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β-Amyloid peptide modulates peripheral immune responses and neuroinflammation in rats. β-淀粉样肽可调节大鼠的外周免疫反应和神经炎症。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-03-07 eCollection Date: 2024-01-01 DOI: 10.1515/bmc-2022-0042
Krishnendu Adhikary, Satyajit Mohanty, Bidyut Bandyopadhyay, Rajkumar Maiti, Koushik Bhattacharya, Prithviraj Karak

Alzheimer's disease (AD) is characterized by immune system dysregulation, impacting both central and peripheral immune responses. The study aimed to investigate the mechanism behind the neurotoxic effects of β-amyloid (Aβ) peptide in the rat brain including the study of neuroinflammation, neurodegeneration, and alterations in peripheral immune responses (PIR). The neuroinflammation brought on by Aβ1-42 and is unknown to influence PIR. Animal models were prepared, after 28 days, control, sham, and treated rats were anaesthetized and inflammatory markers of hippocampus and serum levels (reactive oxygen species, nitrite, tumor necrosis factor-α, and interleukin-1β), and some markers of PIR (splenic mononuclear cells or MNC, cytotoxicity and phagocytic index of the white blood cells leukocyte adhesion inhibition index or LAI), as well as polymorphonuclear cells of the spleen, were assessed. In addition to changes in peripheral immune responses, the present study found that AD rats had higher blood levels of inflammatory markers. Based on the study, the immune system irregularities observed in AD rats in the peripheral regions might be connected to neuroinflammation, which is facilitated by a compromised blood-brain barrier. Hence, it is viable to propose that the neuroinflammatory condition in rats with Aβ-induced AD could modify immune responses in the peripheral areas with significantly higher levels of inflammatory cytokines markers in the hippocampal tissue in Aβ-injected AD rats.

阿尔茨海默病(AD)的特征是免疫系统失调,影响中枢和外周免疫反应。这项研究旨在探讨β-淀粉样蛋白(Aβ)肽对大鼠大脑神经毒性作用的机制,包括研究神经炎症、神经变性和外周免疫反应(PIR)的改变。Aβ1-42 带来的神经炎症对 PIR 的影响尚不清楚。制备了动物模型,28 天后,对对照组、假大鼠和治疗大鼠进行麻醉,检测海马的炎症指标和血清水平(活性氧、亚硝酸盐、肿瘤坏死因子-α 和白细胞介素-1β)、还评估了 PIR 的一些指标(脾脏单核细胞或 MNC、细胞毒性和白细胞吞噬指数、白细胞粘附抑制指数或 LAI)以及脾脏的多形核细胞。除了外周免疫反应的变化外,本研究还发现,AD 大鼠血液中的炎症标志物水平较高。根据这项研究,在 AD 大鼠外周区域观察到的免疫系统异常可能与神经炎症有关,而血脑屏障受损会促进神经炎症。因此,Aβ诱导的AD大鼠的神经炎症状况可能会改变外周区域的免疫反应,而注射Aβ的AD大鼠海马组织中的炎性细胞因子标记物水平明显更高。
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引用次数: 0
Synergistic effects of essential oils and phenolic extracts on antimicrobial activities using blends of Artemisia campestris, Artemisia herba alba, and Citrus aurantium. 使用野蒿、白花蒿和枳壳的混合物,研究精油和酚类提取物对抗菌活性的协同效应。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-02-14 eCollection Date: 2024-01-01 DOI: 10.1515/bmc-2022-0040
Boualem Benamar-Aissa, Nadhir Gourine, Mohamed Ouinten, Mohamed Yousfi

This study explores the synergistic antibacterial effects of essential oils (EOs) and phenolic extracts from three plants against foodborne pathogenic bacteria. The present work aimed to investigate the synergistic effects of the binary and the ternary combinations of extracts using different blend proportions of the following plant extracts: Artemisia campestris (AC), Artemisia herba alba (AHA), and Citrus aurantium (CA). The antimicrobial activities of EOs and phenolic extracts were determined and evaluated against five strains. For the EOs, the results of the DIZ showed the existence of synergism for different combinations of binary blends, such as AC/AHA or AHA/CA against Escherichia coli, and AC/CA against Enterobacter faecalis. In addition, ternary blends of AC:AHA:CA at a ratio of 1/6:2/3:1/6 exhibited a synergy effect, as measured by the CI, against E. coli. On the other hand, for the phenolic extracts, synergistic effects were noticed for binary blends of AC/CA at different ratios against E. coli, E. faecalis, and Pseudomonas aeruginosa strains. Similarly, ternary blends of phenolic extracts presented synergy against E. coli, E. faecalis, P. aeruginosa strains, and even C. albicans. In this case, the blending ratios were crucial determining factors for maximizing the synergy effect. The study established that the proportion of a single drug could play an essential role in determining the bioefficacy of a drug combination treatment. Therefore, the results showed the importance of studying the modulation of antibacterial activities based on the proportions of extracts in the mixture and finding the range of proportions (as determined by SLMD) that have a synergistic/additive/antagonistic effect with no or low side effects, which can be used in a food preservation system.

本研究探讨了三种植物的精油(EO)和酚类提取物对食源性致病菌的协同抗菌作用。本研究旨在利用以下植物提取物的不同混合比例,研究二元和三元提取物组合的协同作用:野蒿(AC)、白蒿(AHA)和枳壳(CA)。测定并评估了环氧乙烷和酚类提取物对五种菌株的抗菌活性。就 EO 而言,DIZ 的结果显示,二元混合物的不同组合存在协同作用,如 AC/AHA 或 AHA/CA 针对大肠杆菌,AC/CA 针对粪肠杆菌。此外,AC:AHA:CA 三元混合物以 1/6:2/3:1/6 的比例对大肠杆菌具有协同增效作用(以 CI 值衡量)。另一方面,就酚类提取物而言,不同比例的 AC/CA 二元混合物对大肠杆菌、粪大肠杆菌和铜绿假单胞菌菌株具有协同作用。同样,酚类提取物的三元混合物对大肠杆菌、粪大肠杆菌、铜绿假单胞菌甚至白僵菌都有协同作用。在这种情况下,混合比例是最大化协同效应的关键决定因素。研究证实,单一药物的比例在决定药物组合治疗的生物功效方面起着至关重要的作用。因此,研究结果表明,根据提取物在混合物中的比例来研究抗菌活性的调节,并找到具有协同/添加/拮抗作用且无副作用或副作用较小的比例范围(由 SLMD 确定),从而将其用于食品保鲜系统,具有重要意义。
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引用次数: 0
Digital methylation-specific PCR: New applications for liquid biopsy. 数字甲基化特异性 PCR:液体活检的新应用
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-02-12 eCollection Date: 2024-01-01 DOI: 10.1515/bmc-2022-0041
Gabriela Casani Cardoso, Fernando Augusto de Oliveira Ganzella, Guilherme Miniskiskosky, Regiane Stafim da Cunha, Edneia Amancio de Souza Ramos

Epigenetic analysis is a fundamental part of understanding pathophysiological processes with potential applications in diagnosis, prognosis, and assessment of disease susceptibility. Epigenetic changes have been widely studied in chronic obstructive pulmonary disease (COPD), but currently, there is no molecular marker used to improve the treatment of patients. Furthermore, this progressive disease is a risk factor for the development of more severe COVID-19. Methylation-specific polymerase chain reaction (MSP-PCR) plays an important role in the analysis of DNA methylation profiles, and it is one of the most widely used techniques. In this context, the combination of MSP-PCR with emerging PCR technologies, such as digital PCR (dPCR), results in more accurate analyses of the DNA methylation profile of the genes under study. In this study, we propose the application of the MSP-dPCR technique to evaluate the methylation profile of the ADAM33 gene from saliva samples and lung tissue biopsies of patients with COPD and COVID-19. MSP-dPCR generated a measurable prediction of gene methylation rate, with the potential application of this combined technology for diagnostic and prognostic purposes. It has also proven to be a powerful tool for liquid biopsy applications.

表观遗传分析是了解病理生理过程的基础部分,在诊断、预后和疾病易感性评估方面具有潜在的应用价值。表观遗传学变化已在慢性阻塞性肺病(COPD)中得到广泛研究,但目前还没有用于改善患者治疗的分子标记物。此外,这种进行性疾病也是发展成更严重的 COVID-19 的危险因素。甲基化特异性聚合酶链反应(MSP-PCR)在 DNA 甲基化图谱分析中发挥着重要作用,也是应用最广泛的技术之一。在这种情况下,将 MSP-PCR 与数字 PCR(dPCR)等新兴 PCR 技术相结合,可以更准确地分析所研究基因的 DNA 甲基化图谱。在本研究中,我们建议应用 MSP-dPCR 技术评估 COPD 和 COVID-19 患者唾液样本和肺组织活检样本中 ADAM33 基因的甲基化情况。MSP-dPCR 对基因甲基化率进行了可测量的预测,这一组合技术有望应用于诊断和预后目的。事实证明,它也是液体活检应用的有力工具。
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引用次数: 0
Antitumor activity of 5-hydroxy-3',4',6,7-tetramethoxyflavone in glioblastoma cell lines and its antagonism with radiotherapy. 5-羟基-3',4',6,7-四甲氧基黄酮在胶质母细胞瘤细胞系中的抗肿瘤活性及其与放疗的拮抗作用。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-02-12 eCollection Date: 2024-01-01 DOI: 10.1515/bmc-2022-0039
Panagiota Papapetrou, Kyriakos Dimitriadis, Vasiliki Galani, Vasiliki Zoi, Maria Giannakopoulou, Vasiliki A Papathanasopoulou, Chrissa Sioka, Pericles Tsekeris, Athanassios P Kyritsis, Diamanto Lazari, George A Alexiou

5-Hydroxy-3',4',6,7-tetramethoxyflavone (TMF) is a plant-origin flavone known for its anti-cancer properties. In the present study, the cytotoxic effect of TMF was evaluated in the U87MG and T98G glioblastoma (GBM) cell lines. The effect of TMF on cell viability was assessed with trypan blue exclusion assay and crystal violet staining. In addition, flow cytometry was performed to examine its effect on the different phases of the cell cycle, and in vitro scratch wound assay assessed the migratory capacity of the treated cells. Furthermore, the effect of in vitro radiotherapy was also evaluated with a combination of TMF and radiation. In both cell lines, TMF treatment resulted in G0/G1 cell cycle arrest, reduced cell viability, and reduced cell migratory capacity. In contrast, there was an antagonistic property of TMF treatment with radiotherapy. These results demonstrated the antineoplastic effect of TMF in GBM cells in vitro, but the antagonistic effect with radiotherapy indicated that TMF should be further evaluated for its possible antitumor role post-radiotherapy.

5-羟基-3',4',6,7-四甲氧基黄酮(TMF)是一种植物源黄酮,具有抗癌特性。本研究评估了 TMF 在 U87MG 和 T98G 胶质母细胞瘤(GBM)细胞系中的细胞毒性作用。TMF 对细胞活力的影响通过胰蓝排除法和水晶紫染色法进行评估。此外,还进行了流式细胞术检测其对细胞周期不同阶段的影响,体外划痕伤口试验则评估了经处理细胞的迁移能力。此外,还评估了 TMF 和辐射联合使用对体外放疗的影响。在这两种细胞系中,TMF 处理导致 G0/G1 细胞周期停滞、细胞存活率降低和细胞迁移能力下降。与此相反,TMF 处理与放射治疗具有拮抗特性。这些结果表明了 TMF 在体外对 GBM 细胞的抗肿瘤作用,但与放疗的拮抗作用表明,应进一步评估 TMF 在放疗后可能发挥的抗肿瘤作用。
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引用次数: 0
Polycystic ovary syndrome and its management: In view of oxidative stress. 多囊卵巢综合征及其治疗:氧化应激。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-19 eCollection Date: 2024-01-01 DOI: 10.1515/bmc-2022-0038
Koushik Bhattacharya, Rajen Dey, Debanjana Sen, Nimisha Paul, Asim Kumar Basak, Mohuya Patra Purkait, Nandini Shukla, Gargi Ray Chaudhuri, Aniruddha Bhattacharya, Rajkumar Maiti, Krishnendu Adhikary, Prity Chatterjee, Prithviraj Karak, Alak Kumar Syamal

In the past two decades, oxidative stress (OS) has drawn a lot of interest due to the revelation that individuals with many persistent disorders including diabetes, polycystic ovarian syndrome (PCOS), cardiovascular, and other disorders often have aberrant oxidation statuses. OS has a close interplay with PCOS features such as insulin resistance, hyperandrogenism, and chronic inflammation; there is a belief that OS might contribute to the development of PCOS. PCOS is currently recognized as not only one of the most prevalent endocrine disorders but also a significant contributor to female infertility, affecting a considerable proportion of women globally. Therefore, the understanding of the relationship between OS and PCOS is crucial to the development of therapeutic and preventive strategies for PCOS. Moreover, the mechanistic study of intracellular reactive oxygen species/ reactive nitrogen species formation and its possible interaction with women's reproductive health is required, which includes complex enzymatic and non-enzymatic antioxidant systems. Apart from that, our current review includes possible regulation of the pathogenesis of OS. A change in lifestyle, including physical activity, various supplements that boost antioxidant levels, particularly vitamins, and the usage of medicinal herbs, is thought to be the best way to combat this occurrence of OS and improve the pathophysiologic conditions associated with PCOS.

在过去的二十年里,氧化应激(OS)引起了人们的广泛关注,因为人们发现,患有糖尿病、多囊卵巢综合征(PCOS)、心血管疾病和其他疾病等多种顽疾的人往往具有异常的氧化状态。OS与多囊卵巢综合征的特征(如胰岛素抵抗、高雄激素和慢性炎症)密切相关;有一种观点认为,OS可能会导致多囊卵巢综合征的发生。目前,多囊卵巢综合征不仅被认为是最普遍的内分泌疾病之一,也是导致女性不孕的重要因素,影响着全球相当一部分女性。因此,了解操作系统与多囊卵巢综合症之间的关系对于制定多囊卵巢综合症的治疗和预防策略至关重要。此外,还需要对细胞内活性氧/活性氮的形成及其可能与女性生殖健康之间的相互作用进行机理研究,其中包括复杂的酶和非酶抗氧化系统。除此之外,我们目前的研究还包括对 OS 发病机制的可能调节。改变生活方式,包括体育锻炼、各种提高抗氧化剂水平的补充剂(尤其是维生素)和使用药草,被认为是对抗 OS 发生和改善与多囊卵巢综合症相关的病理生理条件的最佳方法。
{"title":"Polycystic ovary syndrome and its management: In view of oxidative stress.","authors":"Koushik Bhattacharya, Rajen Dey, Debanjana Sen, Nimisha Paul, Asim Kumar Basak, Mohuya Patra Purkait, Nandini Shukla, Gargi Ray Chaudhuri, Aniruddha Bhattacharya, Rajkumar Maiti, Krishnendu Adhikary, Prity Chatterjee, Prithviraj Karak, Alak Kumar Syamal","doi":"10.1515/bmc-2022-0038","DOIUrl":"10.1515/bmc-2022-0038","url":null,"abstract":"<p><p>In the past two decades, oxidative stress (OS) has drawn a lot of interest due to the revelation that individuals with many persistent disorders including diabetes, polycystic ovarian syndrome (PCOS), cardiovascular, and other disorders often have aberrant oxidation statuses. OS has a close interplay with PCOS features such as insulin resistance, hyperandrogenism, and chronic inflammation; there is a belief that OS might contribute to the development of PCOS. PCOS is currently recognized as not only one of the most prevalent endocrine disorders but also a significant contributor to female infertility, affecting a considerable proportion of women globally. Therefore, the understanding of the relationship between OS and PCOS is crucial to the development of therapeutic and preventive strategies for PCOS. Moreover, the mechanistic study of intracellular reactive oxygen species/ reactive nitrogen species formation and its possible interaction with women's reproductive health is required, which includes complex enzymatic and non-enzymatic antioxidant systems. Apart from that, our current review includes possible regulation of the pathogenesis of OS. A change in lifestyle, including physical activity, various supplements that boost antioxidant levels, particularly vitamins, and the usage of medicinal herbs, is thought to be the best way to combat this occurrence of OS and improve the pathophysiologic conditions associated with PCOS.</p>","PeriodicalId":38392,"journal":{"name":"Biomolecular Concepts","volume":"15 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-01-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139503068","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
7Be and 22Na radionuclides for a new therapy for cancer. 用于癌症新疗法的 7Be 和 22Na 放射性核素。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-12-31 eCollection Date: 2023-01-01 DOI: 10.1515/bmc-2022-0028
Vladimir I Kukulin, Anton V Bibikov, Eugene V Tkalya, Matteo Ceccarelli, Igor V Bodrenko

10B isotopes have been almost exclusively used in the neutron-capture radiation therapy (NCT) of cancer for decades. We have identified two other nuclides suitable for radiotherapy, which have ca. ten times larger cross section of absorption for neutrons and emit heavy charged particles. This would provide several key advantages for potential NCT, such as the possibility to use a lower nuclide concentration in the target tissues or a lower neutron irradiation flux. By detecting the characteristic γ radiation from the spontaneous decay of the radionuclides, one can image their biodistribution. These advantages could open up new possibilities for NCT applications as a safer and more efficient cancer therapy.

数十年来,10B 同位素几乎完全用于癌症的中子俘获放射治疗(NCT)。我们已经确定了另外两种适合用于放射治疗的核素,它们对中子的吸收截面比10B大十倍左右,并能发射重带电粒子。这将为潜在的 NCT 提供几个关键优势,例如可以使用靶组织中较低的核素浓度或较低的中子辐照通量。通过检测放射性核素自发衰变产生的特征γ辐射,可以对其生物分布进行成像。这些优势为中子辐照技术作为一种更安全、更高效的癌症疗法的应用开辟了新的可能性。
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引用次数: 0
Mitigation of the hyperglycemic effect of streptozotocin-induced diabetes albino rats using biosynthesized copper oxide nanoparticles. 利用生物合成的纳米氧化铜颗粒缓解链脲佐菌素诱导的白化糖尿病大鼠的高血糖效应。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-12-31 eCollection Date: 2023-01-01 DOI: 10.1515/bmc-2022-0037
Ahmed Saber Hussein, Amr H Hashem, Salem S Salem

Diabetes mellitus is a metabolic disorder described by compromised insulin synthesis or resistance to insulin inside the human body. Diabetes is a persistent metabolic condition defined by elevated amounts of glucose in the bloodstream, resulting in a range of potential consequences. The main purpose of this study was to find out how biosynthesized copper oxide nanoparticles (CuONPs) affect the blood sugar levels of diabetic albino rats induced by streptozotocin (STZ). In the current study, CuONPs were successfully biosynthesized using Saccharomyes cervisiae using an eco-friendly method. Characterization results revealed that biosynthesized CuONPs appeared at 376 nm with a spherical shape with sizes ranging from 4 to 47.8 nm. Furthermore, results illustrated that administration of 0.5 and 5 mg/kg CuONP in diabetic rats showed a significant decrease in blood glucose levels accompanied by elevated insulin levels when compared to the diabetic control group; however, administration of 0.5 mg/kg is the best choice for diabetic management. Furthermore, it was found that the group treated with CuONPs exhibited a noteworthy elevation in the HDL-C level, along with a depletion in triglycerides, total cholesterol, LDL-C, and VLDL-cholesterol levels compared to the diabetic control group. This study found that administration of CuONPs reduced hyperglycemia and improved pancreatic function as well as dyslipidemia in diabetic rats exposed to STZ, suggesting their potential as a promising therapeutic agent for diabetes treatment.

糖尿病是一种代谢紊乱疾病,表现为人体内胰岛素合成受到影响或对胰岛素产生抵抗。糖尿病是一种持续性代谢疾病,表现为血液中葡萄糖含量升高,从而导致一系列潜在后果。本研究的主要目的是了解生物合成的氧化铜纳米粒子(CuONPs)如何影响链脲佐菌素(STZ)诱导的糖尿病白化大鼠的血糖水平。在本研究中,采用一种生态友好型方法,利用酵母菌成功地生物合成了 CuONPs。表征结果表明,生物合成的 CuONPs 在 376 纳米波长下呈球形,大小为 4 至 47.8 纳米。此外,研究结果表明,与糖尿病对照组相比,糖尿病大鼠服用 0.5 和 5 毫克/千克 CuONP 后,血糖水平显著下降,同时胰岛素水平升高;不过,服用 0.5 毫克/千克是控制糖尿病的最佳选择。此外,研究还发现,与糖尿病对照组相比,CuONPs 治疗组的高密度脂蛋白胆固醇(HDL-C)水平显著升高,甘油三酯、总胆固醇、低密度脂蛋白胆固醇(LDL-C)和低密度脂蛋白胆固醇(VLDL-胆固醇)水平降低。这项研究发现,服用 CuONPs 可降低 STZ 糖尿病大鼠的高血糖,改善胰腺功能和血脂异常,这表明 CuONPs 有可能成为一种治疗糖尿病的药物。
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引用次数: 0
Potential PDE4B inhibitors as promising candidates against SARS-CoV-2 infection. 潜在的PDE4B抑制剂是对抗严重急性呼吸系统综合征冠状病毒2型感染的有前景的候选者。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-11-01 eCollection Date: 2023-01-01 DOI: 10.1515/bmc-2022-0033
Federica Giuzio, Maria Grazia Bonomo, Alessia Catalano, Vittoria Infantino, Giovanni Salzano, Magnus Monné, Athina Geronikaki, Anthi Petrou, Stefano Aquaro, Maria Stefania Sinicropi, Carmela Saturnino

Severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) is an RNA virus belonging to the coronavirus family responsible for coronavirus disease 2019 (COVID-19). It primarily affects the pulmonary system, which is the target of chronic obstructive pulmonary disease (COPD), for which many new compounds have been developed. In this study, phosphodiesterase 4 (PDE4) inhibitors are being investigated. The inhibition of PDE4 enzyme produces anti-inflammatory and bronchodilator effects in the lung by inducing an increase in cAMP concentrations. Piclamilast and rolipram are known selective inhibitors of PDE4, which are unfortunately endowed with common side effects, such as nausea and emesis. The selective inhibition of the phosphodiesterase 4B (PDE4B) subtype may represent an intriguing technique for combating this highly contagious disease with fewer side effects. In this article, molecular docking studies for the selective inhibition of the PDE4B enzyme have been carried out on 21 in-house compounds. The compounds were docked into the pocket of the PDE4B catalytic site, and in most cases, they were almost completely superimposed onto piclamilast. Then, in order to enlarge our study, drug-likeness prediction studies were performed on the compounds under study.

严重急性呼吸综合征冠状病毒-2(SARS-CoV-2)是一种RNA病毒,属于2019冠状病毒病(新冠肺炎)的冠状病毒家族。它主要影响肺系统,而肺系统是慢性阻塞性肺病(COPD)的靶点,为此已经开发了许多新的化合物。本研究对磷酸二酯酶4(PDE4)抑制剂进行了研究。PDE4酶的抑制通过诱导cAMP浓度的增加在肺中产生抗炎和支气管扩张作用。吡拉米司和罗普仑是已知的PDE4选择性抑制剂,不幸的是,它们具有常见的副作用,如恶心和呕吐。磷酸二酯酶4B(PDE4B)亚型的选择性抑制可能代表了一种有趣的技术,用于对抗这种具有较少副作用的高度传染性疾病。在本文中,对21种内部化合物进行了选择性抑制PDE4B酶的分子对接研究。这些化合物被对接到PDE4B催化位点的口袋中,在大多数情况下,它们几乎完全叠加在吡拉米司特上。然后,为了扩大我们的研究,对所研究的化合物进行了药物相似性预测研究。
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引用次数: 0
Proteins turn "Proteans" - The over 40-year delayed paradigm shift in structural biology: From "native proteins in uniquely defined configurations" to "intrinsically disordered proteins". 蛋白质转变为“变形体”-结构生物学中超过40年的延迟范式转变:从“独特定义结构的天然蛋白质”到“内在无序的蛋白质”。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-01-01 DOI: 10.1515/bmc-2022-0030
Eugenio Frixione, Lourdes Ruiz-Zamarripa

The current millennium brought up a revolutionary paradigm shift in molecular biology: many operative proteins, rather than being quasi-rigid polypeptide chains folded into unique configurations - as believed throughout most of the past century - are now known to be intrinsically disordered, dynamic, pleomorphic, and multifunctional structures with stochastic behaviors. Yet, part of this knowledge, including suggestions about possible mechanisms and plenty of evidence for the same, became available by the 1950s and 1960s to remain then nearly forgotten for over 40 years. Here, we review the main steps toward the classic notions about protein structures, as well as the neglected precedents of present views, discuss possible explanations for such long oblivion, and offer a sketch of the current panorama in this field.

当前的千年带来了分子生物学的革命性范式转变:许多有效的蛋白质,而不是像过去一个世纪所认为的那样,是折叠成独特构型的准刚性多肽链,现在被认为是内在无序的、动态的、多形性的、具有随机行为的多功能结构。然而,这些知识的一部分,包括关于可能机制的建议和大量证据,在20世纪50年代和60年代才得以获得,然后在40多年的时间里几乎被遗忘。在这里,我们回顾了关于蛋白质结构的经典概念的主要步骤,以及目前观点中被忽视的先例,讨论了对这种长期遗忘的可能解释,并提供了该领域当前全景的草图。
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引用次数: 0
Modeling of olfactory transduction in AWCON neuron via coupled electrical-calcium dynamics. 基于电-钙耦合动力学的AWCON神经元嗅觉转导模型。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-01-01 DOI: 10.1515/bmc-2022-0035
Martina Nicoletti, Nicole Luchetti, Letizia Chiodo, Alessandro Loppini, Viola Folli, Giancarlo Ruocco, Simonetta Filippi

Amphid wing "C" (AWC) neurons are among the most important and studied neurons of the nematode Caenorhabditis elegans. In this work, we unify the existing electrical and intracellular calcium dynamics descriptions to obtain a biophysically accurate model of olfactory transduction in AWCON neurons. We study the membrane voltage and the intracellular calcium dynamics at different exposure times and odorant concentrations to grasp a complete picture of AWCON functioning. Moreover, we investigate the complex cascade of biochemical processes that allow AWC activation upon odor removal. We analyze the behavior of the different components of the models and, by suppressing them selectively, we extrapolate their contribution to the overall neuron response and study the resilience of the dynamical system. Our results are all in agreement with the available experimental data. Therefore, we provide an accurate mathematical and biophysical model for studying olfactory signal processing in C. elegans.

双翅“C”(AWC)神经元是秀丽隐杆线虫(Caenorhabditis elegans)中最重要且被研究的神经元之一。在这项工作中,我们统一了现有的电和细胞内钙动力学描述,以获得AWCON神经元嗅觉转导的生物物理精确模型。我们研究了不同暴露时间和气味浓度下的膜电压和细胞内钙动力学,以掌握AWCON功能的完整图景。此外,我们研究了复杂的级联生化过程,这些过程允许AWC在去除气味时激活。我们分析了模型的不同组成部分的行为,并通过选择性地抑制它们,我们推断它们对整体神经元反应的贡献,并研究了动力系统的弹性。我们的结果与现有的实验数据完全一致。因此,我们为秀丽隐杆线虫嗅觉信号处理的研究提供了一个精确的数学和生物物理模型。
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引用次数: 0
期刊
Biomolecular Concepts
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