Pub Date : 2019-05-28DOI: 10.1007/978-3-030-18174-1_15
A. Rahman, L. Pachter
{"title":"Transcript Abundance Estimation and the Laminar Packing Problem","authors":"A. Rahman, L. Pachter","doi":"10.1007/978-3-030-18174-1_15","DOIUrl":"https://doi.org/10.1007/978-3-030-18174-1_15","url":null,"abstract":"","PeriodicalId":371010,"journal":{"name":"International Conference on Algorithms for Computational Biology","volume":"47 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2019-05-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"126884581","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2019-05-28DOI: 10.1007/978-3-030-18174-1_16
Peng Xiao, Xingyu Cai, S. Rajasekaran
{"title":"Efficient Algorithms for Finding Edit-Distance Based Motifs","authors":"Peng Xiao, Xingyu Cai, S. Rajasekaran","doi":"10.1007/978-3-030-18174-1_16","DOIUrl":"https://doi.org/10.1007/978-3-030-18174-1_16","url":null,"abstract":"","PeriodicalId":371010,"journal":{"name":"International Conference on Algorithms for Computational Biology","volume":"1 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2019-05-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"129814235","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2019-05-28DOI: 10.1007/978-3-030-18174-1_9
Christopher Wright, S. Krishnamoorthy, Milind Kulkarni
{"title":"MULKSG: MULtiple K Simultaneous Graph Assembly","authors":"Christopher Wright, S. Krishnamoorthy, Milind Kulkarni","doi":"10.1007/978-3-030-18174-1_9","DOIUrl":"https://doi.org/10.1007/978-3-030-18174-1_9","url":null,"abstract":"","PeriodicalId":371010,"journal":{"name":"International Conference on Algorithms for Computational Biology","volume":"7 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2019-05-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"116842636","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2018-06-25DOI: 10.1007/978-3-319-91938-6_11
J. Silvestre-Ryan, I. Holmes
{"title":"Consensus Decoding of Recurrent Neural Network Basecallers","authors":"J. Silvestre-Ryan, I. Holmes","doi":"10.1007/978-3-319-91938-6_11","DOIUrl":"https://doi.org/10.1007/978-3-319-91938-6_11","url":null,"abstract":"","PeriodicalId":371010,"journal":{"name":"International Conference on Algorithms for Computational Biology","volume":"13 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2018-06-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"115576287","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2018-06-25DOI: 10.1007/978-3-319-91938-6_3
Andreas D. M. Gunawan
{"title":"Solving the Tree Containment Problem for Reticulation-Visible Networks in Linear Time","authors":"Andreas D. M. Gunawan","doi":"10.1007/978-3-319-91938-6_3","DOIUrl":"https://doi.org/10.1007/978-3-319-91938-6_3","url":null,"abstract":"","PeriodicalId":371010,"journal":{"name":"International Conference on Algorithms for Computational Biology","volume":"157 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2018-06-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"123263067","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2018-06-25DOI: 10.1007/978-3-319-91938-6_6
K. L. Brito, A. Oliveira, Ulisses Dias, Zanoni Dias
{"title":"Heuristics for the Sorting Signed Permutations by Reversals and Transpositions Problem","authors":"K. L. Brito, A. Oliveira, Ulisses Dias, Zanoni Dias","doi":"10.1007/978-3-319-91938-6_6","DOIUrl":"https://doi.org/10.1007/978-3-319-91938-6_6","url":null,"abstract":"","PeriodicalId":371010,"journal":{"name":"International Conference on Algorithms for Computational Biology","volume":"3 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2018-06-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"124815139","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2018-06-25DOI: 10.1007/978-3-319-91938-6_1
T. Akutsu
{"title":"Algorithms for Analysis and Control of Boolean Networks","authors":"T. Akutsu","doi":"10.1007/978-3-319-91938-6_1","DOIUrl":"https://doi.org/10.1007/978-3-319-91938-6_1","url":null,"abstract":"","PeriodicalId":371010,"journal":{"name":"International Conference on Algorithms for Computational Biology","volume":"33 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2018-06-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"133512464","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2018-06-25DOI: 10.1007/978-3-319-91938-6_7
Guilherme Henrique Santos Miranda, C. N. Lintzmayer, Zanoni Dias
{"title":"Sorting Permutations by Limited-Size Operations","authors":"Guilherme Henrique Santos Miranda, C. N. Lintzmayer, Zanoni Dias","doi":"10.1007/978-3-319-91938-6_7","DOIUrl":"https://doi.org/10.1007/978-3-319-91938-6_7","url":null,"abstract":"","PeriodicalId":371010,"journal":{"name":"International Conference on Algorithms for Computational Biology","volume":"18 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2018-06-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"117291391","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2018-06-25DOI: 10.1007/978-3-319-91938-6_5
A. O. Alexandrino, C. N. Lintzmayer, Zanoni Dias
{"title":"Approximation Algorithms for Sorting Permutations by Fragmentation-Weighted Operations","authors":"A. O. Alexandrino, C. N. Lintzmayer, Zanoni Dias","doi":"10.1007/978-3-319-91938-6_5","DOIUrl":"https://doi.org/10.1007/978-3-319-91938-6_5","url":null,"abstract":"","PeriodicalId":371010,"journal":{"name":"International Conference on Algorithms for Computational Biology","volume":"331 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2018-06-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"120955505","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2018-06-25DOI: 10.1007/978-3-319-91938-6_8
S. P. Tsarev, M. Senashova, M. Sadovsky
{"title":"Fast Algorithm for Vernier Search of Long Repeats in DNA Sequences with Bounded Error Density","authors":"S. P. Tsarev, M. Senashova, M. Sadovsky","doi":"10.1007/978-3-319-91938-6_8","DOIUrl":"https://doi.org/10.1007/978-3-319-91938-6_8","url":null,"abstract":"","PeriodicalId":371010,"journal":{"name":"International Conference on Algorithms for Computational Biology","volume":"94 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2018-06-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"126226626","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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