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DNA barcoding approach to characterize microalgae isolated from freshwater systems in Ecuador DNA条形码方法鉴定厄瓜多尔淡水系统中分离的微藻
IF 0.9 Q4 ECOLOGY Pub Date : 2021-01-01 DOI: 10.1080/23766808.2021.1920296
I. Ballesteros, Paulina Terán, Cristina Guamán-Burneo, N. González, Alejandra Cruz, Pablo Castillejo
ABSTRACT The use of suitable DNA barcodes and the generation of databases with reference sequences have been considered a promissory approach for the identification of Chlorophyta and Cyanophyta microalgae. In this study, we carried out a molecular characterization and identification of strains isolated from freshwater systems in Ecuador using a dual barcode method. The target sequences for Chlorophyta were 18S rDNA and rbcL genes, and 16S rDNA and 16S–23S rDNA intergenic spacer (ITS) for Cyanophyta. We reported these DNA barcodes for 20 different Molecular Operational Taxonomic Units (MOTUs) for Chlorophyta and 10 for Cyanophyta. Our results show that the 18S V4 hypervariable region (300 bp) is sufficient for differentiating between isolates, but rbcL is a determinant for genus identification in Scenedesmaceae and Chlorellaceae strains. In Cyanophyta, both barcodes enabled the genus-level assignment of 9 out of 10 MOTUs. These results highlight the necessity of a second barcode additional to small ribosomal subunit sequences to improve molecular identification. Furthermore, the present study significantly contributes to the body of Ecuadorian barcode sequences of microalgae that are currently documented, making them available for future comparative diversity studies.
摘要使用合适的DNA条形码和生成具有参考序列的数据库被认为是鉴定绿藻和蓝藻微藻的一种有前景的方法。在本研究中,我们使用双条形码方法对从厄瓜多尔淡水系统分离的菌株进行了分子表征和鉴定。叶绿体的靶序列是18S rDNA和rbcL基因,蓝藻的靶序列为16S rDNA及16S–23S rDNA基因间间隔区(ITS)。我们报道了20个不同的叶绿素门分子操作分类单元(MOTU)和10个蓝藻门的DNA条形码。我们的结果表明,18SV4高变区(300bp)足以区分分离株,但rbcL是Scedesmaceae和Chlorellaceae菌株属鉴定的决定因素。在蓝藻门中,两个条形码都能实现10个MOTU中9个MOTU的属级分配。这些结果强调了在小核糖体亚基序列之外添加第二个条形码以改进分子鉴定的必要性。此外,本研究对目前记录的厄瓜多尔微藻条形码序列做出了重大贡献,使其可用于未来的比较多样性研究。
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引用次数: 6
Farah's Article 法拉的文章
IF 0.9 Q4 ECOLOGY Pub Date : 2021-01-01 DOI: 10.1080/23766808.2021.1940048_1
DA Rahaf, Carolina Reyes-Puig
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引用次数: 0
The effect of environmental variables on nightly activity patterns of insectivorous bats monitored over ten years in a tropical premontane forest, Costa Rica 哥斯达黎加热带前热带森林中环境变量对食虫蝙蝠夜间活动模式的影响
IF 0.9 Q4 ECOLOGY Pub Date : 2021-01-01 DOI: 10.1080/23766808.2021.2000294
R. Laval, R. Lawton
ABSTRACT We investigated the role of environmental and temporal variables on the activity of 20 species of aerial insectivorous bats at a site in tropical premontane forest in Monteverde, Costa Rica. The primary study site was an opening in secondary forest adjacent to the Children’s Eternal Rainforest. We passively monitored the echolocation calls of all bats detected by an Anabat II detector all night for 1,147 nights from November 2000 through August 2010, from which we were able to identify the species in more than 250,000 bat passes. Simultaneously, we recorded environmental variables. Five species accounted for most of the activity, but the relative frequency of these species fluctuated widely over the ten-year period. The likelihood of any one of the three most common species being present was significantly influenced by wind, rain, phase of the moon, the time of night, the season of the year, and the presence of the other two species. In general, strong winds are associated with an increase in bat activity, moderate to heavy rain seems to halt bat activity, full moon appears to depress bat activity, and bats seem to be most active early in the evening. The number of bat passes at the study site declined over the ten-year period, possibly at least partially due to bat preference for foraging near bright lights, which increased markedly during the period due to development for tourism.
摘要/ ABSTRACT摘要:本文研究了环境和时间变量对哥斯达黎加蒙特维德热带前山林20种食虫蝙蝠活动的影响。主要的研究地点是毗邻儿童永恒雨林的次生林的一个开口。从2000年11月到2010年8月,我们对Anabat II探测器探测到的所有蝙蝠的回声定位呼叫进行了1147个夜晚的被动监测,从中我们能够在超过25万次蝙蝠通行证中识别出物种。同时,我们记录了环境变量。5种占了大部分的活动,但这些物种的相对频率在10年期间波动很大。三种最常见物种中任何一种出现的可能性都受到风、雨、月相、夜晚时间、一年中的季节以及其他两种物种出现的显著影响。一般来说,强风与蝙蝠活动的增加有关,中等到大雨似乎会阻止蝙蝠的活动,满月似乎会抑制蝙蝠的活动,蝙蝠似乎在傍晚的早些时候最活跃。在10年的时间里,蝙蝠通过研究地点的次数有所下降,至少部分原因可能是蝙蝠喜欢在明亮的光线附近觅食,而在此期间,由于旅游业的发展,蝙蝠的觅食次数显著增加。
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引用次数: 1
First comprehensive insights into the biogeography of the Caribbean intertidal oribatid mite fauna (Ameronothroidea) 首次全面了解加勒比潮间带甲螨动物群的生物地理学
IF 0.9 Q4 ECOLOGY Pub Date : 2021-01-01 DOI: 10.1080/23766808.2021.1906136
T. Pfingstl
ABSTRACT A decade ago the Caribbean was almost completely uncharted in terms of intertidal ameronothroid mites. Now the present data show that these organisms are a common component of the fauna of Caribbean shorelines. Two families of Ameronothroidea are present, the Fortuyniidae with three genera and four species and the Selenoribatidae with five genera and nine species. The most common species are the fortuyniid Alismobates inexpectatus and the selenoribatid Carinozetes mangrovi, both taxa were found in the Northern Caribbean, the Greater and Lesser Antilles as well as on Central American coasts. Six species are endemic to the Caribbean, Litoribates bonairensis, L. floridae, Schusteria marina, Thalassozetes balboa, T. barbara and Thasecazetes falcidactylus. Biogeographic patterns suggest that the genera Carinozetes and Litoribates may have evolved and diversified in the Caribbean region and that the Western Atlantic Bermudian intertidal oribatid mite fauna was largely shaped by Caribbean colonizers. Most of the species found in the Caribbean are typical rock dwellers and only a minority is represented by exclusive mangrove specialists. These species are seriously threatened by the significant progressive decline of mangrove ecosystems throughout the Caribbean.
十年前,加勒比海的潮间带阿龙拟虫几乎是完全未知的。现在的数据表明,这些生物是加勒比海岸动物群的共同组成部分。飞蛾亚科有飞蛾亚科3属4种,飞蛾亚科5属9种。最常见的种类是fortuyniid Alismobates inexpectatus和selenoribatid Carinozetes mangrovi,这两个分类群都在加勒比海北部、大安的列斯群岛和小安的列斯群岛以及中美洲海岸被发现。6种是加勒比地区特有的,分别是:利托贝茨·博纳耐氏、L.佛罗里达科、滨海Schusteria marina、balboa Thalassozetes、T. barbara和falcidactylus。生物地理模式表明,Carinozetes属和Litoribates属可能在加勒比地区进化和多样化,西大西洋百慕大潮间带甲螨动物群在很大程度上是由加勒比殖民者塑造的。在加勒比海发现的大多数物种都是典型的岩石居民,只有少数是红树林专家。这些物种受到整个加勒比地区红树林生态系统显著逐渐减少的严重威胁。
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引用次数: 2
Filling biogeographical gaps through wildlife roadkills: New distribution records for six snake species from Ecuador (Anilius scytale, Drymarchon corais, Erythrolamprus breviceps, Micrurus lemniscatus, Oxyrhopus vanidicus, Trilepida anthracina) 通过野生动物道路杀戮填补生物地理空白:厄瓜多尔六种蛇的新分布记录(镰刀蛇、长尾蛇、短尾蛇、lemniscatus、vanidusoxyrhopus、炭疽三足虫)
IF 0.9 Q4 ECOLOGY Pub Date : 2021-01-01 DOI: 10.1080/23766808.2021.2010469
P. Medrano‐Vizcaíno, David Brito-Zapata
ABSTRACT Monitoring wildlife roadkills is a valuable method to identify critical areas where animals are more susceptible to collision with vehicles, likewise, this type of work can let us know which species are more vulnerable to this human impact. Besides these relevant utilities used for mitigation purposes, this effort can provide very important information about the biology, ecology and biogeography of species. In this paper, we report new geographic records found while working on a road ecology study. These data increase the distribution of six snakes’ species (Anilius scytale, Drymarchon corais, Erythrolamprus breviceps, Micrurus lemniscatus, Oxyrhopus vanidicus and Trilepida anthracina), from which, four show scarce and almost inexistent historical records (Anilius scytale, Drymarchon corais, Erythrolamprus breviceps, and Trilepida anthracina). We encourage researchers, especially road ecologists, to notice and report these observations, which can be highly valuable for expanding the knowledge of species distributions, a key factor forconducting integral studies of fauna.
摘要监测野生动物道路死亡是识别动物更容易与车辆碰撞的关键区域的一种有价值的方法,同样,这类工作可以让我们知道哪些物种更容易受到这种人类影响。除了这些用于缓解目的的相关设施外,这项工作还可以提供关于物种生物学、生态学和生物地理学的非常重要的信息。在这篇论文中,我们报告了在进行道路生态学研究时发现的新的地理记录。这些数据增加了六种蛇的分布(Anilius scytale、Drymarchon corais、短红腹蛛、Micrurus lemniscatus、Oxyropous vanidicus和Trilepida anthancina),其中四种显示了稀少且几乎不存在的历史记录(Aniliu scytale,Drymarcon corais,短红腹蝶和Trilebida anthanchina)。我们鼓励研究人员,特别是道路生态学家,注意并报告这些观测结果,这些观测结果对于扩大物种分布的知识非常有价值,而物种分布是进行动物群整体研究的关键因素。
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引用次数: 4
An opportunist predator hidden in the vegetation: on the predation of birds by Philodryas olfersii (Serpentes: Dipsadidae) 隐藏在植被中的机会主义捕食者:论Philodryas olfersii对鸟类的捕食
IF 0.9 Q4 ECOLOGY Pub Date : 2021-01-01 DOI: 10.1080/23766808.2021.1879544
F. T. Mise, J. Miranda, Danusy Lopes Santos, Alexandre Curcino, F. H. Oda
ABSTRACT Snakes are common predators of birds. However, reported cases of snake predation on Troglodytes musculus are scarce. Here, we report a predation attempt of a Troglodytes musculus nestling by the dipsadid snake Philodryas olfersii. We also present a list with bird species recorded as prey of this snake species. We found 25 predation events of P. olfersii on adult, juvenile, and nestling birds. A total of 19 bird species from 14 families have been reported as prey of P. olfersii. Most predation events occurred on the vegetation, while some others were observed on the ground, cage, and artificial nest.
摘要蛇是鸟类常见的捕食者。然而,报道的蛇捕食Troglodytes musculus的案例很少。在这里,我们报道了一种由双足类蛇Philodryas olfersii捕食一只穴居的Troglodytes肌肉的尝试。我们还提供了一份清单,列出了被记录为这种蛇的猎物的鸟类。我们发现了25起狼蛛对成年、幼鸟和雏鸟的捕食事件。据报道,共有来自14个科的19种鸟类被认为是狼蛛的猎物。大多数捕食事件发生在植被上,而其他一些则发生在地面、笼子和人工巢穴上。
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引用次数: 1
Distribution shifts in habitat suitability and hotspot refugia of Andean tree species from the last glacial maximum to the Anthropocene 从最后一次冰川盛期到人类世安第斯树种栖息地适宜性和热点避难所的分布变化
IF 0.9 Q4 ECOLOGY Pub Date : 2021-01-01 DOI: 10.1080/23766808.2021.1957652
Alejandra I. Domic, J. Capriles
ABSTRACT Forecasting the effects of climate change on the distribution of Andean trees (Polylepis, Rosaceae) is important to understand how species respond to climate variability and to assess their resilience to the ongoing climate crisis. Here, paleodistribution modelling is used to assess distribution shifts of 17 Polylepis species during the Last Glacial Maximum (LGM), mid-Holocene (MH), and the Anthropocene in the central Andes. Species distribution models (SDMs) were computed by combining presence records and current climatic conditions using Maxent and projected onto three climatic scenarios for the LGM (~22,000 yr BP), the MH (~6,000 yr BP), and the Anthropocene (1,970–2,000). Subsequently, current refugia hotspots were identified by intersecting suitable habitat over the LGM, MH, and anthropogenic conditions for all the studied species. SDMs for the LGM and MH showed a contraction of climate suitable habitat for most of the species in comparison to the Anthropocene. Four current refugia hotspots were identified: central Cordillera of Peru, Lake Titicaca basin, western Cordillera of Bolivia, and northern Chile. In general, SDMs were consistent with patterns proposed with pollen records, and partially with available phylogeographic studies. Current hotspots are highly important areas for the conservation of Polylepis and associated biota. This study assists in understanding distribution shifts over millennia of Andean tree species in response to climate change and identifying key conservation areas for the delineation of future conservation strategies.
摘要预测气候变化对安第斯树木分布的影响对于了解物种如何应对气候变化和评估其对持续气候危机的抵御能力至关重要。在这里,古分布模型用于评估安第斯山脉中部末次冰川盛期(LGM)、全新世中期(MH)和人类世期间17种Polylepis物种的分布变化。物种分布模型(SDM)是通过使用Maxent结合存在记录和当前气候条件计算的,并预测到LGM(约22000年BP)、MH(约6000年BP)和人类世(1970–2000)的三种气候情景中。随后,通过对所有研究物种的LGM、MH和人为条件的适当栖息地进行交叉,确定了当前的避难所热点。LGM和MH的SDM显示,与人类世相比,大多数物种的气候适宜栖息地缩小。目前确定了四个避难所热点:秘鲁的科迪勒拉中部、喀喀湖流域、玻利维亚的科迪勒拉西部和智利北部。总的来说,SDM与花粉记录中提出的模式一致,部分与现有的系统地理学研究一致。目前的热点地区是保护Polylepis和相关生物群的非常重要的地区。这项研究有助于了解安第斯树种数千年来因气候变化而发生的分布变化,并确定未来保护战略的关键保护区。
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引用次数: 3
Nesting biology and nest survival of the Grassland Sparrow (Ammodramus humeralis) in grazed grasslands of central-eastern Argentina 阿根廷中东部放牧草原草原麻雀的筑巢生物学和巢生存
IF 0.9 Q4 ECOLOGY Pub Date : 2021-01-01 DOI: 10.1080/23766808.2021.1888625
M. Colombo, Adrián Jauregui, E. Gonzalez, L. Segura
ABSTRACT Knowledge of the breeding biology of grassland birds is important given the accelerated rate of transformation of their habitats, which has led to noticeable population declines of many species. Although several species in South America are of conservation concern due to habitat alteration, information on their nesting biology is generally sparse. During three seasons we studied a breeding population of a poorly studied ground-nesting bird, the Grassland Sparrow (Ammodramus humeralis), in grasslands used for cattle grazing in central-eastern Argentina. We described its breeding parameters, estimated nestling growth curves, and analyzed daily nest survival rates (DSR) as a function of grassland characteristics, including grass density, grass height, and distance to forest edges. We found 34 nests placed among low and sparse vegetation and made exclusively of grass. The modal clutch size was three eggs. Incubation and nestling periods lasted 11 and 10.5 days, respectively. Nestlings had a fast-growing tarsus, which could be advantageous to escape from predators early. Only seven nests (20.6%) were successful and predation was the principal cause of nest failure (78% of the failures). DSR was 0.91, resulting in a cumulative survival of 11% for the 23.5 day nesting period. We found no effects of habitat features on DSR, which may be a consequence of the high predation rate and a very diverse predator community in the area. Studies at a broader scale could help to elucidate which habitats favor the reproduction of these species. We emphasize the importance of knowing basic ecological aspects of native grassland birds to develop management plans, especially given the lack of protected grassland areas in the Pampas Grassland ecoregion.
由于草原鸟类栖息地的变化速度加快,导致许多物种的数量明显下降,因此了解草原鸟类的繁殖生物学是很重要的。虽然南美洲有几个物种由于栖息地的改变而受到保护,但关于它们筑巢生物学的信息通常很少。在三个季节里,我们在阿根廷中东部用于放牧的草原上研究了一种鲜有研究的地面筑巢鸟类——草原麻雀(Ammodramus humeralis)的繁殖种群。我们描述了其繁殖参数,估计了雏鸟生长曲线,并分析了日巢存活率(DSR)与草地特征(包括草密度、草高和到森林边缘的距离)的关系。我们在低矮稀疏的植被中发现了34个完全由草构成的巢穴。模态窝卵数为三个蛋。孵育期11 d,雏鸟期10.5 d。雏鸟有一个快速生长的跗骨,这可能有利于早期逃离捕食者。只有7只(20.6%)成功筑巢,捕食是巢失败的主要原因(78%)。DSR为0.91,在23.5天的筑巢期累计成活率为11%。研究发现,生境特征对大鼠的DSR没有影响,这可能与该地区高捕食率和捕食者群落多样性有关。更大规模的研究可以帮助阐明哪些栖息地有利于这些物种的繁殖。我们强调了解原生草原鸟类的基本生态方面对于制定管理计划的重要性,特别是考虑到潘帕斯草原生态区缺乏保护区。
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引用次数: 5
Responses of Polylepis birds to patch and landscape attributes in the High Andes 高安第斯山区水翅鸟对斑块和景观属性的响应
IF 0.9 Q4 ECOLOGY Pub Date : 2021-01-01 DOI: 10.1080/23766808.2020.1869900
C. S. Sevillano-Rios, A. Rodewald
ABSTRACT Habitat loss and fragmentation can devastate biodiversity, especially at regional and global scales. However, generalizing to individual species is challenging given the wide variety of intrinsic and extrinsic factors that shape species-specific responses – particularly among species that are specialists, generalists, or adapted to naturally patchy landscapes. In this study, we examined how patch and landscape attributes affected bird communities within Polylepis forest ecosystems, which are patchily distributed within landscapes of Puna grasslands and shrublands in the High Andes of Peru (3,300–4,700 m). We surveyed birds in 59 Polylepis patches and 47 sites in the Puna matrix, resulting in 13,210 observations of 88 bird species, including 15 species of conservation concern specialized on Polylepis. Data were analysed using Multi-Species Occupancy-Models (MSOM) and cumulative species-area curves. Species richness was generally greatest at mid-to-low elevations, within small fragments, and in landscapes with comparatively little forest cover; this was especially true for birds associated with the Puna matrix. Consistent with the hypothesis that Polylepis specialists are adapted to naturally patchy landscapes, we found no evidence that Polylepis specialists were sensitive to patch size, though two of nine species were positively related to forest cover within 200 m. Our work shows that small patches of Polylepis have high ecological value and that conservation of species of concern may depend more on retaining at least 10% forest cover within landscapes than on the presence of large patches of Polylepis.
摘要栖息地的丧失和破碎化会破坏生物多样性,尤其是在区域和全球范围内。然而,考虑到形成物种特异性反应的各种内在和外在因素,特别是在专家、多面手或适应自然斑块景观的物种中,将其推广到单个物种是具有挑战性的。在这项研究中,我们研究了斑块和景观属性如何影响Polylapis森林生态系统中的鸟类群落,这些森林生态系统零星分布在秘鲁安第斯山脉(3300–4700米)的普纳草原和灌木林景观中。我们调查了59个Polylepis斑块和Puna矩阵中47个地点的鸟类,对88种鸟类进行了13210次观测,其中包括15种专门针对Polylepiss的保护关注物种。使用多物种占用模型(MSOM)和累积物种面积曲线对数据进行分析。物种丰富度通常在中低海拔、小碎片和森林覆盖相对较少的景观中最高;对于与普纳矩阵相关的鸟类来说尤其如此。与Polylapis专家适应自然斑块景观的假设一致,我们没有发现证据表明Polylapis专业人员对斑块大小敏感,尽管九个物种中有两个与200米范围内的森林覆盖呈正相关。我们的工作表明,小面积的Polylapis具有很高的生态价值,保护受关注的物种可能更多地取决于在景观中保留至少10%的森林覆盖率,而不是大面积的Polylipis。
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引用次数: 4
Leaf morphoanatomical traits of Jacquinia armillaris Jacq. (Theophrastoideae - Primulaceae) in two xeric shrublands from Venezuela 蜜花花叶片形态解剖特征。(报春花科-报春花科)产于委内瑞拉的两个干旱性灌丛
IF 0.9 Q4 ECOLOGY Pub Date : 2021-01-01 DOI: 10.1080/23766808.2021.1964911
Y. Galviz, R. Valerio
ABSTRACT This study aimed to investigate the leaf anatomy of Jacquinia armillaris plants in two different Venezuelan xeric shrublands to evaluate possible variations caused by the environments, which differ in rainfall and soil salinity. Leaf samples were collected in two sites: La Tortuga Island, a dryer and salty environment than the other collecting site, Turpialito, a coastal location in the mainland. The epidermis and the mesophylls were observed with a light microscope and measured with an ocular micrometer inserted in one of the eyepieces. The results show that J. armillaris has many characteristic anatomical traits of xerophytes, among them: thick cuticles and thick epidermis in both leaf surfaces, stomata only in the abaxial side and epidermal depressions lodging a glandular trichome. Leaves are bifacial and present multistratified palisade parenchyma facing the adaxial epidermis and abaxial spongy parenchyma with abundant intercellular spaces. Furthermore, the hypodermis is composed of one or two cell layers below the upper epidermis. Leaf lamina dimension, petiole, cuticles, epidermis and hypodermis cells, as well as the stomatal occlusive cells and number of trichomes, had differences in size and number when the plants of both sites were compared, being higher in plants from La Tortuga. On the other hand, palisade parenchyma and stomatal density were higher in Turpialito plants. Plants collected in La Tortuga Island showed characteristics that suggest adaptation to the island’s saline and more arid conditions in comparison to plants from Turpialito, which presented more leaf traits related to adaptations to water deficit. These results demonstrate the phenotypic plasticity of J. armillaris plants that grow in two different xeric shrublands.
摘要本研究旨在研究委内瑞拉两个不同xeric灌木林中的蜜环菌(Jacquinia armillaris)植物的叶片解剖结构,以评估降雨和土壤盐度不同的环境可能引起的变化。在两个地点采集了叶片样本:La Tortuga岛,这是一个比另一个采集地点Turpialito更干燥、更咸的环境,该地点位于大陆的沿海地区。用光学显微镜观察表皮和叶肉,并用插入其中一个目镜中的目镜进行测量。结果表明,蜜环菌具有许多典型的旱生植物解剖特征,其中:叶片表面角质层厚,表皮厚,气孔仅在背面,表皮凹陷处有腺毛。叶为双面,具有多层栅栏薄壁组织,面向正面表皮和背面海绵状薄壁组织,具有丰富的细胞间隙。此外,皮下组织由上表皮下方的一个或两个细胞层组成。叶片尺寸、叶柄、角质层、表皮和皮下细胞,以及气孔闭塞细胞和毛状体的数量,在比较这两个部位的植物时,在大小和数量上存在差异,在La Tortuga的植物中更高。另一方面,吐鲁番植物栅栏薄壁组织和气孔密度较高。La Tortuga岛上采集的植物表现出的特征表明,与Turpialito岛上的植物相比,它们适应了岛上的盐碱和更干旱的条件,Turpialido岛上的作物表现出更多与适应缺水有关的叶片特征。这些结果证明了生长在两种不同的xeric灌木林中的蜜环菌植物的表型可塑性。
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引用次数: 1
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Neotropical Biodiversity
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