Pub Date : 2017-06-05DOI: 10.1007/978-3-319-58163-7_9
A. Ozdemir, Michael Sheely, Daniel Bork, Ricson Cheng, Reyna Hulett, Jea-Duck Sung, Jincheng Wang, R. Libeskind-Hadas
{"title":"Clustering the Space of Maximum Parsimony Reconciliations in the Duplication-Transfer-Loss Model","authors":"A. Ozdemir, Michael Sheely, Daniel Bork, Ricson Cheng, Reyna Hulett, Jea-Duck Sung, Jincheng Wang, R. Libeskind-Hadas","doi":"10.1007/978-3-319-58163-7_9","DOIUrl":"https://doi.org/10.1007/978-3-319-58163-7_9","url":null,"abstract":"","PeriodicalId":371010,"journal":{"name":"International Conference on Algorithms for Computational Biology","volume":"38 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2017-06-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"122707376","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2017-06-05DOI: 10.1007/978-3-319-58163-7_11
Ozan Kahramanoğulları
{"title":"Quantifying Information Flow in Chemical Reaction Networks","authors":"Ozan Kahramanoğulları","doi":"10.1007/978-3-319-58163-7_11","DOIUrl":"https://doi.org/10.1007/978-3-319-58163-7_11","url":null,"abstract":"","PeriodicalId":371010,"journal":{"name":"International Conference on Algorithms for Computational Biology","volume":"2008 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2017-06-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"125619119","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2016-06-21DOI: 10.1007/978-3-319-38827-4_6
Esteban López-Camacho, María Jesús García-Godoy, J. García-Nieto, Antonio J. Nebro, J. F. A. Montes
{"title":"A New Multi-objective Approach for Molecular Docking Based on RMSD and Binding Energy","authors":"Esteban López-Camacho, María Jesús García-Godoy, J. García-Nieto, Antonio J. Nebro, J. F. A. Montes","doi":"10.1007/978-3-319-38827-4_6","DOIUrl":"https://doi.org/10.1007/978-3-319-38827-4_6","url":null,"abstract":"","PeriodicalId":371010,"journal":{"name":"International Conference on Algorithms for Computational Biology","volume":"1 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2016-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"129568114","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2016-06-21DOI: 10.1007/978-3-319-38827-4_14
S. P. Tsarev, M. Sadovsky
{"title":"New Error Tolerant Method for Search of Long Repeats in DNA Sequences","authors":"S. P. Tsarev, M. Sadovsky","doi":"10.1007/978-3-319-38827-4_14","DOIUrl":"https://doi.org/10.1007/978-3-319-38827-4_14","url":null,"abstract":"","PeriodicalId":371010,"journal":{"name":"International Conference on Algorithms for Computational Biology","volume":"7 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2016-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"124676755","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2016-06-21DOI: 10.1007/978-3-319-38827-4_4
Charmi Panchal, Sepinoud Azimi, I. Petre
{"title":"Generating the Logicome of a Biological Network","authors":"Charmi Panchal, Sepinoud Azimi, I. Petre","doi":"10.1007/978-3-319-38827-4_4","DOIUrl":"https://doi.org/10.1007/978-3-319-38827-4_4","url":null,"abstract":"","PeriodicalId":371010,"journal":{"name":"International Conference on Algorithms for Computational Biology","volume":"49 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2016-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"130838200","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2016-06-21DOI: 10.1007/978-3-319-38827-4_12
S. Faro
{"title":"Evaluation and Improvement of Fast Algorithms for Exact Matching on Genome Sequences","authors":"S. Faro","doi":"10.1007/978-3-319-38827-4_12","DOIUrl":"https://doi.org/10.1007/978-3-319-38827-4_12","url":null,"abstract":"","PeriodicalId":371010,"journal":{"name":"International Conference on Algorithms for Computational Biology","volume":"24 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2016-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"116711709","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2016-06-21DOI: 10.1007/978-3-319-38827-4_13
M. Rautiainen, Leena Salmela, V. Mäkinen
{"title":"Identification of Variant Compositions in Related Strains Without Reference","authors":"M. Rautiainen, Leena Salmela, V. Mäkinen","doi":"10.1007/978-3-319-38827-4_13","DOIUrl":"https://doi.org/10.1007/978-3-319-38827-4_13","url":null,"abstract":"","PeriodicalId":371010,"journal":{"name":"International Conference on Algorithms for Computational Biology","volume":"23 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2016-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"129439844","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2016-06-21DOI: 10.1007/978-3-319-38827-4_2
Daniel Figueiredo
{"title":"Relating Bisimulations with Attractors in Boolean Network Models","authors":"Daniel Figueiredo","doi":"10.1007/978-3-319-38827-4_2","DOIUrl":"https://doi.org/10.1007/978-3-319-38827-4_2","url":null,"abstract":"","PeriodicalId":371010,"journal":{"name":"International Conference on Algorithms for Computational Biology","volume":"112 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2016-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"122047003","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2016-06-21DOI: 10.1007/978-3-319-38827-4_3
T. Kmet, M. Kmetová
{"title":"Neural Networks Simulation of Feeding Adaptations of Daphnia","authors":"T. Kmet, M. Kmetová","doi":"10.1007/978-3-319-38827-4_3","DOIUrl":"https://doi.org/10.1007/978-3-319-38827-4_3","url":null,"abstract":"","PeriodicalId":371010,"journal":{"name":"International Conference on Algorithms for Computational Biology","volume":"17 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2016-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"124462800","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2016-06-21DOI: 10.1007/978-3-319-38827-4_8
Sourya Bhattacharyya, J. Mukhopadhyay
{"title":"Accumulated Coalescence Rank and Excess Gene Count for Species Tree Inference","authors":"Sourya Bhattacharyya, J. Mukhopadhyay","doi":"10.1007/978-3-319-38827-4_8","DOIUrl":"https://doi.org/10.1007/978-3-319-38827-4_8","url":null,"abstract":"","PeriodicalId":371010,"journal":{"name":"International Conference on Algorithms for Computational Biology","volume":"1 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2016-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"121951649","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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