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A century of research on micro-organisms from the inland waters of the largest Mediterranean island 一个世纪以来对地中海最大岛屿内陆水域微生物的研究
Q3 Earth and Planetary Sciences Pub Date : 2022-12-27 DOI: 10.4081/aiol.2022.11033
F. Marrone, Luigi Naselli-Flores
The first studies on the micro-organisms inhabiting Sicilian inland waters date back to the middle of the XIX century. However, these were based on single samples and mainly addressed at compiling faunistic and floristic inventories. It was in the first decades of the XX century that the first methodical studies were performed, which focussed on assessing microbial diversity in saline and hypersaline inland waters. Studies on plankton dynamics in ponds and reservoirs of the island started at the beginning of the 1980s and, since the end of the 1990s, temporary waters have also been intensively sampled, especially as regards phytoplankton and micro-crustaceans. These intensified sampling efforts contributed to increasing our knowledge of the composition, structure and functioning of the planktic compartment. On the contrary, studies on benthic microflora and fauna are still numerically scarce and mostly based on occasional collections. Also, running waters have received little attention and the methodical analysis of their micro-organisms is still in its infancy.
对居住在西西里内陆水域的微生物的首次研究可以追溯到19世纪中期。然而,这些都是基于单一样本,主要用于汇编动物区系和植物区系目录。正是在二十世纪的头几十年,进行了第一次系统的研究,重点是评估盐水和高盐内陆水域的微生物多样性。对该岛池塘和水库中浮游生物动态的研究始于20世纪80年代初,自20世纪90年代末以来,还对临时水域进行了密集采样,特别是对浮游植物和微型甲壳类动物进行了采样。这些加强的采样工作有助于增加我们对浮游生物隔室的组成、结构和功能的了解。相反,对海底微生物区系和动物群的研究在数量上仍然很少,而且大多是基于偶尔的收集。此外,流水很少受到关注,对其微生物的系统分析仍处于初级阶段。
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引用次数: 0
Building a local reference library for metabarcoding survey of lake macrobenthos: oligochaetes and chironomids from Lake Maggiore 马焦雷湖大型底栖动物寡毛纲和手拟纲元条形码调查参考库的建立
Q3 Earth and Planetary Sciences Pub Date : 2022-12-27 DOI: 10.4081/aiol.2022.11051
S. Zaupa, D. Fontaneto, Raffaella Sabatino, A. Boggero
This study represents a first reference database of genetic diversity of macroinvertebrates for a barcoding marker for Lake Maggiore, focusing on the two dominant groups of the littoral benthic fauna (chironomids and oligochaetes), commonly used for biological monitoring of freshwater lakes. Sediment samples were sorted at the stereomicroscope and single animals were cut in two pieces, one piece to be used for morphological identification and one piece for DNA extraction. This study allowed us to collect and identify 427 organisms: 309 oligochaetes belonging to 27 identifiable taxa and 118 chironomid larvae belonging to 26 identifiable taxa. Four families of oligochaetes: Naididae, Lumbricidae, Lumbriculidae, and Enchytraeidae and five subfamilies of Chironomidae: Chironominae, Tanypodinae, Orthocladiinae, Diamesinae, and Prodiamesinae were found. The extraction and amplification of the DNA covered a total of 10 oligochaete taxa. For 7 of them (Ophidonais serpentina, Uncinais uncinata, Vejdovskyella intermedia, Psammoryctides barbatus, Limnodrilus hoffmeisteri, Tubifex tubifex, and Bothrioneurum vejdovskyanum), we found other sequences in GenBank to compare genetic similarities with available data. For the other taxa (Lumbriculidae, and Enchytraeidae, and Nais sp.) no best hits were found in GenBank. The extraction and amplification of the DNA covered a total of 21 chironomid taxa. For ten species (Cladotanytarsus mancus, Cladotanytarsus atridorsum, Polypedilum scalaenum, Polypedilum nubeculosum, Benthalia carbonaria, Phaenopsectra flavipes, Clinotanypus nervosus, Paracladopelma laminatum, Cryptochironomus rostratus and Parakiefferiella finnmarkica) sequences were available in GenBank to compare genetic similarities. For the other taxa (Cryptochironomus sp., Demicryptochironomus vulneratus, Chironomus sp., Stictochironomus sp., Orthocladius sp., Cricotopus sp., Eukiefferiella sp., Procladius sp., Diamesa sp., Potthastia sp., and Monodiamesa bathyphila) no best hits were found in GenBank. For chironomids, DNA taxonomy revealed the existence of several species complexes. Covering more populations and more genetic markers for those taxa within a rationale of integrative taxonomy could solve the taxonomic problems and provide a reliable description of diversity.
本研究建立了马吉奥雷湖大型无脊椎动物遗传多样性的第一个条形码标记参考数据库,重点研究了淡水湖泊生物监测中常用的两个优势底栖动物类群(chironomids和oligochetes)。在体视显微镜下对沉积物样品进行分类,将单个动物切成两段,一段用于形态鉴定,一段用于DNA提取。本研究共收集鉴定427种生物,其中寡毛纲309种隶属于27个可识别分类群,摇尾纲幼虫118种隶属于26个可识别分类群。发现了少毛动物4科,分别为小毛动物科、小毛动物科、小毛动物科和小毛动物科;手毛动物5亚科,分别为手毛动物科、小毛动物科、直毛动物科、小毛动物科和小毛动物科。DNA的提取和扩增共覆盖了10个寡毛纲分类群。对其中7种(蛇尾蛇、Uncinais uncinata、Vejdovskyella intermedium、Psammoryctides barbatus、Limnodrilus hoffmeisteri、Tubifex Tubifex和Bothrioneurum vejdovskyanum),我们在GenBank中找到了其他序列,并与现有数据进行了遗传相似性比较。其他分类群(蚓科、Enchytraeidae和Nais sp.)在GenBank中没有找到最佳匹配。DNA的提取和扩增共覆盖21个摇尾虫分类群。在GenBank中对10个物种(mancus枝塔塔跗、atridorsum枝塔塔跗、scaladium polydilum、nubeculosum polydilum)、Benthalia carbonaria、Phaenopsectra flavipes、Clinotanypus neurosus、Paracladopelma laminatum、Cryptochironomus rostratus和Parakiefferiella finnmarkica)序列进行遗传相似性比较。其他分类群(Cryptochironomus sp.、Demicryptochironomus、Chironomus sp.、Stictochironomus sp.、Orthocladius sp.、Cricotopus sp.、Eukiefferiella sp.、Procladius sp.、Diamesa sp.、Potthastia sp.和Monodiamesa bathyphila .)在GenBank中未发现最佳匹配。对于手摇鱼,DNA分类显示存在多个物种复合体。在综合分类学的基本原理下,覆盖更多的种群和更多的遗传标记可以解决分类问题,并提供可靠的多样性描述。
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引用次数: 0
Remote sensing of sea surface salinity: A bibliometric analysis 海面盐度遥感:文献计量学分析
Q3 Earth and Planetary Sciences Pub Date : 2022-12-27 DOI: 10.4081/aiol.2022.10862
Flavia Zanon, C. Cesarano, Y. Cotroneo, G. Fusco, G. Budillon, G. Aulicino
In recent years, rapid advances in technologies have allowed significant positive changes within the field of satellite observations of the global ocean. This paper reviews the available global scientific literature that focuses on the study of salinity by remote sensing, tracking its evolution and trends by combining social network analysis and bibliometrics. Furthermore, the study shows the relationships and co-occurrences between authors, countries and keywords retrieved from the abstracts and citations database provided by Scopus. An analysis of 581 publications has been carried out. The achieved results, which highlight a worldwide increase in scientific interest in this field over the last decade, may constitute a useful tool for a global vision and for a potential improvement in the international efforts employed in the study of salinity from remote sensing.
近年来,技术的快速进步使全球海洋卫星观测领域发生了重大的积极变化。本文回顾了现有的全球科学文献,这些文献侧重于通过遥感研究盐度,并结合社会网络分析和文献计量学跟踪其演变和趋势。此外,该研究还显示了作者、国家和从Scopus提供的摘要和引文数据库中检索到的关键词之间的关系和共同出现。对581份出版物进行了分析。所取得的成果突出表明,在过去十年中,全世界对这一领域的科学兴趣有所增加,这可能是一个有用的工具,有助于全球视野,并有助于潜在地改进遥感盐度研究的国际努力。
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引用次数: 0
Deep-sea benthic ecosystems waste nothing and recycle everything, even viruses 深海底栖生物生态系统不浪费任何东西,回收一切,甚至包括病毒
Q3 Earth and Planetary Sciences Pub Date : 2022-12-27 DOI: 10.4081/aiol.2022.11053
C. Corinaldesi
Viruses are the most abundant biological entities of the global ocean and have a pervasive role in marine ecosystems because, being a major cause of mortality, they module the functioning of food webs, and biogeochemical cycling. This role is due not only to their ability to infect and lyse marine organisms but also to the decomposition of their particles (viral decay). The organic matter of viral origin, indeed, can be recycled by benthic organisms thus representing an additional important food source for their metabolism, especially in deep-sea sediments, characterized by very low availability of trophic resources. This short note will present an overview of the available information on viral decay in deep-sea benthic ecosystems.
病毒是全球海洋中最丰富的生物实体,在海洋生态系统中发挥着无处不在的作用,因为它们是导致死亡的主要原因,它们使食物网和生物地球化学循环的功能模块化。这种作用不仅是由于它们感染和溶解海洋生物的能力,而且是由于它们的颗粒分解(病毒衰变)。实际上,来自病毒的有机物可以被底栖生物循环利用,从而为它们的新陈代谢提供了另一个重要的食物来源,特别是在营养资源可得性非常低的深海沉积物中。这篇短文将概述有关深海底栖生态系统中病毒衰变的现有信息。
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引用次数: 0
Spatio-temporal regularities of the White Sea ice regime formation 白海冰况形成的时空规律
Q3 Earth and Planetary Sciences Pub Date : 2022-05-30 DOI: 10.4081/aiol.2022.9849
Vyacheslav Nikolaevich Baklagin
The paper presents the spatial and temporal regularities of the course of ice processes in the White Sea, derived from satellite data observations for the period 2004-2020. The dependences, defining indicative dates of the White Sea ice regime of air temperature regime over its water area are given, which can be used for diagnostic and prognostic purposes. It is noted that the connection with the Barents Sea has a significant impact on the course of the ice regime of the White Sea, in particular, on the beginning freeze-up phase and the beginning break-up phase. Comparative analysis of seasonal variations in ice coverage in the White Sea indicates that the course of the ice regime in recent years generally corresponds to how it happened in the second half of the XX century, however, a decrease in average values of ice coverage by 3-7% was recorded throughout the entire period of ice phenomena, which is in line with the global warming trend. Also, the results of the effects of abnormally warm winter on the formation of the White Sea ice regime of 2019-2020 are presented.
本文利用2004-2020年的卫星观测资料,分析了白海冰过程的时空变化规律。给出了白海海冰状态的依赖关系,定义了其水域上空空气温度状态的指示性日期,可用于诊断和预测目的。值得注意的是,与巴伦支海的联系对白海冰况的进程,特别是对开始的冻结阶段和开始的破裂阶段有重大影响。对白海冰覆盖季节变化的对比分析表明,近年来的冰况过程与20世纪下半叶的冰况过程基本一致,但在整个冰现象时期,冰覆盖的平均值下降了3-7%,这与全球变暖趋势一致。并给出了异常暖冬对2019-2020年白海冰况形成的影响结果。
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引用次数: 1
Distribution, abundance, and health indicators of the critically endangered coral species Acropora cervicornis in Los Roques National Park, 2014 2014年Los Roques国家公园极度濒危珊瑚物种鹿角珊瑚的分布、丰度和健康指标
Q3 Earth and Planetary Sciences Pub Date : 2021-12-29 DOI: 10.4081/aiol.2021.10005
S. J. Martínez, Francoise Cavada-Blanco, J. Cappelletto, Esteban Agudo-Adriani, Croquer Aldo
Acropora cervicornis is one of the most important coral species in shallow reefs of the Caribbean as it provides habitat and structural complexity to several species of invertebrates and fish. However, the distribution range of A. cervicornis has shrunk and collapsed considerably during the last five decades, due to a combination of factors including the increase of disease prevalence, storm frequency, and anthropogenic threats. Despite being classed as “Critically Endangered” in the IUCN Red List, information regarding its population status and condition across large Caribbean coralline areas is limited. Herein we conducted the first Marine Protected Area (MPA) scale survey for this species at the Los Roques archipelago, which included visual census across 127 sites to determine the abundance, spatial distribution, habitat type (i.e., leeward, windward), and patch morphology of A. cervicornis (i.e., continuous, dispersed, scatter, isolated). We selected 11 sites, where this species was predicted and reported to be ubiquitous, to determine live A. cervicornis cover, its recent and old mortality cover, and white band disease prevalence as proxies for coral health. For this, four 25-m long photomosaics were analysed at each site. We found Acropora cervicornis in only 29% of the surveyed sites; indicating that this species currently has a narrow and very restricted distribution in Los Roques and suggesting that either this species is rare or has declined over the past decades within the MPA. Dispersed and scattered patches prevailed upon continuous patches, which only occurred in two of the surveyed sites. Moreover, these patches were located near the largest human population settlements, and inside the low protection zones of the MPA where fishing and touristic activities are permitted. The photomosaic survey showed that more than 75% A. cervicornis patches showed an average live cover above 27%, low prevalence of white band disease (<7%), and low macroalgal abundance (<10%); suggesting that Los Roques still holds healthy populations. Our results indicate that the persistence of this species urgently requires re-evaluating current MPA zoning, especially following recent evidence of overfishing and inadequate law enforcement. This study provides a baseline of A. cervicornis populations in Los Roques and Southern Caribbean that can be later used for local population management and conservation.
颈角Acropora cervicornis是加勒比海浅海珊瑚礁中最重要的珊瑚物种之一,因为它为几种无脊椎动物和鱼类提供了栖息地和结构复杂性。然而,在过去的50年里,由于疾病流行率的增加、风暴频率的增加和人为威胁的综合因素,颈喙蠓的分布范围已经大大缩小和崩溃。尽管在世界自然保护联盟的红色名录中被列为“极度濒危”,但关于其在加勒比海大型珊瑚区域的人口状况和状况的信息有限。本文首次在洛斯罗克斯群岛(Los Roques archipelago)对该物种进行了海洋保护区(MPA)尺度的调查,包括对127个地点的目测普查,以确定颈喙沙蜥的丰度、空间分布、栖息地类型(背风、迎风)和斑块形态(连续、分散、分散、孤立)。我们选择了11个预测和报告该物种普遍存在的地点,以确定活的颈喙拟沙蚕覆盖,其最近和旧的死亡率覆盖,以及白带病流行率作为珊瑚健康的代理。为此,在每个地点分析了四幅25米长的显微摄影作品。我们只在29%的调查地点发现了颈喙Acropora;这表明该物种目前在洛斯罗克的分布范围很窄,而且非常有限,这表明该物种要么很罕见,要么在过去几十年里在海洋保护区内有所减少。分散斑块和散点斑块优于连续斑块,仅在2个调查点出现。此外,这些斑块位于最大的人类住区附近,以及在海洋保护区允许捕鱼和旅游活动的低保护区内。调查结果显示,75%以上的斑胸草斑块平均活盖度在27%以上,白带病患病率低(<7%),大藻丰度低(<10%);这表明洛斯罗克斯岛仍然有健康的人口我们的研究结果表明,该物种的持久性迫切需要重新评估目前的MPA分区,特别是在最近过度捕捞和执法不力的证据之后。本研究提供了洛斯罗克和南加勒比地区颈喙拟南蚊种群的基线,可用于当地种群管理和保护。
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引用次数: 0
A biodiversity survey on the planktonic protistan grazers of the Gulf of Naples (Italy) 那不勒斯湾(意大利)浮游原生食草动物的生物多样性调查
Q3 Earth and Planetary Sciences Pub Date : 2021-12-21 DOI: 10.4081/aiol.2021.10018
Gabriele Del Gaizo, L. Russo, M. Abagnale, Angela Buondonno, M. Furia, S. Saviano, Mauro Vargiu, F. Conversano, F. Margiotta, M. Saggiomo, I. Percopo, D. D’Alelio
Plankton communities include both unicellular and multicellular organisms. An important unicellular component is represented by those protists (i.e., unicellular eukaryotes) that are non-strictly autotrophic organisms and consume bacteria and other protists. These organisms are an important link between primary producers and metazoans and are usually known as microzooplankton, protozooplankton, or mixoplankton, as many of them couple phagotrophic and photoautotrophic behaviours. Herein we report on the diversity of these organisms sampled at two sampling sites (coastal and offshore stations), at two depths (0 and 10 m), in the Gulf of Naples during the early autumn of 2020. Despite efforts to list plankton biodiversity of primary producers and metazoan grazers made in this area so far, protistan grazers are still poorly investigated and previous information date back to decades ago. Our survey identified dinoflagellates and oligotrich ciliates as the most abundant groups, while tintinnids were less quantitatively relevant. The taxonomic composition in samples investigated herein remarked that reported by previous studies, with the sole exception of the tintinnid Ascampbeliella armilla, which was never reported before. A coastal-offshore gradient in the taxonomical composition of protistan grazers was also observed, with some species more abundant within coastal waters and other better thriving in offshore ones. Surface and sub-surface communities also differed in terms of species composition, with the deeper communities in the two sites being more similar reciprocally than with communities at the surface. These differences were associated with distinct environmental conditions, such as light availability, as well with the standing feeding environment, arising potential implications in the functioning of the planktonic food web at the local scale.
浮游生物群落包括单细胞生物和多细胞生物。一个重要的单细胞成分是由那些非严格自养生物的原生生物(即单细胞真核生物)代表的,它们消耗细菌和其他原生生物。这些生物是初级生产者和后生动物之间的重要联系,通常被称为微型浮游动物、原浮游动物或混合浮游动物,因为它们中的许多结合了自噬和光自养行为。在此,我们报告了2020年初秋在那不勒斯湾两个深度(0米和10米)的两个采样点(海岸和近海站)采样的这些生物的多样性。尽管到目前为止,该地区已努力列出初级生产者和后生动物食草动物的浮游生物生物多样性,但对原生食草动物仍然调查不足,以前的信息可以追溯到几十年前。我们的调查确定,甲藻和纤毛虫是数量最多的类群,而丁藻在数量上的相关性较小。本文调查的样本中的分类组成与先前研究报告的一致,唯一的例外是以前从未报道过的丁氏蛔虫。还观察到原生食草动物分类组成的沿海-近海梯度,一些物种在沿海水域更为丰富,另一些物种在近海更为繁荣。表层和亚表层的群落在物种组成方面也有所不同,两个地点更深的群落比表层的群落更相似。这些差异与不同的环境条件有关,如光照可用性,以及站立的进食环境,这对当地浮游生物食物网的功能产生了潜在的影响。
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引用次数: 2
Diet and isotopic niche dimensions of predatory fish in two estuaries with different degrees of anthropogenic disturbances: a case study of Wami and Pangani Tanzanian coastal estuaries 具有不同程度人为干扰的两个河口掠食性鱼类的饮食和同位素生态位维度:以Wami和Pangani坦桑尼亚沿海河口为例
Q3 Earth and Planetary Sciences Pub Date : 2021-12-21 DOI: 10.4081/aiol.2021.9987
A. Mwijage, Theresia John Lyasenga, D. Shilla, John Andrew Marco Mahugija, L. Gaspare, Prosper Laurent Mfilinge, D. Shilla
Diverse anthropogenic activities including alteration of hydrological regime and agricultural development in the upstream of the river catchments modify the structural components and ecological roles of the species in estuarine ecosystems. The present study compared the diet, carbon (δ13C) and nitrogen (δ15N) isotopic signals, trophic niches and metrics of trophic redundancy of predatory fish and their potential phytodetritivore prey-fish between two estuaries with different degrees of anthropogenic disturbances. The δ13C and δ15N signals, Bayesian mixing models and stomach content analyses were adopted. It was revealed that the diet among the predators Arius africanus, Epinephelus coioides, Sillago sihama and Pomadasys argenteus and their isotopic signals including their phytodetritivore-prey, Valamugil buchanani were significantly different between Wami and Pangani estuaries (PERMANOVA, Pseudo –F ≥ 3.1, p = 0.05). The total isotopic niche area between estuaries accounted by the comparable Bayesian standard ellipse area (SEAb) was significantly smaller in Wami than that of Pangani (t-test, t = 4.3, p < .001). The ANOVA test further confirmed significant variation in SEAb among fish populations in two estuaries (F = 27.84, p < 0.001). The Layman metric indices of trophic diversity and redundancy of Wami estuary were substantially smaller than those observed at Pangani estuary. These findings mean that despite Wami estuary being under conservation status, the extent of disturbances in the upstream is high enough to induce the ecological changes at the base of the food web, subsequently cascading its effect up to the higher-order consumers of the ecosystem. As a result, the ecological redundancy and ecosystem complexity of Wami is somewhat compromised relative to that of Pangani estuary. Therefore, the degree of anthropogenic disturbances in river catchments affect differently the trophic niches of predatory and phytodetritivore fish and hence overall food web structures, trophic redundancy and complexity of estuarine ecosystems.
不同的人类活动,包括水文状况的改变和河流流域上游的农业发展,改变了物种在河口生态系统中的结构组成和生态作用。本研究比较了两个不同人为干扰程度的河口的食性鱼类及其潜在的植物营养猎物的饮食、碳(δ13C)和氮(δ15N)同位素信号、营养生态位和营养冗余指标。采用δ13C和δ15N信号、贝叶斯混合模型和胃内容物分析。结果表明,瓦米河口和潘加尼河口的捕食者非洲Arius anus、Epinephelus coioides、siillago sihama和Pomadasys argteus的食性及其同位素信号(包括它们的植物腐食猎物Valamugil buchanani)存在显著差异(PERMANOVA, Pseudo -F≥3.1,p = 0.05)。比较贝叶斯标准椭圆面积(SEAb)所占河口间总同位素生态位面积在瓦米显著小于潘加尼(t-检验,t = 4.3, p < .001)。方差分析进一步证实了两个河口鱼类种群之间SEAb的显著差异(F = 27.84, p < 0.001)。瓦米河口的营养多样性和冗余度的Layman度量指数明显小于潘加尼河口。这些发现意味着,尽管瓦米河口处于保护状态,但上游的干扰程度足以引起食物网底部的生态变化,随后将其影响级联到生态系统的高阶消费者。因此,瓦米河口的生态冗余度和生态系统复杂性相对于潘加尼河口有所降低。因此,河流流域的人为干扰程度对掠食性和植食性鱼类的营养生态位有不同的影响,从而影响了整体食物网结构、营养冗余和河口生态系统的复杂性。
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引用次数: 1
Coregonine fisheries in the eastern Gulf of Finland, Baltic Sea: history and current status 波罗的海芬兰湾东部的coregine渔业:历史与现状
Q3 Earth and Planetary Sciences Pub Date : 2021-12-15 DOI: 10.1127/adv_limnol/2021/0075
D. Bogdanov, D. Sendek, D. Lajus
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引用次数: 0
Rearing and stocking of coregonids: a comparison of aquaculture practices in Eurasia and North America coregonids的饲养和放养:欧亚大陆和北美水产养殖做法的比较
Q3 Earth and Planetary Sciences Pub Date : 2021-12-15 DOI: 10.1127/adv_limnol/2021/0073
J. Wanzenböck
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引用次数: 2
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