Pub Date : 2019-05-28DOI: 10.1007/978-3-030-18174-1_2
Tom Davot, A. Chateau, R. Giroudeau, Mathias Weller
{"title":"New Polynomial-Time Algorithm Around the Scaffolding Problem","authors":"Tom Davot, A. Chateau, R. Giroudeau, Mathias Weller","doi":"10.1007/978-3-030-18174-1_2","DOIUrl":"https://doi.org/10.1007/978-3-030-18174-1_2","url":null,"abstract":"","PeriodicalId":371010,"journal":{"name":"International Conference on Algorithms for Computational Biology","volume":"25 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2019-05-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"123492686","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2019-05-28DOI: 10.1007/978-3-030-18174-1_3
Ozan Kahramanoğulları
{"title":"Enumerating Dominant Pathways in Biological Networks by Information Flow Analysis","authors":"Ozan Kahramanoğulları","doi":"10.1007/978-3-030-18174-1_3","DOIUrl":"https://doi.org/10.1007/978-3-030-18174-1_3","url":null,"abstract":"","PeriodicalId":371010,"journal":{"name":"International Conference on Algorithms for Computational Biology","volume":"142 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2019-05-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"124494375","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2019-05-28DOI: 10.1007/978-3-030-18174-1_12
Thien Le, Aaron Sy, Erin K. Molloy, Qiuyi Zhang, Satish Rao, T. Warnow
{"title":"Using INC Within Divide-and-Conquer Phylogeny Estimation","authors":"Thien Le, Aaron Sy, Erin K. Molloy, Qiuyi Zhang, Satish Rao, T. Warnow","doi":"10.1007/978-3-030-18174-1_12","DOIUrl":"https://doi.org/10.1007/978-3-030-18174-1_12","url":null,"abstract":"","PeriodicalId":371010,"journal":{"name":"International Conference on Algorithms for Computational Biology","volume":"32 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2019-05-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"121352419","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2019-05-28DOI: 10.1007/978-3-030-18174-1_7
P. Avdeyev, M. Atamanova, M. Alekseyev
{"title":"A Uniform Theory of Adequate Subgraphs for the Genome Median, Halving, and Aliquoting Problems","authors":"P. Avdeyev, M. Atamanova, M. Alekseyev","doi":"10.1007/978-3-030-18174-1_7","DOIUrl":"https://doi.org/10.1007/978-3-030-18174-1_7","url":null,"abstract":"","PeriodicalId":371010,"journal":{"name":"International Conference on Algorithms for Computational Biology","volume":"12 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2019-05-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"115502461","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2019-05-28DOI: 10.1007/978-3-030-18174-1_14
K. Nousiainen, Jukka Intosalmi, H. Lähdesmäki
{"title":"A Mathematical Model for Enhancer Activation Kinetics During Cell Differentiation","authors":"K. Nousiainen, Jukka Intosalmi, H. Lähdesmäki","doi":"10.1007/978-3-030-18174-1_14","DOIUrl":"https://doi.org/10.1007/978-3-030-18174-1_14","url":null,"abstract":"","PeriodicalId":371010,"journal":{"name":"International Conference on Algorithms for Computational Biology","volume":"84 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2019-05-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"128709360","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2019-05-28DOI: 10.1007/978-3-030-18174-1_15
A. Rahman, L. Pachter
{"title":"Transcript Abundance Estimation and the Laminar Packing Problem","authors":"A. Rahman, L. Pachter","doi":"10.1007/978-3-030-18174-1_15","DOIUrl":"https://doi.org/10.1007/978-3-030-18174-1_15","url":null,"abstract":"","PeriodicalId":371010,"journal":{"name":"International Conference on Algorithms for Computational Biology","volume":"47 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2019-05-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"126884581","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2019-05-28DOI: 10.1007/978-3-030-18174-1_16
Peng Xiao, Xingyu Cai, S. Rajasekaran
{"title":"Efficient Algorithms for Finding Edit-Distance Based Motifs","authors":"Peng Xiao, Xingyu Cai, S. Rajasekaran","doi":"10.1007/978-3-030-18174-1_16","DOIUrl":"https://doi.org/10.1007/978-3-030-18174-1_16","url":null,"abstract":"","PeriodicalId":371010,"journal":{"name":"International Conference on Algorithms for Computational Biology","volume":"1 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2019-05-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"129814235","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2019-05-28DOI: 10.1007/978-3-030-18174-1_9
Christopher Wright, S. Krishnamoorthy, Milind Kulkarni
{"title":"MULKSG: MULtiple K Simultaneous Graph Assembly","authors":"Christopher Wright, S. Krishnamoorthy, Milind Kulkarni","doi":"10.1007/978-3-030-18174-1_9","DOIUrl":"https://doi.org/10.1007/978-3-030-18174-1_9","url":null,"abstract":"","PeriodicalId":371010,"journal":{"name":"International Conference on Algorithms for Computational Biology","volume":"7 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2019-05-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"116842636","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2018-06-25DOI: 10.1007/978-3-319-91938-6_11
J. Silvestre-Ryan, I. Holmes
{"title":"Consensus Decoding of Recurrent Neural Network Basecallers","authors":"J. Silvestre-Ryan, I. Holmes","doi":"10.1007/978-3-319-91938-6_11","DOIUrl":"https://doi.org/10.1007/978-3-319-91938-6_11","url":null,"abstract":"","PeriodicalId":371010,"journal":{"name":"International Conference on Algorithms for Computational Biology","volume":"13 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2018-06-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"115576287","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}