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Significant improvements in targeted UHPLC-ESI-MS/MS analysis of the reactive aldehydes 4-hydroxy-2(E)-nonenal and 4-hydroxy-2(E)-hexenal and application to rat serum. 4-羟基-2(E)-壬烯醛和4-羟基-2(E)-己烯醛的靶向UHPLC-ESI-MS/MS分析及在大鼠血清中的应用
IF 2.8 3区 医学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-11-01 Epub Date: 2025-07-31 DOI: 10.1016/j.jchromb.2025.124747
S Chevolleau, C Orlandi, L Mervant, R Vuillaume, I Jouanin, N Naud, F Pierre, F Gueraud, L Debrauwer

The elevated risk of colorectal cancer (CRC) induced by red or processed meat rich diets is now established. Those haem‑iron rich diets induce luminal lipid peroxidation, one of the most recognised hypotheses explaining CRC promotion. Due to their known toxic properties, quantification of reactive aldehydes such as 4-hydroxy-2(E)-nonenal (HNE) and 4-hydroxy-2(E)-hexenal (HHE) as lipid peroxidation end-products in biological fluids is of upmost importance. Following previous works on faecal waters, an UHPLC-ESI-MS/MS method has been developed and validated for HNE and HHE quantification in rat serum, using deuterated internal standards (ISs). After protein precipitation (PP) and solid phase extraction (SPE), LC-ESI-MS/MS analysis was achieved by MRM. The use of a brominated derivatisation reagent allowed using the bromine isotopes for selective detection of both HNE and HHE based on diagnostic transitions. This new method was validated according to the European Medicines Agency (EMA) guidelines. Our method proved to efficiently determine HNE and HHE serum concentrations with the required sensitivity (nM range) in serum of rats fed diets rich or not in red meat and different fatty acid compositions.

富含红肉或加工肉类的饮食引起的结直肠癌(CRC)风险升高现已确定。这些富含血红素铁的饮食诱导腔内脂质过氧化,这是解释结直肠癌促进的最公认的假说之一。由于其已知的毒性,活性醛如4-羟基-2(E)-壬烯醛(HNE)和4-羟基-2(E)-己烯醛(HHE)作为生物体液中脂质过氧化终产物的量化是最重要的。根据之前对粪便水的研究,我们开发了UHPLC-ESI-MS/MS方法,并使用氘化内标(ISs)对大鼠血清中的HNE和HHE进行了定量。蛋白质沉淀(PP)和固相萃取(SPE)后,通过MRM进行LC-ESI-MS/MS分析。溴化衍生试剂的使用允许使用溴同位素选择性检测HNE和HHE基于诊断转变。这种新方法是根据欧洲药品管理局(EMA)指南进行验证的。结果表明,该方法能有效测定饲粮中是否含红肉和不同脂肪酸组成的大鼠血清中HNE和HHE的浓度,灵敏度(nM范围)符合要求。
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引用次数: 0
Integrating network pharmacology and metabolomics to elucidate the mechanism of action of Yangluan formula for treating of diminished ovarian reserve. 结合网络药理学和代谢组学研究阳鸾方治疗卵巢储备功能减退的作用机制。
IF 2.8 3区 医学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-11-01 Epub Date: 2025-08-06 DOI: 10.1016/j.jchromb.2025.124749
Yang Wang, Panwei Hu, Hua Yan, Yuanyuan Wu, Ping Yin, Dongyi Shen, Xiaole Zhang, Cong Qi, Qinhua Zhang

Objectives: The Yangluan Formula (YLF) influences the outcomes of in vitro fertilization-embryo transfer (IVF-ET) in infertile women with diminished ovarian reserve (DOR); however, the potential mechanisms by which YLF ameliorates DOR have not yet been elucidated. The aim of this study was to examine the effects of YLF on IVF-ET outcomes in infertile women with DOR, and to elucidate the potential mechanisms by which YLF addresses DOR.

Methods: Non-targeted metabolomics studies were conducted on follicular fluid specimens procured from individuals with DOR treated with or without YLF, and from patients with normal ovarian reserve who underwent IVF-ET treatment. Distinct metabolites were identified using untargeted metabolomics, and MetaboAnalyst was used to examine metabolic pathways. After applying network pharmacology (NP), the target of YLF acting on DOR was determined. Cytoscape software was used to develop compound-reaction-enzyme-gene networks, and molecular docking (MD) simulations were conducted to confirm the link between YLF and crucial targets.

Results: Patients with DOR showed a notable reduction in the number of oocytes retrieved, incidence of 2PN fertilization, and number of cleaved embryos (P < 0.001). Additionally, the DOR cohort exhibited a markedly reduced quantity of high-quality embryos on day 3 compared to the CON cohort (P < 0.005). In contrast to the DOR cohort, the YLF cohort exhibited notably superior outcomes in terms of 2PN fertilization rates, cleavage-stage embryo development, and the number of high-grade embryos on day 3 (P < 0.05). The proportion of 2PN fertilization observed in YLF subjects substantially exceeded that in DOR individuals (81.2 % vs. 64.3 %, P < 0.05). Combined analysis of metabolomics and NP, focusing on five key targets for the action of YLF (monoamine oxidase A, monoamine oxidase B, myeloperoxidase, xanthine dehydrogenase, and phosphodiesterase 3A), four key metabolites (pelargonic acid, 1-(5-Phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate, isokobusone, 5-O-(1-Carboxyvinyl)-3-phosphoshikimate), and two related pathways (glycine, serine, alanine, and threonine metabolism).

Conclusion: We elucidated the mode of action of YLF in DOR treatment by integrating metabolomics and NP. YLF can effectively improve IVF outcomes in patients with DOR. This study provides new perspectives on the mechanism by which YLF improves ovarian function.

目的:阳栾方(YLF)对卵巢储备功能减退(DOR)不孕症患者体外受精-胚胎移植(IVF-ET)结果的影响;然而,YLF改善DOR的潜在机制尚未阐明。本研究的目的是研究YLF对DOR不孕妇女IVF-ET结果的影响,并阐明YLF治疗DOR的潜在机制。方法:对接受或不接受YLF治疗的DOR患者以及接受IVF-ET治疗的卵巢储备正常患者的卵泡液标本进行非靶向代谢组学研究。使用非靶向代谢组学鉴定不同的代谢物,并使用MetaboAnalyst检查代谢途径。应用网络药理学(network pharmacology, NP)确定了YLF作用于DOR的靶点。使用Cytoscape软件构建化合物-反应-酶-基因网络,并进行分子对接(MD)模拟以确认YLF与关键靶点之间的联系。结果:DOR患者获得的卵母细胞数量、2PN受精发生率和卵裂胚胎数量明显减少(P)。结论:结合代谢组学和NP,我们阐明了YLF在DOR治疗中的作用模式。YLF可有效改善DOR患者的体外受精结果。本研究为探讨YLF改善卵巢功能的机制提供了新的视角。
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引用次数: 0
LC-HRMS- and TLC-based metabolomics for the identification and authentication of Sida rhombifolia 以LC-HRMS和tlc为基础的代谢组学方法鉴别和鉴定白桦。
IF 2.8 3区 医学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-10-31 DOI: 10.1016/j.jchromb.2025.124834
Uswatun Hasanah , Eti Rohaeti , Irmanida Batubara , Utami Dyah Syafitri , Rudi Heryanto , Taopik Ridwan , Nancy Dewi Yuliana , Mohamad Rafi
Ensuring the authenticity and quality of Sida rhombifolia raw materials is crucial for its herbal medicinal product's consistent efficacy, quality, and safety. In this study, we developed an identification and authentication method for identifying and authenticating S. rhombifolia from Turnera subulata. T. subulata has the same leaf morphology as S. rhombifolia, so that it could be used as an adulteration raw material for S. rhombifolia. We employed liquid chromatography-high resolution mass spectrometry (LC-HRMS)- and thin-layer chromatography (TLC)-based metabolomics for that purpose. Distinct chemical fingerprints of S. rhombifolia from T. subulata were obtained using LC-HRMS and TLC fingerprint analysis. Mixtures of S. rhombifolia and T. subulata powdered samples at varying concentrations (5 %, 25 %, and 50 % w/w) were analyzed using principal component analysis (PCA) and orthogonal partial least squares discriminant analysis (OPLS-DA) to see differences of each group. The PCA score plot from the TLC analysis explained over 70 % of the total variance, while LC-HRMS data provided the highest classification accuracy at 97.05 %. This integrated approach enhances the reliability of S. rhombifolia authentication by combining TLC's rapid profiling capability with LC-HRMS's analytical precision. This study provides a robust analytical framework for the quality control of herbal medicines, specifically addressing challenges related to adulteration.
确保思达连翘原料的真实性和质量对其草药产品的一致疗效、质量和安全性至关重要。在本研究中,我们建立了一种鉴别和鉴定地下土白桦的鉴定方法。毛茛叶形态与黄双歧花相同,可作为黄双歧花的掺假原料。为此,我们采用了液相色谱-高分辨率质谱(LC-HRMS)和基于薄层色谱(TLC)的代谢组学。采用LC-HRMS和TLC指纹图谱分析方法,获得了不同种类的金缕兰化学指纹图谱。采用主成分分析(PCA)和正交偏最小二乘判别分析(OPLS-DA)对不同浓度(5%、25%和50% w/w)的白桦和毛茛混合粉末样品进行分析,比较各组间的差异。来自TLC分析的PCA评分图解释了总方差的70%以上,而LC-HRMS数据提供了最高的分类准确率,为97.05%。这种综合方法结合了薄层色谱的快速分析能力和LC-HRMS的分析精度,提高了白桦鉴别的可靠性。本研究为草药质量控制提供了一个强有力的分析框架,特别是针对掺假相关的挑战。
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引用次数: 0
An LC-MS/MS method for simultaneous quantification of pyrotinib, docetaxel and paclitaxel in human plasma and its application to therapeutic drug monitoring LC-MS/MS同时定量人血浆中吡罗替尼、多西他赛和紫杉醇的方法及其在治疗药物监测中的应用。
IF 2.8 3区 医学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-10-29 DOI: 10.1016/j.jchromb.2025.124840
Lingxiao Zhang , Jie Qu , Xinyan Sun , Haiyan Dong , Hongping Yao , Xiaoliang Cheng
Pyrotinib which is a novel irreversible tyrosine kinase inhibitor plus docetaxel or paclitaxel is effective for patients with Her2 positive early or advanced breast cancer including those who failed in first-line treatment. A liquid chromatography tandem mass spectrometry (LC-MS/MS) method was developed and verified for simultaneous quantification of pyrotinib, docetaxel and paclitaxel in human plasma, and applied to therapeutic drug monitoring. A reversed-phase Hypersil GOLD aQ column eluted by a gradient mobile phase composed of water and acetonitrile both containing 0.1 % formic acid under flow rate of 0.3 mL min−1 was used for chromatographic separation. The mass spectrometry was operated in positive electrospray ionization mode, and selective reaction monitoring was applied for quantitative analysis. With imatinib as internal standard, one-step deproteinization approach with acetonitrile was applied to extract analytes and purify specimens. This method was adequately validated according to guidelines in terms of specificity and selectivity, sensitivity, linearity, extraction recovery, matrix effect, precision and accuracy, dilution integration and stability. The validated method was applied to therapeutic drug monitoring for breast cancer patients receiving pyrotinib and taxanes based chemotherapy. The therapeutic drug monitoring results showed that the plasma concentration of pyrotinib, docetaxel and paclitaxel varied significantly among individuals. Therapeutic drug monitoring for pyrotinib, docetaxel and paclitaxel is essential for individualized treatment to ensure efficacy and safety.
Pyrotinib是一种新型的不可逆酪氨酸激酶抑制剂,与多西紫杉醇或紫杉醇联合使用对Her2阳性的早期或晚期乳腺癌患者有效,包括那些在一线治疗失败的患者。建立并验证了同时定量测定人血浆中吡罗替尼、多西他赛和紫杉醇的液相色谱-串联质谱(LC-MS/MS)方法,并将其应用于治疗药物监测。采用反相Hypersil GOLD aQ色谱柱,以含有0.1%甲酸的水和乙腈组成的梯度流动相洗脱,流速为0.3 mL min-1。质谱分析采用正电喷雾电离模式,定量分析采用选择性反应监测。以伊马替尼为内标,采用乙腈一步脱蛋白法提取分析物,纯化样品。本方法在特异性和选择性、灵敏度、线性度、提取回收率、基质效应、精密度和准确度、稀释积分和稳定性等方面均按照指南进行了充分验证。将验证的方法应用于以吡罗替尼和紫杉烷为基础的化疗的乳腺癌患者的治疗药物监测。治疗药物监测结果显示,吡罗替尼、多西他赛和紫杉醇的血药浓度在个体间差异显著。吡罗替尼、多西紫杉醇和紫杉醇的治疗药物监测对于个体化治疗至关重要,以确保疗效和安全性。
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引用次数: 0
Characterization and purification of hypoglycemic components from Rubus suavissimus leaf by affinity ultrafiltration, molecular docking, and macroporous resin 采用亲和超滤、分子对接和大孔树脂等方法纯化水荆叶降血糖成分
IF 2.8 3区 医学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-10-28 DOI: 10.1016/j.jchromb.2025.124830
Xi Hu , Siye Gao , Hancong Wu , Qingyun He , Jianing Liu , Danyue Zhao , Zhenqiang Wu
This study developed an environmentally friendly method for extracting polyphenols and rubusoside from Rubus suavissimus leaves. Under optimal extraction conditions, the contents of polyphenol and rubusoside reached 91.89 ± 2.39 mg/g and 47.03 ± 1.45 mg/g, respectively. The extract was purified by twelve types of macroporous resins, among which the ADS-7 resin had the highest static adsorption and desorption capacities. Optimized purification parameters for ADS-7 resin were determined by static and dynamic adsorption-desorption experiments and found to be: loading flow rate, 3 BV/h; loading concentration, 10 mg/mL; loading volume, 24 BV; elution solvent, 80 % (v/v) ethanol; elution speed, 3 BV/h; and elution volume, 20 BV. After purification, the content of polyphenols and rubusoside increased by 2.63 and 2.32 times, respectively. Kinetic and thermodynamic analyses revealed distinct adsorption mechanisms: polyphenols followed a pseudo-second-order model, whereas rubusoside followed a pseudo-first-order model; both exhibited spontaneous (ΔG < 0) and endothermic (ΔH > 0) physisorption.
Ultrafiltration-assisted centrifugal fractionation combined with UPLC-ESI-qTOF-MS/MS identified eight potential α-glucosidase inhibitors, including quercetin, apigenin, rutin, ellagic acid, kaempferol-3-O-rutinoside, kaempferol, rubusoside, and steviol. Molecular docking simulations revealed the molecular interactions between these compounds and α-glucosidase.
The enriched extract demonstrated enhanced bioactivity, with a 3.35-fold higher α-glucosidase inhibition, and its IC₅₀ values for DPPH and ABTS+ radical scavenging decreased from 142.03 μg/mL to 88.45 μg/mL and from 197.63 μg/mL to 107.63 μg/mL, respectively. These results substantiate the effectiveness of the extraction-purification approach for producing R. suavissimus leaf extracts and suggest their potential application as functional hypoglycemic and antioxidant food ingredients.
本研究建立了一种环境友好的提取水绵叶中多酚和水绵苷的方法。在最佳提取条件下,多酚和冬凌草苷的含量分别为91.89±2.39 mg/g和47.03±1.45 mg/g。采用12种不同的大孔树脂对提取物进行纯化,其中ADS-7树脂的静态吸附和解吸能力最高。通过静态和动态吸附-解吸实验确定了ADS-7树脂的最佳纯化参数:加载流量为3 BV/h;负载浓度,10 mg/mL;装载容积:24bv;洗脱溶剂:80% (v/v)乙醇;洗脱速度:3 BV/h;洗脱体积为20 BV。纯化后,其多酚类和冬冬苷含量分别提高了2.63倍和2.32倍。动力学和热力学分析揭示了不同的吸附机理:多酚类遵循准二级吸附模型,而鲁布索苷类遵循准一级吸附模型;两者均表现自发(ΔG < 0)和吸热(ΔH > 0)物理吸收。超滤辅助离心分离联合UPLC-ESI-qTOF-MS/MS鉴定出8种潜在的α-葡萄糖苷酶抑制剂,包括槲皮素、芹菜素、芦丁、鞣花酸、山奈酚-3- o -芦丁苷、山奈酚、冬冬苷和甜菊醇。分子对接模拟揭示了这些化合物与α-葡萄糖苷酶之间的分子相互作用。强化提取物的生物活性增强,α-葡萄糖苷酶抑制力提高3.35倍,其清除DPPH和ABTS+自由基的IC₅₀值分别从142.03 μg/mL降至88.45 μg/mL和从197.63 μg/mL降至107.63 μg/mL。这些结果证实了提取-纯化法制备山参叶提取物的有效性,并提示其作为功能性降血糖和抗氧化食品原料的潜在应用前景。
{"title":"Characterization and purification of hypoglycemic components from Rubus suavissimus leaf by affinity ultrafiltration, molecular docking, and macroporous resin","authors":"Xi Hu ,&nbsp;Siye Gao ,&nbsp;Hancong Wu ,&nbsp;Qingyun He ,&nbsp;Jianing Liu ,&nbsp;Danyue Zhao ,&nbsp;Zhenqiang Wu","doi":"10.1016/j.jchromb.2025.124830","DOIUrl":"10.1016/j.jchromb.2025.124830","url":null,"abstract":"<div><div>This study developed an environmentally friendly method for extracting polyphenols and rubusoside from <em>Rubus suavissimus</em> leaves. Under optimal extraction conditions, the contents of polyphenol and rubusoside reached 91.89 ± 2.39 mg/g and 47.03 ± 1.45 mg/g, respectively. The extract was purified by twelve types of macroporous resins, among which the ADS-7 resin had the highest static adsorption and desorption capacities. Optimized purification parameters for ADS-7 resin were determined by static and dynamic adsorption-desorption experiments and found to be: loading flow rate, 3 BV/h; loading concentration, 10 mg/mL; loading volume, 24 BV; elution solvent, 80 % (<em>v</em>/v) ethanol; elution speed, 3 BV/h; and elution volume, 20 BV. After purification, the content of polyphenols and rubusoside increased by 2.63 and 2.32 times, respectively. Kinetic and thermodynamic analyses revealed distinct adsorption mechanisms: polyphenols followed a pseudo-second-order model, whereas rubusoside followed a pseudo-first-order model; both exhibited spontaneous (ΔG &lt; 0) and endothermic (ΔH &gt; 0) physisorption.</div><div>Ultrafiltration-assisted centrifugal fractionation combined with UPLC-ESI-qTOF-MS/MS identified eight potential α-glucosidase inhibitors, including quercetin, apigenin, rutin, ellagic acid, kaempferol-3-O-rutinoside, kaempferol, rubusoside, and steviol. Molecular docking simulations revealed the molecular interactions between these compounds and α-glucosidase.</div><div>The enriched extract demonstrated enhanced bioactivity, with a 3.35-fold higher α-glucosidase inhibition, and its IC₅₀ values for DPPH and ABTS<sup>+</sup> radical scavenging decreased from 142.03 μg/mL to 88.45 μg/mL and from 197.63 μg/mL to 107.63 μg/mL, respectively. These results substantiate the effectiveness of the extraction-purification approach for producing <em>R. suavissimus</em> leaf extracts and suggest their potential application as functional hypoglycemic and antioxidant food ingredients.</div></div>","PeriodicalId":348,"journal":{"name":"Journal of Chromatography B","volume":"1268 ","pages":"Article 124830"},"PeriodicalIF":2.8,"publicationDate":"2025-10-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145415411","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
γ-cyclodextrin based metal organic frameworks as micellar electrokinetic chromatography additive for the chiral separation of dansylated amino acids 以γ-环糊精为基础的金属有机骨架胶束电动色谱添加剂用于丹基化氨基酸的手性分离
IF 2.8 3区 医学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-10-28 DOI: 10.1016/j.jchromb.2025.124839
Yan Zhang, Zexi Yu, Xiaotong Zhu, Rongyue Zhang, Nan Li, Min Wang, Juan Qiao
A strategy utilizing oriented γ-cyclodextrin-based metal organic frameworks (γ-CD-MOFs) as chiral additives in micellar electrokinetic chromatography (MEKC) is presented for enhanced enantioseparation of dansylated D,L-amino acids (Dns-D,L-AAs). Its core innovation resides in the fixed orientation of γ-CD within the MOFs structure. This unique characteristic facilitates a shift in chiral recognition from “random interactions” to a “directional and highly efficient recognition” process, thereby substantially enhancing the resolution of chiral separation while overcoming the limitations of free γ-CD, including unstable interactions and poor reproducibility. Systematic optimization of SDS concentration (9.0 mM), γ-CD-MOFs concentration (16.0 mM), and buffer pH (9.5) yielded a maximum resolution (Rs) of 2.2, representing a 50 % improvement over traditional γ-CD. Under these conditions, 14 pairs of Dns-D,L-AAs achieved baseline separation, with 4 additional pairs showing partial separation. Quantitative validation for D,L-methionine (D,L-Met) demonstrated excellent linearity (19.8–1500 μM, r2 = 0.999), low limits of detection (6.6 μM) and quantitation (19.8 μM), and high stability (relative standard deviations <5 %). Application to rat plasma samples revealed peak concentration (Cmax) of D,L-Met at 90 min post-injection, highlighting its utility in pharmacokinetic studies of amino acid-derived prodrugs (e.g., S-adenosylmethionine). This work introduces oriented γ-CD-MOFs as a transformative chiral additive in MEKC, offering superior selectivity and reproducibility for pharmaceutical and biomedical analyses.
提出了一种利用定向γ-环糊精基金属有机骨架(γ-CD-MOFs)作为胶束电动色谱(MEKC)手性添加剂的策略,以增强丹化D, l -氨基酸(dn -D,L-AAs)的对端分离。其核心创新在于γ-CD在mof结构中的固定取向。这种独特的特性有助于手性识别从“随机相互作用”向“定向和高效识别”过程的转变,从而大大提高了手性分离的分辨率,同时克服了游离γ-CD的局限性,包括相互作用不稳定和再现性差。系统优化SDS浓度(9.0 mM)、γ-CD- mof浓度(16.0 mM)和缓冲液pH(9.5),最大分辨率(Rs)为2.2,比传统的γ-CD提高了50%。在这些条件下,14对Dns-D, l - aa达到基线分离,另外4对部分分离。定量验证结果表明,D, l -蛋氨酸(D,L-Met)具有良好的线性关系(19.8 ~ 1500 μM, r2 = 0.999),低检出限(6.6 μM)和定量限(19.8 μM),高稳定性(相对标准偏差<; 5%)。应用于大鼠血浆样品显示,注射后90分钟D,L-Met的峰值浓度(Cmax),突出了其在氨基酸衍生的前药(如s -腺苷蛋氨酸)的药代动力学研究中的应用。本研究介绍了定向γ- cd - mof作为MEKC中的一种变革性手性添加剂,为药物和生物医学分析提供了优越的选择性和可重复性。
{"title":"γ-cyclodextrin based metal organic frameworks as micellar electrokinetic chromatography additive for the chiral separation of dansylated amino acids","authors":"Yan Zhang,&nbsp;Zexi Yu,&nbsp;Xiaotong Zhu,&nbsp;Rongyue Zhang,&nbsp;Nan Li,&nbsp;Min Wang,&nbsp;Juan Qiao","doi":"10.1016/j.jchromb.2025.124839","DOIUrl":"10.1016/j.jchromb.2025.124839","url":null,"abstract":"<div><div>A strategy utilizing oriented γ-cyclodextrin-based metal organic frameworks (γ-CD-MOFs) as chiral additives in micellar electrokinetic chromatography (MEKC) is presented for enhanced enantioseparation of dansylated D,L-amino acids (Dns-D,L-AAs). Its core innovation resides in the fixed orientation of γ-CD within the MOFs structure. This unique characteristic facilitates a shift in chiral recognition from “random interactions” to a “directional and highly efficient recognition” process, thereby substantially enhancing the resolution of chiral separation while overcoming the limitations of free γ-CD, including unstable interactions and poor reproducibility. Systematic optimization of SDS concentration (9.0 mM), γ-CD-MOFs concentration (16.0 mM), and buffer pH (9.5) yielded a maximum resolution (<em>R</em><sub>s</sub>) of 2.2, representing a 50 % improvement over traditional γ-CD. Under these conditions, 14 pairs of Dns-D,L-AAs achieved baseline separation, with 4 additional pairs showing partial separation. Quantitative validation for D,L-methionine (D,L-Met) demonstrated excellent linearity (19.8–1500 μM, r<sup>2</sup> = 0.999), low limits of detection (6.6 μM) and quantitation (19.8 μM), and high stability (relative standard deviations &lt;5 %). Application to rat plasma samples revealed peak concentration (C<sub>max</sub>) of D,L-Met at 90 min post-injection, highlighting its utility in pharmacokinetic studies of amino acid-derived prodrugs (e.g., S-adenosylmethionine). This work introduces oriented γ-CD-MOFs as a transformative chiral additive in MEKC, offering superior selectivity and reproducibility for pharmaceutical and biomedical analyses.</div></div>","PeriodicalId":348,"journal":{"name":"Journal of Chromatography B","volume":"1268 ","pages":"Article 124839"},"PeriodicalIF":2.8,"publicationDate":"2025-10-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145415410","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Impact of Preprocessing and data analysis strategies on metabolite annotation in biological samples: A mass spectrometry-based metabolomics study using feature-based molecular networking 预处理和数据分析策略对生物样品中代谢物注释的影响:使用基于特征的分子网络进行基于质谱的代谢组学研究
IF 2.8 3区 医学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-10-28 DOI: 10.1016/j.jchromb.2025.124828
Qinyu Xiao , Jiamin Yang , Jianjun Xie , Qing Liu , Hongbo Huang , Yiwen Tao , Bo Ding
Metabolomics workflows involve multiple complex steps including sample collection, storage, preparation, metabolite extraction, analytical platforms selection, data acquisition and interpretation. Each step may introduce variability that affects the quality and reliability of metabolomic data. To systematically investigate the effects of these factors on metabolomics outcomes, plasma samples from four different anatomical sites of colon cancer patients were analyzed using Liquid chromatography- Quadrupole-Exactive Orbitrap mass spectrometry (LC-Q-Exactive Orbitrap MS) for untargeted metabolomics. Response surface methodology was employed to optimize the ultrasound-assisted extraction conditions during sample pretreatment. Data analysis strategies were systematically evaluated, including Feature-Based Molecular Networking (FBMN) construction parameters and comparative assessment of different FBMN platforms for metabolite annotation. The optimized extraction conditions were determined as 300 % methanol concentration, sample freezing at −20 °C for 40 min, followed by ultrasonication for 5 min. Sample standardization protocols requiring single-use portioning and limiting freeze-thaw cycles to ≤2–3 cycles were identified as essential for reliable biomarker discovery and therapeutic mechanism exploration. Optimal FBMN construction parameters comprised a 25-min gradient elution time, 50 mm chromatographic column length, and high sample concentration. Comparative evaluation of Global Natural Products Social Molecular Networking (GNPS) and MZmine implementations of FBMN revealed that GNPS was recommended for studies prioritizing comprehensive annotation coverage and discovery-oriented metabolomics, while MZmine was preferred for method development, or applications requiring local processing without external data upload. This study demonstrated that preprocessing and data analysis strategies were critical determinants of data quality in untargeted plasma metabolomics. The findings provided evidence-based recommendations for experimental design, storage conditions, and data handling procedures that can guide protocol standardization and minimize undesired analytical variation in metabolomics studies.
代谢组学工作流程涉及多个复杂步骤,包括样品收集、储存、制备、代谢物提取、分析平台选择、数据采集和解释。每一步都可能引入可变性,影响代谢组学数据的质量和可靠性。为了系统地研究这些因素对代谢组学结果的影响,我们使用液相色谱-四极柱- exactive Orbitrap质谱(LC-Q-Exactive Orbitrap MS)对来自结肠癌患者四个不同解剖部位的血浆样本进行了非靶向代谢组学分析。在样品预处理过程中,采用响应面法优化超声辅助提取条件。系统评估数据分析策略,包括基于特征的分子网络(FBMN)构建参数和不同FBMN平台代谢物注释的比较评估。最佳提取条件为:甲醇浓度为300%,样品在- 20℃冷冻40 min,超声处理5 min。样品标准化方案要求一次性分割,并将冻融周期限制在≤2-3个周期,这对于可靠的生物标志物发现和治疗机制探索至关重要。最佳FBMN构建参数为25 min梯度洗脱时间、50 mm色谱柱长度和高样品浓度。对全球天然产物社会分子网络(Global Natural Products Social Molecular network, GNPS)和MZmine实现FBMN的比较评估表明,GNPS被推荐用于优先考虑综合注释覆盖和以发现为导向的代谢组学的研究,而MZmine更适合于方法开发或需要本地处理而不需要外部数据上传的应用。该研究表明,预处理和数据分析策略是非靶向血浆代谢组学数据质量的关键决定因素。这些发现为实验设计、储存条件和数据处理程序提供了基于证据的建议,可以指导方案标准化,并最大限度地减少代谢组学研究中不希望出现的分析差异。
{"title":"Impact of Preprocessing and data analysis strategies on metabolite annotation in biological samples: A mass spectrometry-based metabolomics study using feature-based molecular networking","authors":"Qinyu Xiao ,&nbsp;Jiamin Yang ,&nbsp;Jianjun Xie ,&nbsp;Qing Liu ,&nbsp;Hongbo Huang ,&nbsp;Yiwen Tao ,&nbsp;Bo Ding","doi":"10.1016/j.jchromb.2025.124828","DOIUrl":"10.1016/j.jchromb.2025.124828","url":null,"abstract":"<div><div>Metabolomics workflows involve multiple complex steps including sample collection, storage, preparation, metabolite extraction, analytical platforms selection, data acquisition and interpretation. Each step may introduce variability that affects the quality and reliability of metabolomic data. To systematically investigate the effects of these factors on metabolomics outcomes, plasma samples from four different anatomical sites of colon cancer patients were analyzed using Liquid chromatography- Quadrupole-Exactive Orbitrap mass spectrometry (LC-Q-Exactive Orbitrap MS) for untargeted metabolomics. Response surface methodology was employed to optimize the ultrasound-assisted extraction conditions during sample pretreatment. Data analysis strategies were systematically evaluated, including Feature-Based Molecular Networking (FBMN) construction parameters and comparative assessment of different FBMN platforms for metabolite annotation. The optimized extraction conditions were determined as 300 % methanol concentration, sample freezing at −20 °C for 40 min, followed by ultrasonication for 5 min. Sample standardization protocols requiring single-use portioning and limiting freeze-thaw cycles to ≤2–3 cycles were identified as essential for reliable biomarker discovery and therapeutic mechanism exploration. Optimal FBMN construction parameters comprised a 25-min gradient elution time, 50 mm chromatographic column length, and high sample concentration. Comparative evaluation of Global Natural Products Social Molecular Networking (GNPS) and MZmine implementations of FBMN revealed that GNPS was recommended for studies prioritizing comprehensive annotation coverage and discovery-oriented metabolomics, while MZmine was preferred for method development, or applications requiring local processing without external data upload. This study demonstrated that preprocessing and data analysis strategies were critical determinants of data quality in untargeted plasma metabolomics. The findings provided evidence-based recommendations for experimental design, storage conditions, and data handling procedures that can guide protocol standardization and minimize undesired analytical variation in metabolomics studies.</div></div>","PeriodicalId":348,"journal":{"name":"Journal of Chromatography B","volume":"1268 ","pages":"Article 124828"},"PeriodicalIF":2.8,"publicationDate":"2025-10-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145415359","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A pharmacokinetic study on punicalagin following oral and intravenous administration to the rat using UPLC-MS/MS 采用超高效液相色谱-质谱联用技术对大鼠口服和静脉注射槟榔苷的药代动力学进行研究
IF 2.8 3区 医学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-10-26 DOI: 10.1016/j.jchromb.2025.124837
Zhanying Chang , Guihua Liu , Zixin Chen , Pengxia Yao , Xiaoli Gao
Punicalagin (PUN) is a high abundant ellagitannin and the principal bioactive component existing in Pomegranate (Punica granatum L.) peel, juice, and extract, yet its absorption, bioavailability and pharmacokinetic parameters have not been adequately investigated after oral administration in vivo model. Thus, this study developed a reproducible UPLC-MS/MS method (linear range: 0.125–70 μg/mL; LLOQ: 0.125 μg/mL) to characterize PUN pharmacokinetic profile in Sprague-Dawley rats. After intravenous (iv, 10 mg/kg) administration, PUN exhibited slow elimination (iv, t1/2 = 6.45 ± 2.11 h) and plasma-restricted distribution (Vd = 0.94 ± 0.23 L/kg). By intragastric route (ig, 100–400 mg/kg), PUN showed dose-dependent absorption (Tmax ≈ 2 h), critically low absolute bioavailability (3.22–5.38%) and extensive tissue distribution (Vd = 14.0–44.5 L/kg). The area under the plasma concentration-time curve from time zero to last sampling time (AUC0-t) and AUC0-∞ (from time zero to infinity) were 30.0–211.5, 32.0–213.8 μg*h/mL. The Cmax of PUN in plasma samples was ranged from 1.91 to 34.8 μg/mL. The dose proportionality study demonstrated the Cmax and AUC0-t values were positively correlated with ig doses, with R2 (95% CI) being 0.858 (0.770–0.959) for Cmax and 0.904 (0.847–0.956). Overall, the comprehensively detailed pharmacokinetic parameters of pure PUN have been determined, providing valuable information for preclinical study.
Punicalagin (PUN)是一种含量较高的鞣花单宁,是石榴(Punica granatum L.)果皮、果汁和提取物中存在的主要生物活性成分,但经体内模型口服后,其吸收、生物利用度和药代动力学参数尚未得到充分研究。因此,本研究建立了一种可重复的UPLC-MS/MS方法(线性范围:0.125 ~ 70 μg/mL;下限:0.125 μg/mL)来表征双关醇在Sprague-Dawley大鼠体内的药动学特征。经静脉(iv, 10 mg/kg)给药后,PUN消除缓慢(iv, t1/2 = 6.45±2.11 h),血浆分布受限(Vd = 0.94±0.23 L/kg)。经灌胃(ig, 100 ~ 400 mg/kg), PUN具有剂量依赖性吸收(Tmax≈2 h),极低的绝对生物利用度(3.22 ~ 5.38%)和广泛的组织分布(Vd = 14.0 ~ 44.5 L/kg)。从时间0到最后一次采样时间的血浆浓度-时间曲线下面积(AUC0-t)和AUC0-∞(从时间0到无穷远)分别为30.0 ~ 211.5、32.0 ~ 213.8 μg*h/mL。血浆样品中PUN的Cmax为1.91 ~ 34.8 μg/mL。剂量比例研究表明,Cmax和AUC0-t值与大剂量呈正相关,Cmax和AUC0-t值的R2 (95% CI)分别为0.858(0.77 ~ 0.959)和0.904(0.847 ~ 0.956)。总之,我们全面详细地确定了纯双关醇的药代动力学参数,为临床前研究提供了有价值的信息。
{"title":"A pharmacokinetic study on punicalagin following oral and intravenous administration to the rat using UPLC-MS/MS","authors":"Zhanying Chang ,&nbsp;Guihua Liu ,&nbsp;Zixin Chen ,&nbsp;Pengxia Yao ,&nbsp;Xiaoli Gao","doi":"10.1016/j.jchromb.2025.124837","DOIUrl":"10.1016/j.jchromb.2025.124837","url":null,"abstract":"<div><div>Punicalagin (PUN) is a high abundant ellagitannin and the principal bioactive component existing in Pomegranate (<em>Punica granatum</em> L.) peel, juice, and extract, yet its absorption, bioavailability and pharmacokinetic parameters have not been adequately investigated after oral administration <em>in vivo</em> model. Thus, this study developed a reproducible UPLC-MS/MS method (linear range: 0.125–70 μg/mL; LLOQ: 0.125 μg/mL) to characterize PUN pharmacokinetic profile in Sprague-Dawley rats. After intravenous (iv, 10 mg/kg) administration, PUN exhibited slow elimination (iv, t<sub>1/2</sub> = 6.45 ± 2.11 h) and plasma-restricted distribution (V<sub>d</sub> = 0.94 ± 0.23 L/kg). By intragastric route (ig, 100–400 mg/kg), PUN showed dose-dependent absorption (T<sub>max</sub> ≈ 2 h), critically low absolute bioavailability (3.22–5.38%) and extensive tissue distribution (V<sub>d</sub> = 14.0–44.5 L/kg). The area under the plasma concentration-time curve from time zero to last sampling time (AUC<sub>0-t</sub>) and AUC<sub>0-∞</sub> (from time zero to infinity) were 30.0–211.5, 32.0–213.8 μg*h/mL. The C<sub>max</sub> of PUN in plasma samples was ranged from 1.91 to 34.8 μg/mL. The dose proportionality study demonstrated the C<sub>max</sub> and AUC<sub>0-t</sub> values were positively correlated with ig doses, with R<sup>2</sup> (95% CI) being 0.858 (0.770–0.959) for C<sub>max</sub> and 0.904 (0.847–0.956). Overall, the comprehensively detailed pharmacokinetic parameters of pure PUN have been determined, providing valuable information for preclinical study.</div></div>","PeriodicalId":348,"journal":{"name":"Journal of Chromatography B","volume":"1267 ","pages":"Article 124837"},"PeriodicalIF":2.8,"publicationDate":"2025-10-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145412459","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Validation of a highly sensitive assay for the determination of rivastigmine in human plasma for pharmacokinetic studies. 用于药代动力学研究的人血浆中利瓦斯汀高灵敏度测定法的验证。
IF 2.8 3区 医学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-10-26 DOI: 10.1016/j.jchromb.2025.124838
Maksim Dolov , Igor Rodin
A fast and highly sensitive LC–MS/MS method has been developed and validated for measuring rivastigmine levels in human plasma. The extraction of rivastigmine from plasma was performed using a simple and quick protein precipitation technique (PPT). The internal standard used was atazanavir-d5. Chromatographic separation was achieved using a YMC-Triart C18 column, followed by detection with mass spectrometry. The mass transitions monitored were m/z 251.1 > 206.0 for rivastigmine, and m/z 710.5 > 168.1 for atazanavir-d5. This method involves rapid plasma extraction, straightforward gradient chromatography, and mass spectrometric detection, allowing for the detection of rivastigmine at sub-nanogram per milliliter levels. The method was validated over a linear range of 25 to 5000 pg/ml, with a correlation coefficient of at least 0.9980. Both intra- and inter-day precision and accuracy were within 15 %. The overall recovery rates for rivastigmine and atazanavir-d5 were close to 100 %. The total analysis time per sample was only 3 min. This method was successfully applied to determine the pharmacokinetic parameters of rivastigmine after a single oral dose of 1.5 mg (capsules) in 26 healthy volunteers.
建立了一种快速、高灵敏度的LC-MS /MS方法,用于测定人血浆中伐斯汀的含量。采用简单快速蛋白沉淀技术(PPT)从血浆中提取利瓦斯汀。内标为atazanvir -d5。采用YMC-Triart C18色谱柱进行色谱分离,然后采用质谱法进行检测。监测到的质量转移为:瑞瓦斯汀为m/z 251.1 > 206.0,阿扎那韦-d5为m/z 710.5 > 168.1。该方法包括快速血浆提取,直接梯度色谱和质谱检测,允许检测亚纳克/毫升水平的利瓦斯汀。在25 ~ 5000 pg/ml的线性范围内,相关系数至少为0.9980。日内、日间的精密度和准确度均在15%以内。瑞瓦斯汀和阿扎那韦-d5的总回收率接近100%。每个样品的总分析时间仅为3分钟。该方法成功地测定了26名健康志愿者单次口服1.5 mg(胶囊)利瓦斯汀的药动学参数。
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引用次数: 0
Development and validation of an LC-MS/MS method for Tirzepatide, a dual GIP/GLP-1 receptor agonist, in rat plasma for application to a pharmacokinetic study 大鼠血浆中双GIP/GLP-1受体激动剂tizepatide的LC-MS/MS方法的开发和验证,用于药代动力学研究。
IF 2.8 3区 医学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-10-26 DOI: 10.1016/j.jchromb.2025.124836
Hae-In Choi , Hyeon-Cheol Jeong , Jong-Woo Jeong , Jaeyoung Lee , Da Hae Kim , Kyong-Cheol Ko , Yoon-Jee Chae , Kyeong-Ryoon Lee
A sensitive and rapid liquid chromatography-tandem mass spectrometry (LC-MS/MS) method was developed and validated for the quantification of tirzepatide, a dual agonist of glucose-dependent insulinotropic polypeptide (GIP) and glucagon-like peptide-1 (GLP-1) receptors in rat plasma. Tirzepatide was extracted from rat plasma by protein precipitation using methanol. Chromatographic separation was achieved using a peptide C18 column with gradient elution of water and acetonitrile containing 0.1 % formic acid. Mass spectrometric detection was performed in positive electrospray ionization mode using multiple reaction monitoring with transitions of m/z 1204.4 → 1473.6 for tirzepatide and m/z 1029.4 → 1238.4 for the internal standard, semaglutide. The developed method exhibited good linearity over a concentration range of 1–1000 ng/mL (r2 > 0.99). Intra- and inter-day accuracy (−4.324–5.057 %) and precision (5.250–9.000 %) met the regulatory criteria at all quality control levels, and were stable under various plasma handling and storage conditions. The validated method was successfully applied to a pharmacokinetic study in rats following the intravenous and subcutaneous injection of tirzepatide at 0.3 mg/kg. The terminal half-lives were 10.04 h and 9.803 h after intravenous and subcutaneous administration, respectively, indicating comparable elimination profiles. The bioavailability following subcutaneous dosing was estimated to be approximately 62.38 %. These findings highlight the robustness and applicability of the developed method, suggesting its potential utility for the quantitative analysis of other peptide therapeutics with structures or mechanisms of action similar to those of tirzepatide.
建立了一种灵敏、快速的液相色谱-串联质谱(LC-MS/MS)方法,用于定量大鼠血浆中葡萄糖依赖性胰岛素性多肽(GIP)和胰高血糖素样肽-1 (GLP-1)受体双激动剂替西肽。采用甲醇蛋白沉淀法从大鼠血浆中提取替西帕肽。色谱分离采用肽C18柱,梯度洗脱水和含有0.1%甲酸的乙腈。质谱检测采用正电喷雾电离模式,采用多重反应监测,替西肽为m/z 1204.4→1473.6,内标semaglutide为m/z 1029.4→1238.4。该方法在1 ~ 1000 ng/mL (r2 > 0.99)的浓度范围内线性良好。日内和日间准确度(-4.324- 5.057%)和精密度(5.250-9.000 %)均符合所有质量控制水平的监管标准,且在各种血浆处理和储存条件下均稳定。该方法成功应用于0.3 mg/kg替西帕肽静脉注射和皮下注射后大鼠体内的药代动力学研究。静脉和皮下给药后的终末半衰期分别为10.04 h和9.803 h,表明消除情况相当。皮下给药后的生物利用度估计约为62.38%。这些发现突出了所开发方法的稳健性和适用性,表明其对其他结构或作用机制类似于替西肽的肽疗法的定量分析的潜在效用。
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引用次数: 0
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Journal of Chromatography B
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