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Pestalotioid species associated with palm species from Southern China 中国南方棕榈类拟盘拟虫种
Q3 Environmental Science Pub Date : 2022-01-01 DOI: 10.5943/cream/12/1/18
YR Xiong, I. Manawasinghe, S.S.N. Maharachchikumbura, L. Lu, Zy Dong, MM Xiang, B. Xu
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引用次数: 2
Potential of keratinolytic fungi isolated from chicken and goat farms soil, North Sumatra 北苏门答腊鸡和山羊农场土壤中分离的溶角真菌的潜力
Q3 Environmental Science Pub Date : 2022-01-01 DOI: 10.5943/cream/12/1/2
R. Aritonang, J. Mamangkey, D. Suryanto, E. Munir, A. Hartanto
Efforts have been made to develop fungal isolates with the ability to degrade chicken feather waste. The goal of this study was to find and test the ability of keratinolytic fungi isolated from the soil around chicken and goat farms to degrade chicken feather waste. The keratinolytic fungi were preliminarily screened for their proteolytic activity on skim milk agar medium. The study obtained forty six isolates that were characterized based on the fungal colonies color or fungal morphotypes. Eight fungal isolates (A2, A7, A12, A18, A29, A31, K1, and K2) displayed considerable proteolytic activities and total degradation of chicken feather in the fermentation medium or feather meal broth in 10 days. Based on the molecular analysis, the species identity of potential isolates namely K2, and A18 were assigned as Yunnania carbonaria and Penicillium citrinum.
人们已经努力开发出能够降解鸡毛废料的真菌分离株。本研究的目的是寻找并测试从鸡场和山羊场周围土壤中分离的角朊酶真菌降解鸡毛废弃物的能力。初步筛选了溶角真菌在脱脂乳琼脂培养基上的蛋白水解活性。该研究获得了46株基于真菌菌落颜色或真菌形态的分离株。8株真菌A2、A7、A12、A18、A29、A31、K1和K2在发酵培养基或羽毛粉肉汤中均表现出较强的蛋白水解活性和10 d内对鸡毛的完全降解能力。基于分子分析,鉴定出潜在分离株K2和A18分别为云南炭黑青霉和柠檬青霉。
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引用次数: 1
Can the location of the isolation laboratory affect the generation of myxomycete data using moist chambers? An experiment in the Neotropics 分离实验室的位置是否会影响湿室黏菌数据的产生?新热带地区的一个实验
Q3 Environmental Science Pub Date : 2021-03-11 DOI: 10.5943/CREAM/11/1/6
C. Alvarado, A. W. Rollins, K. M. Gutiérrez, Pedro Rojas Camacho
The moist chamber technique, as it is used in myxomycete research, is an extremely useful method to optimize project resources. However, as it occurs with any laboratory-based protocol, the usefulness of this technique should be evaluated using contextual elements, most of which, are lacking in the literature. The present study evaluated the results obtained using the moist chamber technique with the same substrate material, synchronously, in two different laboratories in Costa Rica. Using climate data obtained at both isolation localities and microclimate data obtained directly from the moist chambers, an analysis of differences in results was attempted. Even though variations in results are intrinsic to biological surveys, the results presented herein suggested that some recorded differences could have been linked to the air humidity and the temperature of the moist chamber culture. Even though the two laboratories were only 30 km apart, an average difference of 8.5% in the values of the diversity indices was observed. Also, between 15% and 19% of the species recorded in the total dataset were only observed in one laboratory. In this manner, the present study is useful to keep in mind that myxomycete results using the moist chamber technique, can be extremely influenced by variables that are usually not considered in the general application of the protocol. Perhaps it is time to work on an optimized version of such useful technique.
湿室技术用于黏菌研究,是优化项目资源的一种非常有用的方法。然而,正如它发生在任何基于实验室的协议中一样,应该使用上下文元素来评估该技术的有用性,其中大多数在文献中是缺乏的。本研究评估了在哥斯达黎加的两个不同实验室同步使用相同基材的湿室技术获得的结果。利用隔离地点获得的气候数据和直接从湿室获得的小气候数据,试图分析结果的差异。尽管结果的变化是生物调查固有的,但本文提出的结果表明,一些记录的差异可能与空气湿度和湿室培养的温度有关。尽管两个实验室相距仅30 km,但多样性指数的平均值相差8.5%。此外,总数据集中记录的物种中有15%至19%仅在一个实验室中观察到。以这种方式,本研究有助于记住使用湿室技术的黏菌结果可能受到通常在一般应用程序中不考虑的变量的极大影响。也许是时候研究这种有用技术的优化版本了。
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引用次数: 3
CRISPR/Cas9: Contemporary designer nucleases for efficient genome editing in phytopathogenic fungi CRISPR/Cas9:植物病原真菌高效基因组编辑的当代设计核酸酶
Q3 Environmental Science Pub Date : 2021-01-01 DOI: 10.5943/cream/11/1/26
DL Harishchandra, K. Chethana, W. Zhang, QK Xing, J. Peng, S. Brooks, K. Hyde, XH Li, J. Yan
Plant diseases caused by fungal pathogens are one of the main factors contributing to severe economic losses due to reductions in yield and the quality of crops. Studying the fungal genes related to pathogenicity to reveal their infection mechanism through genome editing can play an important role in the management of these diseases. The clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR associated nuclease 9 (Cas9) system is a versatile tool for genome engineering which has recently been adopted for sequence specific regulation of gene expression in many plant pathogenic fungal genomes. It is the current scientific consensus point of view that this simple RNA guided genome editing tool is cheaper, easier to use, and is higher in gene modification efficiency than any other available gene editing tool. In this mini review, we discuss the molecular mechanisms underlying the CRISPR/Cas9 technique and its recent improvements and applications beyond gene editing. We discuss and summarize a few recent studies targeting phytopathogenic fungal genomes, potential applications, the remaining challenges, and future perspectives. Our analysis provides insights into how this method can be more widely applied to combat fungal phytopathogens.
由真菌病原体引起的植物病害是造成作物产量和质量下降而造成严重经济损失的主要因素之一。通过基因组编辑研究与致病性相关的真菌基因,揭示其感染机制,可以在这些疾病的管理中发挥重要作用。聚类规则间隔短回文重复序列(CRISPR)/CRISPR相关核酸酶9 (Cas9)系统是一种通用的基因组工程工具,最近被用于许多植物病原真菌基因组的序列特异性基因表达调控。目前科学界的共识是,这种简单的RNA引导的基因组编辑工具比其他任何可用的基因编辑工具都更便宜,更容易使用,并且基因修饰效率更高。在这篇综述中,我们讨论了CRISPR/Cas9技术的分子机制及其最近的改进和基因编辑以外的应用。我们讨论和总结了最近一些针对植物病原真菌基因组的研究,潜在的应用,仍然存在的挑战和未来的展望。我们的分析为这种方法如何更广泛地应用于对抗真菌植物病原体提供了见解。
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引用次数: 1
DNA-based species identification of Greek macromycetes 基于dna的希腊大型菌种鉴定
Q3 Environmental Science Pub Date : 2021-01-01 DOI: 10.5943/cream/11/1/28
G. Lagiotis, E. Topalidou, I. Bosmali, M. Osathanunkul, P. Madesis
Fungi comprise one of the largest and diverse groups of eukaryotes. Macromycetes, which are commonly known as mushrooms, include species in Basidiomycota and Ascomycota. Macromycetes are essential for ecosystem functioning and have high commercial value owing to their nutritional and medicinal properties. Despite the importance of macrofungi for the ecosystem and human welfare, macromycete diversity and phylogeny are poorly characterized, owing to the lack of molecular-based biodiversity descriptors supporting phenotypic classifications, especially for biodiversity rich countries such as Greece. In this study, we implemented a multi-marker DNA barcoding approach, utilizing the Internal Transcribed Spacer 1 (ITS1) and part of the 28S nuclear ribosomal Large Subunit (nrLSU) rDNA regions, for the molecular identification of representative Greek macromycetes. Our analysis involved 103 Greek macromycetes covering seven genera of Basidiomycota (Agaricus, Amanita, Boletus, Cantharellus, Lactarius, Pleurotus, and Russula) and one genus of Ascomycota (Morchella). Phylogenetic inference based on the generated rDNA sequences, revealed high DNA divergence among most of the examined macromycete genera, which formed discrete monophyletic groups. Our phylogenetic analysis, in accordance with previous studies in the field, further supports the early divergence of the Cantharellus clade, followed by the subsequent split of the Russulaceae from a sister clade formed by the Agaricus, Amanita, Boletus and Pleurotus genera.
真菌是真核生物中最大和最多样化的群体之一。大型菌,通常被称为蘑菇,包括担子菌门和子囊菌门。大型真菌对生态系统功能至关重要,因其营养和药用价值而具有很高的商业价值。尽管大型真菌对生态系统和人类福利具有重要意义,但由于缺乏支持表型分类的基于分子的生物多样性描述符,特别是在希腊等生物多样性丰富的国家,大型真菌的多样性和系统发育特征很差。在这项研究中,我们实施了一种多标记DNA条形码方法,利用内部转录间隔器1 (ITS1)和部分28S核糖体大亚基(nrLSU) rDNA区域,对具有代表性的希腊大型真菌进行分子鉴定。我们分析了103种希腊大型真菌,涵盖担子菌科7属(Agaricus, Amanita, Boletus, Cantharellus, Lactarius, Pleurotus和Russula)和子囊菌科1属(Morchella)。基于生成的rDNA序列的系统发育推断显示,大多数所研究的大型真菌属之间存在高度的DNA差异,形成离散的单系群。我们的系统发育分析,根据之前的研究,进一步支持了cantharelllus分支的早期分化,随后Russulaceae从Agaricus, Amanita, Boletus和Pleurotus属组成的姐妹分支中分裂出来。
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引用次数: 1
Structural organization of the mating-type locus in Clade 3 of Fusarium solani species complex and development of PCR protocol for identification of MAT idiomorphs 茄枯菌种复合体3枝交合型位点的结构组织及MAT自形物PCR鉴定方案的建立
Q3 Environmental Science Pub Date : 2021-01-01 DOI: 10.5943/cream/11/1/12
Ssc Guimarães, FP Matteoli, F. Pedrosa-Silva, K. Matos, LH Pfenning
Mating compatibility in ascomycetes is regulated by the mating-type locus. In this study, whole-genome sequence data were used to characterize the structural organization of the MAT loci in two heterothallic and one homothallic species of Clade 3 from Fusarium solani species complex FSSC. Based on sequence analysis, we identified MAT1-1 idiomorph in Fusarium paranaense with three genes, MAT1-2 idiomorph in F. solani f. sp. piperis with two genes, and both MAT idiomorphs in F. striatum, homothallic species. The structural organization of the MAT1-1 locus in F. paranaense, like the MAT1-2 locus in F. striatum and F. solani f. sp. piperis was different to those of other FSSC-Clade 2 and Fusarium species. Moreover, the mating-type genes sequences in FSSC-Clade 3 were dissimilar resulting in a distinct amino acid profile. Despite these differences in the studied species, the process of sexual reproduction is not affected. Besides, we developed primers and applied in a reliable PCR protocol to MAT idiomorph identification. This paper presents the first investigation of the structural organization of the MAT locus from FSSC-Clade 3. The availability of MAT genes sequences can give support to downstream functional studies of individual mating-type transcripts. The MAT primers will be useful to assess the reproductive mode in other strains of FSSC-Clade 3, and to facilitate the application of the biological concept through sexual crosses.
子囊菌的交配相容性受交配型基因座的调节。本研究利用全基因组序列数据,对茄枯菌(Fusarium solani)种复合体FSSC进化枝3的两个异thalic种和一个homothalic种的MAT位点的结构组织进行了表征。通过序列分析,鉴定出副镰刀菌MAT1-1自形态为3个基因,茄茄镰刀菌MAT1-2自形态为2个基因,同属种纹状镰刀菌MAT1-2自形态为2个基因。赤霉病菌MAT1-1基因座的结构组织与纹状体赤霉病菌和胡椒赤霉病菌的MAT1-2基因座一样,与其他FSSC-Clade 2和镰刀菌不同。此外,FSSC-Clade 3的交配型基因序列不同,导致氨基酸谱不同。尽管所研究的物种存在这些差异,但有性繁殖的过程并未受到影响。此外,我们还开发了引物,并应用于可靠的PCR方案来鉴定MAT的特异形态。本文首次对FSSC-Clade 3中MAT位点的结构组织进行了研究。MAT基因序列的可用性可以为个体交配型转录物的下游功能研究提供支持。MAT引物可用于FSSC-Clade 3其他菌株的生殖模式鉴定,并有助于通过有性杂交将生物学概念应用于其他菌株。
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引用次数: 0
Rediscovery of Clathrus argentinus and new contributions to the gasteroid mycobiota of Paraguay 阿根廷蛛的重新发现和对巴拉圭蛛形菌群的新贡献
Q3 Environmental Science Pub Date : 2021-01-01 DOI: 10.5943/cream/11/1/8
M. Campi
Clathrus argentinus was described as a new species from central and northern Argentina in 1985. Thirty-five years later, we report C. argentinus from Paraguay. Along with this interesting discovery, eight other new records of gasteroid fungi viz. Blumenavia rhacodes, Calvatia cyathiformis, Cyathus earlei, Geastrum pusillipilosum, Lysurus sphaerocephalum, Myriostoma calongei, Phallus campanulatus and Tulostoma pygmaeum are reported from the country. In addition, the distribution of Calvatia rugosa, Cyathus limbatus, Cyathus poeppigii and Podaxis pistillaris is extended for Paraguay. Descriptions and photographs of the fresh specimens are included along with comments on their taxonomy and ecology.
阿根廷Clathrus argentinus是1985年在阿根廷中北部发现的一个新种。35年后,我们报道了巴拉圭的阿根廷锥虫。除了这一有趣的发现外,我国还报道了另外8种小行星真菌的新记录:Blumenavia rhacodes、Calvatia cyathiformis、Cyathus earlei、Geastrum pusillipilosum、Lysurus sphaerocephalum、Myriostoma calongei、Phallus campanulatus和Tulostoma pygmaum。此外,在巴拉圭还扩大了牛膝花、边缘花、花花花和雌蕊花的分布。新标本的描述和照片,以及对其分类和生态学的评论。
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引用次数: 1
Mycobiome sequencing and analysis of the assemblages of fungi associated with leaf litter on the Fernow Experimental Forest in the Central Appalachian Mountains of West Virginia 西弗吉尼亚州中部阿巴拉契亚山脉Fernow实验森林凋落叶真菌群落测序和真菌组合分析
Q3 Environmental Science Pub Date : 2021-01-01 DOI: 10.5943/cream/11/1/24
FE Alshuwaili, RA Al Anbagi, DJ Nelsen, Tatiana A. Semenova‐Nelsen, S. Stephenson
Mycobiome sequencing and analysis of the assemblages of fungi associated with leaf litter on the Fernow Experimental Forest in the Central Appalachian Mountains of West Current Research Abstract High-throughput sequencing techniques have become widely used for identification, analyses of community composition, and functional significance of fungi in forest ecosystems. Because many fungi cannot be cultured, seldom produce visible sexual structures, and are often overlooked, the use of such techniques is especially appropriate. In the study reported herein, DNA-metabarcoding techniques were applied to samples of forest floor leaf litter collected from a temperate deciduous forest to explore the hidden diversity of fungi and to compare distinct assemblages of leaf litter-associated fungi. The samples were collected from the Fernow Experimental Forest (FEF) in the central Appalachian Mountains of eastern central West Virginia. The datasets of metataxonomic sequences were obtained from samples of leaf litter collected from 10 plots. These revealed high OTU abundance and richness estimates linked to five fungal phyla, at least 85 orders, and 24 classes in addition to numerous unidentified fungi. The majority of unknown fungi could be assigned only to the Ascomycota and Basidiomycota. Based on horizontal diversity indices, Shannon’s diversity indices, and evenness values, the highest diversity and evenness values of the assemblages investigated appeared to be most closely related to species of ascomycetes. Morphologically, the fungi contributing to species richness were microscopic species of ascomycetes and macroscopic basidiomycetes. Functionally, the deep sequencing revealed varied and overlapping functional guilds for filamentous fungi in which saprotrophs independently were dominant and contributed mostly to bifunctional and multifunctional guilds. The presented data provides an insight into the diversity of fungi morphology, taxonomically, functionally, and compositionally for the leaf litter microhabitats, setting the stage for forest management decisions and future fungal research.
摘要高通量测序技术已广泛应用于森林生态系统真菌的鉴定、群落组成分析和功能意义分析。因为许多真菌不能培养,很少产生可见的性结构,而且经常被忽视,所以使用这种技术是特别合适的。本研究利用dna元条形码技术对温带落叶林中的森林凋落叶进行分析,探索真菌的隐藏多样性,并比较凋落叶相关真菌的不同组合。这些样本是从西弗吉尼亚州中东部阿巴拉契亚山脉中部的费尔诺实验森林(FEF)收集的。从10个样地收集的凋落叶样本中获得元分类序列数据集。这些结果表明,除了许多未确定的真菌外,OTU丰度和丰富度估计与5个真菌门,至少85个目和24个纲有关。大多数未知真菌只能归属于子囊菌门和担子菌门。综合水平多样性指数、Shannon多样性指数和均匀度值,所调查组合的最高多样性和均匀度值与子囊菌种关系最为密切。在形态上,对物种丰富度有贡献的真菌是微观的子囊菌和宏观的担子菌。在功能上,深度测序显示丝状真菌的功能行会多样且重叠,其中腐生菌独立占主导地位,主要是双功能和多功能行会。这些数据揭示了凋落叶微生境真菌形态、分类、功能和组成的多样性,为森林管理决策和未来真菌研究奠定了基础。
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引用次数: 2
– Rediscovery of Scleroderma anomalosporum Baseia, B.D.B. Silva & M.P. Martín (Boletales, Basidiomycota) in the Brazilian Amazon: is the species now safe? 巴西亚马逊地区重新发现异常硬皮病Baseia, B.D.B. Silva & M.P. Martín (Boletales,担子菌科):该物种现在安全吗?
Q3 Environmental Science Pub Date : 2021-01-01 DOI: 10.5943/cream/11/1/27
Sônia M Almeida, Gcs Melanda, RJ Ferreira, Nm Assis, UM Oliveira, I. Baseia
Scleroderma in the Brazilian Amazon: is the species now safe? Current in Abstract The year 2019 was marked by several fires in the Amazon Domain. Rondônia, a northern Brazilian state, is part of the Amazon Domain and is the country’s third most deforested state. Anthropic action has been reported in several cases as the main source of biological diversity reduction. Among gasteroid fungi, Scleroderma camassuense and S. anomalosporum were thought to be extinct, since the only known locality was submerged due to the construction of the Belo Monte Hydroelectric Power Plant. The present work registers the presence of S. anomalosporum in Porto Velho in Rondônia, providing taxonomic data, photographs and discussion about the rediscovery and its unfolding.
巴西亚马逊地区的硬皮病:该物种现在安全了吗?2019年,亚马逊地区发生了几起火灾。Rondônia是巴西北部的一个州,是亚马逊领地的一部分,也是巴西森林砍伐第三严重的州。据报道,在一些情况下,人为活动是生物多样性减少的主要来源。在小行星真菌中,camassuse硬皮病和S. anomalosporum被认为已经灭绝,因为唯一已知的地方由于贝罗蒙特水电站的建设而被淹没。目前的工作记录了s.a normalosporum在Porto Velho (Rondônia)的存在,提供了分类数据、照片和关于重新发现及其展开的讨论。
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引用次数: 1
Effect of using desert weeds (Chenopodiaceae) as supplements in substrates of Pleurotus ostreatus (oyster mushroom) production 沙漠杂草在平菇生产基质中添加的效果
Q3 Environmental Science Pub Date : 2021-01-01 DOI: 10.5943/cream/11/1/14
IA Abed, Hba Hamad, MN Owaid, NT Hamdan, A. Lafi, HH Mutlaq
Effect of using desert weeds (Chenopodiaceae) as supplements in substrates of Pleurotus ostreatus (oyster mushroom) production. Current Research in Environmental & Applied Mycology of Abstract This study has been done to define the possibility of using two desert plant straws Atriplex tatarica and Caroxylon cyclophyllum for the first time as supplements with wheat straw substrate in producing mushroom ( Pleurotus osteratus ) to invest and build proper capacities for desert environments. This study included assessing the possibility of introducing 10% of these desert weeds straw as supplements in the formula of substrate to know their effects on the mycelial growth, mycelium completion period, primordial completion period, fruiting bodies number, yield and biological efficiency and protein content of P. ostreatus using three prepared spawns from barley, white corn and wheat seeds. Results showed that the produced spawn from the white corn exhibited the best results in the growth and yield of P. ostreatus compared to the spawn produced from wheat straw and barley. Also the A. tatarica straw-supplemented substrate showed a higher producing rate in fruiting bodies number, protein content, yield and biological efficiency. A. tatarica straw-supplemented substrate exhibited the shorter mycelial growth completion period (28.26 days). This substrate exhibited highest yield, and biological efficiency were 1489.2 g.kg -1 , and 40.01%, respectively. Also, results showed the best protein percent 24.14% and 24.00% when suing this substrate with barley seeds spawn during the first and second flushes, respectively. It exhibited the highest loss in the substrate weight was 44.3%. In conclusion, these results encourage the supplementation of agricultural substrates using desert weeds especially A. tatarica and apply in desert environments at the commercial level.
沙漠杂草在平菇生产基质中添加的效果。摘要本研究首次确定了利用两种沙漠植物秸秆——石竹(Atriplex tararica)和环叶卡罗ylon cyclophyllum——作为麦秸基质的补充,用于生产平菇(Pleurotus osteratus)的可能性,以投资和建立适合沙漠环境的生产能力。本研究以大麦、白玉米和小麦种子制备的3个卵为试验材料,研究了在基质配方中添加10%的沙漠杂草秸秆的可能性,以了解其对ostreatus的菌丝生长、菌丝完成期、原始完成期、子实体数量、产量和生物效率以及蛋白质含量的影响。结果表明,与麦秸和大麦产的卵相比,白玉米产的卵生长和产量最好。在子实体数量、蛋白质含量、产量和生物效率等方面,秸秆补底物均表现出较高的产量。添加秸秆的培养基菌丝生长完成期较短,为28.26 d。该底物产量最高,生物效率分别为1489.2 g.kg -1和40.01%。结果表明,在第一次冲洗和第二次冲洗大麦种子产卵时,该底物的蛋白质含量最高,分别为24.14%和24.00%。底物重量损失最大,为44.3%。综上所述,这些结果鼓励利用沙漠杂草,特别是鞑靼草补充农业基质,并在商业水平上应用于沙漠环境。
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引用次数: 2
期刊
Current Research in Environmental and Applied Mycology
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