Pub Date : 2014-07-01DOI: 10.1007/978-3-319-07953-0_7
Ivo Hedtke, Ioana M. Lemnian, M. Müller-Hannemann, I. Grosse
{"title":"On Optimal Read Trimming in Next Generation Sequencing and Its Complexity","authors":"Ivo Hedtke, Ioana M. Lemnian, M. Müller-Hannemann, I. Grosse","doi":"10.1007/978-3-319-07953-0_7","DOIUrl":"https://doi.org/10.1007/978-3-319-07953-0_7","url":null,"abstract":"","PeriodicalId":371010,"journal":{"name":"International Conference on Algorithms for Computational Biology","volume":"59 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2014-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"124639761","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2014-07-01DOI: 10.1007/978-3-319-07953-0_8
B. Iancu, Diana-Elena Gratie, Sepinoud Azimi, I. Petre
{"title":"On the Implementation of Quantitative Model Refinement","authors":"B. Iancu, Diana-Elena Gratie, Sepinoud Azimi, I. Petre","doi":"10.1007/978-3-319-07953-0_8","DOIUrl":"https://doi.org/10.1007/978-3-319-07953-0_8","url":null,"abstract":"","PeriodicalId":371010,"journal":{"name":"International Conference on Algorithms for Computational Biology","volume":"11 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2014-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"122273818","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2014-07-01DOI: 10.1007/978-3-319-07953-0_3
Liana Amaya Moreno, Ozlem Defterli, A. Fügenschuh, G. Weber
{"title":"Vester's Sensitivity Model for Genetic Networks with Time-Discrete Dynamics","authors":"Liana Amaya Moreno, Ozlem Defterli, A. Fügenschuh, G. Weber","doi":"10.1007/978-3-319-07953-0_3","DOIUrl":"https://doi.org/10.1007/978-3-319-07953-0_3","url":null,"abstract":"","PeriodicalId":371010,"journal":{"name":"International Conference on Algorithms for Computational Biology","volume":"156 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2014-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"116050103","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2014-07-01DOI: 10.1007/978-3-319-07953-0_1
Michael Y. Galperin, E. Koonin
{"title":"Comparative Genomics Approaches to Identifying Functionally Related Genes","authors":"Michael Y. Galperin, E. Koonin","doi":"10.1007/978-3-319-07953-0_1","DOIUrl":"https://doi.org/10.1007/978-3-319-07953-0_1","url":null,"abstract":"","PeriodicalId":371010,"journal":{"name":"International Conference on Algorithms for Computational Biology","volume":"62 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2014-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"115936773","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2014-07-01DOI: 10.1007/978-3-319-07953-0_4
A. Chateau, R. Giroudeau
{"title":"Complexity and Polynomial-Time Approximation Algorithms around the Scaffolding Problem","authors":"A. Chateau, R. Giroudeau","doi":"10.1007/978-3-319-07953-0_4","DOIUrl":"https://doi.org/10.1007/978-3-319-07953-0_4","url":null,"abstract":"","PeriodicalId":371010,"journal":{"name":"International Conference on Algorithms for Computational Biology","volume":"8 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2014-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"115131208","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2014-07-01DOI: 10.1007/978-3-319-07953-0_18
D. Polychronopoulos, Anastasia Krithara, Christoforos Nikolaou, G. Paliouras, Y. Almirantis, George Giannakopoulos
{"title":"Analysis and Classification of Constrained DNA Elements with N-gram Graphs and Genomic Signatures","authors":"D. Polychronopoulos, Anastasia Krithara, Christoforos Nikolaou, G. Paliouras, Y. Almirantis, George Giannakopoulos","doi":"10.1007/978-3-319-07953-0_18","DOIUrl":"https://doi.org/10.1007/978-3-319-07953-0_18","url":null,"abstract":"","PeriodicalId":371010,"journal":{"name":"International Conference on Algorithms for Computational Biology","volume":"47 4-5 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2014-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"116401031","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2014-07-01DOI: 10.1007/978-3-319-07953-0_16
Amina Noor, A. Ahmad, B. Wajid, E. Serpedin, M. Nounou, H. Nounou
{"title":"A Closed-Form Solution for Transcription Factor Activity Estimation Using Network Component Analysis","authors":"Amina Noor, A. Ahmad, B. Wajid, E. Serpedin, M. Nounou, H. Nounou","doi":"10.1007/978-3-319-07953-0_16","DOIUrl":"https://doi.org/10.1007/978-3-319-07953-0_16","url":null,"abstract":"","PeriodicalId":371010,"journal":{"name":"International Conference on Algorithms for Computational Biology","volume":"1 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2014-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"130901062","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2014-07-01DOI: 10.1007/978-3-319-07953-0_12
C. N. Lintzmayer, Zanoni Dias
{"title":"On Sorting of Signed Permutations by Prefix and Suffix Reversals and Transpositions","authors":"C. N. Lintzmayer, Zanoni Dias","doi":"10.1007/978-3-319-07953-0_12","DOIUrl":"https://doi.org/10.1007/978-3-319-07953-0_12","url":null,"abstract":"","PeriodicalId":371010,"journal":{"name":"International Conference on Algorithms for Computational Biology","volume":"27 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2014-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"127388183","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2014-07-01DOI: 10.1007/978-3-319-07953-0_21
Inken Wohlers, Mathilde Le Boudic-Jamin, H. Djidjev, G. Klau, R. Andonov
{"title":"Exact Protein Structure Classification Using the Maximum Contact Map Overlap Metric","authors":"Inken Wohlers, Mathilde Le Boudic-Jamin, H. Djidjev, G. Klau, R. Andonov","doi":"10.1007/978-3-319-07953-0_21","DOIUrl":"https://doi.org/10.1007/978-3-319-07953-0_21","url":null,"abstract":"","PeriodicalId":371010,"journal":{"name":"International Conference on Algorithms for Computational Biology","volume":"19 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2014-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"116144982","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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