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A novel 40kDa N-terminal truncated carboxypeptidase E splice variant: cloning, cDNA sequence analysis and role in regulation of metastatic genes in human cancers 一个新的40kDa n端截断羧基肽酶E剪接变异:克隆、cDNA序列分析及其在人类癌症转移基因调控中的作用
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2019-01-01 DOI: 10.18632/genesandcancer.193
Xuyu Yang, H. Lou, Ya-Ting Chen, Shui-Feng Huang, Y. Loh
Carboxypeptidase E (CPE), a prohormone processing enzyme, is a 476- amino acid protein with a signal peptide in its N-terminus and is expressed in the nervous and the endocrine systems. Recent evidence indicate CPE plays various non-enzymatic roles in the endocrine and nervous systems and in various cancers. Besides wild type (WT) CPE, a 40-kDa CPE protein that localizes in the nucleus and cytoplasm has been described in embryonic mouse brain. In this study we have cloned this CPE variant encoding the 40kDa CPE-ΔN protein from human cancer cells. RACE assay and sequence analysis confirmed existence of this CPE variant mRNA, which has 198 nucleotides removed within the first exon and 589 nucleotides from the 3’-UTR, respectively, compared to WT-CPE mRNA. Bioinformatic analysis revealed that this CPE variant mRNA has a shortened open reading frame, which starts coding from the 3rd ATG relative to WT-CPE mRNA and encodes a 40kDa N-terminus truncated CPE protein. RT-PCR and Western blot analysis showed that 40kDa CPE-ΔN is expressed in multiple cancer cell lines and tumor tissues. Overexpression of this 40kDa CPE-ΔN variant up-regulated expression of multiple metastatic genes encompassing different signaling pathways, suggesting potentially an important role of CPE-ΔN in tumor metastasis.
羧基肽酶E (Carboxypeptidase E, CPE)是一种含有476个氨基酸的蛋白,其n端含有一个信号肽,在神经系统和内分泌系统中表达。最近的证据表明,CPE在内分泌和神经系统以及各种癌症中发挥多种非酶作用。除了野生型(WT) CPE外,在胚胎小鼠脑中还发现了一种定位于细胞核和细胞质中的40 kda CPE蛋白。在这项研究中,我们从人类癌细胞中克隆了编码40kDa CPE-ΔN蛋白的CPE变体。RACE实验和序列分析证实了该CPE变异mRNA的存在,与WT-CPE mRNA相比,该变异mRNA在第一个外显子内和3 ' -UTR中分别有198个核苷酸和589个核苷酸被删除。生物信息学分析表明,该CPE变异mRNA具有较短的开放阅读框,相对于WT-CPE mRNA从第3 ATG开始编码,编码40kDa的n端截断CPE蛋白。RT-PCR和Western blot分析显示,40kDa CPE-ΔN在多种癌细胞系和肿瘤组织中均有表达。这种40kDa CPE-ΔN变体的过表达上调了包含不同信号通路的多个转移基因的表达,表明CPE-ΔN在肿瘤转移中可能发挥重要作用。
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引用次数: 7
Increased Smad3 and reduced Smad2 levels mediate the functional switch of TGF-β from growth suppressor to growth and metastasis promoter through TMEPAI/PMEPA1 in triple negative breast cancer. 在三阴性乳腺癌中,Smad3水平升高和Smad2水平降低介导TGF-β通过TMEPAI/PMEPA1从生长抑制因子向生长和转移促进因子的功能转换。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2019-01-01 DOI: 10.18632/genesandcancer.194
Prajjal K Singha, Srilakshmi Pandeswara, Hui Geng, Rongpei Lan, Manjeri A Venkatachalam, Albert Dobi, Shiv Srivastava, Pothana Saikumar

Screening of several TNBC cell lines showed altered Smad2 and Smad3 protein levels compared to normal mammary epithelial cells, suggesting the possibility that it could play an important role in the escape of cancer cells from TGF-β mediated growth inhibition. To assess the functional relevance of these endogenous molecules, Smad2 or Smad3 expression was knocked down individually and assessed their effects on pro-oncogenic properties of TGF-β. Smad3 deficiency reduced growth and invasion capacity of breast cancer cells in comparison to Smad2 which had no effect. Smad3 deficiency was also found to be associated with a reduction in the expressions of TMEPAI/PMEPA1 and EMT inducing transcription factors, E-Cadherin and increased expression of cell cycle inhibitors and Vimentin. On the other hand, Smad2 deficiency had opposite effect on these regulators. Interestingly, the decreased growth, invasion and associated gene expressions were largely reversed by overexpressing TMEPAI in Smad3 knockdown cells, suggesting that Smad3-TMEPAI axis may be involved in subverting growth suppressive effects of TGF-β into growth promotion. Similarly, altered levels of Smad proteins and TMEPAI were also noted in primary TNBC tumor tissues. Analysis of the existing databases provided additional support in terms of TMEPAI and Smad2 expression impacting the survival of TNBC patients. Taken together, our data demonstrate a novel role for Smad3 in cancer transformation and cancer progression through TMEPAI and further suggest that selective targeting of TGF-β-Smad3-TMEPAI axis may be beneficial in triple negative breast cancer therapy and prevention.

对几种TNBC细胞系的筛选显示,与正常乳腺上皮细胞相比,Smad2和Smad3蛋白水平发生了改变,这表明Smad3可能在癌细胞逃避TGF-β介导的生长抑制中发挥了重要作用。为了评估这些内源性分子的功能相关性,我们分别下调Smad2或Smad3的表达,并评估它们对TGF-β促癌特性的影响。与没有影响的Smad2相比,Smad3缺乏降低了乳腺癌细胞的生长和侵袭能力。Smad3缺陷还被发现与TMEPAI/PMEPA1和EMT诱导转录因子E-Cadherin的表达减少以及细胞周期抑制剂和Vimentin的表达增加有关。另一方面,Smad2缺乏对这些调节因子有相反的影响。有趣的是,在Smad3敲除细胞中,TMEPAI的过表达在很大程度上逆转了生长、侵袭和相关基因表达的下降,这表明Smad3-TMEPAI轴可能参与了将TGF-β的生长抑制作用颠覆为促进生长的过程。同样,在原发性TNBC肿瘤组织中也发现了Smad蛋白和TMEPAI水平的改变。对现有数据库的分析提供了关于TMEPAI和Smad2表达影响TNBC患者生存的额外支持。综上所述,我们的数据证明了Smad3通过TMEPAI在癌症转化和癌症进展中的新作用,并进一步表明选择性靶向TGF-β-Smad3-TMEPAI轴可能有助于三阴性乳腺癌的治疗和预防。
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引用次数: 22
John Mendelsohn: A visionary scientist, oncologist and leader 约翰·门德尔松:一位有远见的科学家、肿瘤学家和领导者
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2019-01-01 DOI: 10.18632/genesandcancer.195
Rakesh Kumar, F. Murad, O. Bogler, B. O’Malley, G. Hortobagyi
Dr. John Mendelsohn is credited for the concept of targeting the epidermal growth factor receptor (EGFR), providing the first evidence of anticancer activity of antagonist anti-EGFR mAb, and developing the Erbitux (Cetuximab) drug for cancer patients. During his professional journey, Dr. Mendelsohn also helped to build and elevate the status of three cancer cancers, all while touching the lives of cancer patients around the globe. He was a towering figure, and his passing in January 2019 casts a very long shadow over the entire field of cancer research and treatment. Although no one person can ever adequately fill John Mendelsohn's very large shoes, we can all learn by his remarkable example. Here we discuss Dr. Mendelsohn's professional life to spotlight his influence on oncology and also share personal reflections from us and several colleagues: Tony Hunter, Robert A. Weinberg, Robert C. Bast, Raymond Sawaya, David M. Gershenson, Christopher J Logothetis, Stanley R. Hamilton, Mien-Chie Hung, and George M. Stancel. See related article Kumar et al. Can Res 2019; 79:4315-4323.
John Mendelsohn博士被认为是针对表皮生长因子受体(EGFR)的概念,提供了拮抗剂抗EGFR mAb抗癌活性的第一个证据,并为癌症患者开发了Erbitux(西妥昔单抗)药物。在他的职业生涯中,门德尔松博士还帮助建立和提升了三种癌症的地位,同时触动了全球癌症患者的生活。他是一位杰出的人物,他于2019年1月去世,给整个癌症研究和治疗领域蒙上了很长的阴影。虽然没有人能完全接替约翰·门德尔松的巨大职位,但我们都可以从他的杰出榜样中学习。在这里,我们将讨论门德尔松博士的职业生涯,以突出他对肿瘤学的影响,并分享我们和几位同事的个人反思:Tony Hunter, Robert A. Weinberg, Robert C. Bast, Raymond Sawaya, David M. Gershenson, Christopher J Logothetis, Stanley R. Hamilton, Mien-Chie Hung和George M. stansel。参见相关文章Kumar等人。Can Res 2019;79:4315 - 4323。
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引用次数: 3
Genomic alterations of Tenascin C in highly aggressive prostate cancer: a meta-analysis. 高度侵袭性前列腺癌中 Tenascin C 的基因组改变:一项荟萃分析。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2019-01-01 DOI: 10.18632/genesandcancer.196
Prachi Mishra, Michael A Kiebish, Jennifer Cullen, Alagarsamy Srinivasan, Aliyah Patterson, Rangaprasad Sarangarajan, Niven R Narain, Albert Dobi

Tenascin C (TNC), an extra-cellular matrix (ECM) family gene, is expressed in several cancer tissues of breast, lung, colon, and gastrointestinal tract leading to proliferation, migration, invasion, angiogenesis and metastasis, but its role in tumorigenesis of prostate cancer is poorly understood. We took a meta-analysis approach to characterize the alterations of TNC gene in prostate cancer using publicly available databases (cBioportal Version 2.2.0, http://www.cBioportal.org/index.do). The analysis identified TNC alterations (gene amplification) significantly in the neuroendocrine prostate cancer dataset (Trento/Broad/Cornell, N = 114), which was further validated in other prostate cancer datasets, including The Cancer Genome Atlas (TCGA) prostate cancer (2015). In the TCGA prostate cancer dataset (N = 498), high TNC (alteration frequency, 36%) revealed a strong association with high diagnostic Gleason score. Genomic alterations of TNC was also significantly associated (P < 0.05) with expression level of genes from NOTCH, SOX and WNT family, implicating a link between TNC and poorly differentiated aggressive phenotype in NEPC. TCGA prostate adenocarcinoma cases with TNC alteration also demonstrated prominent decrease in disease-free survival (P = 0.0637). These findings indicate a possible association of TNC to the aggressive subtype of prostate cancer and warrant further functional studies to evident the involvement of TNC in prostate cancer progression.

Tenascin C(TNC)是一种细胞外基质(ECM)家族基因,在乳腺癌、肺癌、结肠癌和胃肠道癌等多种癌症组织中均有表达,可导致增殖、迁移、侵袭、血管生成和转移,但其在前列腺癌肿瘤发生中的作用却鲜为人知。我们采用荟萃分析方法,利用公开数据库(cBioportal Version 2.2.0,http://www.cBioportal.org/index.do)描述了前列腺癌中TNC基因的改变。分析发现,神经内分泌性前列腺癌数据集(特伦托/布罗德/康奈尔,N = 114)中的TNC基因改变(基因扩增)显著,这在其他前列腺癌数据集中得到了进一步验证,包括癌症基因组图谱(TCGA)前列腺癌(2015年)。在TCGA前列腺癌数据集(N = 498)中,高TNC(改变频率,36%)与高诊断性格里森评分密切相关。TNC的基因组改变还与NOTCH、SOX和WNT家族基因的表达水平显著相关(P<0.05),这表明TNC与NEPC分化不良的侵袭性表型之间存在联系。有TNC改变的TCGA前列腺癌病例的无病生存率也明显下降(P = 0.0637)。这些研究结果表明,TNC可能与前列腺癌的侵袭性亚型有关,因此有必要进行进一步的功能研究,以证明TNC参与了前列腺癌的进展。
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引用次数: 0
How a disruption of the competition between HIF-1 and p53 for limiting p300/CBP by latent viruses can cause disease. 潜伏病毒破坏HIF-1和p53之间限制p300/CBP的竞争如何导致疾病。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2018-05-01 DOI: 10.18632/genesandcancer.178
Hanan Polansky, Hava Schwab
CBP and p300 are considered the most heavily connected coactivators in the mammalian protein-protein interaction network [1] with at least 315 different cellular and viral interacting partners [2]. CBP and p300 are histone acetyltransferases that control the transcription of numerous genes in humans, viruses, and other species. CBP/p300 is a 300 kDa protein that has a CH2 domain, which contains its acetyltransferase activity, and five binding domains [3]. Although two separate genes encode CBP and p300, they share a 61% sequence identity, and are often mentioned together as CBP/p300 [3]. Many studies showed that competition for the limiting CBP/p300 is an important mechanism used by the cell to regulate transcription and cellular behavior. This commentary discusses two of these studies [4] [5] and connects the observations reported in these studies to the Microcompetition Model. HIF-1α, a subunit of the hypoxia-inducible factor-1 (HIF-1) transcription factor, is regulated in an oxygendependent manner. Under normal oxygen conditions it is inactive and made at low levels. Under hypoxic conditions, it is stabilized and activated. The tumor suppressor p53 is another protein that is active under hypoxic conditions. Using differential equations and a dimensionless state variable, Zhou et al. [4] determined the effect of p300 on the steady-state concentrations of proteins. They discovered that under hypoxic conditions HIF-1α and tumor suppressor p53 compete for binding to the coactivator p300. They showed that the co-activator p300 is required for full transcriptional activity of both p53 and HIF-1. According to Zhou et al., this competition indicates that p300 is limiting. To investigate the cross-talk between HIF-1α and p53, Ruas et al. [5] performed ChIP analyses to examine the recruitment of CBP to HIF-1α and p53 target gene promoters under hypoxic conditions. The results of the ChIP analyses showed that under this condition the levels of CBP on target gene promoters are reduced compared to the maximum binding levels. Based on these results, Ruas et al. concluded that CBP/p300 is limiting, and that HIF-1α and p53 compete for recruitment of the limiting amounts of CBP/p300 to their target gene promoters, and that this competition affects the transcription of these genes. These studies showed that competition between the cellular transcription factors HIF-1α and p53 for binding the limiting p300 is an important regulator of transcription. According to the Microcompetition Model, a disruption of this regulation can cause many diseases. The Microcompetition Model was first described in the book ‘Microcompetition with Foreign DNA and the Origin of Chronic Disease.’ [6][7] The model centers on one type of disruption of this regulation caused by viruses that include the strong cis-regulatory element found their promoters/enhancers called the N-box. This element binds the cellular p300•GABP transcription complex during the latent phase. Some common viruses
{"title":"How a disruption of the competition between HIF-1 and p53 for limiting p300/CBP by latent viruses can cause disease.","authors":"Hanan Polansky,&nbsp;Hava Schwab","doi":"10.18632/genesandcancer.178","DOIUrl":"https://doi.org/10.18632/genesandcancer.178","url":null,"abstract":"CBP and p300 are considered the most heavily connected coactivators in the mammalian protein-protein interaction network [1] with at least 315 different cellular and viral interacting partners [2]. CBP and p300 are histone acetyltransferases that control the transcription of numerous genes in humans, viruses, and other species. CBP/p300 is a 300 kDa protein that has a CH2 domain, which contains its acetyltransferase activity, and five binding domains [3]. Although two separate genes encode CBP and p300, they share a 61% sequence identity, and are often mentioned together as CBP/p300 [3]. Many studies showed that competition for the limiting CBP/p300 is an important mechanism used by the cell to regulate transcription and cellular behavior. This commentary discusses two of these studies [4] [5] and connects the observations reported in these studies to the Microcompetition Model. HIF-1α, a subunit of the hypoxia-inducible factor-1 (HIF-1) transcription factor, is regulated in an oxygendependent manner. Under normal oxygen conditions it is inactive and made at low levels. Under hypoxic conditions, it is stabilized and activated. The tumor suppressor p53 is another protein that is active under hypoxic conditions. Using differential equations and a dimensionless state variable, Zhou et al. [4] determined the effect of p300 on the steady-state concentrations of proteins. They discovered that under hypoxic conditions HIF-1α and tumor suppressor p53 compete for binding to the coactivator p300. They showed that the co-activator p300 is required for full transcriptional activity of both p53 and HIF-1. According to Zhou et al., this competition indicates that p300 is limiting. To investigate the cross-talk between HIF-1α and p53, Ruas et al. [5] performed ChIP analyses to examine the recruitment of CBP to HIF-1α and p53 target gene promoters under hypoxic conditions. The results of the ChIP analyses showed that under this condition the levels of CBP on target gene promoters are reduced compared to the maximum binding levels. Based on these results, Ruas et al. concluded that CBP/p300 is limiting, and that HIF-1α and p53 compete for recruitment of the limiting amounts of CBP/p300 to their target gene promoters, and that this competition affects the transcription of these genes. These studies showed that competition between the cellular transcription factors HIF-1α and p53 for binding the limiting p300 is an important regulator of transcription. According to the Microcompetition Model, a disruption of this regulation can cause many diseases. The Microcompetition Model was first described in the book ‘Microcompetition with Foreign DNA and the Origin of Chronic Disease.’ [6][7] The model centers on one type of disruption of this regulation caused by viruses that include the strong cis-regulatory element found their promoters/enhancers called the N-box. This element binds the cellular p300•GABP transcription complex during the latent phase. Some common viruses ","PeriodicalId":38987,"journal":{"name":"Genes and Cancer","volume":"9 5-6","pages":"153-154"},"PeriodicalIF":0.0,"publicationDate":"2018-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6305108/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36819068","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 4
Tumor metabolism regulating chemosensitivity in ovarian cancer. 调节卵巢癌化疗敏感性的肿瘤代谢。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2018-05-01 DOI: 10.18632/genesandcancer.176
Chae Young Han, David A Patten, Richard B Richardson, Mary-Ellen Harper, Benjamin K Tsang

Elevated metabolism is a key hallmark of multiple cancers, serving to fulfill high anabolic demands. Ovarian cancer (OVCA) is the fifth leading cause of cancer deaths in women with a high mortality rate (45%). Chemoresistance is a major hurdle for OVCA treatment. Although substantial evidence suggests that metabolic reprogramming contributes to anti-apoptosis and the metastasis of multiple cancers, the link between tumor metabolism and chemoresistance in OVCA remains unknown. While clinical trials targeting metabolic reprogramming alone have been met with limited success, the synergistic effect of inhibiting tumor-specific metabolism with traditional chemotherapy warrants further examination, particularly in OVCA. This review summarizes the role of key glycolytic enzymes and other metabolic synthesis pathways in the progression of cancer and chemoresistance in OVCA. Within this context, mitochondrial dynamics (fission, fusion and cristae structure) are addressed regarding their roles in controlling metabolism and apoptosis, closely associated with chemosensitivity. The roles of multiple key oncogenes (Akt, HIF-1α) and tumor suppressors (p53, PTEN) in metabolic regulation are also described. Next, this review summarizes recent research of metabolism and future direction. Finally, we examine clinical drugs and inhibitors to target glycolytic metabolism, as well as the rationale for such strategies as potential therapeutics to overcome chemoresistant OVCA.

新陈代谢旺盛是多种癌症的一个重要特征,可满足高合成代谢需求。卵巢癌(OVCA)是女性癌症死亡的第五大原因,死亡率高达 45%。化疗抗药性是治疗卵巢癌的主要障碍。虽然有大量证据表明,代谢重编程有助于多种癌症的抗凋亡和转移,但 OVCA 中肿瘤代谢与化疗耐药性之间的联系仍然未知。虽然单独针对代谢重编程的临床试验成功率有限,但抑制肿瘤特异性代谢与传统化疗的协同作用值得进一步研究,尤其是在 OVCA 中。本综述总结了关键糖酵解酶和其他代谢合成途径在 OVCA 癌症进展和化疗耐药性中的作用。在此背景下,还探讨了线粒体动力学(裂变、融合和嵴结构)在控制新陈代谢和细胞凋亡方面的作用,这与化疗敏感性密切相关。此外,还介绍了多种关键致癌基因(Akt、HIF-1α)和肿瘤抑制因子(p53、PTEN)在新陈代谢调控中的作用。接下来,本综述总结了新陈代谢的最新研究和未来方向。最后,我们探讨了针对糖酵解代谢的临床药物和抑制剂,以及将这些策略作为克服化疗耐药 OVCA 的潜在疗法的理由。
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引用次数: 0
Neoadjuvant administration of hydroxychloroquine in a phase 1 clinical trial induced plasma Par-4 levels and apoptosis in diverse tumors. 在一项 1 期临床试验中,羟氯喹的新辅助用药可诱导血浆 Par-4 水平和多种肿瘤的细胞凋亡。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2018-05-01 DOI: 10.18632/genesandcancer.181
Peng Wang, Ravshan Burikhanov, Rani Jayswal, Heidi L Weiss, Susanne M Arnold, John L Villano, Vivek M Rangnekar

Chloroquine and hydroxychloroquine (HCQ) are robust inducers of the tumor suppressor Par-4 secretion from normal cells. Secreted Par-4 causes paracrine apoptosis of tumor cells and inhibits metastasis in mice. We report the clinical results with pharmacodynamic analyses of our Phase I trial using neoadjuvant administration of HCQ in patients with surgically removable early stage solid tumors. This was a single-institution trial of oral HCQ (200 or 400 mg twice daily) given for 14 days prior to planned surgery. Dose escalation was based on isotonic regression to model safety and biological effect based on plasma Par-4 analysis. Eight of the nine patients treated with HCQ showed elevation in plasma Par-4 levels over basal levels. No toxicities were observed with these dose regimens. The resected tumors from the eight HCQ-treated patients with elevated plasma Par-4 levels, but not the resected tumor from the patient who failed to induce plasma Par-4 levels, exhibited TUNEL-positivity indicative of apoptosis. Resected tumors from all nine HCQ-treated patients showed p62/sequestosome-1 induction indicative of autophagy-inhibition by HCQ. Our findings indicate that both dose levels of HCQ were well-tolerated and that Par-4 secretion but not induction of the autophagy-inhibition marker p62 correlated with apoptosis induction in patients' tumors.

氯喹和羟氯喹(HCQ)是正常细胞分泌肿瘤抑制因子 Par-4 的强大诱导剂。分泌的 Par-4 会导致肿瘤细胞旁分泌性凋亡,并抑制小鼠的转移。我们报告了对手术切除的早期实体瘤患者使用 HCQ 进行新辅助治疗的 I 期试验的临床结果和药效学分析。这是一项单机构试验,在计划手术前口服 HCQ(200 或 400 毫克,每日两次)14 天。剂量递增基于等渗回归,以血浆 Par-4 分析为基础建立安全性和生物效应模型。在接受 HCQ 治疗的 9 位患者中,有 8 位患者的血浆 Par-4 水平高于基础水平。这些剂量方案未发现任何毒性反应。血浆 Par-4 水平升高的 8 名接受 HCQ 治疗的患者切除的肿瘤显示出 TUNEL 阳性,而血浆 Par-4 水平未升高的患者切除的肿瘤则显示出凋亡。经 HCQ 治疗的九名患者切除的肿瘤均显示 p62/sequestosome-1诱导,表明 HCQ 抑制了自噬。我们的研究结果表明,两种剂量水平的HCQ都具有良好的耐受性,Par-4的分泌而非自噬抑制标志物p62的诱导与患者肿瘤的凋亡诱导相关。
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引用次数: 0
Pancreatic carcinoma cells colonizing the liver modulate the expression of their extracellular matrix genes. 胰腺癌细胞定殖肝脏调节其细胞外基质基因的表达。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2018-05-01 DOI: 10.18632/genesandcancer.179
Khamael M K Al-Taee, Michael Zepp, Irina Berger, Martin R Berger, Hassan Adwan

Liver is the main target of pancreatic ductal adenocarcinoma (PDAC) metastasis. Here, a rat model was used for analysing gene expression modulations during liver colonization. ASML PDAC cells were injected to isogenic rats and re-isolated at various stages of liver colonization for RNA isolation or re-cultivation. Microarrays were used for analysing mRNA and miRNA profiles of expres-sion. The results were partially confirmed by (q) RT-PCR and western blot. Selected genes were knocked down by siRNA transfection and the resulting cell behaviour was analysed. The ratio of up- and down regulated genes decreased from 20:1 (early stage) to 1.2:1 (terminal stage). Activation of cancer relevant gene categories varied between stages of liver colonization, with a nadir in the intermediate stage. The cells' environment triggered up to hundredfold changed expression for collagens, matrix metalloproteinases and chemokines. These modulations in mRNA expression were related to respective changes at miRNA levels. Gene expression knockdown of Mmp2 and Ccl20, which were highly modulated in vivo, was correlated with reduced prolif-eration and migration in vitro. Thus, target genes and temporal alterations in expression were identified, which can serve as basis for future therapeutic or diagnostic purposes.

肝脏是胰腺导管腺癌(pancreatic ductal adencarcinoma, PDAC)转移的主要靶点。本研究采用大鼠模型分析肝脏定植过程中基因表达的变化。将ASML PDAC细胞注射到等基因大鼠体内,在肝脏定殖的不同阶段重新分离,进行RNA分离或再培养。利用微阵列分析mRNA和miRNA的表达谱。(q) RT-PCR和western blot部分证实了结果。通过siRNA转染敲除选定的基因,并分析由此产生的细胞行为。上调和下调基因的比例从早期的20:1下降到终末期的1.2:1。肿瘤相关基因类别的激活在肝脏定植的不同阶段有所不同,在中间阶段达到最低点。细胞的环境导致胶原蛋白、基质金属蛋白酶和趋化因子的表达变化高达百倍。这些mRNA表达的调节与各自miRNA水平的变化有关。体内高度调控的Mmp2和Ccl20基因表达下调与体外增殖和迁移减少相关。因此,靶基因和表达的时间变化被确定,这可以作为未来治疗或诊断目的的基础。
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引用次数: 5
The promising immune checkpoint LAG-3: from tumor microenvironment to cancer immunotherapy. 有前景的免疫检查点LAG-3:从肿瘤微环境到癌症免疫治疗。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2018-05-01 DOI: 10.18632/genesandcancer.180
Long Long, Xue Zhang, Fuchun Chen, Qi Pan, Pronnaphat Phiphatwatchara, Yuyang Zeng, Honglei Chen

Cancer immunotherapy and tumor microenvironment have been at the forefront of research over the past decades. Targeting immune checkpoints especially programmed death 1 (PD-1)/programmed death ligand 1 (PD-L1) has made a breakthrough in treating advanced malignancies. However, the low response rate brings a daunting challenge, changing the focus to dig deeply into the tumor microenvironment for alternative therapeutic targets. Strikingly, the inhibitory immune checkpoint lymphocyte activation gene-3 (LAG-3) holds considerable potential. LAG-3 suppresses T cells activation and cytokines secretion, thereby ensuring immune homeostasis. It exerts differential inhibitory impacts on various types of lymphocytes and shows a remarkable synergy with PD-1 to inhibit immune responses. Targeting LAG-3 immunotherapy is moving forward in active clinical trials, and combination immunotherapy of anti-LAG-3 and anti-PD-1 has shown exciting efficacy in fighting PD-1 resistance. Herein, we shed light on the significance of LAG-3 in the tumor microenvironment, highlight its role to regulate different lymphocytes, interplay with other immune checkpoints especially PD-1, and emphasize new advances in LAG-3-targeted immunotherapy.

在过去的几十年里,肿瘤免疫治疗和肿瘤微环境一直处于研究的前沿。靶向免疫检查点特别是程序性死亡1 (PD-1)/程序性死亡配体1 (PD-L1)在治疗晚期恶性肿瘤方面取得了突破性进展。然而,低应答率带来了艰巨的挑战,改变了深入挖掘肿瘤微环境以寻找替代治疗靶点的重点。引人注目的是,抑制性免疫检查点淋巴细胞激活基因-3 (LAG-3)具有相当大的潜力。LAG-3抑制T细胞活化和细胞因子分泌,从而保证免疫稳态。它对不同类型的淋巴细胞有不同的抑制作用,并与PD-1协同抑制免疫反应。针对LAG-3的免疫治疗正在积极进行临床试验,抗LAG-3和抗PD-1联合免疫治疗在对抗PD-1耐药方面显示出令人兴奋的疗效。本文阐述了LAG-3在肿瘤微环境中的意义,强调了其在调节不同淋巴细胞、与其他免疫检查点特别是PD-1的相互作用中的作用,并强调了LAG-3靶向免疫治疗的新进展。
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引用次数: 257
Whole-transcriptome sequencing identified gene expression signatures associated with aggressive clear cell renal cell carcinoma. 全转录组测序鉴定了与侵袭性透明细胞肾细胞癌相关的基因表达特征。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2018-05-01 DOI: 10.18632/genesandcancer.183
Ken Batai, Elliot Imler, Jayce Pangilinan, Robert Bell, Aye Lwin, Elinora Price, Tijana Milinic, Amit Arora, Nathan A Ellis, Erika Bracamonte, Bruce Seligmann, Benjamin R Lee

Clear cell renal cell carcinoma (ccRCC) is the most prevalent subtype of kidney cancer, yet molecular biomarkers have not been used for the prognosis of ccRCC to aide clinical decision making. This study aimed to identify genes associated with ccRCC aggressiveness and overall survival (OS). Samples of ccRCC tumor tissue were obtained from 33 patients who underwent nephrectomy. Gene expression was determined using whole-transcriptome sequencing. The Cancer Genome Atlas Kidney Renal Clear Cell Carcinoma (TCGA-KIRC) RNA-seq data was used to test association with OS. 290 genes were differentially expressed between tumors with high and low stage, size, grade, and necrosis (SSIGN) score (≥7 vs. ≤3) with P ADJ<0.05. Four genes, G6PD, APLP1, GCNT3, and PLPP2, were also over-expressed in advanced stage (III and IV) and high grade (3 and 4) ccRCC and tumor with necrosis (P ADJ<0.05). Investigation stratifying by stage found that APLP1 and PLPP2 overexpression were significantly associated with poorer OS in the early stage (Quartile 1 vs. Quartile 4, HR = 3.87, 95% CI:1.25-11.97, P = 0.02 and HR = 4.77, 95% CI:1.37-16.57, P = 0.04 respectively). These genes are potential biomarkers of ccRCC aggressiveness and prognosis that direct clinical and surgical management.

透明细胞肾细胞癌(ccRCC)是肾癌中最常见的亚型,但分子生物标志物尚未用于ccRCC的预后来辅助临床决策。本研究旨在鉴定与ccRCC侵袭性和总生存率(OS)相关的基因。从33例接受肾切除术的患者中获得ccRCC肿瘤组织样本。采用全转录组测序测定基因表达。使用癌症基因组图谱肾透明细胞癌(TCGA-KIRC) RNA-seq数据来检测与OS的相关性。290基因之间的差异表达肿瘤高和低阶段,规模、品位,和坏死(SSIGN)得分(≥7比≤3)与P ADJG6PD APLP1, GCNT3,和PLPP2也过度表达在晚期(III和IV)和优质(3和4)ccRCC和肿瘤坏死(P ADJAPLP1和PLPP2超表达明显与贫穷相关的操作系统在早期阶段(四分位数1和四分位数4,HR = 3.87, 95%置信区间CI: 1.25 - -11.97, P = 0.02和HR = 4.77, 95%置信区间CI: 1.37 - -16.57,P = 0.04)。这些基因是ccRCC侵袭性和预后的潜在生物标志物,指导临床和手术治疗。
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引用次数: 8
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Genes and Cancer
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