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Integrated metabolomics and network pharmacology reveal the procoagulant mechanisms of Cirsium setosum extracts 代谢组学与网络药理学的整合揭示了冷杉提取物的促凝血机制
IF 2.8 3区 医学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-10-09 DOI: 10.1016/j.jchromb.2024.124335
Xiao Yang , Yingjin Wang , Shuangyi Gong , Tingjian Xiong , Lihang Xie
As a medicinal plant, Cirsium setosum has excellent procoagulant effects and has long been used as a cure for hemoptysis, epistaxis, uremia and metrorrhagia caused by blood heat. However, the key medicinal part of C. setosum, as well as the biologically active substances that play a major role, are not known. In this study, the aboveground, underground and whole grass portions of C. setosum were subjected to a coagulation comparison experiment to determine the primary active procoagulant compounds. The main active procoagulant compounds of C. setosum were then screened using a comparative metabolomics analysis between aboveground and underground. Network pharmacology analysis was used to construct the “active ingredient-disease target-pathway” network. Finally, molecular docking was used to verify the binding ability and affinity between the key active ingredients obtained from the screening and the targets. The results indicated that the aboveground part of C. setosum could significantly shorten activated partial thromboplastin time (APTT) and that this part exerts substantial procoagulant effects. The total phenol, total flavonoid and total alkaloid content of the aboveground part was measured to be higher than those of the underground part and whole grass. Furthermore, comparative metabolomics analysis as well as the Traditional Chinese Medicine Systems Pharmacology Database and Analysis Platform (TCMSP) database and literature search screening yielded 10 active substances, including naringenin, guanine, 2,4-di-tert-butylphenol, calycosin-7-O-beta-D-glucoside, flavone, vitexin, and tiliroside, which may be related to the coagulation-promoting properties of C. setosum and its therapeutic effects on coagulation-related disorders. Network pharmacological analysis revealed that C. setosum may exert procoagulant effects mainly through tiliroside, calycosin-7-O-beta-D-glucoside, and flavone, which act on key target proteins, such as SRC, PRKACA, EGFR, AKT1, MAPK3, and GSK3B. In summary, C. setosum exerts its procoagulant and therapeutic effects on coagulation-related diseases through multiple compounds, targets, and pathways.
作为一种药用植物,鸡矢藤具有很好的促凝血作用,长期以来一直被用作治疗血热引起的咯血、衄血、尿毒症和血崩。然而,C. setosum 的主要药用部分以及起主要作用的生物活性物质尚不清楚。本研究对 C. setosum 的地上部分、地下部分和全草部分进行了凝血对比实验,以确定主要的活性促凝化合物。然后利用代谢组学比较分析法筛选出 C. setosum 的主要活性促凝血化合物。利用网络药理学分析构建了 "活性成分-疾病靶点-途径 "网络。最后,利用分子对接验证了筛选得到的关键活性成分与靶标的结合能力和亲和力。结果表明,C. setosum 的地上部分能显著缩短活化部分凝血活酶时间(APTT),该部分具有很强的促凝血作用。经测定,地上部分的总酚、总黄酮和总生物碱含量均高于地下部分和全草。此外,比较代谢组学分析以及中药系统药理学数据库和分析平台(TCMSP)数据库和文献检索筛选得出了 10 种活性物质,包括柚皮苷、鸟嘌呤、2,4-二叔丁基苯酚、钙苷-7-O-beta-D-葡萄糖苷、黄酮、牡荆素和桔梗苷,这些物质可能与茜草的促凝血特性及其对凝血相关疾病的治疗作用有关。网络药理学分析表明,C. setosum 可能主要通过 tiliroside、calycosin-7-O-beta-D-glucoside 和 flavone 发挥促凝作用,这些物质作用于关键的靶蛋白,如 SRC、PRKACA、EGFR、AKT1、MAPK3 和 GSK3B。总之,C. setosum 通过多种化合物、靶点和途径对凝血相关疾病发挥促凝和治疗作用。
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引用次数: 0
Generation of affinity maps for thiazolidinediones with human serum albumin using affinity microcolumns. II. Effects of advanced glycation end products on multisite drug binding 利用亲和微柱生成噻唑烷二酮类药物与人血清白蛋白的亲和图。II.高级糖化终产物对多位点药物结合的影响
IF 2.8 3区 医学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-10-09 DOI: 10.1016/j.jchromb.2024.124333
Sadia Sharmeen, Ashley G. Woolfork, David S. Hage
Multisite protein interactions by the thiazolidinedione-class drugs pioglitazone and rosiglitazone were examined by using high-performance affinity microcolumns that contained normal human serum albumin (HSA) vs HSA that had been modified to form advanced glycation end products by glyoxal (Go) or methylglyoxal (MGo). The results were used to generate an affinity map for these drugs at several key regions on HSA. Strong binding (∼105 M−1) by these drugs was seen at both Sudlow sites I and II. About a 50 % decrease in the affinities at Sudlow site II was observed for pioglitazone for Go-modified HSA, while either a 47 % decrease or 1.6-fold increase in affinity was seen for MGo-modified HSA, depending on the extent of modification. The binding affinity for rosiglitazone at Sudlow site II had a 40–83 % decrease for Go-modified HSA and either a non-significant change or 1.4-fold increase for MGo-modified HSA. At Sudlow site I, pioglitazone gave a 41 % decrease in affinity for either Go or MGo-modified HSA, and for rosiglitazone up to a 55 % decrease or 1.3-fold increase in affinity was noted. Positive allosteric effects were seen by these drugs with the tamoxifen site of HSA, and neither drug had any notable binding at the digitoxin site for the normal or modified forms of HSA. Rosiglitazone also had weak interactions at a site in subdomain IB, which increased in affinity by up to 5.0-fold with the Go- or MGo-modified HSA. This study illustrated how affinity microcolumns can be used to provide a detailed analysis of solute-protein systems that involve complex interactions. The data obtained should also be valuable in providing a better understanding of how drug interactions with HSA and other proteins can be altered by modifications of these binding agents in diseases such as diabetes.
使用含有正常人血清白蛋白(HSA)和经乙二醛(Go)或甲基乙二醛(MGo)修饰形成高级糖化终产物的 HSA 的高性能亲和微柱来检测噻唑烷二酮类药物吡格列酮和罗格列酮的多位点蛋白质相互作用。研究结果用于生成这些药物在 HSA 上几个关键区域的亲和力图谱。这些药物在 Sudlow 位点 I 和 II 均有很强的结合力(∼105 M-1)。根据修饰程度的不同,吡格列酮与 Go 修饰的 HSA 在 Sudlow 位点 II 的亲和力下降了约 50%,而与 MGo 修饰的 HSA 的亲和力则下降了 47%或增加了 1.6 倍。在 Sudlow 位点 II,罗格列酮与 Go 修饰的 HSA 的结合亲和力下降了 40-83%,而与 MGo 修饰的 HSA 的结合亲和力变化不大或增加了 1.4 倍。在 Sudlow 位点 I,吡格列酮对 Go 或 MGo 修饰的 HSA 的亲和力降低了 41%,对罗格列酮的亲和力降低了 55%或增加了 1.3 倍。这些药物与 HSA 的他莫昔芬位点产生了积极的异构效应,而这两种药物与正常或改良形式的 HSA 的地高辛位点都没有明显的结合。罗格列酮在亚域 IB 的一个位点上也有微弱的相互作用,与 Go- 或 MGo-修饰的 HSA 的亲和力增加了 5.0 倍。这项研究说明了如何利用亲和微柱来详细分析涉及复杂相互作用的溶质-蛋白质系统。获得的数据对于更好地理解药物与 HSA 及其他蛋白质的相互作用如何通过修饰这些结合剂而改变(如糖尿病)也很有价值。
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引用次数: 0
Serum metabolome alterations in hyperhomocysteinemia based on targeted and non-targeted MS-platforms 基于靶向和非靶向 MS 平台的高同型半胱氨酸血症血清代谢组变化
IF 2.8 3区 医学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-10-04 DOI: 10.1016/j.jchromb.2024.124336
Xinshu Zhao , Xiaowei Liu , Liyan Liu , Rui Chen

Background and aims

Hyperhomocysteinemia (Hhcy) is a pathological condition marked by increased level of homocysteine and serves as an independent risk factor for a range of diseases including cardiovascular diseases and Alzheimer’s disease. This study aims to examine alterations in Hhcy-related metabolites using serum metabolomics and unravel the distinct metabolic pathways involved, thereby offering a theoretical foundation for the early prevention and treatment of Hhcy.

Methods

Serum samples were collected from 56 individuals with Hhcy and 44 healthy controls. Metabolic alterations in Hhcy were assessed through multi-platform serum metabolomics analyses. Through multivariate statistical analysis and regression modeling, distinct metabolites in the serum were identified, and various metabolic pathways associated with Hhcy were investigated.

Results

Our findings revealed 21 significant different metabolites that distinguished Hhcy from healthy controls. These varied metabolites primarily comprised 10 organic acids, 4 amino acids, 2 fatty acids, and 5 other metabolites. The key differential metabolic pathways identified were the TCA cycle, pyruvate metabolism, arginine biosynthesis, as well as alanine, aspartate, and glutamate metabolism.

Conclusions

This study elucidated the variances in metabolic profiles between Hhcy and healthy control groups, highlighting distinct metabolic pathways that may help explain the etiology of Hhcy. These findings offer valuable insights to address the knowledge gaps related to the metabolic alterations associated with Hhcy.
背景和目的:高同型半胱氨酸血症(Hhcy)是一种以同型半胱氨酸水平升高为特征的病理状态,是心血管疾病和阿尔茨海默病等一系列疾病的独立危险因素。本研究旨在利用血清代谢组学研究 Hhcy 相关代谢物的变化,并揭示其中所涉及的不同代谢途径,从而为早期预防和治疗 Hhcy 提供理论依据:收集了 56 名 Hhcy 患者和 44 名健康对照者的血清样本。方法:采集 56 名 Hhcy 患者和 44 名健康对照者的血清样本,通过多平台血清代谢组学分析评估 Hhcy 患者的代谢改变。通过多变量统计分析和回归建模,确定了血清中不同的代谢物,并研究了与Hhcy相关的各种代谢途径:结果:我们的研究结果表明,有 21 种不同的代谢物将 Hhcy 与健康对照组区分开来。这些不同的代谢物主要包括 10 种有机酸、4 种氨基酸、2 种脂肪酸和 5 种其他代谢物。发现的主要差异代谢途径包括 TCA 循环、丙酮酸代谢、精氨酸生物合成以及丙氨酸、天门冬氨酸和谷氨酸代谢:本研究阐明了 Hhcy 和健康对照组之间代谢特征的差异,突出了不同的代谢途径,这可能有助于解释 Hhcy 的病因。这些发现为填补与 Hhcy 相关的代谢改变方面的知识空白提供了宝贵的见解。
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引用次数: 0
Efficient purification of soluble receptor for advanced glycation end-products from Sus scrofa lung tissue and synthesis of its binding ligand, glycated bovine serum albumin 从鼠肺组织中高效纯化可溶性高级糖化终产物受体,并合成其结合配体--糖化牛血清白蛋白。
IF 2.8 3区 医学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-09-30 DOI: 10.1016/j.jchromb.2024.124326
Tamás Madarász, Miklós Nyitrai, Edina Szabó-Meleg
A receptor for advanced glycation end products (RAGE) has emerged as a crucial player in various pathological conditions due to its involvement in inflammation and cellular dysfunction. Its soluble isoform, sRAGE, has garnered significant attention for its competitive inhibitory effects and potential therapeutic applications. However, obtaining sRAGE with appropriate glycosylation patterns for binding to glycated proteins has been challenging, often requiring costly expression systems. Here, we present a novel approach for producing and purifying sRAGE from Sus scrofa lungs, bypassing the need for expensive expression systems. Previous protocols for sRAGE extraction faced reproducibility issues due to high viscosity and haemoglobin content of the solution. To address this, we developed a method for selective haemoglobin precipitation using a zinc-containing buffer, enabling purification via various chromatographic methods. Through a combination of chromatographic techniques, we obtained sRAGE in suitable purity, identified using HPLC-MS/MS. Additionally, producing glycated proteins for RAGE receptor activation often involved lengthy protocols or inadequate separation from reactants. Thus, we devised a rapid method for producing and purifying pure BSA glycated with ribose, addressing a critical gap in the field. Functional studies, conducted using Native PAGE, demonstrated the capability of purified proteins to bind to each other.
高级糖化终产物受体(RAGE)由于参与炎症和细胞功能障碍,已成为各种病理情况中的关键角色。它的可溶性异构体 sRAGE 因其竞争性抑制作用和潜在的治疗应用而备受关注。然而,要获得与糖化蛋白结合的具有适当糖基化模式的 sRAGE 一直是个挑战,往往需要昂贵的表达系统。在这里,我们提出了一种从鼠肺中生产和纯化 sRAGE 的新方法,从而避免了对昂贵的表达系统的需求。以前的 sRAGE 提取方案由于溶液的高粘度和血红蛋白含量而面临可重复性问题。为了解决这个问题,我们开发了一种使用含锌缓冲液选择性沉淀血红蛋白的方法,从而可以通过各种色谱方法进行纯化。通过综合使用各种色谱技术,我们获得了纯度合适的 sRAGE,并使用 HPLC-MS/MS 进行了鉴定。此外,生产用于激活 RAGE 受体的糖化蛋白质通常需要冗长的程序,或与反应物分离不充分。因此,我们设计了一种快速生产和纯化用核糖糖化的纯 BSA 的方法,填补了该领域的一个重要空白。使用 Native PAGE 进行的功能研究表明,纯化的蛋白质能够相互结合。
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引用次数: 0
Integration of UPLC-MS/MS-based metabolomics and desorption electrospray ionization-mass spectrometry imaging reveals that Shouhui Tongbian Capsule alleviates slow transit constipation by regulating bile acid metabolism 基于UPLC-MS/MS的代谢组学和解吸电喷雾电离-质谱成像技术相结合,揭示了寿辉通便胶囊通过调节胆汁酸代谢缓解慢传输型便秘。
IF 2.8 3区 医学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-09-30 DOI: 10.1016/j.jchromb.2024.124331
Na Zhang , Dong Guo , Na Guo , Dawei Yang , Han Yan , Jingchun Yao , He Xiao , Mingguo Shao , Yongxia Guan , Guimin Zhang
Slow transit constipation (STC) is a common intestinal disorder. Some studies reported that Shouhui Tongbian Capsule (SHTB) can effectively mitigate STC symptoms. A detailed understanding of the changes in the endogenous metabolite profile of rats is crucial for a more accurate comprehension of the molecular pathological characteristics of SHTB in treating STC. In the present study, a method integrating metabolomics based on Ultra-performance liquid chromatography-tandem mass spectrometry (UPLC-MS/MS) and Desorption electrospray ionization (DESI)-mass spectrometry imaging (MSI) was proposed to investigate serum, feces and colon tissue metabolic alterations of STC rats induced by diphenoxylate and the effect of SHTB treatment on metabolism. Then, Enzyme-linked immunosorbent assay (ELISA) and Western blot (WB) analysis for verifying the potential mechanism of SHTB in treating STC. As a result, we first indicated that SHTB significantly improved intestinal peristalsis and low fecal water content in STC rats. Furthermore, after treatment with SHTB, the thickness of muscle layers was increased, demonstrated SHTB’s effectiveness in reducing intestinal injury in STC rats. Besides, bile acid (BA) metabolomics based on UPLC-MS/MS revealed significant increase in serum levels of Cholic acid (CA), Deoxycholic acid (DCA), Chenodeoxycholic acid (CDCA), Ursodeoxycholic acid (UDCA), and Glycolithocholic acid (GLCA), whereas the contents of CA and DCA in feces were significantly decreased in STC rats. Nonetheless, they returned to the control levels after the SHTB administration. ELISA results showed that SHTB significantly hindered the excessive reabsorption of BAs by inhibiting apical sodium-dependent bile acid transporter (ASBT), organic solute transporter alpha (OSTα) and organic solute transporter beta (OSTβ) in the ileum tissue of STC rats. Furthermore, the DESI-MSI analysis revealed that SHTB remarkably enhanced DCA in the colon tissue of STC rats. The WB results indicated that SHTB reinstated Takeda G-protein–coupled receptor 5 (TGR5) expression, a receptor for BAs and a key regulator of colonic motility. Consequently, DCA exerted its effects on TGR5, leading to the promotion of colonic motility. This study provided more comprehensive and detailed information about the BA metabolomics in the serum, feces and colon of STC rats. These findings highlighted the promising potential of metabolomics based on UPLC-MS/MS and DESI-MSI method for application in the study of STC diseases.
慢传输性便秘(STC)是一种常见的肠道疾病。一些研究报告称,寿辉通便胶囊(SHTB)可有效缓解慢传输便秘症状。详细了解大鼠内源性代谢物谱的变化对于更准确地理解寿辉通便胶囊治疗 STC 的分子病理特征至关重要。本研究提出了一种基于超高效液相色谱-串联质谱(UPLC-MS/MS)和解吸电喷雾离子化(DESI)-质谱成像(MSI)的代谢组学方法,以研究二苯氧胺诱导的STC大鼠血清、粪便和结肠组织的代谢改变以及SHTB治疗对代谢的影响。然后,通过酶联免疫吸附试验(ELISA)和Western blot(WB)分析验证SHTB治疗STC的潜在机制。结果表明,SHTB 能明显改善 STC 大鼠的肠道蠕动,降低粪便含水量。此外,经 SHTB 治疗后,大鼠肌肉层厚度增加,证明了 SHTB 在减轻 STC 大鼠肠道损伤方面的有效性。此外,基于 UPLC-MS/MS 的胆汁酸(BA)代谢组学研究发现,STC 大鼠血清中胆酸(CA)、脱氧胆酸(DCA)、去氧胆酸(CDCA)、熊去氧胆酸(UDCA)和乙酰胆酸(GLCA)的含量显著增加,而粪便中 CA 和 DCA 的含量则显著减少。然而,在服用 SHTB 后,它们又恢复到了对照组的水平。ELISA结果显示,SHTB通过抑制STC大鼠回肠组织中的顶端钠依赖性胆汁酸转运体(ASBT)、有机溶质转运体α(OSTα)和有机溶质转运体β(OSTβ),明显阻碍了BAs的过度重吸收。此外,DESI-MSI 分析显示,SHTB 显著增强了 STC 大鼠结肠组织中的 DCA。WB 结果表明,SHTB 恢复了武田 G 蛋白偶联受体 5(TGR5)的表达,TGR5 是 BA 的受体,也是结肠运动的关键调节因子。因此,DCA 对 TGR5 发挥作用,从而促进结肠运动。这项研究提供了有关 STC 大鼠血清、粪便和结肠中 BA 代谢组学的更全面、更详细的信息。这些发现凸显了基于UPLC-MS/MS和DESI-MSI方法的代谢组学在STC疾病研究中的应用潜力。
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引用次数: 0
Development of an LC-HRMS non-targeted method for comprehensive profiling of the exposome of nicotine and tobacco product users – A showcase for cigarette smokers 开发一种用于全面分析尼古丁和烟草制品使用者暴露组的 LC-HRMS 非靶向方法--展示吸烟者的情况。
IF 2.8 3区 医学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-09-29 DOI: 10.1016/j.jchromb.2024.124330
Alpeshkumar Kachhadia, Therese Burkhardt, Gerhard Scherer, Max Scherer, Nikola Pluym
The global prevalence of electronic cigarettes, heated tobacco products, and other smokeless alternatives has grown significantly in the last ten years. These products have been suggested as combustion-free alternatives for conventional tobacco products like cigarettes, aiming to reduce the negative health impacts associated with smoking. However, the impact of those products on the health and safety of the general population are still unclear, as the absolute exposure from those products has not been thoroughly studied, yet. In this project, a non-targeted LC-HRMS method was developed comprising four different analytical modes for the investigation of the exposure profile in urine of the product users. The method is characterized by its high sensitivity and reproducibility, as shown during method validation. As a proof of concept, we first applied this method to detect significant differences in biomarkers of exposure (BoEs) between smokers and non-smokers. We observed a total of 171 BoEs significantly elevated in smokers, including several well-known biomarkers of smoke exposure like nicotine and its metabolites, mercapturic acid derivatives, and phenolic compounds. Some of the detected biomarkers are present at low ng/mL concentrations in urine, proving the high sensitivity needed for a holistic exploration of the exposome. Moreover, we were able to identify BoEs that have not been reported previously for smoking, such as 2,6-dimethoxyphenol and 7-methyl-1-naphthol glucuronide.
在过去十年中,电子香烟、加热烟草制品和其他无烟替代品在全球的普及率大幅增长。这些产品被建议作为香烟等传统烟草产品的免燃烧替代品,旨在减少与吸烟相关的负面健康影响。然而,这些产品对普通人群健康和安全的影响仍不明确,因为这些产品的绝对暴露量尚未得到深入研究。本项目开发了一种非靶向 LC-HRMS 方法,包括四种不同的分析模式,用于调查产品使用者尿液中的暴露概况。该方法的特点是灵敏度高、重现性好,这一点在方法验证过程中已得到证实。作为概念验证,我们首先应用该方法检测了吸烟者和非吸烟者之间生物标志物暴露(BoEs)的显著差异。我们共观察到 171 种生物标志物在吸烟者中明显升高,其中包括几种众所周知的烟雾暴露生物标志物,如尼古丁及其代谢物、巯基酸衍生物和酚类化合物。其中一些检测到的生物标志物在尿液中的浓度很低,仅为纳克/毫升,这证明了全面探索暴露组所需的高灵敏度。此外,我们还发现了以前未报道过的吸烟生物标志物,如 2,6-二甲氧基苯酚和 7-甲基-1-萘酚葡萄糖醛酸苷。
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引用次数: 0
A validated LC-MS/MS method for the simultaneous quantification of iothalamate and hippuran in serum and urine for non-radioactive kidney function assessment 一种经验证的 LC-MS/MS 方法,用于同时定量血清和尿液中的碘酞酸酯和希普兰,以进行非放射性肾功能评估。
IF 2.8 3区 医学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-09-28 DOI: 10.1016/j.jchromb.2024.124329
Abdulfataah A.A. Mohamed , Peter Walland , Jasper Stevens , Marco van Londen , Hiddo J.L. Heerspink , Ron T. Gansevoort , Nico C. van de Merbel
A novel liquid chromatography-tandem mass spectrometry method is described for the quantitative determination of the kidney function markers iothalamate and hippuran in human serum and urine. It is based on protein precipitation with methanol followed by dilution of the supernatant for serum and simple dilution for urine. The polar analytes are chromatographically separated by a 6.5-min gradient on a low-ligand density reversed-phase column; detection is performed by electrospray ionization tandem mass spectrometry in the positive ion mode against stable-isotope labeled internal standards.
The results of a thorough method validation show that iothalamate and hippuran can be simultaneously quantified in the concentration ranges 0.500–30.0 ng/mL and 10.0–5000 ng/mL for serum and urine, respectively, with values for CV and absolute bias not exceeding 10 %, and with sufficient stability in all relevant matrices and solvents. The method was successfully applied for the analysis of serum and urine samples of multiple individuals who received both iothalamate and hippuran.
本研究介绍了一种新型液相色谱-串联质谱法,用于定量检测人体血清和尿液中的肾功能标志物碘酞酸酯和希普兰。该方法基于甲醇沉淀蛋白质,然后稀释血清上清液和尿液上清液。极性分析物在低配体密度反相柱上以 6.5 分钟梯度进行色谱分离;检测采用电喷雾离子化串联质谱正离子模式,以稳定同位素标记的内标物为检测对象。彻底的方法验证结果表明,血清和尿液中的碘他拉马特和希普兰可分别在0.500-30.0 ng/mL和10.0-5000 ng/mL的浓度范围内同时定量,CV值和绝对偏差均不超过10%,且在所有相关基质和溶剂中均具有足够的稳定性。该方法成功地应用于分析同时接受了碘他拉马特和希普兰的多个个体的血清和尿液样本。
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引用次数: 0
An unconventional strategy for purifying recombinant SARS-CoV-2 spike protein 纯化重组 SARS-CoV-2 穗状病毒蛋白的非常规策略。
IF 2.8 3区 医学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-09-27 DOI: 10.1016/j.jchromb.2024.124328
Mrunal Ingawale , Mohammad Riaz , Yves Durocher , Raja Ghosh
The soluble domain of the trimeric SARS-CoV-2 spike protein is a promising candidate for a COVID-19 vaccine. Purification of this protein from mammalian cell culture supernatant using conventional resin-based chromatography is challenging as its large size (∼550 kDa) restricts its access and mobility within the pores of the resin particles. This reduces binding capacity and process robustness very significantly as extremely low flow rates need to be used during purification. Convection-based ion-exchange membrane chromatography has been found to be suitable in this respect. However, the high ionic strength of mammalian cell culture supernatant makes it difficult to bind this protein on charged membranes without dilution with a suitable buffer. An unconventional strategy involving size-exclusion chromatography as the first step, followed by cation exchange membrane chromatography as the second step is proposed in this paper. In the size exclusion chromatography step, the spike protein is excluded from the pores and can therefore be isolated in the void volume fraction. This step removes small molecule impurities and also serves as a desalting and buffer exchange step, making the partially purified material suitable for the cation exchange membrane chromatography step. The proposed process is variant-independent, fast and scalable and addresses some of the challenges associated with the currently used purification methods.
SARS-CoV-2 三聚体尖峰蛋白的可溶性结构域是 COVID-19 疫苗的理想候选蛋白。使用传统的树脂色谱法从哺乳动物细胞培养上清液中纯化这种蛋白质具有挑战性,因为它的尺寸很大(550 kDa),限制了它在树脂颗粒孔隙中的进入和流动性。由于在纯化过程中需要使用极低的流速,这大大降低了结合能力和工艺的稳健性。在这方面,对流离子交换膜色谱法是合适的。然而,哺乳动物细胞培养上清液的离子强度很高,如果不用合适的缓冲液稀释,就很难在带电膜上结合这种蛋白质。本文提出了一种非常规策略,第一步是尺寸排阻色谱法,第二步是阳离子交换膜色谱法。在尺寸排阻色谱步骤中,尖峰蛋白被排除在孔外,因此可以在空隙体积部分中分离出来。这一步骤可去除小分子杂质,同时也是脱盐和缓冲液交换步骤,使部分纯化的材料适合阳离子交换膜层析步骤。所提议的工艺与变量无关,快速且可扩展,解决了与目前使用的纯化方法相关的一些难题。
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引用次数: 0
Greener analysis of eleven basic drugs in blood and urine using carbowax 20M based biofluid sampler (BFS) device 使用基于 carbowax 20M 的生物流体采样器 (BFS) 对血液和尿液中的 11 种基本药物进行更绿色的分析
IF 2.8 3区 医学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-09-25 DOI: 10.1016/j.jchromb.2024.124327
Bharti Jain , Rajeev Jain , Abuzar Kabir , Nemat Ali , Mohammad Rashid Khan , Shweta Sharma
For the first time, a novel biofluid sampler (BFS) and sample preparation device is applied for the analysis of 11 basic drugs (i.e., pheniramine, chlorpheniramine, fluoxetine, tramadol, amitriptyline, ketamine, diazepam, chlordiazepoxide, clozapine, chlorpromazine, dothiepin) in biological matrices (i.e., blood and urine). BFS utilizes advanced, highly effective sorbents derived from sol-gel sorbent coating technology onto cellulose fabric substrate, improving sample collection and retention. BFS has the capability to retain a biological sample from 10 to 1000 µL without requiring any dilution or pre-treatment of the sample. The biological samples were pipetted onto the BFS device and dried at room temperature. Subsequently, adsorbed analytes were back-extracted into 1000 µL of methanol without requiring any imposed external diffusion process and then analyzed by gas chromatography-mass spectrometry (GC-MS). A one-factor-at-a-time (OFAT) screening procedure was used to extensively screen and optimize several parameters, including sample volume, elution time, solvent volume, and solvent type. Under the optimal conditions of the study, the method was found to be linear within the range 0.1–10 µg mL−1 for both blood and urine. Quantification limits were established for blood samples within the range of 0.072–0.095 μg mL−1 and for urine samples within the range of 0.050–0.069 μg mL−1. The precisions within and between days were less than 7% and 10%, respectively. The target analytes showed good recoveries utilizing the recommended protocol, with ranges of 45.1%–103.4%. Furthermore, the methodology has been effectively implemented in forensic toxicology case work. Moreover, the green characteristics and applicability of the suggested methodology was evaluated using softwares i.e., AGREE and BAGI.
首次将新型生物流体采样器(BFS)和样品制备装置用于分析生物基质(即血液和尿液)中的 11 种基本药物(即苯海拉明、氯苯那敏、氟西汀、曲马多、阿米替林、氯胺酮、地西泮、氯氮卓、氯氮平、氯丙嗪、多硫平)。BFS 采用先进、高效的吸附剂,这些吸附剂来自纤维素织物基底上的溶胶-凝胶吸附剂涂层技术,从而改进了样品的采集和保留。BFS 能够留存 10 到 1000 µL 的生物样本,无需对样本进行任何稀释或预处理。将生物样品移到 BFS 装置上,并在室温下干燥。随后,吸附的分析物被反萃取到 1000 µL 的甲醇中,无需任何外部扩散过程,然后通过气相色谱-质谱法(GC-MS)进行分析。采用一次一因素(OFAT)筛选程序对多个参数进行了广泛的筛选和优化,包括样品量、洗脱时间、溶剂量和溶剂类型。研究发现,在最佳条件下,该方法在血液和尿液中的线性范围均为 0.1-10 µg mL-1。血样的定量限为 0.072-0.095 μg mL-1,尿样的定量限为 0.050-0.069 μg mL-1。日内和日间的精确度分别低于 7% 和 10%。根据推荐的方案,目标分析物的回收率在 45.1%-103.4%之间。此外,该方法已在法医毒理学案例工作中得到有效应用。此外,还使用 AGREE 和 BAGI 软件对建议方法的绿色特性和适用性进行了评估。
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引用次数: 0
Thin film microextraction of apixaban from plasma based on the covalent organic framework coated on a mesh prior to liquid chromatography-tandem mass spectrometry 在液相色谱-串联质谱法之前,基于涂在网状物上的共价有机框架从血浆中进行薄膜微萃取阿哌沙班。
IF 2.8 3区 医学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-09-20 DOI: 10.1016/j.jchromb.2024.124302
Aysan Changizi Kecheklou , Mohammad Reza Afshar Mogaddam , Saeed Mohammad Sorouraddin , Mir Ali Farajzadeh , Ali Akbar Fathi
In this research, a new covalent organic framework was synthesized and utilized as a coating in thin film microextraction for the extraction of apixaban from plasma samples. This coating was applied to the mesh modified through immersion in a HF solution. The extracted drug was then analyzed using liquid chromatography-tandem mass spectrometry. By combining the high specific surface area and selectivity of the covalent organic framework, along with integrating the innovative thin film microextraction method and a sensitive analysis system, an efficient analytical approach was achieved. The target analyte was preconcentrated and extracted by immersing of the covalent organic framework-coated mesh as an absorbent into the biological sample. Subsequently, a sonication process was conducted for a specific duration. Following this, the extracted analyte was desorbed using acetonitrile as the elution solvent. The effective parameters of the proposed technique were optimized by using “one-parameter-at-a-time” strategy and the optimal conditions were selected. By integrating the developed method notable achievements were made in the terms of low limits of detection and quantification (0.17 and 0.56 µg/L, respectively), a wide linear range (0.05–250 µg/L), intra- and inter day precisions (with relative standard deviations of ≤14 %), as well as satisfactory extraction recoveries (53 % and 54 % in plasma and deionized water, respectively). Hence, it can be concluded that the introduced technique exhibits high efficiency and reliability when applied to biological samples.
本研究合成了一种新型共价有机框架,并将其作为薄膜微萃取的涂层,用于从血浆样品中萃取阿哌沙班。该涂层通过浸泡在氢氟酸溶液中应用于改性网状物上。然后使用液相色谱-串联质谱法对提取的药物进行分析。通过将共价有机框架的高比表面积和选择性与创新的薄膜微萃取方法和灵敏的分析系统相结合,实现了一种高效的分析方法。将涂有共价有机框架的网状物作为吸收剂浸入生物样品中,对目标分析物进行预浓缩和提取。随后,进行一定时间的超声处理。之后,使用乙腈作为洗脱溶剂对提取的分析物进行解吸。通过采用 "一次一个参数 "的策略,对所建议技术的有效参数进行了优化,并选出了最佳条件。通过整合所开发的方法,在以下方面取得了显著成果:低检出限和定量限(分别为 0.17 和 0.56 µg/L)、宽线性范围(0.05-250 µg/L)、日内和日间精确度(相对标准偏差≤14%)以及令人满意的提取回收率(在血浆和去离子水中分别为 53% 和 54%)。因此,可以得出结论:该技术在生物样本中的应用具有高效性和可靠性。
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引用次数: 0
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Journal of Chromatography B
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