与BP具有更强的相关性,并且消除了面部成像的隐私问题,因此可以作为BP估计的一个有吸引力的位置。k值和增强指数都能很好地跟踪BP的变化。本研究的结论为非接触BP估计的生理部位和特征的选择提供了启发。
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引用次数: 0
RetainEXT: Enhancing Rare Event Detection and Improving Interpretability of Health Records using Temporal Neural Networks 使用时间神经网络增强罕见事件检测和改善健康记录的可解释性
Pub Date : 2022-09-27 DOI: 10.1109/BHI56158.2022.9926906
Suraj Ramchand, Gavin Tsang, Duncan Cole, Xianghua Xie
A recurring theme during the pandemic was the shortage of hospital beds. Despite all efforts, the healthcare system still faces 25 % of resource strain felt during the first peak of coronavirus. Digitisation of Electronic Healthcare Records (EHRs) and the pandemic have brought about many successful applications of Recurrent Neural Networks (RNNs) to predict patients' current and future states. Despite their strong per-formance, it remains a challenge for users to delve into the black box which has heavily influenced researchers to utilise more interpretable techniques such as ID-Convolutional neural networks. Others focus on using more interpretable machine learning techniques but only achieve high performance on a select subset of patients. By collaborating with medical experts and artificial intelligence scientists, our study improves on the REverse Time AttentIoN EX model, a feature and visit level attention network, for increased interpretability and usability of RNNs in predicting COVID-19-related hospitalisations. We achieved 82.40 % area under the receiver operating characteristic curve and showcased effective use of the REverse Time AttentIoN EXTension model and EHRs in understanding how individual medical codes contribute to hospitalisation risk prediction. This study provides a guideline for researchers aiming to design interpretable temporal neural networks using the power of RNNs and data mining techniques.
大流行期间反复出现的一个主题是医院床位短缺。尽管做出了所有努力,但医疗保健系统仍然面临着冠状病毒第一次高峰期间25%的资源紧张。电子医疗记录(EHRs)的数字化和大流行带来了许多成功的应用递归神经网络(rnn)来预测患者当前和未来的状态。尽管它们表现出色,但对于用户来说,深入研究黑匣子仍然是一个挑战,这严重影响了研究人员利用更多可解释的技术,如id -卷积神经网络。其他人则专注于使用更具可解释性的机器学习技术,但仅在选定的患者子集上实现高性能。通过与医学专家和人工智能科学家合作,我们的研究改进了REverse Time AttentIoN EX模型(一个特征和访问级注意力网络),以提高rnn在预测covid -19相关住院治疗方面的可解释性和可用性。我们在接收者工作特征曲线下获得了82.40%的面积,并展示了反向时间注意力扩展模型和电子病历在理解个人医疗代码如何有助于住院风险预测方面的有效使用。这项研究为旨在利用rnn和数据挖掘技术设计可解释的时间神经网络的研究人员提供了指导。
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引用次数: 0
Multi-label Neural Model for Prediction of Myocardial Infarction Complications with Resampling and Explainability 多标签神经模型预测心肌梗死并发症的重采样及可解释性
Pub Date : 2022-09-27 DOI: 10.1109/BHI56158.2022.9926915
Munib Mesinovic, Kai-Wen Yang
With myocardial infarctions accounting for the largest percent of cardiovascular-related deaths, the need for machine learning tools in prediction and prevention has never been clearer. Specifically, in the case of in-hospital complications following acute myocardial infarction (AMI), even with decreased in-hospital mortality rate due to improved hospital care, patients who survive the acute phase of MI remain at risk for MI-associated complications or recurrent AMI such as bundle branch blocks and angina. In this paper, we propose a multi-label framework to predict the occurrence of 5 complications following admission of 1,700 patients after suffering an AMI episode. We evaluate the models using several multi-label prediction metrics as a test of robustness of our method beating numerous other alternatives and comment on the balance of cost-effectiveness of a compact deep learning model versus shallow machine learning in the multi-label context. Our neural network outperformed 13 other algorithms across all metrics, except Hamming loss. We also implement Shapley value analysis to this multi-label problem and observe interesting behaviour such as the duration of arterial hypertension and time elapsed from the beginning of the attack to the hospital being key predictive features of lethal outcome. This framework presents a novel approach in using multi-label learning, and especially compact cost-effective deep learning, simultaneous for prediction of several AMI complications which has not been explored previously.
由于心肌梗死占心血管相关死亡的最大比例,机器学习工具在预测和预防方面的需求从未如此清晰。具体来说,在急性心肌梗死(AMI)后出现院内并发症的情况下,即使由于医院护理的改善而降低了院内死亡率,但在急性期存活下来的患者仍有发生AMI相关并发症或复发性AMI(如束支阻滞和心绞痛)的风险。在本文中,我们提出了一个多标签框架来预测1700例AMI发作患者入院后5种并发症的发生。我们使用几个多标签预测指标来评估模型,作为我们方法击败许多其他替代方案的鲁棒性测试,并评论在多标签上下文中紧凑深度学习模型与浅机器学习的成本效益平衡。我们的神经网络在所有指标上都优于其他13种算法,除了汉明损失。我们还对这个多标签问题实施了Shapley值分析,并观察了有趣的行为,如动脉高血压的持续时间和从发作开始到医院的时间是致命结果的关键预测特征。该框架提出了一种使用多标签学习的新方法,特别是紧凑的经济高效的深度学习,同时用于预测以前未探索的几种AMI并发症。
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引用次数: 0
Vision Transformer Based COVID-19 Detection Using Chest CT-scan images 基于视觉变压器的COVID-19胸部ct扫描图像检测
Pub Date : 2022-09-27 DOI: 10.1109/BHI56158.2022.9926823
P. Sahoo, S. Saha, S. Mondal, Suraj Gowda
The fast proliferation of the coronavirus around the globe has put several countries' healthcare systems in danger of collapsing. As a result, locating and separating COVID-19-positive patients is a critical task. Deep Learning approaches were used in several computer-aided automated systems that utilized chest computed tomography (CT-scan) or X-ray images to create diagnostic tools. However, current Convolutional Neural Network (CNN) based approaches cannot capture the global context because of inherent image-specific inductive bias. These techniques also require large and labeled datasets to train the algorithm, but not many labeled COVID-19 datasets exist publicly. To mitigate the problem, we have developed a self-attention-based Vision Transformer (ViT) architecture using CT-scan. The proposed ViT model achieves an accuracy of 98.39% on the popular SARS-CoV-2 datasets, outperforming the existing state-of-the-art CNN-based models by 1%. We also provide the characteristics of CT scan images of the COVID-19-affected patients and an error analysis of the model's outcome. Our findings show that the proposed ViT-based model can be an alternative option for medical professionals for effective COVID-19 screening. The implementation details of the proposed model can be accessed at https://github.com/Pranabiitp/ViT.
冠状病毒在全球的快速扩散使一些国家的医疗保健系统面临崩溃的危险。因此,寻找和隔离新冠病毒阳性患者是一项关键任务。深度学习方法被用于几个计算机辅助自动化系统,这些系统利用胸部计算机断层扫描(ct扫描)或x射线图像来创建诊断工具。然而,目前基于卷积神经网络(CNN)的方法由于固有的图像特定归纳偏差而无法捕获全局上下文。这些技术还需要大型和标记的数据集来训练算法,但公开存在的标记COVID-19数据集并不多。为了缓解这个问题,我们开发了一种使用ct扫描的基于自注意力的视觉转换器(ViT)架构。提出的ViT模型在流行的SARS-CoV-2数据集上实现了98.39%的准确率,比现有最先进的基于cnn的模型高出1%。我们还提供了受covid -19影响患者的CT扫描图像特征和模型结果的误差分析。我们的研究结果表明,提出的基于viti的模型可以成为医疗专业人员有效筛查COVID-19的替代选择。建议模型的实现细节可以在https://github.com/Pranabiitp/ViT上访问。
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引用次数: 4
TrustSleepNet: A Trustable Deep Multimodal Network for Sleep Stage Classification TrustSleepNet:一个可信赖的深度多模态睡眠阶段分类网络
Pub Date : 2022-09-27 DOI: 10.1109/BHI56158.2022.9926875
Guanjie Huang, Fenglong Ma
Correctly classifying different sleep stages is a critical and prerequisite step in diagnosing sleep-related issues. In practice, the clinical experts must manually review the polysomnography (PSG) recordings to classify sleep stages. Such a procedure is time-consuming, laborious, and potentially prone to human subjective errors. Deep learning-based methods have been successfully adopted for automatically classifying sleep stages in recent years. However, they cannot simply say “I do not know” when they are uncertain in their predictions, which may easily create significant risk in clinical applications, despite their good performance. To address this issue, we propose a deep model, named TrustSleepNet, which contains evidential learning and cross-modality attention modules. Evidential learning predicts the probability density of the classes, which can learn an uncertainty score and make the prediction trustable in real-world clinical applications. Cross-modality attention adaptively fuses multimodal PSG data by enhancing the significant ones and suppressing irrelevant ones. Experimental results demonstrate that TrustSleepNet outperforms state-of-the-art benchmark methods, and the uncertainty score makes the prediction more trustable and reliable.
正确划分不同的睡眠阶段是诊断睡眠相关问题的关键和先决条件。在实践中,临床专家必须手动查看多导睡眠图(PSG)记录来对睡眠阶段进行分类。这样的程序耗时、费力,而且可能容易出现人为的主观错误。近年来,基于深度学习的方法已被成功地用于睡眠阶段的自动分类。然而,当他们的预测不确定时,他们不能简单地说“我不知道”,这可能很容易在临床应用中产生重大风险,尽管他们的表现很好。为了解决这个问题,我们提出了一个深度模型,名为TrustSleepNet,它包含证据学习和跨模态关注模块。证据学习预测类的概率密度,可以学习不确定性分数,使预测在实际临床应用中具有可信度。跨模态注意通过增强显著信息和抑制不相关信息来自适应融合多模态PSG数据。实验结果表明,TrustSleepNet优于最先进的基准方法,不确定性评分使预测更加可信和可靠。
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引用次数: 0
A hybrid approach based on dynamic trajectories to predict mortality in COVID-19 patients upon steroids administration 基于动态轨迹预测类固醇治疗后COVID-19患者死亡率的混合方法
Pub Date : 2022-09-27 DOI: 10.1109/BHI56158.2022.9926889
V. Pezoulas, Eygenia Mylona, C. Papaloukas, Angelos Liontos, Dimitrios Biros, Orestis I. Milionis, C. Kyriakopoulos, K. Kostikas, H. Milionis, D. Fotiadis
Since the World Health Organization (WHO) has declared Artificial Intelligence (AI) as a powerful tool in the fight against COVID-19, multiple studies have been launched aiming to shed light into risk factors for ICU admission and mortality. None of the existing studies, however, have captured the dynamic trajectories of hospitalized COVID-19 patients who receive steroids nor have explored trajectory-based mortality indicators. In this work, we present a novel, hybrid approach to address this need. Latent Growth Mixture Modelling (LGMM) was used to analyze the trajectories of patients who received steroids. The patients were then grouped into clusters based on the similarity of their dynamic trajectories. State-of-the art machine learning classifiers are trained on the original dataset with and without dynamic trajectories to assess whether their inclusion can enhance the prediction of mortality. Our results highlight the importance of trajectories for predicting mortality in patients who receive steroids yielding 4% and 5% increase in the sensitivity (0.84) and specificity (0.85). The FiO2 and percentage of neutrophils at day 5, along with the percentage of lymphocytes at day 7, were identified as the main causes for mortality in patients who receive steroids, where the SatO2 levels showed significant alterations in the dynamic trajectories.
自从世界卫生组织(WHO)宣布人工智能(AI)是抗击COVID-19的有力工具以来,已经开展了多项研究,旨在揭示ICU入院和死亡的危险因素。然而,现有的研究都没有捕捉到接受类固醇治疗的COVID-19住院患者的动态轨迹,也没有探索基于轨迹的死亡率指标。在这项工作中,我们提出了一种新颖的混合方法来解决这一需求。使用潜在生长混合物模型(LGMM)来分析接受类固醇治疗的患者的轨迹。然后根据患者动态轨迹的相似性将其分组。最先进的机器学习分类器在有或没有动态轨迹的原始数据集上进行训练,以评估它们的包含是否可以增强对死亡率的预测。我们的研究结果强调了预测接受类固醇治疗的患者死亡率的轨迹的重要性,其敏感性(0.84)和特异性(0.85)分别增加了4%和5%。第5天的FiO2和中性粒细胞百分比以及第7天的淋巴细胞百分比被确定为接受类固醇治疗的患者死亡的主要原因,其中SatO2水平在动态轨迹中显示出显着的变化。
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引用次数: 0
Tsakaneli Stavroula
Pub Date : 2022-09-27 DOI: 10.1109/BHI56158.2022.9926949
Tsakaneli Stavroula, E. Bei, M. Zervakis
Multiple sclerosis (MS) is a chronic inflammatory demyelinating disease that affects approximately 2.8 million persons globally. While there is currently no cure for this neurodegenerative disease, MS has become a highly manageable disease through treatment options like disease-modifying medications, that can help to control the symptoms and slow disease progression. Among them, interferon beta (IFNβ) therapy is a first-line treatment for MS but has shown to be only partially effective. Thus, it is important to identify biomarkers that aid in early identification of IFNβ responders. In this study, based on gene expression profiles from untreated and interferon treated patients from a publicly available dataset, we performed differential expression analysis and Pigengene network association (weighted correlation network analysis (WGCNA) and Bayesian networks modeling) in order to construct a high-confidence protein-protein (PPI) interaction network. Subsequently, aiming to find the most significant clustering modules and hub genes, we applied a number of topological analysis methods (cytoHubba plugin) followed by MCODE clustering algorithm. Our approach resulted in highly connected hub genes generating a reliable 21-hubgene signature that could predict the response of interferon beta (IFNβ) therapy in patients with MS. The 21-hub-gene signature showed high classification performance (Accuracy = 91,49%, Sensitivity = 94.55%, Specificity = 87.15%) demonstrating potential clinical benefit.
多发性硬化症(MS)是一种慢性炎症性脱髓鞘疾病,影响全球约280万人。虽然目前还没有治愈这种神经退行性疾病的方法,但多发性硬化症已经成为一种高度可控的疾病,通过治疗选择,如疾病缓解药物,可以帮助控制症状,减缓疾病进展。其中,干扰素β (IFNβ)治疗是多发性硬化症的一线治疗方法,但已显示仅部分有效。因此,确定有助于早期识别IFNβ应答者的生物标志物是很重要的。在这项研究中,基于来自公开数据集的未经治疗和干扰素治疗的患者的基因表达谱,我们进行了差异表达分析和Pigengene网络关联(加权相关网络分析(WGCNA)和贝叶斯网络建模),以构建高置信度的蛋白质-蛋白质(PPI)相互作用网络。随后,为了找到最显著的聚类模块和枢纽基因,我们应用了多种拓扑分析方法(cytoHubba插件),然后使用了MCODE聚类算法。我们的方法导致高度连接的枢纽基因产生可靠的21-hubgene标记,可以预测干扰素β (IFNβ)治疗对ms患者的反应。21-hub基因标记显示出高分类性能(准确性= 91%,49%,灵敏度= 94.55%,特异性= 87.15%),显示出潜在的临床益处。
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引用次数: 0
Classification of Sleep Apnea via SpO2 in a Simulated Smartwatch Environment 模拟智能手表环境下SpO2对睡眠呼吸暂停的分类
Pub Date : 2022-09-27 DOI: 10.1109/BHI56158.2022.9926966
Brendan Lyden, Zachary Dair, Ruairi O'Reilly
Sleep apnea is one of the most common sleep disorders. To diagnose sleep apnea, a patient must undertake a polysomnography where multiple physiological signals are recorded in a specialised sleep laboratory. Reducing the number of physiological signals necessary for a diagnosis and enabling data monitoring in a distributed fashion would assist in the detection of sleep apnea. Smartwatches are becoming more advanced, with the current generation capable of deriving blood oxygen saturation, which can indicate sleep apnea. This work evaluates the efficacy of sleep apnea classifiers in a simulated smartwatch environment. Results demonstrate that SpO2 is a performant signal for classifying sleep apnea. Naive Bayes trained with features extracted from a Long Short Term Memory Network is capable of classifying sleep apnea with an accuracy of 97.04%, outperforming state-of-the-art approaches. Classification within the simulated smartwatch environment demonstrates robustness up to a signal-to-noise ratio of 50 dB and maintains high levels of accuracy at sampling frequencies above 25 Hz. These encouraging results show substantial potential for smartwatches to provide timely, accessible sleep apnea screening and enable automated diagnostics reducing the reliance on specialist centres.
睡眠呼吸暂停是最常见的睡眠障碍之一。为了诊断睡眠呼吸暂停,患者必须在专门的睡眠实验室进行多导睡眠描记术,记录多种生理信号。减少诊断所需的生理信号数量,并以分布式方式实现数据监测,将有助于检测睡眠呼吸暂停。智能手表正变得越来越先进,目前的智能手表能够测量血氧饱和度,这可以预示睡眠呼吸暂停。这项工作评估了睡眠呼吸暂停分类器在模拟智能手表环境中的功效。结果表明,SpO2是对睡眠呼吸暂停进行分类的有效信号。使用从长短期记忆网络中提取的特征进行训练的朴素贝叶斯能够以97.04%的准确率对睡眠呼吸暂停进行分类,优于最先进的方法。在模拟智能手表环境中的分类显示了高达50 dB的信噪比的鲁棒性,并在高于25 Hz的采样频率下保持高水平的精度。这些令人鼓舞的结果表明,智能手表在提供及时、便捷的睡眠呼吸暂停筛查和实现自动诊断方面具有巨大潜力,可以减少对专业中心的依赖。
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引用次数: 2
Cognitive-emotional Stress and Risk Stratification of Situational Awareness in Immersive First Responder Training 沉浸式急救训练中情境意识的认知-情绪应激和风险分层
Pub Date : 2022-09-27 DOI: 10.1109/BHI56158.2022.9926805
L. Paletta, M. Pszeida, M. Schneeberger, Amir Dini, Lilian Reim, W. Kallus
First responders engage in highly stressful situations at the emergency site. Maintaining cognitive control under these circumstances is a necessary condition to perform efficient decision making for the purpose of own health and to pursue mission objectives. We are aiming at developing biosensor-based decision support for risk stratification on cognitive readiness of first responders at the mission site. In a first development stage, an exploratory pilot study was performed to test a formalized reporting schema applying equivalent stress in real, non-immersive and fully immersive training environments. Wearable psychophysiological measurement technology was applied to estimate the cognitive-emotional stress level under both training conditions. In this work we particularly focus on the potential of predicting the risk level for failures in situation awareness from digital analysis of cognitive-emotional stress. The results provide statistically significant indications for risk stratification of cognitive readiness based on situation awareness theory.
第一响应者在紧急情况现场参与高度紧张的情况。在这种情况下保持认知控制是为了自身健康和追求任务目标而进行有效决策的必要条件。我们的目标是开发基于生物传感器的决策支持,以对任务现场第一响应者的认知准备情况进行风险分层。在第一个开发阶段,进行了一项探索性试点研究,以测试在真实、非沉浸式和完全沉浸式训练环境中应用等效压力的形式化报告模式。采用可穿戴式心理生理测量技术评估两种训练条件下的认知-情绪应激水平。在这项工作中,我们特别关注从认知-情绪压力的数字分析中预测情境意识失败风险水平的潜力。结果为基于情境感知理论的认知准备风险分层提供了具有统计学意义的指标。
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引用次数: 0
Spectrogram Image-based Machine Learning Model for Carotid-to-Femoral Pulse Wave Velocity Estimation Using PPG Signal 基于频谱图图像的PPG信号颈-股脉波速度估计机器学习模型
Pub Date : 2022-09-27 DOI: 10.1109/BHI56158.2022.9926941
Juan Manuel Vargas Garcia, M. Bahloul, T. Laleg‐Kirati
Carotid-to-femoral pulse wave velocity (cf-PWV) is a critical biomarker for evaluating arterial stiffness and cardiovascular risk. Monitoring cf-PWV is essential for cardiovascular disease diagnosis and prediction. However, the complexity during the measurement process of cf-PWV makes it prone to present errors and inaccuracies. For this reason, a learning-based non-invasive measurement of cf-PWV using peripheral signals could overcome some of the difficulties presented in the classical measurement process and improve the quality of the estimation. In this paper, a spectrogram-based machine learning model obtained from the photoplethysmogram (PPG) waveform is proposed for the estimation of the cf-PWV. For this purpose, two machine learning models have been developed using three different types of features. The first category is based on an adaptive signal processing method called Semi-Classical Signal Analysis (SCSA) that relies on the spectral problem of the Schrodinger operator; the second type proposed is energy texture-based, and the third is the statistical texture representation. Finally, the training and testing datasets were extracted from in-silico, publicly available pulse waves and hemodynamics data. The obtained results provide evidence for the feasibility and robustness of the spectrogram to transform the signals into an image and machine learning method as a tool for estimating the cf-PWV.
颈动脉至股动脉脉波速度(cf-PWV)是评估动脉僵硬度和心血管风险的重要生物标志物。监测cf-PWV对心血管疾病的诊断和预测至关重要。然而,cf-PWV测量过程的复杂性使其容易出现误差和不准确性。因此,利用外围信号进行基于学习的cf-PWV无创测量可以克服经典测量过程中存在的一些困难,提高估计质量。本文提出了一种基于谱图的机器学习模型,该模型由光容积脉搏波(PPG)波形获得,用于估计cf-PWV。为此,使用三种不同类型的特征开发了两个机器学习模型。第一类是基于一种自适应信号处理方法,称为半经典信号分析(SCSA),它依赖于薛定谔算子的频谱问题;第二种是基于能量纹理的纹理表示,第三种是统计纹理表示。最后,训练和测试数据集从计算机中提取,公开可用的脉搏波和血流动力学数据。所得结果证明了谱图将信号转化为图像的可行性和鲁棒性,以及机器学习方法作为估计cf-PWV的工具。
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引用次数: 0
期刊
2022 IEEE-EMBS International Conference on Biomedical and Health Informatics (BHI)
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