Pub Date : 2025-12-25DOI: 10.7507/1001-5515.202411036
Shanshan Ma, Wenting Wu, Hao Liu, Ming Liu, Fei Xing
The incidence of wounds or skin defects caused by trauma, infection, diabetes, and other factors has been increasing year by year, imposing a substantial burden on global healthcare systems. Metal-organic frameworks (MOFs) are nanomaterials formed by metal ions or metal clusters and organic ligands through coordination bonds, featuring high porosity, large specific surface area, tunable structure, and excellent biocompatibility. MOFs can regulate cellular behaviors and kill bacteria by releasing metal ions during degradation. Additionally, MOFs can act as carriers for delivering bioactive components to exert anti-inflammatory, antioxidant, and cell proliferation-promoting effects. By systematically reviewing relevant domestic and international literature, this paper summarized the synthesis methods, classification, and application strategies of various MOFs in the field of skin repair. On this basis, it also concluded the current challenges in this field and provided an outlook on its future development trends.
{"title":"[Application and research progress of metal-organic framework materials in skin repair].","authors":"Shanshan Ma, Wenting Wu, Hao Liu, Ming Liu, Fei Xing","doi":"10.7507/1001-5515.202411036","DOIUrl":"10.7507/1001-5515.202411036","url":null,"abstract":"<p><p>The incidence of wounds or skin defects caused by trauma, infection, diabetes, and other factors has been increasing year by year, imposing a substantial burden on global healthcare systems. Metal-organic frameworks (MOFs) are nanomaterials formed by metal ions or metal clusters and organic ligands through coordination bonds, featuring high porosity, large specific surface area, tunable structure, and excellent biocompatibility. MOFs can regulate cellular behaviors and kill bacteria by releasing metal ions during degradation. Additionally, MOFs can act as carriers for delivering bioactive components to exert anti-inflammatory, antioxidant, and cell proliferation-promoting effects. By systematically reviewing relevant domestic and international literature, this paper summarized the synthesis methods, classification, and application strategies of various MOFs in the field of skin repair. On this basis, it also concluded the current challenges in this field and provided an outlook on its future development trends.</p>","PeriodicalId":39324,"journal":{"name":"生物医学工程学杂志","volume":"42 6","pages":"1303-1308"},"PeriodicalIF":0.0,"publicationDate":"2025-12-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12744977/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145834714","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-25DOI: 10.7507/1001-5515.202501064
Chenlu Zhong, Ye Zhu, Xiang Gu
Warfarin, a classic oral anticoagulant, is characterized by a narrow therapeutic window and considerable interindividual variability in dosing requirements. This makes precise dose adjustment challenging in clinical practice and increases the risk of bleeding or thrombosis. To improve dose prediction, this study developed a streamlined multilayer perceptron (MLP) model using real-world data from the International Warfarin Pharmacogenomics Consortium (IWPC) database. The LASSO-proj algorithm was applied for high-precision feature selection prior to model construction. The resulting model demonstrated strong predictive performance on the test set, achieving a coefficient of determination ( R2) of 0.456, a mean absolute error (MAE) of 8.92 mg/week, and 48.522% of its predictions falling within ±20% of the actual stable therapeutic dose. Through SHAP-based interpretation using DeepExplainer, key features influencing warfarin dosing were identified, including the VKORC1 genotype, body weight, age, and ethnicity. The interpretable MLP framework incorporating LASSO-proj not only maintains high predictive accuracy, but also significantly enhances model transparency, providing a valuable tool for guiding warfarin therapy.
{"title":"[Application of an interpretable neural network framework based on the LASSO-proj algorithm for warfarin dose prediction].","authors":"Chenlu Zhong, Ye Zhu, Xiang Gu","doi":"10.7507/1001-5515.202501064","DOIUrl":"10.7507/1001-5515.202501064","url":null,"abstract":"<p><p>Warfarin, a classic oral anticoagulant, is characterized by a narrow therapeutic window and considerable interindividual variability in dosing requirements. This makes precise dose adjustment challenging in clinical practice and increases the risk of bleeding or thrombosis. To improve dose prediction, this study developed a streamlined multilayer perceptron (MLP) model using real-world data from the International Warfarin Pharmacogenomics Consortium (IWPC) database. The LASSO-proj algorithm was applied for high-precision feature selection prior to model construction. The resulting model demonstrated strong predictive performance on the test set, achieving a coefficient of determination ( <i>R</i> <sup>2</sup>) of 0.456, a mean absolute error (MAE) of 8.92 mg/week, and 48.522% of its predictions falling within ±20% of the actual stable therapeutic dose. Through SHAP-based interpretation using DeepExplainer, key features influencing warfarin dosing were identified, including the <i>VKORC1</i> genotype, body weight, age, and ethnicity. The interpretable MLP framework incorporating LASSO-proj not only maintains high predictive accuracy, but also significantly enhances model transparency, providing a valuable tool for guiding warfarin therapy.</p>","PeriodicalId":39324,"journal":{"name":"生物医学工程学杂志","volume":"42 6","pages":"1235-1241"},"PeriodicalIF":0.0,"publicationDate":"2025-12-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12744988/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145834721","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-25DOI: 10.7507/1001-5515.202503016
Yue Zhang, Yifei Zhang, Baojie Xie, Dakun Lai
Automated detection of myocardial infarction (MI) is crucial for preventing sudden cardiac death and enabling early intervention in cardiovascular diseases. This paper proposes a deep learning framework based on a lightweight convolutional neural network (CNN) combined with one-dimensional gradient-weighted class activation mapping (1D Grad-CAM) for the automated detection of MI and the visualization of key waveform features in single-lead electrocardiograms (ECGs). The proposed method was evaluated using a total of 432 records from the Physikalisch-Technische Bundesanstalt Diagnostic ECG Database (PTBDB) and the Normal Sinus Rhythm Database (NSRDB), comprising 334 MI and 98 normal ECGs. Experimental results demonstrated that the model achieved an accuracy, sensitivity, and specificity of 95.75%, 96.03%, and 95.47%, respectively, in MI detection. Furthermore, the visualization results indicated that the model's decision-making process aligned closely with clinically critical features, including pathological Q waves, ST-segment elevation, and T-wave inversion. This study confirms that the proposed deep learning algorithm combined with explainable technology performs effectively in the intelligent diagnosis of MI and the visualization of critical ECG waveforms, demonstrating its potential as a useful tool for early MI risk assessment and computer-aided diagnosis.
{"title":"[Automatic detection and visualization of myocardial infarction in electrocardiograms based on an interpretable deep learning model].","authors":"Yue Zhang, Yifei Zhang, Baojie Xie, Dakun Lai","doi":"10.7507/1001-5515.202503016","DOIUrl":"10.7507/1001-5515.202503016","url":null,"abstract":"<p><p>Automated detection of myocardial infarction (MI) is crucial for preventing sudden cardiac death and enabling early intervention in cardiovascular diseases. This paper proposes a deep learning framework based on a lightweight convolutional neural network (CNN) combined with one-dimensional gradient-weighted class activation mapping (1D Grad-CAM) for the automated detection of MI and the visualization of key waveform features in single-lead electrocardiograms (ECGs). The proposed method was evaluated using a total of 432 records from the Physikalisch-Technische Bundesanstalt Diagnostic ECG Database (PTBDB) and the Normal Sinus Rhythm Database (NSRDB), comprising 334 MI and 98 normal ECGs. Experimental results demonstrated that the model achieved an accuracy, sensitivity, and specificity of 95.75%, 96.03%, and 95.47%, respectively, in MI detection. Furthermore, the visualization results indicated that the model's decision-making process aligned closely with clinically critical features, including pathological Q waves, ST-segment elevation, and T-wave inversion. This study confirms that the proposed deep learning algorithm combined with explainable technology performs effectively in the intelligent diagnosis of MI and the visualization of critical ECG waveforms, demonstrating its potential as a useful tool for early MI risk assessment and computer-aided diagnosis.</p>","PeriodicalId":39324,"journal":{"name":"生物医学工程学杂志","volume":"42 6","pages":"1154-1162"},"PeriodicalIF":0.0,"publicationDate":"2025-12-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12744966/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145834858","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
This study proposes an automated neurofibroma detection method for whole-body magnetic resonance imaging (WBMRI) based on radiomics and ensemble learning. A dynamic weighted box fusion mechanism integrating two dimensional (2D) object detection and three dimensional (3D) segmentation is developed, where the fusion weights are dynamically adjusted according to the respective performance of the models in different tasks. The 3D segmentation model leverages spatial structural information to effectively compensate for the limited boundary perception capability of 2D methods. In addition, a radiomics-based false positive reduction strategy is introduced to improve the robustness of the detection system. The proposed method is evaluated on 158 clinical WBMRI cases with a total of 1,380 annotated tumor samples, using five-fold cross-validation. Experimental results show that, compared with the best-performing single model, the proposed approach achieves notable improvements in average precision, sensitivity, and overall performance metrics, while reducing the average number of false positives by 17.68. These findings demonstrate that the proposed method achieves high detection accuracy with enhanced false positive suppression and strong generalization potential.
{"title":"[Detection of neurofibroma combining radiomics and ensemble learning].","authors":"Yunpeng Liu, Dangzhi Wencheng, Ying Wang, Yipeng Wang, Yuzan Yan, Kaifeng Gan, Tiejun Pan","doi":"10.7507/1001-5515.202502037","DOIUrl":"10.7507/1001-5515.202502037","url":null,"abstract":"<p><p>This study proposes an automated neurofibroma detection method for whole-body magnetic resonance imaging (WBMRI) based on radiomics and ensemble learning. A dynamic weighted box fusion mechanism integrating two dimensional (2D) object detection and three dimensional (3D) segmentation is developed, where the fusion weights are dynamically adjusted according to the respective performance of the models in different tasks. The 3D segmentation model leverages spatial structural information to effectively compensate for the limited boundary perception capability of 2D methods. In addition, a radiomics-based false positive reduction strategy is introduced to improve the robustness of the detection system. The proposed method is evaluated on 158 clinical WBMRI cases with a total of 1,380 annotated tumor samples, using five-fold cross-validation. Experimental results show that, compared with the best-performing single model, the proposed approach achieves notable improvements in average precision, sensitivity, and overall performance metrics, while reducing the average number of false positives by 17.68. These findings demonstrate that the proposed method achieves high detection accuracy with enhanced false positive suppression and strong generalization potential.</p>","PeriodicalId":39324,"journal":{"name":"生物医学工程学杂志","volume":"42 6","pages":"1205-1215"},"PeriodicalIF":0.0,"publicationDate":"2025-12-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12744974/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145834861","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The human femur is in a relatively complex mechanical environment, subject to the combined effects of multiple factors such as mechanical loads from movement and weight-bearing, as well as changes in the body fluid environment in daily life. In in vitro testing cases of the femur (e.g., testing of distal femoral fractures), changes in load conditions usually significantly affect the mechanical properties of the overall structure. However, there is currently no systematic evaluation standard for in vitro mechanical performance testing of the femur. Therefore, this paper established four human femur models (model A~model D) constructed based on computed tomography (CT) under different load environments, as well as two artificially synthesized femur models (the finite-element model and the experimental model) under the same load environment. Among them, for the human femur models, model A was configured to apply hip joint contact forces together with all muscle forces to approximate the real in vivo mechanical environment, model B was applied with hip joint contact force and abductor muscle force, model C was only applied with hip joint contact force, and model D was subjected to an equivalent resultant force. For the artificially synthesized femur models, both the finite-element model and the experimental model were applied with the same equivalent resultant force as model D. Comparative analyses revealed that model D exhibited femoral head displacement and stress-strain distributions similar to Model A, indicating its suitability as an equivalent in vitro test model. Further comparison between the finite-element and experimental synthetic femur models yielded consistent mechanical responses, thereby validating the equivalent model. In summary, it is hoped that the findings of this study will provide a reference for establishing a systematic, tiered preclinical evaluation system for hip prostheses/implants in the future.
{"title":"[Establishment and comparative analysis of femoral biomechanical equivalent model].","authors":"Hongxing Shi, Xiaogang Zhang, Tongyu Wu, Gambill Sherri, Yali Zhang, Zhongmin Jin","doi":"10.7507/1001-5515.202506052","DOIUrl":"10.7507/1001-5515.202506052","url":null,"abstract":"<p><p>The human femur is in a relatively complex mechanical environment, subject to the combined effects of multiple factors such as mechanical loads from movement and weight-bearing, as well as changes in the body fluid environment in daily life. In <i>in vitro</i> testing cases of the femur (e.g., testing of distal femoral fractures), changes in load conditions usually significantly affect the mechanical properties of the overall structure. However, there is currently no systematic evaluation standard for <i>in vitro</i> mechanical performance testing of the femur. Therefore, this paper established four human femur models (model A~model D) constructed based on computed tomography (CT) under different load environments, as well as two artificially synthesized femur models (the finite-element model and the experimental model) under the same load environment. Among them, for the human femur models, model A was configured to apply hip joint contact forces together with all muscle forces to approximate the real <i>in vivo</i> mechanical environment, model B was applied with hip joint contact force and abductor muscle force, model C was only applied with hip joint contact force, and model D was subjected to an equivalent resultant force. For the artificially synthesized femur models, both the finite-element model and the experimental model were applied with the same equivalent resultant force as model D. Comparative analyses revealed that model D exhibited femoral head displacement and stress-strain distributions similar to Model A, indicating its suitability as an equivalent <i>in vitro</i> test model. Further comparison between the finite-element and experimental synthetic femur models yielded consistent mechanical responses, thereby validating the equivalent model. In summary, it is hoped that the findings of this study will provide a reference for establishing a systematic, tiered preclinical evaluation system for hip prostheses/implants in the future.</p>","PeriodicalId":39324,"journal":{"name":"生物医学工程学杂志","volume":"42 6","pages":"1257-1264"},"PeriodicalIF":0.0,"publicationDate":"2025-12-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12980023/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145834875","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-25DOI: 10.7507/1001-5515.202412074
Wenyang Yang, Ruijie Zhang, Steven Keung
Quantitative magnetic susceptibility imaging (QSM) is an imaging method based on magnetic resonance imaging (MRI) phase signal processing and inversion to obtain tissue magnetic susceptibility distribution, which can generate images reflecting the magnetic characteristics of tissues. QSM reconstruction process is complex, in which dipole inversion stage is the most challenging and decisive link, and traditional methods are easily affected by pathological conditions at this stage, resulting in artifacts and deviations. With the development of deep learning and machine vision technology, using U-network (U-Net) model to improve dipole inversion process can effectively avoid the shortcomings of traditional algorithms. In this paper, the application of the improved model based on U-Net architecture in dipole inversion from 2020 to now is summarized. Firstly, the theoretical concept of QSM is introduced. Secondly, the existing improved models based on U-Net architecture are divided into three categories: improved U-Net based on structural optimization, improved U-Net based on physical constraints and improved U-Net based on improving generalization ability, and their main characteristics and design starting points are sorted out. Finally, the development trend of the future model is prospected and summarized. To sum up, it is expected that the difficulties and challenges of dipole inversion will be solved, the accuracy of QSM images will be improved, and support for disease-aided diagnosis will be provided by summarizing and comparing different improved U-Net models in this paper.
{"title":"[Research progress on quantitative magnetic susceptibility imaging reconstruction method based on improved U-network model].","authors":"Wenyang Yang, Ruijie Zhang, Steven Keung","doi":"10.7507/1001-5515.202412074","DOIUrl":"10.7507/1001-5515.202412074","url":null,"abstract":"<p><p>Quantitative magnetic susceptibility imaging (QSM) is an imaging method based on magnetic resonance imaging (MRI) phase signal processing and inversion to obtain tissue magnetic susceptibility distribution, which can generate images reflecting the magnetic characteristics of tissues. QSM reconstruction process is complex, in which dipole inversion stage is the most challenging and decisive link, and traditional methods are easily affected by pathological conditions at this stage, resulting in artifacts and deviations. With the development of deep learning and machine vision technology, using U-network (U-Net) model to improve dipole inversion process can effectively avoid the shortcomings of traditional algorithms. In this paper, the application of the improved model based on U-Net architecture in dipole inversion from 2020 to now is summarized. Firstly, the theoretical concept of QSM is introduced. Secondly, the existing improved models based on U-Net architecture are divided into three categories: improved U-Net based on structural optimization, improved U-Net based on physical constraints and improved U-Net based on improving generalization ability, and their main characteristics and design starting points are sorted out. Finally, the development trend of the future model is prospected and summarized. To sum up, it is expected that the difficulties and challenges of dipole inversion will be solved, the accuracy of QSM images will be improved, and support for disease-aided diagnosis will be provided by summarizing and comparing different improved U-Net models in this paper.</p>","PeriodicalId":39324,"journal":{"name":"生物医学工程学杂志","volume":"42 6","pages":"1281-1288"},"PeriodicalIF":0.0,"publicationDate":"2025-12-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12744967/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145834977","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-25DOI: 10.7507/1001-5515.202412022
Xue Chen, Guizhi Xu
With the intensification of global aging trends and the continuous rise in the incidence of chronic diseases, the demand for health monitoring and early intervention has become increasingly urgent. Owing to their non-invasive nature, portability, and comfort, flexible wearable sensors have emerged as a key technology driving the development of personalized healthcare. Starting from specific application scenarios in health monitoring, this article systematically reviews recent research advances in flexible sensors within the healthcare field. Firstly, it outlines the design fundamentals of flexible sensors. This is followed by a focused analysis of their specific applications in monitoring vital signs, biochemical markers, as well as motion and neural activities, along with an in-depth exploration of the clinical significance, technical challenges, and targeted solutions in different scenarios. Finally, the current technical bottlenecks and clinical challenges are summarized, and an outlook on the future development of health monitoring systems is provided. This review aims to provide a systematic reference for the deep integration of flexible electronics technology and medicine.
{"title":"[Research progress on flexible wearable sensors for health monitoring].","authors":"Xue Chen, Guizhi Xu","doi":"10.7507/1001-5515.202412022","DOIUrl":"10.7507/1001-5515.202412022","url":null,"abstract":"<p><p>With the intensification of global aging trends and the continuous rise in the incidence of chronic diseases, the demand for health monitoring and early intervention has become increasingly urgent. Owing to their non-invasive nature, portability, and comfort, flexible wearable sensors have emerged as a key technology driving the development of personalized healthcare. Starting from specific application scenarios in health monitoring, this article systematically reviews recent research advances in flexible sensors within the healthcare field. Firstly, it outlines the design fundamentals of flexible sensors. This is followed by a focused analysis of their specific applications in monitoring vital signs, biochemical markers, as well as motion and neural activities, along with an in-depth exploration of the clinical significance, technical challenges, and targeted solutions in different scenarios. Finally, the current technical bottlenecks and clinical challenges are summarized, and an outlook on the future development of health monitoring systems is provided. This review aims to provide a systematic reference for the deep integration of flexible electronics technology and medicine.</p>","PeriodicalId":39324,"journal":{"name":"生物医学工程学杂志","volume":"42 6","pages":"1273-1280"},"PeriodicalIF":0.0,"publicationDate":"2025-12-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12744975/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145834986","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-25DOI: 10.7507/1001-5515.202412024
Fei Xiong, Haiming Lu, Linfeng Li, Rui Jiang
Medical images of coronary artery plaque are always accompanied by the situation of extreme class imbalance. The traditional two-step methods locate the region of interest (ROI) in the sample firstly, and then segment the sample within the ROI. On the other hand, the traditional resampling methods use resampling strategies to increase the number of minority class samples to mitigate the effects of class imbalance. These two types of methods either make the network structure more complex or decrease training efficiency and performance of the model due to the increase of samples. This paper proposes a method including a novel focal weighted accuracy loss function and improved metrics evaluation algorithms to address the issues in the segmentation of coronary artery calcification plaque mentioned above. Experimental results on the selected dataset show the proposed method increased the training speed and improved the segmentation performance of the model without performing resampling on the dataset. Specifically, the F1-score was 0.873 5, the precision was 0.929 6, and the recall was 0.823 8. The F1-score was largely improved compared with the method using focal loss function. Furthermore, compared with methods with multiple models and methods via resampling the minority class samples, research results demonstrate that the proposed method improved the accuracy and efficiency in coronary artery plaque segmentation while has a shorter training time, which lays the foundation for improving the efficiency and scientific nature of diagnosing related diseases in the future.
{"title":"[A coronary artery plaque segmentation method based on focal weighted accuracy loss function].","authors":"Fei Xiong, Haiming Lu, Linfeng Li, Rui Jiang","doi":"10.7507/1001-5515.202412024","DOIUrl":"10.7507/1001-5515.202412024","url":null,"abstract":"<p><p>Medical images of coronary artery plaque are always accompanied by the situation of extreme class imbalance. The traditional two-step methods locate the region of interest (ROI) in the sample firstly, and then segment the sample within the ROI. On the other hand, the traditional resampling methods use resampling strategies to increase the number of minority class samples to mitigate the effects of class imbalance. These two types of methods either make the network structure more complex or decrease training efficiency and performance of the model due to the increase of samples. This paper proposes a method including a novel focal weighted accuracy loss function and improved metrics evaluation algorithms to address the issues in the segmentation of coronary artery calcification plaque mentioned above. Experimental results on the selected dataset show the proposed method increased the training speed and improved the segmentation performance of the model without performing resampling on the dataset. Specifically, the F1-score was 0.873 5, the precision was 0.929 6, and the recall was 0.823 8. The F1-score was largely improved compared with the method using focal loss function. Furthermore, compared with methods with multiple models and methods via resampling the minority class samples, research results demonstrate that the proposed method improved the accuracy and efficiency in coronary artery plaque segmentation while has a shorter training time, which lays the foundation for improving the efficiency and scientific nature of diagnosing related diseases in the future.</p>","PeriodicalId":39324,"journal":{"name":"生物医学工程学杂志","volume":"42 6","pages":"1163-1171"},"PeriodicalIF":0.0,"publicationDate":"2025-12-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12744989/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145834706","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-25DOI: 10.7507/1001-5515.202502039
Yang Li, Chenmiao Ruan, Dongsheng Ruan
Three-dimensional (3D) deformable image registration plays a critical role in 3D medical image processing. This technique aligns images from different time points, modalities, or individuals in 3D space, enabling the comparison and fusion of anatomical or functional information. To simultaneously capture the local details of anatomical structures and the long-range dependencies in 3D medical images, while reducing the high costs of manual annotations, this paper proposes an unsupervised 3D medical image registration method based on shifted window Transformer and convolutional neural network (CNN), termed Swin Transformer-CNN-hybrid network (STCHnet). In the encoder part, STCHnet uses Swin Transformer and CNN to extract global and local features from 3D images, respectively, and optimizes feature representation through feature fusion. In the decoder part, STCHnet utilizes Swin Transformer to integrate information globally, and CNN to refine local details, reducing the complexity of the deformation field while maintaining registration accuracy. Experiments on the information extraction from images (IXI) and open access series of imaging studies (OASIS) datasets, along with qualitative and quantitative comparisons with existing registration methods, demonstrate that the proposed STCHnet outperforms baseline methods in terms of Dice similarity coefficient (DSC) and standard deviation of the log-Jacobian determinant (SDlogJ), achieving improved 3D medical image registration performance under unsupervised conditions.
{"title":"[An unsupervised three-dimensional medical image registration method based on shifted window Transformer and convolutional neural network].","authors":"Yang Li, Chenmiao Ruan, Dongsheng Ruan","doi":"10.7507/1001-5515.202502039","DOIUrl":"10.7507/1001-5515.202502039","url":null,"abstract":"<p><p>Three-dimensional (3D) deformable image registration plays a critical role in 3D medical image processing. This technique aligns images from different time points, modalities, or individuals in 3D space, enabling the comparison and fusion of anatomical or functional information. To simultaneously capture the local details of anatomical structures and the long-range dependencies in 3D medical images, while reducing the high costs of manual annotations, this paper proposes an unsupervised 3D medical image registration method based on shifted window Transformer and convolutional neural network (CNN), termed Swin Transformer-CNN-hybrid network (STCHnet). In the encoder part, STCHnet uses Swin Transformer and CNN to extract global and local features from 3D images, respectively, and optimizes feature representation through feature fusion. In the decoder part, STCHnet utilizes Swin Transformer to integrate information globally, and CNN to refine local details, reducing the complexity of the deformation field while maintaining registration accuracy. Experiments on the information extraction from images (IXI) and open access series of imaging studies (OASIS) datasets, along with qualitative and quantitative comparisons with existing registration methods, demonstrate that the proposed STCHnet outperforms baseline methods in terms of Dice similarity coefficient (DSC) and standard deviation of the log-Jacobian determinant (SDlogJ), achieving improved 3D medical image registration performance under unsupervised conditions.</p>","PeriodicalId":39324,"journal":{"name":"生物医学工程学杂志","volume":"42 6","pages":"1226-1234"},"PeriodicalIF":0.0,"publicationDate":"2025-12-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12744983/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145834709","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-25DOI: 10.7507/1001-5515.202506049
Yang Liu, Chunsheng Li, Yuxuan Han
For patients with MRI-negative drug-resistant epilepsy, noninvasive localization of targets for transcranial electrical stimulation (tES) remains a clinical challenge. This study proposes a novel target localization approach that integrates electroencephalogram source imaging, brain network analysis, and a neural computational model. We analyzed electrocorticography (ECoG) data from 12 patients, quantified the epileptogenicity of epileptic network nodes, and noninvasively located optimal stimulation targets. Three source imaging methods and two brain network reconstruction measures were compared for localization performance. Among four patients with good outcomes, the method accurately localized epileptogenic tissues in three. Results of tES simulation demonstrated that cathodal direct current stimulation of the target region significantly reduced the brain network's epileptogenicity. This study provides a noninvasive, quantifiable targeting strategy for tES therapy in epilepsy patients.
{"title":"[Localizing target for transcranial electrical stimulation in epilepsy patients combining scalp electroencephalogram and neural computational model].","authors":"Yang Liu, Chunsheng Li, Yuxuan Han","doi":"10.7507/1001-5515.202506049","DOIUrl":"10.7507/1001-5515.202506049","url":null,"abstract":"<p><p>For patients with MRI-negative drug-resistant epilepsy, noninvasive localization of targets for transcranial electrical stimulation (tES) remains a clinical challenge. This study proposes a novel target localization approach that integrates electroencephalogram source imaging, brain network analysis, and a neural computational model. We analyzed electrocorticography (ECoG) data from 12 patients, quantified the epileptogenicity of epileptic network nodes, and noninvasively located optimal stimulation targets. Three source imaging methods and two brain network reconstruction measures were compared for localization performance. Among four patients with good outcomes, the method accurately localized epileptogenic tissues in three. Results of tES simulation demonstrated that cathodal direct current stimulation of the target region significantly reduced the brain network's epileptogenicity. This study provides a noninvasive, quantifiable targeting strategy for tES therapy in epilepsy patients.</p>","PeriodicalId":39324,"journal":{"name":"生物医学工程学杂志","volume":"42 6","pages":"1123-1130"},"PeriodicalIF":0.0,"publicationDate":"2025-12-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12744985/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145834860","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}