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Small plot surveying reveals high fungal diversity in the Ecuadorian Amazon – a case study 小块地调查揭示了厄瓜多尔亚马逊地区高度的真菌多样性——一个案例研究
Q3 Environmental Science Pub Date : 2021-01-01 DOI: 10.5943/cream/11/1/2
G. Gates, P. Goyes, F. Gundogdu, J. Cruz, D. Ratkowsky
The diversity and ecology of macrofungi based on fruitbody collections in a small portion of a 25-year-old regenerating forest in tropical Ecuador was investigated over a period of 8 weeks. Maps are provided of the living trees of three 10 m x 10 m plots within the forest. All fungal fruitbodies within the plots were collected every third day, the major substrates being wood, litter and soil. There were 254 collections in total, representing 127 morphospecies of which 17 are Ascomycetes and 110 are Basidiomycetes. Wood supported the greatest number of species overall, but the mycota in the three plots of the study varied greatly, with one plot having twice as many species on litter as on wood. Using canonical analysis of principal components and permutational multivariate analysis of variance, the species assemblage in the plot with the greatest amount of standing and fallen wood was the most significantly different from the other sampling units. It is concluded that a detailed examination of even a small area can provide valuable information on the fungal diversity and assemblages of a forest. This is one of the few studies from Ecuador relating macrofungal diversity to forest structure.
在为期8周的时间内,对厄瓜多尔热带地区一个25年再生森林的一小部分进行了基于子实体收集的大型真菌的多样性和生态学调查。提供了森林内三个10米× 10米地块的活树地图。每隔3天采集样地内所有真菌子实体,主要基质为木材、凋落物和土壤。共收集254份,127种形态,其中子囊菌17种,担子菌110种。总体而言,木材支持的菌种数量最多,但研究中三个样地的菌种差异很大,其中一个样地凋落物上的菌种数量是木材上的两倍。利用典型主成分分析和多变量置换方差分析表明,直立木和倒伐木最多样地的物种组合与其他样地的差异最显著。结论是,即使对一个小区域进行详细检查也可以提供有关森林真菌多样性和组合的宝贵信息。这是厄瓜多尔为数不多的关于大型真菌多样性与森林结构的研究之一。
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引用次数: 1
Xerula radicata var. setosa var. nov. and three new records of the family Physalacriaceae, Agaricales from the Indian subcontinent 文章标题印度次大陆刺根芽孢菌及绒霉科三个新记录
Q3 Environmental Science Pub Date : 2021-01-01 DOI: 10.5943/cream/11/1/18
N. Wani, MK Saini, N. Malik
As an outcome of fungal forays, a number of collections of genera Strobilurus and Xerula were made from Kashmir, Himalaya. These collections were analyzed taxonomically as per the standard methodology. In the present paper, three species of the genus Xerula viz. X. furfuracea, X. radicata var. setosa var. nov., X. kenyae and one species of the genus Strobilurus namely S. tenacellus are discussed. Among these species, one new variety is proposed viz. Xerula radicata var. setosa var. nov. and the other three species are reported for the first time from India. Full descriptions, field photographs, microphotographs, drawings of macroscopic and microscopic features and a key to the explored taxa are provided.
作为真菌入侵的结果,在喜马拉雅地区的克什米尔地区收集了大量的球藻属和小球藻属植物。按照标准方法对这些集合进行分类分析。本文讨论了枯藓属的三个种,即furfuracea,根藓属,setosa变种,肯尼亚种和Strobilurus属的一个种,即S. tenacellus。其中,提出了1个新变种(Xerula radicata var. setosa var. nov.),其余3个为印度首次报道种。提供了完整的描述,现场照片,显微照片,宏观和微观特征的图纸和探索分类群的钥匙。
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引用次数: 1
Impact of sub-zero temperatures on the fungal community composition and diversity in short-term petroleum polluted temperate soils 低温对短期石油污染温带土壤真菌群落组成和多样性的影响
Q3 Environmental Science Pub Date : 2021-01-01 DOI: 10.5943/cream/11/1/31
C. Okonkwo, J. Li, N. Liu
Climate change is already altering the temperate ecosystems and as a result these ecosystems are now subjected to increased incidence of freezing and warming events. To understand the impact of sub-zero temperatures on the fungal communities in temperate soils, three soils namely clean natural soil (CNS), short term diesel oil polluted (SDS) and crude oil polluted (SCS) from a temperate region in Northern China were subjected to freezing and thawing temperatures ranging from –20 to 0C for 32 days. This study monitors and compares the changes in fungal community composition and diversity in clean and short-term petroleum polluted soils at specific temperature points (20, 0, –10 and –20C) during the laboratory-controlled freeze-thaw experiments. Structural analysis of the fungal community with 18S RNA gene analysis revealed that the sub-zero temperatures caused distinct shifts in the fungal phylum composition of the temperate soils during soil freezing phase and thawing phase respectively. The community in CNS was most responsive to the sub-zero temperature changes among the studied soil types. The thawing sub-zero temperatures were characterized by decreased community richness in the clean soil while the short-term polluted soils SDS and SCS increased in richness. Overall, our results established that the fungal community composition and diversity in the polluted soil types were more adaptable to the sub-zero temperature variations during soil freezing and thawing conditions when compared to those in the clean natural soil, suggesting that the native fungal communities present in the temperate soils with different contamination profiles displayed varying levels of cold survivability.
气候变化已经改变了温带生态系统,因此这些生态系统现在受到越来越多的冰冻和变暖事件的影响。为了解低温对温带土壤真菌群落的影响,以中国北方温带地区洁净自然土壤(CNS)、短期柴油污染土壤(SDS)和原油污染土壤(SCS)为研究对象,在-20 ~ 0℃冻融温度下进行了32 d的研究。本研究在实验室控制的冻融实验中,监测和比较了清洁和短期石油污染土壤在特定温度点(20、0、-10和- 20℃)下真菌群落组成和多样性的变化。利用18S RNA基因分析对温带土壤真菌群落结构进行了分析,发现低温对土壤冻结期和解冻期真菌门组成的影响明显。在研究的土壤类型中,CNS群落对零下温度变化的响应最为明显。在低温解冻过程中,清洁土壤的群落丰富度降低,而短期污染土壤SDS和SCS的群落丰富度增加。总体而言,研究结果表明,污染土壤类型的真菌群落组成和多样性比干净的自然土壤更能适应土壤冻融过程中低于零度的温度变化,这表明温带土壤中不同污染状况的本地真菌群落表现出不同程度的冷生存能力。
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引用次数: 0
Quality markers as a tool for evaluation of medicinal mushroom, cordyceps during bioprocessing and quality control 质量标记在药用蘑菇、冬虫夏草生物加工和质量控制中的应用
Q3 Environmental Science Pub Date : 2021-01-01 DOI: 10.5943/cream/11/1/11
D. Sanyal, P. Dey
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引用次数: 0
First report of myxomycetes in the karst forest of Minalungao National Park, Nueva Ecija, Philippines with updates on the limestone-inhabiting myxomycetes of the Philippines
Q3 Environmental Science Pub Date : 2021-01-01 DOI: 10.5943/cream/11/1/17
MH Pecundo
The karst forest landscape is a unique terrestrial ecosystem where myxomycetes have not been extensively studied. Herewith, we report the first formal listing and ecological assessment of myxomycetes on the limestone forest in Minalungao National Park, Nueva Ecija, Central Luzon, Philippines. The integrated field and moist chamber techniques gave a total of 318 identifiable fruiting bodies classified into 28 species and 14 genera, nine of which are recorded as rare, and five as abundant. Moist chambers with above-ground plant materials, i.e., aerial leaf litter and woody vines (78%) were more productive than the forest floor litter – twigs (72%) and ground leaf litter (63%). The species accumulation curve determined that 80% of the species were recovered from the area. We also determined the general taxonomic diversity (TDI = 2.07) and species diversity (HG = 4.86, HS = 0.91, FAI = 7.76, E = 0.37) of myxomycetes associated with the limestone forest habitat. However, among substrates, woody vines and twigs were the most “favored” substrates with the highest taxonomic and species diversity. Furthermore, Bray Curtis (BC) community analysis of myxomycete assemblages showed high similarities in species composition between similar types of microhabitats, i.e., between aerial and ground leaf litter and between woody vines and twigs. Our study provided baseline information on the composition of limestone-inhabiting myxomycetes and gives updates on the status of myxomycetes in limestone forests in the Philippines.
喀斯特森林景观是一种独特的陆地生态系统,黏菌在这里的研究还不广泛。在此,我们报告了菲律宾吕宋岛中部新埃西贾Minalungao国家公园石灰岩森林中黏菌的首次正式上市和生态评价。利用田间和湿室综合技术共鉴定出318个可识别的子实体,隶属于14属28种,其中9个属罕见,5个属丰富。有地上植物材料的潮湿室,即空中凋落叶和木本藤蔓(78%)的生产力高于森林地面凋落叶-树枝(72%)和地面凋落叶(63%)。物种积累曲线表明,80%的物种从该区域恢复。测定了灰岩林生境黏菌的总分类多样性(TDI = 2.07)和物种多样性(HG = 4.86, HS = 0.91, FAI = 7.76, E = 0.37)。而在基质中,木质藤本和小枝是最受青睐的基质,具有最高的分类和物种多样性。此外,Bray Curtis (BC)的黏菌群落分析表明,在相似类型的微生境中,即空中凋落叶与地面凋落叶之间、木本藤蔓与树枝之间,黏菌的物种组成具有高度的相似性。我们的研究提供了石灰岩黏菌组成的基线信息,并提供了菲律宾石灰岩森林中黏菌状况的最新信息。
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引用次数: 2
First report of Fusarium redolens causing root rot disease of wheat and barley in Morocco 摩洛哥引起小麦和大麦根腐病的镰刀菌首次报道
Q3 Environmental Science Pub Date : 2021-01-01 DOI: 10.5943/cream/11/1/19
S. Qostal, S. Kribel, M. Chliyeh, N. Mouden, MA El Alaoui, S. Serghat, A. Ouazzani Touhami, A. Douira
Field surveys carried out in wheat (durum and soft) and barley fields in April-May 2017 in North-West Morocco resulted in the isolation of a large number of fungal isolates from typical necrotic lesions characterizing the root rot of these cereals. Microscopic observations, based on morphological criteria linked an isolate of Fusarium oxysporum with an isolate of F. solani . Another Fusarium isolate ZF25, showed intermediate morphological characteristics between F. solani and F. oxysporum. Molecular comparisons showed the ZF25 and F. redolens to have a similarity of 99%. The sequence from this isolate was submitted to GenBank (accession number MT758201). Koch’s postulate was verified by inoculating these three isolates into varieties of wheat (hard and soft) and barley. All isolates induced necrotic lesions on the roots. Pathogen re-isolations from these lesions were positive. The percentages of the highest severity class S4 can reach 41.6% for wheat and 16.6% for barley. The percentages of incidences and indices of root rot observed in the wheat and barley plants inoculated with the three Fusarium isolates vary between 83.6 and 100% and between 58.3 and 70% respectively. These inoculation tests have shown that F. redolens has a strong pathogenicity towards wheat and barley. This species has not been reported in Morocco among the fungi associated with roots of barley and wheat and to our knowledge; this is the first report of this pathogen among the Fusarium complex responsible for root rot of these cereals.
2017年4月至5月,在摩洛哥西北部的小麦(硬粒和软粒)和大麦田进行了实地调查,结果从这些谷物的典型坏死性损伤中分离出大量真菌分离物,这些真菌是这些谷物根腐病的特征。显微观察,根据形态学标准,将一个分离的尖孢镰刀菌与一个分离的番茄镰刀菌联系起来。另一株镰刀菌ZF25表现出介于番茄镰刀菌和尖孢镰刀菌之间的形态特征。分子比较表明,ZF25与F. redolens的相似性为99%。该分离物的序列提交到GenBank(登录号MT758201)。科赫的假设通过将这三种分离株接种到各种小麦(硬的和软的)和大麦中得到证实。所有分离株都在根部引起坏死损伤。从这些病变中重新分离出的病原体呈阳性。最高严重等级S4的比例在小麦和大麦中分别达到41.6%和16.6%。接种3种镰刀菌的小麦和大麦根腐病发病率和根腐病指数分别为83.6% ~ 100%和58.3% ~ 70%。这些接种试验表明,赤霉病菌对小麦和大麦具有很强的致病性。据我们所知,在摩洛哥大麦和小麦根部相关的真菌中尚未发现该物种;这是在引起这些谷物根腐病的镰刀菌复合体中首次报道该病原体。
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引用次数: 0
Bioprospecting of non-mycorrhizal endophytic fungi associated with ferns and mosses 蕨类和苔藓类非菌根内生真菌的生物勘探
Q3 Environmental Science Pub Date : 2021-01-01 DOI: 10.5943/cream/11/1/30
AP Asiandu, A. Wahyudi, F. Ramadhan, H. Widjajanti
Endophytic fungi residing inside the host plant tissues may produce the same secondary metabolites as their host plants. They may have undergone coevolution and horizontal gene transfer with their host plants. Due to these processes, they may produce various kinds of chemical compounds that are important for new drugs. Scientists have successfully isolated endophytes from many higher plants. However, there are scarce reports on the biodiversity and potential of fungal endophytes associated with mosses and ferns. Mosses and ferns are highly diverse and found in all environments. They can also be used as traditional medicines. They produce some secondary metabolite compounds that have the potential for drug production. Thus, the lack of information on endophytic fungi associated with ferns and mosses opens up new opportunities for discovering new endophytic fungal species that have not been isolated. Also, this gap of knowledge provides an opportunity to obtain new types of chemical compounds from endophytic fungi associated with ferns and mosses that have essential potential. Therefore, we compile information on the various kinds of non-mycorrhizal endophytic fungi associated with ferns and mosses. The data used in this article are secondary and third-party data collected from some previous reports based on culture-dependent and culture-independent approaches. This review article aims to provide information about the biodiversity and bioprospecting of endophytic fungi associated with ferns and mosses in exploring and developing further research of endophytic fungi to obtain new drugs and industrial enzymes.
寄主植物组织内的内生真菌可以产生与寄主植物相同的次生代谢物。它们可能与寄主植物经历了共同进化和水平基因转移。由于这些过程,它们可能产生对新药很重要的各种化合物。科学家已经成功地从许多高等植物中分离出内生菌。然而,关于苔藓和蕨类植物真菌内生菌的生物多样性和潜力的报道很少。苔藓和蕨类植物种类繁多,在所有环境中都能找到。它们也可以作为传统药物使用。它们产生一些具有药物生产潜力的次级代谢物化合物。因此,缺乏与蕨类和苔藓相关的内生真菌的信息,为发现尚未分离的新的内生真菌物种开辟了新的机会。此外,这种知识差距提供了一个机会,从与蕨类植物和苔藓有关的内生真菌中获得具有重要潜力的新型化合物。因此,我们收集了与蕨类和苔藓有关的各种非菌根内生真菌的信息。本文中使用的数据是基于文化依赖和文化独立方法从以前的一些报告中收集的次要和第三方数据。本文综述了蕨类和苔藓类相关内生真菌的生物多样性和生物前景,以期对内生真菌进行进一步的研究和开发,以获得新的药物和工业酶。
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引用次数: 1
– Diversity of endophytic fungi associated with Dillenia indica L., an ethnomedicinal plant ——民族药材水莲内生真菌的多样性
Q3 Environmental Science Pub Date : 2021-01-01 DOI: 10.5943/cream/11/1/35
IB Prasher, V. Kumar
Endophytic fungi are an important source of novel bioactive molecules having broad applications in agriculture, pharmaceutical and medical industries. In the present study, endophytic fungi were isolated from Dillenia indica L. and characterized on the basis of morphological and molecular approaches. Twenty-five different endophytic fungi belonging to twenty genera i.e., Curvularia lunata, Cladosporium cladosporioides, Alternaria alternata, Colletotrichum gloeosporioides, Bipolaris crotonis, Fusarium oxysporum, Chaetomium globosum, Trichoderma viride, Clonostachys rosea, Diaporthe phaseolorum, Lasiodiplodia theobromae, Schizophyllum commune, Phomopsis sp., Colletotrichum gigasporum, Fomitopsis meliae, Fusarium brachygibbosum, Pseudofusicoccum adansoniae, Daldinia eschscholtzii, Nigrospora sphaerica, Xylaria longipes, Neopestalotiopsis clavispora, Alternaria tenuissima, Aspergillus fumigatus, Colletotrichum musae and Colletotrichum boninense were isolated and identified from different parts (leaves, fruits and stems) of Dillenia indica. To the best of our knowledge, Colletotrichum gigasporum is being reported for the first time from northwestern India and this is the first report on endophytic fungal diversity from Dillenia indica L.
内生真菌是新型生物活性分子的重要来源,在农业、制药和医疗等领域有着广泛的应用。本研究从籼稻(Dillenia indica L.)中分离得到内生真菌,并通过形态学和分子生物学方法对其进行了鉴定。25种不同的内生真菌,分属20属,即:弯孢菌、枝孢枝孢菌、互交菌、绿孢炭疽菌、cropolaris crotonis、尖孢镰刀菌、球毛毛菌、绿木霉、玫瑰枝孢菌、phaseolorum globosum、Lasiodiplodia theobrome、Schizophyllum commune、Phomopsis sp.、炭疽菌、melitopsis、短毛镰刀菌、adsononipseudofusic侵菌、Daldinia eschscholtzii、从籼稻不同部位(叶、果、茎)中分离鉴定出圆球黑孢菌、长木孢菌、锁孢新芽孢菌、细丝交替孢菌、烟曲霉、musae炭疽菌和boninense炭疽菌。据我们所知,这是首次在印度西北部报道的炭疽菌(Colletotrichum gigasporum),也是首次报道的印度Dillenia indica L.内生真菌多样性。
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引用次数: 1
Mycochemical screening, proximate nutritive composition and radical scavenging activity of Cyclocybe cylindracea and Pleurotus cornucopiae 白芍、白芍的真菌化学筛选、营养成分及自由基清除活性研究
Q3 Environmental Science Pub Date : 2021-01-01 DOI: 10.5943/cream/11/1/3
Hrr Landingin, B. Francisco, R. Dulay, Sp Kalaw, R. Reyes
This work evaluated the mycochemical and proximate composition analysis of the fruiting body extracts of Cyclocybe cylindracea and Pleurotus cornucopiae in order to determine its nutraceutical and pharmacological potential. Extracts of the two exotic mushroom species were obtained using ethanol. The DPPH radical scavenging activity and total phenolic content of the extract were also investigated. Both C. cylindracea and P. cornucopiae contained essential oil, triterpenes, anthraquinones, tannins, flavonoids, phenols, anthrones, fatty acids, alkaloids, steroids, sugars and coumarins. However, anthraquinones and flavonoids were not found in P. cornucopiae. In addition, C. cylindracea contains crude protein (13.5%), crude fat (1.52%), ash content (12.15%), moisture (10.68%), carbohydrates (62.15%) with 316.28 kcal energy value, and exhibits radical scavenging activity (40%) and total phenolic (41.08 mg GAE/g). On the other hand, P. cornucopiae had crude protein (11.98%), crude fat (1.32%), ash content (6.58%), moisture (9.07%), carbohydrates (71.05%) with 344 kcal energy value, and reveals radical scavenging activity (41.75% ) and total phenolic (39.63 mg GAE/g). Therefore, the two exotic species of mushrooms could be considered as healthy food source with pharmacological benefits.
本研究对圆柱菇和角菇子实体提取物进行了真菌化学和近似成分分析,以确定其营养和药理潜力。用乙醇提取了这两种外来蘑菇的提取物。并对其DPPH自由基清除能力和总酚含量进行了研究。两种植物均含有精油、三萜、蒽醌、单宁、黄酮类、酚类、蒽酮、脂肪酸、生物碱、类固醇、糖和香豆素。而黄酮类和蒽醌类化合物均未检出。此外,茶树还含有粗蛋白质(13.5%)、粗脂肪(1.52%)、灰分(12.15%)、水分(10.68%)、碳水化合物(62.15%),具有316.28千卡能值,自由基清除能力(40%)和总酚(41.08 mg GAE/g)。其中粗蛋白质(11.98%)、粗脂肪(1.32%)、灰分(6.58%)、水分(9.07%)、碳水化合物(71.05%)含量最高,具有344千卡能值,自由基清除能力为41.75%,总酚含量为39.63 mg GAE/g。因此,这两种外来蘑菇可以被认为是具有药理效益的健康食品来源。
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引用次数: 3
Phytochemical distribution, antimicrobial activity, enzyme production of phylogenetically differentiated endophytes from Solanum violaceum Ortega fruits 堇菜果实内生菌的植物化学分布、抑菌活性及产酶研究
Q3 Environmental Science Pub Date : 2021-01-01 DOI: 10.5943/cream/11/1/16
Á. Manasa, S. Moutusi, DC Mendez, P. Kiranmayee, M. Prasannakumar
The aim of the present work is to isolate, identify endophytic fungi from edible fruits and to test the efficacy on nosocomial microbes. Healthy and asymptomatic unripe and ripe fruits of Solanum violaceum were studied for the presence of endophytes. Twelve endophytic fungi were isolated and identified on the basis of Internal Transcribed Spacer sequences. Screened the fungi for presence and absence of phytochemicals and enzymes; and antimicrobial activity of endophytes was studied by testing against human nosocomial pathogens. Diversity of fungal endophytes was more in ripe fruits as evidenced by diversity indices viz ., Simpson’s diversity (0.834) and Shannon– Weiner indices (H’- 0.474). Phytochemical analysis revealed the presence of alkaloids, saponins, glycoside, gum and mucilage. Isolates produced amylases (33.33%), lipases (58.32) and asparaginase (80%) but not laccase and protease enzymes. Alternaria sp, Cladosporium tenuissimum , Mycosphaerellaceae sp., Curvularia beasleyi and Alternaria alternata showed activity against S. aureus , E. coli and K. pneumoniae . Curvularia beasleyi exhibited similar antifungal activity against C. albicans and C. tropicalis (20±2mm). Morphological changes of mycelia were noted after 96 h of treatment. To conclude, fungal endophytes might be potential agents for production of useful enzymes and to control microbes.
本工作的目的是分离、鉴定食用水果中的内生真菌,并测试其对医院微生物的功效。研究了堇菜(Solanum violaceum)健康、无症状、未成熟和成熟果实中内生菌的存在。利用内部转录间隔序列对12株内生真菌进行了分离鉴定。筛选真菌是否含有植物化学物质和酶;通过对人院内病原菌的抑菌试验,研究了内生菌的抑菌活性。Simpson’s多样性指数(0.834)和Shannon - Weiner多样性指数(H′- 0.474)表明,成熟果实中真菌内生菌多样性较高。植物化学分析显示其含有生物碱、皂苷、糖苷、树胶和粘液。分离株产生淀粉酶(33.33%)、脂肪酶(58.32%)和天冬酰胺酶(80%),但不产生漆酶和蛋白酶。对金黄色葡萄球菌、大肠杆菌和肺炎克雷伯菌均有抑制作用。毕氏曲霉对白色念珠菌和热带念珠菌的抑菌活性相近(20±2mm)。处理96 h后菌丝形态发生变化。综上所述,真菌内生菌可能是生产有用酶和控制微生物的潜在媒介。
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引用次数: 1
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Current Research in Environmental and Applied Mycology
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