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CEACAMS 1, 5, and 6 in disease and cancer: interactions with pathogens. 疾病和癌症中的CEACAMS 1、5和6:与病原体的相互作用。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-01-01 DOI: 10.18632/genesandcancer.230
Jerin Thomas, Addison Klebanov, Sahara John, Larry S Miller, Anil Vegesna, Richard L Amdur, Krishanu Bhowmick, Lopa Mishra

The CEA family comprises 18 genes and 11 pseudogenes located at chromosome 19q13.2 and is divided into two main groups: cell surface anchored CEA-related cell adhesion molecules (CEACAMs) and the secreted pregnancy-specific glycoproteins (PSGs). CEACAMs are highly glycosylated cell surface anchored, intracellular, and intercellular signaling molecules with diverse functions, from cell differentiation and transformation to modulating immune responses associated with infection, inflammation, and cancer. In this review, we explore current knowledge surrounding CEACAM1, CEACAM5, and CEACAM6, highlight their pathological significance in the areas of cancer biology, immunology, and inflammatory disease, and describe the utility of murine models in exploring questions related to these proteins.

CEA家族包括18个基因和11个假基因,位于染色体19q13.2上,分为两大类:细胞表面锚定CEA相关细胞粘附分子(CEACAMs)和分泌妊娠特异性糖蛋白(psg)。ceacam是高度糖基化的细胞表面锚定、细胞内和细胞间信号分子,具有多种功能,从细胞分化和转化到调节与感染、炎症和癌症相关的免疫反应。在这篇综述中,我们探索了目前关于CEACAM1、CEACAM5和CEACAM6的知识,强调了它们在癌症生物学、免疫学和炎症疾病领域的病理意义,并描述了小鼠模型在探索这些蛋白质相关问题中的效用。
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引用次数: 1
A novel t (5; 17) (q35; q21) associated with t (8; 21) (q22; q22) in a patient with acute myeloid leukemia: case report and review of literature. 小说(5;17) (q35;Q21)与t (8;21)(如;Q22)急性髓性白血病1例:病例报告及文献复习。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-01-01 DOI: 10.18632/genesandcancer.232
Kmira Zahra, Wided Cherif, Gereisha Ahmed, Haifa Regaieg, Ben Sayed Nesrine, Monia Zaier, Wided Mootamri, Yosra Ben Youssef, Nejia Brahem, Halima Sennana, Abderrahim Khelif

The t (8; 21) (q22; q22) with the resulting RUNX1- RUNX1T1 rearrangement is one of the most common cytogenetic abnormalities in acute myeloid leukemia (AML). It is associated with favorable prognosis. The t (5; 17) (q35; q21) is an uncommon translocation, fuses the gene for the nucleophosmin (NPM) to the retinoic acid receptor α(RARA) and was described essentially in acute promyelocytic leukemia (APL) variant. We present the case of a 19-year-old male patient who developed an AML with t (8; 21) (q22; q22) associated to t (5; 17) (q35; 21). Morphology and immunophenotype of the leukemic cells were compatible with AML. The patient received chemotherapy based on cytarabine and anthracycline without all-trans retinoic acid (ATRA) followed by allogenic stem cell transplantation in first remission. To the best of our knowledge, this is the first report of an association between a rare translocation t (5; 17) and t (8; 21) in AML. In this report, we will discuss the prognosis of this association as well as the treatment.

t (8;21)(如;q22)导致RUNX1- RUNX1T1重排是急性髓性白血病(AML)中最常见的细胞遗传学异常之一。它与良好的预后有关。t (5;17) (q35;q21)是一种罕见的易位,将核磷蛋白(NPM)基因融合到视黄酸受体α(RARA)上,主要发生在急性早幼粒细胞白血病(APL)变体中。我们提出一个19岁的男性患者谁发展AML与t (8;21)(如;Q22)与t (5;17) (q35;21)。白血病细胞的形态和免疫表型与AML一致。患者在首次缓解时接受基于阿糖胞苷和蒽环类药物的化疗,不使用全反式维甲酸(ATRA),随后进行同种异体干细胞移植。据我们所知,这是首次报道罕见的易位t (5;17)和t (8);21) AML。在这篇报道中,我们将讨论这种关联的预后以及治疗。
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引用次数: 0
Systems biology network reveals the correlation between COX-2 expression and Ch 7q copy number alterations in Ch 11q-deleted pediatric neuroblastoma tumors. 系统生物学网络揭示了ch11q缺失儿童神经母细胞瘤肿瘤中COX-2表达与ch7q拷贝数改变之间的相关性。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-12-02 eCollection Date: 2022-01-01 DOI: 10.18632/genesandcancer.225
Thatyanne Gradowski Farias da Costa do Nascimento, Mateus Eduardo de Oliveira Thomazini, Nilton de França Junior, Lisiane de Castro Poncio, Aline Simoneti Fonseca, Bonald Cavalcante de Figueiredo, Saulo Henrique Weber, Roberto Hirochi Herai, Lucia de Noronha, Luciane R Cavalli, Bruno César Feltes, Selene Elifio-Esposito

Tumor-associated inflammation and chromosomal aberrations can play crucial roles in cancer development and progression. In neuroblastoma (NB), the enzyme cyclooxygenase-2 (COX-2) is associated with copy number alterations on the long arm of chromosome 11 (Ch 11q), defining an aggressive disease subset. This retrospective study included formalin-fixed paraffin-embedded tumor samples collected from nine patients during diagnosis at the pediatric Pequeno Principe Hospital, Curitiba, PR, Brazil, and post-chemotherapy (CT). COX-2 expression was evaluated using immunohistochemistry and correlated with the genome profile of paired pre- and post-CT samples, determined by array comparative genomic hybridization. A systems biology approach elucidated the PTGS2 network interaction. The results showed positive correlations between pre-CT Ch 7q gain and COX-2 expression (ρ = 0.825; p-value = 0.006) and negative correlations between Ch 7q gain and Ch 11q deletion (ρ = -0.919; p-value = 0.0005). Three samples showed Ch 11q deletion and Ch 7q gain. Network analysis identified a direct connection between CAV-1 (Ch 7q) and COX-2 in NB tumors and highlighted the connection between amplified genes in Ch 7q and deleted ones in 11q. The identification of hub-bottleneck-switch genes provides new biological insights into this connection between NB, tumorigenesis, and inflammation.

肿瘤相关的炎症和染色体畸变在癌症的发生和发展中起着至关重要的作用。在神经母细胞瘤(NB)中,环氧化酶-2 (COX-2)与11号染色体长臂(ch11q)上的拷贝数改变相关,定义了一种侵袭性疾病亚群。本回顾性研究包括在巴西库里提巴Pequeno Principe儿科医院诊断期间和化疗后(CT)收集的9例患者的福尔马林固定石蜡包埋肿瘤样本。使用免疫组织化学评估COX-2的表达,并通过阵列比较基因组杂交确定配对ct前和ct后样本的基因组图谱。系统生物学方法阐明了PTGS2网络的相互作用。结果显示,ct前ch7q增益与COX-2表达呈正相关(ρ = 0.825;p值= 0.006),ch7q增益与ch11q缺失呈负相关(ρ = -0.919;p值= 0.0005)。三个样品显示ch11q缺失和ch7q增加。网络分析发现在NB肿瘤中CAV-1 (Ch 7q)和COX-2之间存在直接联系,并强调了Ch 7q中扩增的基因和11q中缺失的基因之间的联系。中枢瓶颈开关基因的鉴定为NB、肿瘤发生和炎症之间的联系提供了新的生物学见解。
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引用次数: 0
Ectopic expression of lncRNA MVIH as a potential diagnostic biomarker in cervical cancer. lncRNA MVIH异位表达作为宫颈癌潜在的诊断生物标志物。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-11-23 eCollection Date: 2022-01-01 DOI: 10.18632/genesandcancer.224
Mohammad Ghanbari, Aida Aghazadeh, Elaheh Malekabbaslou, Ali Rajabi, Aref Sobhkhizy, Melika Maydanchi, Ali Saber, Reza Safaralizadeh

Aim: Cervical cancer (CC) is one of the most common cancers in women. Recent advances in screening and vaccination against the papilloma virus (HPV) have increased protection against CC. However, there is no effective diagnostic biomarker and treatment approach during the course of the disease. The current study is thus aimed to evaluate the changes in the expression of lncRNA associated with microvascular invasion in hepatocellular carcinoma (lncRNA MVIH) and its diagnostic value as a biomarker in CC patients.

Materials and methods: One-hundred and fifteen (n = 115) pairs of CC primary tumor and marginal non-tumor tissue samples were obtained from Tabriz Valiasr International Hospital (Tabriz, Iran). RNA extraction and cDNA synthesis followed by quantitative reverse transcriptase PCR (qRT-PCR) were considered to investigate alterations in the expression levels of MVIH in patients with CC. The associations between MVIH expression changes and clinicopathological features as well as its potential as a diagnostic biomarker were assessed using SPSS and GraphPad prism software and the receiver operating characteristic (ROC).

Results: The expression levels of MVIH were significantly higher in CC tumors as compared to marginal non-tumor samples (p < 0.0001). Overexpression of MVIH was significantly associated with younger age (p = 0.033), lymph node metastasis (p = 0.031), tumor invasion depth (p = 0.035), and squamous cell type of CC (p = 0.019). The ROC analysis for MVIH as a diagnostic biomarker revealed the respective sensitivity and specificity of 67.83 and 80.

Conclusions: Overexpression of MVIH in CC tumors suggests its oncogenic role during tumorigenesis. Thus, it may serve as a potential diagnostic biomarker.

目的:宫颈癌(CC)是女性最常见的癌症之一。最近在筛查和接种乳头状瘤病毒(HPV)疫苗方面的进展增加了对CC的保护,然而,在疾病过程中没有有效的诊断生物标志物和治疗方法。因此,本研究旨在评估与肝细胞癌微血管侵袭相关的lncRNA表达变化(lncRNA MVIH)及其作为CC患者生物标志物的诊断价值。材料和方法:115对CC原发肿瘤和边缘非肿瘤组织样本来自伊朗大不里士Valiasr国际医院(Tabriz, Iran)。采用RNA提取、cDNA合成和定量逆转录酶PCR (qRT-PCR)研究MVIH在CC患者中的表达变化,并利用SPSS、GraphPad prism软件和受试者工作特征(ROC)评估MVIH表达变化与临床病理特征的关系及其作为诊断性生物标志物的潜力。结果:MVIH在CC肿瘤中的表达水平明显高于边缘非肿瘤样本(p < 0.0001)。MVIH过表达与年龄小(p = 0.033)、淋巴结转移(p = 0.031)、肿瘤浸润深度(p = 0.035)、CC鳞状细胞类型(p = 0.019)相关。ROC分析显示MVIH作为诊断性生物标志物的敏感性和特异性分别为67.83和80。结论:MVIH在CC肿瘤中的过表达提示其在肿瘤发生过程中起致瘤作用。因此,它可能作为一种潜在的诊断性生物标志物。
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引用次数: 1
Reaching beyond family history as inclusion criteria for pancreatic cancer surveillance in high-risk populations. 超越家族史作为高危人群胰腺癌监测的纳入标准。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-08-29 eCollection Date: 2022-01-01 DOI: 10.18632/genesandcancer.223
Louise Wang, Susan M Domchek, Michael L Kochman, Bryson W Katona
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引用次数: 0
Splice modulating oligomers as cancer therapeutics. 剪接调节寡聚物作为癌症治疗药物。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-08-26 eCollection Date: 2022-01-01 DOI: 10.18632/genesandcancer.222
KuanHui E Chen, Ameae M Walker
Genes are transcribed to produce pre-mRNAs, which are then spliced to create the mature mRNAs translated into protein. In recent years, improved deep sequencing technologies have shown greater than 90% of human pre-mRNAs undergo alternative splicing, thereby amplifying the potential protein products from each gene [1]. Alternatively spliced forms of pre-mRNA may code for proteins with related, distinct, or even opposing functions [1]. Many growth factor and hormone receptors and signaling molecules implicated in cancer have natural splice variants, some of which have been shown to act as dominant negatives. We hypothesized that by altering splicing to decrease growth-promoting and/or increase expression of dominant negative varieties we could eliminate abnormal dependence on growth factors, decrease metastatic potential, and promote cancer cell death. By binding to specific intronic or exonic regions or intron-exon junctions, splice modulating oligomers, which are cDNA sequences, can alter the outcome of splicing [e.g., 2, 3]. To our knowledge, no one had previously tapped the potential of splice modulating oligomers to increase the relative activity of natural dominant negatives in order to combat disease. Where splice modulating oligomers had begun to be explored as therapeutics was for diseases that result from splicing errors and the production of a non-functional protein [4, 5]. Dominant negative receptors may inhibit signaling from the growth-promoting form of the receptor in a variety of ways. In the simplest situation, a dominant negative receptor binds ligand and therefore reduces availability to the growth-promoting receptor. In other instances, the dominant negative receptor may generate an alternate intracellular signal [e.g., 6–9]. Such amplification of the effect of dominant negative receptors through a signaling cascade makes an increase in their relative expression all the more effective. Importantly and additionally, the signals generated can promote differentiation and/or apoptotic cell death [6–8], thereby Editorial
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引用次数: 0
Using quantitative immunohistochemistry in patients at high risk for hepatocellular cancer. 定量免疫组织化学在肝细胞癌高危患者中的应用
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-06-06 eCollection Date: 2022-01-01 DOI: 10.18632/genesandcancer.220
Sobia Zaidi, Richard Amdur, Xiyan Xiang, Herbert Yu, Linda L Wong, Shuyun Rao, Aiwu R He, Karan Amin, Daewa Zaheer, Raj K Narayan, Sanjaya K Satapathy, Patricia S Latham, Kirti Shetty, Chandan Guha, Nancy R Gough, Lopa Mishra

Hepatocellular carcinoma (HCC) is the primary form of liver cancer and a major cause of cancer death worldwide. Early detection is key to effective treatment. Yet, early diagnosis is challenging, especially in patients with cirrhosis, who are at high risk of developing HCC. Dysfunction or loss of function of the transforming growth factor β (TGF-β) pathway is associated with HCC. Here, using quantitative immunohistochemistry analysis of samples from a multi-institutional repository, we evaluated if differences in TGF-β receptor abundance were present in tissue from patients with only cirrhosis compared with those with HCC in the context of cirrhosis. We determined that TGFBR2, not TGFBR1, was significantly reduced in HCC tissue compared with cirrhotic tissue. We developed an artificial intelligence (AI)-based process that correctly identified cirrhotic and HCC tissue and confirmed the significant reduction in TGFBR2 in HCC tissue compared with cirrhotic tissue. Thus, we propose that a reduction in TGFBR2 abundance represents a useful biomarker for detecting HCC in the context of cirrhosis and that incorporating this biomarker into an AI-based automated imaging pipeline could reduce variability in diagnosing HCC from biopsy tissue.

肝细胞癌(HCC)是癌症的主要形式,也是全球癌症死亡的主要原因。早期发现是有效治疗的关键。然而,早期诊断是具有挑战性的,尤其是在肝硬化患者中,他们发展为HCC的风险很高。转化生长因子β(TGF-β)通路的功能障碍或功能丧失与HCC有关。在这里,使用来自多机构储存库的样本的定量免疫组织化学分析,我们评估了在肝硬化背景下,与HCC患者相比,仅肝硬化患者的组织中TGF-β受体丰度是否存在差异。我们确定,与肝硬化组织相比,HCC组织中的TGFBR2(而非TGFBR1)显著减少。我们开发了一种基于人工智能(AI)的过程,该过程正确识别了肝硬化和HCC组织,并证实了与肝硬化组织相比,HCC组织中TGFBR2的显著降低。因此,我们提出,TGFBR2丰度的降低代表了在肝硬化背景下检测HCC的有用生物标志物,并且将该生物标志物结合到基于AI的自动成像管道中可以减少从活检组织诊断HCC的可变性。
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引用次数: 0
Expression of HOTAIR and MEG3 are negatively associated with H. pylori positive status in gastric cancer patients. HOTAIR和MEG3的表达与胃癌患者幽门螺杆菌阳性呈负相关。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-02-10 eCollection Date: 2022-01-01 DOI: 10.18632/genesandcancer.219
Farnaz Amini, Mohammad Khalaj-Kondori, Amin Moqadami, Ali Rajabi

Background: Chronic infection with Helicobacter pylori is one of the main causes of gastric cancer (GC). Besides, lncRNAs play crucial roles in cancer pathobiology including GC. Here we aimed to investigate the expression of MEG3 and HOTAIR in gastric cancer tissues and evaluate their association with the H. pylori status.

Materials and methods: One hundred samples were obtained. Total RNA was extracted, cDNA was synthesized and expression of MEG3 and HOTAIR was assessed using qRT-PCR. Association of their expression with H. pylori status and other clinicopathological characteristics were investigated. Furthermore, sensitivity and specificity of the MEG3 and HOTAIR expression levels for discrimination of the tumor and non-tumor samples were evaluated by Receiver operating characteristic (ROC) curve analysis.

Results: We observed upregulation of HOTAIR but downregulation of MEG3 in tumor compared to the non-tumor tissues. We also found a significant negative association between their expression levels and H. pylori positive status. However, only the expression level of HOTAIR was significantly associated with the size and stage of the tumor (P < 0.05). The ROC curve analysis revealed that the expression levels of MEG3 and HOTAIR might discriminate GC tumor and non-tumor tissues.

Conclusions: In conclusion, this study revealed a negative association between H. pylori infection and expression of MEG3 and HOTAIR. The results suggested that the expression level of these lncRNAs might be considered as potential biomarkers for GC.

背景:慢性幽门螺杆菌感染是胃癌(GC)的主要病因之一。此外,lncrna在包括胃癌在内的癌症病理生物学中发挥着重要作用。本研究旨在研究MEG3和HOTAIR在胃癌组织中的表达,并评估其与幽门螺杆菌状态的关系。材料与方法:样品100份。提取总RNA,合成cDNA,采用qRT-PCR检测MEG3和HOTAIR的表达。研究了它们的表达与幽门螺杆菌状态和其他临床病理特征的关系。此外,通过受试者工作特征(Receiver operating characteristic, ROC)曲线分析,评价MEG3和HOTAIR表达水平对肿瘤和非肿瘤样本区分的敏感性和特异性。结果:与非肿瘤组织相比,我们观察到肿瘤组织中HOTAIR表达上调,MEG3表达下调。我们还发现它们的表达水平与幽门螺杆菌阳性状态之间存在显著的负相关。而只有HOTAIR的表达水平与肿瘤的大小、分期有显著相关性(P < 0.05)。ROC曲线分析显示MEG3和HOTAIR的表达水平可以区分胃癌组织和非肿瘤组织。结论:本研究提示幽门螺杆菌感染与MEG3和HOTAIR的表达呈负相关。结果提示,这些lncrna的表达水平可能被认为是GC的潜在生物标志物。
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引用次数: 4
CDK4: a master regulator of the cell cycle and its role in cancer. CDK4:细胞周期的主要调节因子及其在癌症中的作用。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-01-01 DOI: 10.18632/genesandcancer.221
Stacey J Baker, Poulikos I Poulikakos, Hanna Y Irie, Samir Parekh, E Premkumar Reddy

The cell cycle is regulated in part by cyclins and their associated serine/threonine cyclin-dependent kinases, or CDKs. CDK4, in conjunction with the D-type cyclins, mediates progression through the G1 phase when the cell prepares to initiate DNA synthesis. Although Cdk4-null mutant mice are viable and cell proliferation is not significantly affected in vitro due to compensatory roles played by other CDKs, this gene plays a key role in mammalian development and cancer. This review discusses the role that CDK4 plays in cell cycle control, normal development and tumorigenesis as well as the current status and utility of approved small molecule CDK4/6 inhibitors that are currently being used as cancer therapeutics.

细胞周期部分由细胞周期蛋白及其相关的丝氨酸/苏氨酸细胞周期蛋白依赖性激酶(CDKs)调控。当细胞准备开始DNA合成时,CDK4与d型细胞周期蛋白一起介导G1期的进程。尽管cdk4缺失突变小鼠是存活的,并且由于其他cdk的代偿作用,细胞增殖在体外没有明显影响,但该基因在哺乳动物发育和癌症中起着关键作用。这篇综述讨论了CDK4在细胞周期控制、正常发育和肿瘤发生中的作用,以及目前批准的小分子CDK4/6抑制剂的现状和用途,这些抑制剂目前被用作癌症治疗药物。
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引用次数: 7
Slit2 signaling stimulates Ewing sarcoma growth. Slit2信号刺激尤文氏肉瘤生长。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-01-01 DOI: 10.18632/genesandcancer.227
Kruthi Suvarna, Panneerselvam Jayabal, Xiuye Ma, Yuzuru Shiio

Ewing sarcoma is a cancer of bone and soft tissue in children driven by EWS::ETS fusion, most commonly EWS::FLI1. Because current cytotoxic chemotherapies are not improving the survival of those with metastatic or recurrent Ewing sarcoma cases, there is a need for novel and more effective targeted therapies. While EWS::FLI1 is the major driver of Ewing sarcoma, EWS::FLI1 has been difficult to target. A promising alternative approach is to identify and target the molecular vulnerabilities created by EWS::FLI1. Here we report that EWS::FLI1 induces the expression of Slit2, the ligand of Roundabout (Robo) receptors implicated in axon guidance and multiple other developmental processes. EWS::FLI1 binds to the Slit2 gene promoter and stimulates the expression of Slit2. Slit2 inactivates cdc42 and stabilizes the BAF chromatin remodeling complexes, enhancing EWS::FLI1 transcriptional output. Silencing of Slit2 strongly inhibited anchorage-dependent and anchorage-independent growth of Ewing sarcoma cells. Silencing of Slit2 receptors, Robo1 and Robo2, inhibited Ewing sarcoma growth as well. These results uncover a new role for Slit2 signaling in stimulating Ewing sarcoma growth and suggest that this pathway can be targeted therapeutically.

Ewing肉瘤是由EWS::ETS融合引起的儿童骨和软组织癌,最常见的是EWS::FLI1。由于目前的细胞毒性化疗不能提高转移性或复发性尤文氏肉瘤患者的生存率,因此需要新的更有效的靶向治疗。虽然EWS::FLI1是Ewing肉瘤的主要驱动因子,但EWS::FLI1一直难以靶向。一种有希望的替代方法是识别和靶向EWS::FLI1产生的分子脆弱性。在这里,我们报道了EWS::FLI1诱导Slit2的表达,Slit2是参与轴突引导和多种其他发育过程的Roundabout (Robo)受体的配体。EWS::FLI1结合Slit2基因启动子,刺激Slit2的表达。Slit2失活cdc42并稳定BAF染色质重塑复合物,增强EWS::FLI1转录输出。沉默Slit2强烈抑制锚定依赖性和非锚定依赖性Ewing肉瘤细胞的生长。沉默Slit2受体Robo1和Robo2也能抑制Ewing肉瘤的生长。这些结果揭示了Slit2信号在刺激Ewing肉瘤生长中的新作用,并表明该途径可以靶向治疗。
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引用次数: 2
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