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Advantages and Limitations of the Biofilm Study Methods 生物膜研究方法的优势和局限性
IF 1 4区 生物学 Q4 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-04-21 DOI: 10.1134/S000368382402011X
D. H. Mir, M. A. Rather

A community of microorganisms adhered to a solid surface and entrapped in a self-produced extracellular polymeric matrix, in general is referred to as a ‘biofilm’. Biofilm formation is a phenomenon naturally exhibited by the majority of microorganisms, (except a few like Pelagibacter and some planktonic bacteria). The trait of biofilm formation by the microorganisms allows them to survive in harsh environments, important for their existence and sustenance. To form biofilms, microorganisms possess a supportive genetic makeup, which enables them to function and grow in a coordinated manner. Surprisingly at present, there is a lack of proper consensus regarding the utilization of technique and methodologies available in the precise analysis, growth and characterization of biofilms. The current review aims to bridge this gap by presenting a detailed review of the available study methods and tools the most promising in the detection, growth and characterization of biofilms. The selection of the most appropriate biofilm study and analysis method in a given situation is of utmost importance in order to understand the formation and prospective fruitful utilization of biofilms by humankind.

一般来说,粘附在固体表面并被包裹在自我产生的胞外聚合物基质中的微生物群落被称为 "生物膜"。生物膜的形成是大多数微生物(除了天竺细菌和一些浮游细菌等少数微生物)的自然现象。微生物形成生物膜的特性使它们能够在恶劣的环境中生存,这对它们的生存和维系非常重要。要形成生物膜,微生物必须具备支持性基因构成,使其能够以协调的方式运作和生长。令人惊讶的是,目前在利用现有技术和方法对生物膜进行精确分析、生长和特征描述方面还缺乏适当的共识。本综述旨在通过对生物膜检测、生长和表征方面最有前景的现有研究方法和工具进行详细评述,弥补这一不足。在特定情况下,选择最合适的生物膜研究和分析方法对于了解生物膜的形成和人类对生物膜的富有成效的利用前景至关重要。
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引用次数: 0
Chitosan-Based Functional Coatings for Postharvest Processing of Tomatoes 基于壳聚糖的番茄采后加工功能涂层
IF 1 4区 生物学 Q4 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-04-21 DOI: 10.1134/S0003683824020066
A. V. Il’ina, B. Ts. Shagdarova, A. A. Zubareva, V. P. Varlamov

This review article includes information on the use of coatings, both from chitosan itself and in combination with other polysaccharides and functional compounds, for postharvest processing, mainly of tomatoes, to extend the shelf life of harvested produce. During harvesting of fruit and vegetables, losses due to fungal infection can be as high as 50%. To prevent yield losses and preserve fruit quality, various methods of postharvest treatment are used. Currently, the most effective means used to control postharvest diseases are synthetic fungicides, but their uncontrolled use negatively affects human health and the environment. Recently, there has been a continuing trend to increase the use of natural antimicrobial agents. Such natural compounds can be chitin and chitosan, as they are renewable, biodegradable, have low toxicity, and are safe for consumers and the environment. The film-forming ability of chitosan and its antimicrobial and antioxidant properties are important for obtaining functional coatings for postharvest processing of fruit.

这篇综述文章介绍了利用壳聚糖本身以及与其他多糖和功能化合物结合制成的涂层进行采后加工(主要是番茄的采后加工)以延长采收产品货架期的情况。在收获水果和蔬菜的过程中,由于真菌感染造成的损失可高达 50%。为了防止产量损失和保持水果质量,人们采用了各种采后处理方法。目前,控制采后病害最有效的方法是合成杀菌剂,但无节制地使用会对人类健康和环境造成负面影响。最近,越来越多地使用天然抗菌剂已成为一种持续趋势。这些天然化合物可以是甲壳素和壳聚糖,因为它们可再生、可生物降解、毒性低,而且对消费者和环境安全。壳聚糖的成膜能力及其抗菌和抗氧化特性对于获得用于水果采后加工的功能性涂层非常重要。
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引用次数: 0
Structural and Functional Impacts of Extended N-Terminal End of the Small Heat Shock Protein Tpv HSP 14.3 小型热休克蛋白 Tpv HSP 14.3 N 端延长的结构和功能影响
IF 1 4区 生物学 Q4 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-04-21 DOI: 10.1134/S0003683824020200
S. Zabci, S. Kocabiyik

Small heat shock proteins (sHSPs) are composed of the α-crystallin domain, which is highly conserved, and variable N-terminal and C-terminal domains. In contrast to the α-crystallin domain, structures of the flanking N- and C-terminal domains are poorly defined. The N-terminal domain is the most divergent region in sequence and length among small heat shock proteins. In this study, to provide further insight into the importance of N-terminal tags in the chaperone function of small heat shock proteins, two variants of Tpv HSP 14.3 containing polyhistidine tags (11-aa and 26-aa in length) in the proximal part of their N-termini were used. These variants were generated by expressing the cloned Tpv HSP 14.3 gene in Escherichia coli using the expression vectors pQE-31 and TAGZyme pQE-2. The His-tagged recombinant proteins were purified by affinity chromatography. The effects of poly-His tags on chaperone activity of the Tpv HSP 14.3 were evaluated using pig heart citrate synthase as the model substrate. The results showed that Tpv HSP 14.3 variants with N-terminal tags were more effective chaperones than the one without tag. In addition, the alterations in intrinsically disordered states of N-termini were analyzed by means of the PONDR predictor. The results indicated that the disordered nature of the fused tags and additional hydrophobic residues they contributed to the N terminus may increase the capacity of Tpv HSP 14.3 to interact with its substrate protein and thereby improve its chaperone activity.

小热休克蛋白(sHSPs)由高度保守的α-结晶素结构域以及可变的N-端和C-端结构域组成。与 α-结晶素结构域不同,侧翼 N 端和 C 端结构域的结构尚不明确。N 端结构域是小型热休克蛋白中序列和长度差异最大的区域。在本研究中,为了进一步了解 N 端标签在小型热休克蛋白伴侣功能中的重要性,我们使用了两个在 Tpv HSP 14.3 的 N 端近端部分含有聚组氨酸标签(长度分别为 11-aa 和 26-aa)的变体。这些变体是通过使用表达载体 pQE-31 和 TAGZyme pQE-2 在大肠杆菌中表达克隆的 Tpv HSP 14.3 基因产生的。用亲和层析法纯化了 His 标记的重组蛋白。以猪心柠檬酸合成酶为模型底物,评估了多His标签对Tpv HSP 14.3伴侣活性的影响。结果表明,带有 N 端标签的 Tpv HSP 14.3 变体比不带有标签的变体更有效。此外,还利用 PONDR 预测器分析了 N 端内在无序状态的变化。结果表明,融合标签的无序性及其在 N 端贡献的额外疏水残基可能会增加 Tpv HSP 14.3 与其底物蛋白相互作用的能力,从而提高其伴侣活性。
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引用次数: 0
Biological Activity of Chitosan Nanoparticle Dispersions Produced by Fractional Precipitation 分段沉淀法制备的壳聚糖纳米粒子分散体的生物活性
IF 1 4区 生物学 Q4 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-04-21 DOI: 10.1134/S0003683824020145
E. V. Popova, N. S. Domnina, I. I. Novikova, N. M. Kovalenko, I. L. Krasnobaeva, I. M. Zorin

An assessment of the antifungal and immunomodulatory activity of dispersions of chitosan nanoparticles obtained by fractional precipitation at pH 5.0 and pH 7.5 using chitosan of different molecular weights was made. The dispersion of nanoparticles obtained at pH 5 has increased fungistatic activity against C. sativus and A. solani, due to the higher availability of amino groups in looser nanoparticles. This dispersion showed immunostimulating activity, increasing the resistance of wheat to dark brown spot. It was also established that the elicitor activity of dispersions of chitosan nanoparticles is significantly higher than the activity of solutions of the original polymer.

通过使用不同分子量的壳聚糖在 pH 值为 5.0 和 pH 值为 7.5 的条件下进行分馏沉淀得到的壳聚糖纳米粒子分散体的抗真菌和免疫调节活性进行了评估。在 pH 值为 5 时获得的纳米颗粒分散液对 C. sativus 和 A. solani 的抑菌活性更高,这是因为在较松散的纳米颗粒中氨基的可用性更高。这种分散体具有免疫刺激活性,能提高小麦对黑褐斑病的抗性。研究还证实,壳聚糖纳米颗粒分散体的诱导剂活性明显高于原始聚合物溶液的活性。
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引用次数: 0
Characterization of Bacterial Isolates from Tailings Pond and Their Resistance to Heavy Metals and Antibiotics 尾矿池细菌分离物的特征及其对重金属和抗生素的耐药性
IF 1 4区 生物学 Q4 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-04-21 DOI: 10.1134/S0003683824020157
I. D. Radojević, K. G. Ćirković, M. Ž. Grujović, K. G. Mladenović, A. M. Ostojić

lWater samples were collected from a tailings pond wastewater site in the Rudnik mountain area, where polymetallic ore flotation processes generate high concentrations of Pb2+, Zn2+, and Cu2+. The study aimed to identify microorganisms resistant to heavy metals and assess their potential for bioremediation. Growth capabilities under varying conditions, including temperature, pH, and NaCl concentrations, were analyzed using a spectrophotometer. Minimal inhibitory and lethal concentrations of tested substances were determined for both planktonic cells and their biofilms. Key isolates, namely Bacillus altitudinis PMFKG-R3, B. pumilus PMFKG-R15, B. cereus PMFKG-R46, Pseudomonas veronii PMFKG-R30, and Pantoea agglomerans PMFKG-R20, demonstrated growth ability at both 22 and 37°C and exhibited halotolerance, albeit sensitivity to acidic pH. Most isolates in both planktonic and biofilm forms displayed notable resistance to heavy metals, particularly Pb2+ and Zn2+, in line with the sampling location. Notably, planktonic cells were sensitive to antibiotics, while biofilms exhibited slightly higher resistance. Promising candidates for bioremediation purposes were identified in P. veronii PMFKG-R30 and P. agglomerans PMFKG-R20, which displayed resistance to heavy metals and sensitivity to antibiotics.

l 水样采集自鲁德尼克山区的一个尾矿池废水处理场,那里的多金属矿浮选过程会产生高浓度的 Pb2+、Zn2+ 和 Cu2+。这项研究旨在确定对重金属具有抗性的微生物,并评估其进行生物修复的潜力。使用分光光度计分析了微生物在温度、pH 值和 NaCl 浓度等不同条件下的生长能力。测定了浮游细胞及其生物膜对测试物质的最小抑制浓度和致死浓度。主要分离菌株,即高度芽孢杆菌 PMFKG-R3、普米氏芽孢杆菌 PMFKG-R15、蜡样芽孢杆菌 PMFKG-R46、疣状假单胞菌 PMFKG-R30 和聚合泛德菌 PMFKG-R20,在 22 和 37 摄氏度的环境中均有生长能力,并表现出耐盐性,但对酸性 pH 值敏感。大多数浮游生物和生物膜形式的分离物对重金属,特别是 Pb2+ 和 Zn2+ 有明显的抗性,这与采样地点相符。值得注意的是,浮游细胞对抗生素敏感,而生物膜则表现出稍高的抗药性。P. veronii PMFKG-R30 和 P. agglomerans PMFKG-R20 显示出对重金属的抗性和对抗生素的敏感性,有望用于生物修复目的。
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引用次数: 0
The Influence of Chitosan on the Ability of LPS to Interact with Cells of the Immune System 壳聚糖对 LPS 与免疫系统细胞相互作用能力的影响
IF 1 4区 生物学 Q4 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-04-21 DOI: 10.1134/S0003683824020029
V. N. Davydova, A. V. Volod’ko, V. I. Gorbach, S. V. Chusovitina, T. F. Solov’eva, I. M. Yermak

Complexes of lipopolysaccharide (LPS) from the bacterium Escherichia coli and chitosan (CN) with a molecular weight of 5 kDa were obtained and their supramolecular organization was studied. Using atomic force microscopy, it was shown that during the formation of complexes there is a transition from the micellar structure of the original LPS to linear network structures uniformly distributed over the surface of mica. The stability of LPS-CN complexes of various stoichiometries in biological media in the presence of serum proteins was investigated. It was shown that complexes with an LPS–CN ratio of 1 : 1 in the presence of serum proteins lost their surface charge and tended to aggregate while complexes with the maximum saturation of CN (1 : 5) did not aggregate under these conditions and maintained their surface charge. The effect of CNs of different molecular weights on the ability of LPS to interact with neutrophils of human whole blood was studied. It was observed that LPS-CN complexes were capable of binding to neutrophils and internalazing the cell, and this ability was enhanced in the presence of serum proteins. Chitosan exhibited the ability to suppress the synthesis of the proinflammatory cytokine TNF-α induced by LPS, not only as part of the complex but also when cells were pretreated with a polycation.

研究人员获得了分子量为 5 kDa 的大肠杆菌脂多糖(LPS)与壳聚糖(CN)的复合物,并对其超分子组织结构进行了研究。原子力显微镜显示,在形成复合物的过程中,原始 LPS 的胶束结构转变为均匀分布在云母表面的线性网络结构。研究还考察了不同化学计量的 LPS-CN 复合物在有血清蛋白存在的生物介质中的稳定性。结果表明,在有血清蛋白存在的情况下,LPS-CN 比率为 1 : 1 的复合物会失去其表面电荷并趋于聚集,而 CN 饱和度最大(1 : 5)的复合物在这些条件下不会聚集并保持其表面电荷。研究了不同分子量的氯化萘对 LPS 与人体全血中性粒细胞相互作用能力的影响。结果表明,LPS-CN 复合物能够与中性粒细胞结合并内凝细胞,在有血清蛋白存在的情况下,这种能力会增强。壳聚糖能够抑制 LPS 诱导的促炎细胞因子 TNF-α 的合成,不仅是作为复合物的一部分,而且在用聚阳离子预处理细胞时也是如此。
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引用次数: 0
The Biological Efficiencies of Multifunctional Complexes Based on Bacillus subtilis Strains and Chitosan Salicylate in Wheat Cultivation 基于枯草芽孢杆菌菌株和壳聚糖水杨酸盐的多功能复合物在小麦栽培中的生物学效率
IF 1 4区 生物学 Q4 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-04-21 DOI: 10.1134/S0003683824020133
I. I. Novikova, L. E. Kolesnikov, E. V. Popova, B. A. Hassan, N. S. Priyatkin, D. Yu. Radishevskiy, I. L. Krasnobaeva, L. A. Higerovich, Yu. R. Kolesnikova

The influence of multifunctional complexes capable of causing a growth-stimulating effect on plants and inhibiting the development of a wide range of diseases on the Leningradka 6 spring soft wheat cultivar (k-64900) was investigated. In the research, it was found that the application of multifunctional complexes based on the Bacillus subtilis bacterial strains and 0.1% chitosan salicylate in wheat cultivation led to a significant decrease in the incidence of plant diseases: yellow and brown rust, powdery mildew, and root rot and caused an increase in morphometric productivity indicators. This tendency was associated with a significant influence of multifunctional complexes on the increase in the number of primary and nodal roots, the length of nodal roots, productive bushiness, the number of spikelets per spike, and the grains weight per spike. However, the effectiveness of protective and stimulating wheat treatments depended on the complex of natural and climatic factors of wheat vegetation seasons.

研究了能够对植物产生生长刺激作用并抑制多种病害发生的多功能复合物对列宁格勒6号春软小麦栽培品种(k-64900)的影响。研究发现,在小麦栽培中应用基于枯草芽孢杆菌菌株和 0.1% 水杨酸壳聚糖的多功能复合物后,植物病害(黄锈病、褐锈病、白粉病和根腐病)的发病率显著降低,形态生产力指标也有所提高。这种趋势与多功能复合物对增加主根和节根数量、节根长度、丰产性、每穗小穗数和每穗粒重的显著影响有关。不过,保护性和刺激性小麦处理的效果取决于小麦植被季节的自然和气候综合因素。
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引用次数: 0
The Effect of Bacillus subtilis in Combination with Chitosan Salicylate on Peroxidase and Catalase Activity in B. sorokiniana Infected Wheat 枯草芽孢杆菌与壳聚糖水杨酸盐复配对受 B. sorokiniana 感染小麦过氧化物酶和过氧化氢酶活性的影响
IF 1 4区 生物学 Q4 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-04-21 DOI: 10.1134/S0003683824020121
I. I. Novikova, E. V. Popova, N. M. Kovalenko, I. L. Krasnobaeva

The aim of this work was to study the effect of Bacillus subtilis strains VKM B-2604D and VKM B-2605D, which form the basis of the Vitaplan biological product, and their combinations with chitosan salicylate on antioxidant defense enzymes in the process of formation of resistance of wheat plants to infection with the dark brown blotch pathogen Bipolaris sorokiniana. In wheat plants treated with B. subtilis strains and their combinations with chitosan salicylate, upon subsequent infection, catalase and peroxidase are activated, which regulate the intensity of oxidative stress induced by the introduction of the pathogen. Taking the data we obtained into account, it can be assumed that the increase in plant resistance to the pathogen is realized through the control of the activity of antioxidant enzymes (in particular, catalase and peroxidase), which maintain the concentration of H2O2 at the level necessary for the neutralization of the phytopathogen in tissues, including the direct destruction of the invading pathogen and/or activation of crosslinking and lignification of the cell wall. These processes strengthen the cell wall and help contain the spread of the pathogen in the plant. At the same time, protective reactions are also switched on, leading to the development of induced resistance in wheat plants to dark brown spotting, which manifests itself in a decrease in the development of the disease by 25–45% relative to the infected control in the treated plants. The results indicate that the combination of active strains of microorganisms-antagonists of plant pathogens and chitosan salicylate is promising for increasing the biological efficiency and expanding the spectrum of action of the developed biological products.

这项工作的目的是研究构成维他普兰生物产品基础的枯草芽孢杆菌菌株 VKM B-2604D 和 VKM B-2605D 以及它们与壳聚糖水杨酸盐的组合在小麦植株形成对深褐色斑点病原体 Bipolaris sorokiniana 感染的抗性过程中对抗氧化防御酶的影响。在用枯草杆菌菌株及其与壳聚糖水杨酸盐的组合处理过的小麦植株中,在随后的感染过程中,过氧化氢酶和过氧化物酶被激活,从而调节病原体引入所诱发的氧化应激的强度。根据我们获得的数据,可以推测植物对病原体的抗性是通过控制抗氧化酶(特别是过氧化氢酶和过氧化物酶)的活性实现的,这些酶将 H2O2 的浓度维持在中和组织中植物病原体所需的水平,包括直接破坏入侵的病原体和/或激活细胞壁的交联和木质化。这些过程可强化细胞壁,有助于遏制病原体在植物体内的扩散。与此同时,保护性反应也被开启,导致小麦植株对暗褐斑病产生诱导抗性,表现为与受感染的对照组相比,处理过的植株发病率降低 25-45%。研究结果表明,将植物病原体拮抗剂微生物活性菌株与壳聚糖水杨酸盐相结合,有望提高生物效率,扩大所开发生物产品的作用范围。
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引用次数: 0
Disruption of RGD1 Gene Improves Acetic Acid Tolerance in Saccharomyces cerevisiae 干扰 RGD1 基因可提高酿酒酵母对醋酸的耐受性
IF 1 4区 生物学 Q4 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-04-21 DOI: 10.1134/S000368382402008X
H. S. Kim

This study aimed to identify genes related to acetic acid tolerance and elucidate the tolerance mechanism in yeast Saccharomyces cerevisiae as an appropriate eukaryote model. In this study, one tolerant strain exposed to acetic acid stress was isolated by screening a transposon-mediated mutant library and the disrupted gene was identified to be RGD1. In addition, this phenotype related to acetic acid tolerance was confirmed by deletion and overexpressing of this corresponding gene. This mutant strain showed activation of Hog1p and increased expression of the MSN2/4 and STRE-mediated genes such as CTT1 and HSP12 in response to acetic acid stress.

本研究旨在以酵母为合适的真核生物模型,鉴定与醋酸耐受性相关的基因,并阐明其耐受机制。本研究通过筛选转座子介导的突变体文库,分离出一株耐受醋酸胁迫的菌株,并确定其破坏的基因为 RGD1。此外,通过删除和过表达该相应基因,也证实了这种与醋酸耐受性相关的表型。该突变株在应对醋酸胁迫时表现出 Hog1p 的激活以及 MSN2/4 和 STRE 介导基因(如 CTT1 和 HSP12)的表达增加。
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引用次数: 0
Immobilization and Stabilization of the Pisum sativum Diamine Oxidase onto Chitosan-Modified Gold Electrode 将豌豆二胺氧化酶固定和稳定在壳聚糖改性金电极上
IF 1 4区 生物学 Q4 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-04-01 DOI: 10.1134/S0003683824010071
S. Kashyap, T. Kharewal, N. Tehri, N. Verma, A. Gahlaut, V. Hooda

In this work, the diamine oxidase (DAO) produced from pea seedlings was partially purified using ammonium sulphate precipitation, dialysis, and gel filtration chromatography. Partially purified DAO was immobilized covalently with the help of a cross-linker glutaraldehyde onto the chitosan- modified gold electrode. The properties of immobilized enzyme were evaluated by optimum pH, optimum temperature, activity recovery, and recyclability using putrescine dihydrochloride as substrate. After immobilization of DAO, optimum pH ranges from 6.0 to 7.0 did not change and optimum temperature of enzyme changed from 34 to 38°C in comparison to free DAO. The immobilized DAO preserved 81% activity of free DAO and permitted increased stability and reusability of the enzyme than its native form. After 15 cycles of usage, the immobilized DAO maintained around 51% of its original activity, and this activity prolonged for 30 days at 4°C.

在这项工作中,利用硫酸铵沉淀、透析和凝胶过滤色谱法对从豌豆幼苗中产生的二胺氧化酶(DAO)进行了部分纯化。利用交联剂戊二醛将部分纯化的 DAO 共价固定在壳聚糖修饰的金电极上。以盐酸腐胺为底物,通过最适 pH 值、最适温度、活性恢复和可回收性评估了固定化酶的特性。与游离 DAO 相比,固定 DAO 后,酶的最适 pH 值从 6.0 到 7.0 没有变化,最适温度从 34°C 到 38°C。固定化 DAO 保留了游离 DAO 81% 的活性,与原生形态的 DAO 相比,固定化 DAO 提高了酶的稳定性和可重复使用性。经过 15 次循环使用后,固定化 DAO 保持了约 51% 的原始活性,而且这种活性在 4°C 下可持续 30 天。
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引用次数: 0
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Applied Biochemistry and Microbiology
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