首页 > 最新文献

BMC Zoology最新文献

英文 中文
Multiple-biomarker approach in the assessment of bisphenol A effect on the grooved carpet clam Ruditapes decussatus (Linnaeus, 1758) 评估双酚 A 对槽毯蛤 Ruditapes decussatus (Linnaeus, 1758) 影响的多重生物标志物方法
IF 1.6 3区 生物学 Q2 ZOOLOGY Pub Date : 2024-08-12 DOI: 10.1186/s40850-024-00211-1
Ola Mohamed Nour, Salwa A. El-Saidy, Aml Z. Ghoneim
Bisphenol A (BPA), a plastic additive monomer, is among the most highly produced chemicals worldwide, and is broadly used in many industries, such as food and beverage containers, milk bottles, and paper products. Previous studies demonstrated that BPA has potential toxicity to aquatic organisms, causing endocrine disturbance and behavioural disorders. The current work aimed to determine the toxic impacts of BPA on the edible marine clam Ruditapes decussatus considering a multi-biomarker approach (mortality, biochemical studies, DNA strand breaks using comet assay, and histopathological examinations with semi-quantitative and quantitative histopathological analyses). The clams were exposed under laboratory conditions to three concentrations of BPA (0 “control”, 1, and 5 µg/L) for a period of 21 days. After the exposure period, BPA impacts were assessed in the digestive gland as a versatile and environmentally relevant organ for ecotoxicological studies. In BPA-treated clams, mortality (10%) occurred only at the highest BPA concentration (5 µg/L). Biochemical impairments were detected in a concentration-dependent manner as a consequence of BPA exposure. There were significant increases in malondialdehyde (MDA) and glutathione (GSH) levels, while catalase (CAT) activity was significantly reduced. Our results revealed that BPA induced neurotoxicity in R. decussatus, as evidenced by the inhibition of acetylcholinesterase (AChE) activity in a dose-dependent manner. Furthermore, DNA damage was strongly induced as BPA levels increased. Additionally, our results have been affirmed by alterations in digestive gland tissues at BPA treatments, which consequently can impair the clam’s ability for food absorption; these alterations included mainly atrophic and necrotic digestive tubules, epithelial cell vacuolization, hemocyte infiltration, and intertubular fibrosis. Based on the data obtained from the semi-quantitative and quantitative histopathological analyses, the exposure of the clam’s digestive gland to BPA with concentrations of 1 and 5 µg/L for 21 days showed significant histopathological alterations compared with the control clams. The multi-biomarker approach used in the current study proved to be a useful tool for assessing the impact of diphenylmethane compounds, such as BPA. Water-borne BPA causes oxidative stress, neurotoxicity, genotoxicity, and deleterious effects on the clam digestive gland; all of these could deteriorate clam performance and health, causing tissue dysfunction.
双酚 A(BPA)是一种塑料添加剂单体,是全球产量最高的化学品之一,被广泛用于食品和饮料容器、奶瓶和纸制品等许多行业。以往的研究表明,双酚 A 对水生生物具有潜在毒性,可导致内分泌紊乱和行为失调。目前的研究工作旨在确定双酚 A 对可食用海蛤 Ruditapes decussatus 的毒性影响,采用了多种生物标志物方法(死亡率、生化研究、彗星测定法检测 DNA 链断裂,以及半定量和定量组织病理学分析的组织病理学检查)。蛤蜊在实验室条件下接触三种浓度的双酚 A(0 "对照"、1 和 5 微克/升),为期 21 天。暴露期结束后,评估双酚 A 对消化腺的影响,因为消化腺是生态毒理学研究中用途广泛且与环境相关的器官。经双酚 A 处理的蛤蜊只有在双酚 A 浓度最高(5 微克/升)时才会死亡(10%)。双酚 A 暴露导致的生化损伤与浓度有关。丙二醛(MDA)和谷胱甘肽(GSH)水平明显升高,而过氧化氢酶(CAT)活性明显降低。我们的研究结果表明,双酚 A 会诱导十日红的神经毒性,乙酰胆碱酯酶(AChE)活性的抑制呈剂量依赖性。此外,随着双酚 A 含量的增加,DNA 损伤也被强烈诱发。此外,双酚 A 处理时消化腺组织的变化也证实了我们的研究结果,这可能会影响蛤蜊的食物吸收能力;这些变化主要包括消化管萎缩和坏死、上皮细胞空泡化、血细胞浸润和管间纤维化。根据半定量和定量组织病理学分析获得的数据,与对照组相比,将双酚 A 暴露于浓度为 1 微克/升和 5 微克/升的双酚 A 21 天后,蛤蜊的消化腺会出现明显的组织病理学改变。本研究中使用的多生物标志物方法被证明是评估双酚 A 等二苯基甲烷化合物影响的有用工具。水载双酚 A 会导致氧化应激、神经毒性、基因毒性以及对蛤蜊消化腺的有害影响;所有这些都会恶化蛤蜊的表现和健康,造成组织功能障碍。
{"title":"Multiple-biomarker approach in the assessment of bisphenol A effect on the grooved carpet clam Ruditapes decussatus (Linnaeus, 1758)","authors":"Ola Mohamed Nour, Salwa A. El-Saidy, Aml Z. Ghoneim","doi":"10.1186/s40850-024-00211-1","DOIUrl":"https://doi.org/10.1186/s40850-024-00211-1","url":null,"abstract":"Bisphenol A (BPA), a plastic additive monomer, is among the most highly produced chemicals worldwide, and is broadly used in many industries, such as food and beverage containers, milk bottles, and paper products. Previous studies demonstrated that BPA has potential toxicity to aquatic organisms, causing endocrine disturbance and behavioural disorders. The current work aimed to determine the toxic impacts of BPA on the edible marine clam Ruditapes decussatus considering a multi-biomarker approach (mortality, biochemical studies, DNA strand breaks using comet assay, and histopathological examinations with semi-quantitative and quantitative histopathological analyses). The clams were exposed under laboratory conditions to three concentrations of BPA (0 “control”, 1, and 5 µg/L) for a period of 21 days. After the exposure period, BPA impacts were assessed in the digestive gland as a versatile and environmentally relevant organ for ecotoxicological studies. In BPA-treated clams, mortality (10%) occurred only at the highest BPA concentration (5 µg/L). Biochemical impairments were detected in a concentration-dependent manner as a consequence of BPA exposure. There were significant increases in malondialdehyde (MDA) and glutathione (GSH) levels, while catalase (CAT) activity was significantly reduced. Our results revealed that BPA induced neurotoxicity in R. decussatus, as evidenced by the inhibition of acetylcholinesterase (AChE) activity in a dose-dependent manner. Furthermore, DNA damage was strongly induced as BPA levels increased. Additionally, our results have been affirmed by alterations in digestive gland tissues at BPA treatments, which consequently can impair the clam’s ability for food absorption; these alterations included mainly atrophic and necrotic digestive tubules, epithelial cell vacuolization, hemocyte infiltration, and intertubular fibrosis. Based on the data obtained from the semi-quantitative and quantitative histopathological analyses, the exposure of the clam’s digestive gland to BPA with concentrations of 1 and 5 µg/L for 21 days showed significant histopathological alterations compared with the control clams. The multi-biomarker approach used in the current study proved to be a useful tool for assessing the impact of diphenylmethane compounds, such as BPA. Water-borne BPA causes oxidative stress, neurotoxicity, genotoxicity, and deleterious effects on the clam digestive gland; all of these could deteriorate clam performance and health, causing tissue dysfunction.","PeriodicalId":48590,"journal":{"name":"BMC Zoology","volume":"73 1","pages":""},"PeriodicalIF":1.6,"publicationDate":"2024-08-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141931664","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Human-De Brazza’s monkey conflict in Kafa Biosphere Reserve, Kafa Zone South West, Ethiopia 埃塞俄比亚西南部卡法区卡法生物圈保护区的人猴冲突
IF 1.6 3区 生物学 Q2 ZOOLOGY Pub Date : 2024-08-12 DOI: 10.1186/s40850-024-00210-2
Melaku Haile, Tsegaye Gadisa, Tariku Mekonnen Gutema
Human-wildlife conflict (HWC) is any interaction between humans and wildlife that arises when wildlife necessities encroach on those of the human population. It affects all areas where animal and peoples cohabit regardless of geography or climatic circumstances; but the burden is great in developing nations. De Brazza’s monkey (DM) (Cercopithecus neglectus) is one of the most unusual species in the group of Old-World monkeys commonly known as guenons. The De Brazza’s monkey is distributed in different parts of African forests from Guinea to Ethiopia. This study was conducted in Kafa Biosphere Reserve, Kafa Zone, South West Ethiopia, to assess the causes of human wildlife conflict in the area. The methods used were, household questionnaire, focus group discussion and direct field observation from June 2022 to May 2023. The study revealed that the major causes of human De Brazza’s monkey conflicts were; habitat destruction 52.9%, (n = 72), human proximity to natural forest, 25.7%, (n = 35) and increasing of its population size 8.1 %, (n = 11). These monkeys’ raids crop usually early in the morning 42.6%, (n = 58), and late evening 29.4%, (n = 40). Maize was the most damaged crop by De Brazza’s monkey followed by coffee. The study also confirmed that guarding was the most common method used to protect crops from crop raiding wildlife in the area. Majority 66.2%, (n= 90) of the informants had negative attitude but 22.1%, (n = 30) had positive attitude towards De Brazza’s monkey conservation. The study discovered that, in contrast to olive baboons and grivet monkeys in the area, De Brazza's monkeys were not previously identified as crop raiders; however, they are currently causing damage to crops, especially maize and coffee crops. This could be due to habitat destruction and human proximity to the forest boundary. Thus, the conflict between humans and De Brazza's monkeys is escalating. As such, we recommended more research on the population status of the monkeys and strategies for coexist in the area.
人类与野生动物冲突(HWC)是指人类与野生动物之间的任何互动,当野生动物的需求侵犯到人类的需求时就会发生。无论地理或气候条件如何,人与动物冲突都会影响到人与动物共处的所有地区;但在发展中国家,人与动物冲突造成的负担非常沉重。德布拉扎猴(DM)(Cercopithecus neglectus)是旧大陆猴类中最不寻常的物种之一,通常被称为 "guenons"。德布拉扎猴分布在从几内亚到埃塞俄比亚的非洲森林的不同地区。这项研究在埃塞俄比亚西南部卡法区的卡法生物圈保护区进行,目的是评估该地区人类与野生动物冲突的原因。采用的方法包括家庭问卷调查、焦点小组讨论以及 2022 年 6 月至 2023 年 5 月期间的直接实地观察。研究显示,人类与德布拉扎猴冲突的主要原因是:栖息地遭到破坏,占 52.9%(72 人);人类接近天然林,占 25.7%(35 人);以及德布拉扎猴的种群数量增加,占 8.1%(11 人)。这些猴子通常在清晨(42.6%,n = 58)和傍晚(29.4%,n = 40)袭击农作物。德布拉扎猴破坏最多的作物是玉米,其次是咖啡。研究还证实,在该地区,保护农作物免受野生动物袭击最常用的方法是看守。66.2%的受访者(90 人)对保护德布拉扎猴持消极态度,22.1%的受访者(30 人)持积极态度。研究发现,与该地区的橄榄狒狒和叼猴相比,德布拉扎猴以前并未被认定为农作物掠夺者;然而,它们目前正在对农作物造成破坏,尤其是玉米和咖啡作物。这可能是由于栖息地遭到破坏以及人类靠近森林边界造成的。因此,人类与德布拉扎猴之间的冲突正在升级。因此,我们建议对该地区的猴子数量状况和共存策略开展更多研究。
{"title":"Human-De Brazza’s monkey conflict in Kafa Biosphere Reserve, Kafa Zone South West, Ethiopia","authors":"Melaku Haile, Tsegaye Gadisa, Tariku Mekonnen Gutema","doi":"10.1186/s40850-024-00210-2","DOIUrl":"https://doi.org/10.1186/s40850-024-00210-2","url":null,"abstract":"Human-wildlife conflict (HWC) is any interaction between humans and wildlife that arises when wildlife necessities encroach on those of the human population. It affects all areas where animal and peoples cohabit regardless of geography or climatic circumstances; but the burden is great in developing nations. De Brazza’s monkey (DM) (Cercopithecus neglectus) is one of the most unusual species in the group of Old-World monkeys commonly known as guenons. The De Brazza’s monkey is distributed in different parts of African forests from Guinea to Ethiopia. This study was conducted in Kafa Biosphere Reserve, Kafa Zone, South West Ethiopia, to assess the causes of human wildlife conflict in the area. The methods used were, household questionnaire, focus group discussion and direct field observation from June 2022 to May 2023. The study revealed that the major causes of human De Brazza’s monkey conflicts were; habitat destruction 52.9%, (n = 72), human proximity to natural forest, 25.7%, (n = 35) and increasing of its population size 8.1 %, (n = 11). These monkeys’ raids crop usually early in the morning 42.6%, (n = 58), and late evening 29.4%, (n = 40). Maize was the most damaged crop by De Brazza’s monkey followed by coffee. The study also confirmed that guarding was the most common method used to protect crops from crop raiding wildlife in the area. Majority 66.2%, (n= 90) of the informants had negative attitude but 22.1%, (n = 30) had positive attitude towards De Brazza’s monkey conservation. The study discovered that, in contrast to olive baboons and grivet monkeys in the area, De Brazza's monkeys were not previously identified as crop raiders; however, they are currently causing damage to crops, especially maize and coffee crops. This could be due to habitat destruction and human proximity to the forest boundary. Thus, the conflict between humans and De Brazza's monkeys is escalating. As such, we recommended more research on the population status of the monkeys and strategies for coexist in the area.","PeriodicalId":48590,"journal":{"name":"BMC Zoology","volume":"31 1","pages":""},"PeriodicalIF":1.6,"publicationDate":"2024-08-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141931665","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Biological aspects of the lingual papillae of the Arab Zebu cattle: a new perspicuity of its chad ecological adaptations 阿拉伯斑马牛舌乳头的生物学方面:其生态适应性的新视角
IF 1.6 3区 生物学 Q2 ZOOLOGY Pub Date : 2024-08-12 DOI: 10.1186/s40850-024-00208-w
Mohamed Abumandour, Seham Haddad, Foad Farrag, Ramadan Kandyel, Karam Roshdy, Diaa Massoud, Eman Kamal Khalil
Our research is the first to explore the ultrastructural features of the lingual papillary system of Arab Zebu cattle, highlighting their Chadian environmental adaptations. There were two types of papillary systems: gustatory (fungiform and circumvallate) and mechanical (filiform, conical, and lentiform). The dorsal surface of the apex and rostral parts of the body had well-developed filiform papillae, whereas the tip’s surface had mucosal folds, tubercles, and few filiform papillae. The torus lingua’s dorsal surface displayed few lentiform papillae, while two conical papillae subtypes and numerous circumvallate papillae were present on its lateral surfaces. A slight median ridge on the dorsal surface of the body had not been described previously. Six filiform papillae subtypes were identified: long and rod-like on the tip; tongue-like and elongated on the lateral area of the apex and body; transient conical and leaf-like on the median line. The accessory processes were: one pair (on long, tongue-like, and transient conical), two pairs (on leaf-like and elongated), and four pairs on the large conical papillae. The two fungiform papillae subtypes were surrounded by a groove and had taste pores (3–5 on the oval and 5–9 on the round papillae). The U-shaped annular bad were observed around the ovoid circumvallate papillae, and the circular bad were observed around the round ones. The circumvallate had taste pores (8–14 on the round’s dorsal and lateral surfaces and 6–10 on the ovoid’s lateral surface). The papillary system’s regional divergence was specialized for its harsh and semi-harsh diet.
我们的研究首次探讨了阿拉伯斑马牛舌乳头系统的超微结构特征,突出了它们对乍得环境的适应性。乳头系统分为两类:味觉乳头系统(菌状乳头系统和环状乳头系统)和机械乳头系统(丝状乳头系统、锥状乳头系统和透镜状乳头系统)。顶端和喙部的背表面有发达的丝状乳头,而顶端的表面则有粘膜皱褶、小丘和少量丝状乳头。舌环的背面显示出很少的透镜状乳突,而其侧面则有两个锥形乳突亚型和许多环状乳突。舌体背侧有一条轻微的中脊,以前从未描述过。确定了六种丝状乳突亚型:顶端长且呈杆状;顶端和体侧区域呈舌状且拉长;中线上呈瞬时锥状和叶状。附属突起有:一对(在长形、舌状和短暂锥形上),两对(在叶状和拉长形上),在大锥形乳突上有四对。两个菌形乳头亚型周围有凹槽,并有味孔(椭圆形乳头上有 3-5 个,圆形乳头上有 5-9 个)。在卵圆形环状乳头周围观察到 U 形环状坏孔,在圆形乳头周围观察到圆形坏孔。环状乳头有味觉孔(圆形乳头的背面和侧面有 8-14 个,卵形乳头的侧面有 6-10 个)。乳头系统的区域性分化是针对其苛刻和半苛刻的食物而专门设计的。
{"title":"Biological aspects of the lingual papillae of the Arab Zebu cattle: a new perspicuity of its chad ecological adaptations","authors":"Mohamed Abumandour, Seham Haddad, Foad Farrag, Ramadan Kandyel, Karam Roshdy, Diaa Massoud, Eman Kamal Khalil","doi":"10.1186/s40850-024-00208-w","DOIUrl":"https://doi.org/10.1186/s40850-024-00208-w","url":null,"abstract":"Our research is the first to explore the ultrastructural features of the lingual papillary system of Arab Zebu cattle, highlighting their Chadian environmental adaptations. There were two types of papillary systems: gustatory (fungiform and circumvallate) and mechanical (filiform, conical, and lentiform). The dorsal surface of the apex and rostral parts of the body had well-developed filiform papillae, whereas the tip’s surface had mucosal folds, tubercles, and few filiform papillae. The torus lingua’s dorsal surface displayed few lentiform papillae, while two conical papillae subtypes and numerous circumvallate papillae were present on its lateral surfaces. A slight median ridge on the dorsal surface of the body had not been described previously. Six filiform papillae subtypes were identified: long and rod-like on the tip; tongue-like and elongated on the lateral area of the apex and body; transient conical and leaf-like on the median line. The accessory processes were: one pair (on long, tongue-like, and transient conical), two pairs (on leaf-like and elongated), and four pairs on the large conical papillae. The two fungiform papillae subtypes were surrounded by a groove and had taste pores (3–5 on the oval and 5–9 on the round papillae). The U-shaped annular bad were observed around the ovoid circumvallate papillae, and the circular bad were observed around the round ones. The circumvallate had taste pores (8–14 on the round’s dorsal and lateral surfaces and 6–10 on the ovoid’s lateral surface). The papillary system’s regional divergence was specialized for its harsh and semi-harsh diet.","PeriodicalId":48590,"journal":{"name":"BMC Zoology","volume":"86 1","pages":""},"PeriodicalIF":1.6,"publicationDate":"2024-08-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141931663","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Diversity, distribution, and relative abundance of medium and large-sized mammals in Chukala Mountain Forest, East Shoa Zone, Oromia, Ethiopia. 埃塞俄比亚奥罗米亚州东肖亚区丘卡拉山林中大型哺乳动物的多样性、分布和相对丰度。
IF 1.4 3区 生物学 Q2 ZOOLOGY Pub Date : 2024-07-24 DOI: 10.1186/s40850-024-00207-x
Nimona Alemu, Tsegaye Gadisa, Tadesse Habtamu, Tolera Kuma

This study investigates the diversity, distribution, and relative abundance of medium and large-sized mammals in the biodiverse Chukala Mountain Forest of East Shoa, Oromia, Ethiopia, during March to August 2020. Three distinct habitat types-Montane forest with grassland (Panthera pardus, Papio anubis), woodland (Lepus fagani), and riverine forest (Procavia capensis)-were surveyed using line transects. Over four months, surveys were conducted bi-monthly, focusing on parameters such as species richness, and population distribution. Analysis revealed twelve mammal species spanning five orders and eight families, with olive baboons (Papio anubis) prevailing as the most abundant species, while leopards (Panthera pardus), bush hares (Lepus fagani), and rock hyraxes (Procavia capensis) were less frequently encountered. Woodland habitats exhibited the highest species richness (H = 1.700), followed by montane forest with grassland (H = 1.156) and riverine forest (H = 1.070). Notably, montane forest with grassland and riverine forest habitats shared similar species compositions across seasons (SI = 1). In conclusion, these findings provide valuable insights into the mammalian diversity and ecology of the Chukala Mountain Forest, highlighting the importance of ongoing conservation efforts in the region. Based on the findings, it is recommended to implement conservation measures focusing on preserving and enhancing the habitats of less common species such as the leopard, bush hare, and rock hyrax. Continual monitoring and research are recommended to track population dynamics and guide conservation initiatives for long-term ecosystem preservation. Overall, this study emphasizes the importance of proactive conservation measures in maintaining the ecological integrity of this vital ecosystem.

本研究调查了 2020 年 3 月至 8 月期间埃塞俄比亚奥罗米亚东肖亚生物多样性丰富的丘卡拉山林中大中型哺乳动物的多样性、分布和相对丰度。采用线状横断面调查了三种不同的栖息地类型--有草原的山地森林(Panthera pardus、Papio anubis)、林地(Lepus fagani)和河岸森林(Procavia capensis)。在四个月的时间里,每两个月进行一次调查,重点是物种丰富度和种群分布等参数。分析结果显示,哺乳动物有 12 种,涵盖 5 目 8 科,其中橄榄狒狒(Papio anubis)是数量最多的物种,而豹(Panthera pardus)、丛林野兔(Lepus fagani)和岩鬣狗(Procavia capensis)则较少出现。林地栖息地的物种丰富度最高(H = 1.700),其次是有草原的山地森林(H = 1.156)和河流森林(H = 1.070)。值得注意的是,山地森林与草原和河流森林栖息地在不同季节的物种组成相似(SI = 1)。总之,这些研究结果为了解楚卡拉山地森林的哺乳动物多样性和生态学提供了宝贵的信息,突出了该地区正在进行的保护工作的重要性。根据研究结果,建议实施保护措施,重点保护和改善豹、丛林兔和岩鬣羚等不常见物种的栖息地。建议进行持续监测和研究,以跟踪种群动态并指导保护措施,从而实现生态系统的长期保护。总之,这项研究强调了积极主动的保护措施对于维护这一重要生态系统生态完整性的重要性。
{"title":"Diversity, distribution, and relative abundance of medium and large-sized mammals in Chukala Mountain Forest, East Shoa Zone, Oromia, Ethiopia.","authors":"Nimona Alemu, Tsegaye Gadisa, Tadesse Habtamu, Tolera Kuma","doi":"10.1186/s40850-024-00207-x","DOIUrl":"10.1186/s40850-024-00207-x","url":null,"abstract":"<p><p>This study investigates the diversity, distribution, and relative abundance of medium and large-sized mammals in the biodiverse Chukala Mountain Forest of East Shoa, Oromia, Ethiopia, during March to August 2020. Three distinct habitat types-Montane forest with grassland (Panthera pardus, Papio anubis), woodland (Lepus fagani), and riverine forest (Procavia capensis)-were surveyed using line transects. Over four months, surveys were conducted bi-monthly, focusing on parameters such as species richness, and population distribution. Analysis revealed twelve mammal species spanning five orders and eight families, with olive baboons (Papio anubis) prevailing as the most abundant species, while leopards (Panthera pardus), bush hares (Lepus fagani), and rock hyraxes (Procavia capensis) were less frequently encountered. Woodland habitats exhibited the highest species richness (H = 1.700), followed by montane forest with grassland (H = 1.156) and riverine forest (H = 1.070). Notably, montane forest with grassland and riverine forest habitats shared similar species compositions across seasons (SI = 1). In conclusion, these findings provide valuable insights into the mammalian diversity and ecology of the Chukala Mountain Forest, highlighting the importance of ongoing conservation efforts in the region. Based on the findings, it is recommended to implement conservation measures focusing on preserving and enhancing the habitats of less common species such as the leopard, bush hare, and rock hyrax. Continual monitoring and research are recommended to track population dynamics and guide conservation initiatives for long-term ecosystem preservation. Overall, this study emphasizes the importance of proactive conservation measures in maintaining the ecological integrity of this vital ecosystem.</p>","PeriodicalId":48590,"journal":{"name":"BMC Zoology","volume":"9 1","pages":"18"},"PeriodicalIF":1.4,"publicationDate":"2024-07-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11267955/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141761801","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Scanning electron microscopy and morphometric analysis of the hair in dromedaries with SEM-EDX in relation to age. 利用扫描电子显微镜和形态计量学分析单峰骆驼毛发与年龄的关系。
IF 1.4 3区 生物学 Q2 ZOOLOGY Pub Date : 2024-07-15 DOI: 10.1186/s40850-024-00204-0
Mohamed A M Alsafy, Samir A A El-Gendy, Amira Derbalah, Ahmed M Rashwan, Seham S Haddad

Background: Hair characterization is critical for determining animal individuality throughout life. This study aimed to assess the morphological features of dromedary camel hair in relation to age.

Materials and methods: Hair samples were obtained from the camel humps of 30 dromedary camels separated into three groups: G1 (n:10) aged one-year, G2 (n:10) aged 3-5 years, and G3 (n:10) at the age of 8-10 years. The hair was examined using light microscopy, SEM, and SEM-EDX.

Results: The Maghrebi camel had varied medulla patterns and structures across the ages. In the G1 group 75% had continuous medulla patterns and amorphous medulla structures, compared to 70% in G2, and 90% in G3. The medulla index increased with age, rising from 0.3 to 0.77%. The shaft width grew in size from G1 to G2, then fell to approximately one-third of the G2 size at G3. The cortex and cuticle widths were also determined by age, and they increased in the G1 compared to G3 camels. The shape of the cuticle scales in G1 camels was wavy, like mountain tops with irregular edges, within G2 camels the scales were particularly long, oval-shaped scales with smooth, wavy borders. The scales of the older G3 camels were quite long and rectangular. SEM-EDX spectra recognized carbon, oxygen, nitrogen, sulfur, calcium, aluminum, silicon, and potassium at the medulla and cortex. Sulfur levels were highest in the G2 samples but lowest in the G1 samples.

Conclusion: The dromedary camel's hair structure and mineral content, particularly carbon and nitrogen, differed as camels aged.

背景:毛发特征对于确定动物一生的个体特征至关重要。本研究旨在评估单峰骆驼毛发的形态特征与年龄的关系。材料与方法:从 30 只单峰骆驼的驼峰上采集毛发样本,分成三组:G1 组(10 头)年龄为 1 岁,G2 组(10 头)年龄为 3-5 岁,G3 组(10 头)年龄为 8-10 岁。使用光学显微镜、扫描电镜和扫描电镜-电子显微镜对毛发进行检测:结果:马格里布骆驼不同年龄段的髓质形态和结构各不相同。在 G1 组中,75% 的骆驼有连续的髓质图案和无定形的髓质结构,而在 G2 组中,这一比例为 70%,在 G3 组中,这一比例为 90%。髓质指数随着年龄的增长而增加,从 0.3% 增加到 0.77%。轴的宽度从 G1 到 G2 逐渐增大,然后在 G3 时减小到 G2 的大约三分之一。皮层和角质层的宽度也由年龄决定,与 G3 骆驼相比,G1 骆驼的皮层和角质层宽度有所增加。G1 骆驼的角质层鳞片形状呈波浪状,就像山顶一样,边缘不规则;G2 骆驼的鳞片特别长,呈椭圆形,边缘光滑,呈波浪状。较老的 G3 骆驼的鳞片相当长,呈长方形。SEM-EDX 光谱显示,髓质和皮质中含有碳、氧、氮、硫、钙、铝、硅和钾。G2 样品的硫含量最高,而 G1 样品的硫含量最低:结论:随着骆驼年龄的增长,其毛发结构和矿物质含量,尤其是碳和氮的含量会发生变化。
{"title":"Scanning electron microscopy and morphometric analysis of the hair in dromedaries with SEM-EDX in relation to age.","authors":"Mohamed A M Alsafy, Samir A A El-Gendy, Amira Derbalah, Ahmed M Rashwan, Seham S Haddad","doi":"10.1186/s40850-024-00204-0","DOIUrl":"10.1186/s40850-024-00204-0","url":null,"abstract":"<p><strong>Background: </strong>Hair characterization is critical for determining animal individuality throughout life. This study aimed to assess the morphological features of dromedary camel hair in relation to age.</p><p><strong>Materials and methods: </strong>Hair samples were obtained from the camel humps of 30 dromedary camels separated into three groups: G1 (n:10) aged one-year, G2 (n:10) aged 3-5 years, and G3 (n:10) at the age of 8-10 years. The hair was examined using light microscopy, SEM, and SEM-EDX.</p><p><strong>Results: </strong>The Maghrebi camel had varied medulla patterns and structures across the ages. In the G1 group 75% had continuous medulla patterns and amorphous medulla structures, compared to 70% in G2, and 90% in G3. The medulla index increased with age, rising from 0.3 to 0.77%. The shaft width grew in size from G1 to G2, then fell to approximately one-third of the G2 size at G3. The cortex and cuticle widths were also determined by age, and they increased in the G1 compared to G3 camels. The shape of the cuticle scales in G1 camels was wavy, like mountain tops with irregular edges, within G2 camels the scales were particularly long, oval-shaped scales with smooth, wavy borders. The scales of the older G3 camels were quite long and rectangular. SEM-EDX spectra recognized carbon, oxygen, nitrogen, sulfur, calcium, aluminum, silicon, and potassium at the medulla and cortex. Sulfur levels were highest in the G2 samples but lowest in the G1 samples.</p><p><strong>Conclusion: </strong>The dromedary camel's hair structure and mineral content, particularly carbon and nitrogen, differed as camels aged.</p>","PeriodicalId":48590,"journal":{"name":"BMC Zoology","volume":"9 1","pages":"17"},"PeriodicalIF":1.4,"publicationDate":"2024-07-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11247770/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141621205","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Dynamic home range of the grey-sided vole Craseomys rufocanus: a pilot study. 灰面田鼠 Craseomys rufocanus 的动态家园范围:一项试点研究。
IF 1.4 3区 生物学 Q2 ZOOLOGY Pub Date : 2024-07-15 DOI: 10.1186/s40850-024-00209-9
Karl Frafjord

Background: Knowledge about home range size is vital to understand social systems and population dynamics of small mammals, as well as dispersal and a species' landscape use. Home ranges have been mapped for some species of voles (subfamily Microtinae) but remain virtually unknown for many species, including the grey-sided vole Craseomys rufocanus.

Results: A small pilot study was carried out in an inland valley of northern Norway, where six adult C. rufocanus were radio-tracked with one male and one female in each of the summers 2021-2023. Despite the small sample size, a large variation in home range size was found; males 2 294 - 36 887 m2 and females 1 728-7 392 m2 (100% MCP). Three of the voles tracked over a prolonged period of time showed a dynamic use and shifting of the range. Home range size and use was mostly related to reproduction. The male with the smallest range had probably not yet become reproductively active, whereas the male with the largest range was searching for females at a time when vole density was very low. The third male reduced his range when the reproductive season ended. For females the most important limitations were food, shelter and dependent young, those with young needed to return frequently and spend more time at the nest site. When the reproductive season ended, one female increased her range, perhaps exploring sites to overwinter.

Conclusions: Home range use in this population appears to be more dynamic than has previously been reported for C. rufocanus. The large ranges of males most likely resulted from the search of reproductively active females, outside of the reproductive season male ranges approximated female ranges. Female ranges most likely were limited by the need to feed close to their nest with dependent young, being able to roam more freely when reproduction ended.

背景:了解家园范围的大小对于了解小型哺乳动物的社会系统和种群动态以及物种的扩散和景观利用至关重要。一些田鼠(微田鼠亚科)物种的家园范围已经绘制完成,但包括灰面田鼠(Craseomys rufocanus)在内的许多物种的家园范围几乎仍然未知:我们在挪威北部的一个内陆山谷开展了一项小型试点研究,在2021-2023年的每个夏天都对六只成年灰面田鼠(Craseomys rufocanus)进行了无线电追踪,其中一雄一雌。尽管样本量较小,但发现田鼠的活动范围差异很大:雄性为2 294 - 36 887平方米,雌性为1 728 - 7 392平方米(100% MCP)。对其中三只田鼠的长期跟踪表明,它们对家域的使用和转移是动态的。家园范围的大小和使用主要与繁殖有关。活动范围最小的雄性田鼠可能还没有开始活跃地繁殖,而活动范围最大的雄性田鼠则在田鼠密度很低的时候寻找雌性田鼠。第三只雄鼠在繁殖季节结束后缩小了活动范围。对雌性田鼠来说,最重要的限制因素是食物、栖息地和需要抚养的幼鼠。繁殖季节结束后,一只雌鸟增加了活动范围,可能是在寻找越冬地点:该种群对家域的利用似乎比之前报道的 C. rufocanus 更有活力。雄性的大范围活动很可能是由于寻找生殖活跃的雌性,在生殖季节以外,雄性的活动范围与雌性的活动范围接近。雌性的活动范围很可能受限于需要在巢穴附近觅食并抚养幼鸟,当繁殖结束时,雌性可以更自由地漫游。
{"title":"Dynamic home range of the grey-sided vole Craseomys rufocanus: a pilot study.","authors":"Karl Frafjord","doi":"10.1186/s40850-024-00209-9","DOIUrl":"10.1186/s40850-024-00209-9","url":null,"abstract":"<p><strong>Background: </strong>Knowledge about home range size is vital to understand social systems and population dynamics of small mammals, as well as dispersal and a species' landscape use. Home ranges have been mapped for some species of voles (subfamily Microtinae) but remain virtually unknown for many species, including the grey-sided vole Craseomys rufocanus.</p><p><strong>Results: </strong>A small pilot study was carried out in an inland valley of northern Norway, where six adult C. rufocanus were radio-tracked with one male and one female in each of the summers 2021-2023. Despite the small sample size, a large variation in home range size was found; males 2 294 - 36 887 m<sup>2</sup> and females 1 728-7 392 m<sup>2</sup> (100% MCP). Three of the voles tracked over a prolonged period of time showed a dynamic use and shifting of the range. Home range size and use was mostly related to reproduction. The male with the smallest range had probably not yet become reproductively active, whereas the male with the largest range was searching for females at a time when vole density was very low. The third male reduced his range when the reproductive season ended. For females the most important limitations were food, shelter and dependent young, those with young needed to return frequently and spend more time at the nest site. When the reproductive season ended, one female increased her range, perhaps exploring sites to overwinter.</p><p><strong>Conclusions: </strong>Home range use in this population appears to be more dynamic than has previously been reported for C. rufocanus. The large ranges of males most likely resulted from the search of reproductively active females, outside of the reproductive season male ranges approximated female ranges. Female ranges most likely were limited by the need to feed close to their nest with dependent young, being able to roam more freely when reproduction ended.</p>","PeriodicalId":48590,"journal":{"name":"BMC Zoology","volume":"9 1","pages":"16"},"PeriodicalIF":1.4,"publicationDate":"2024-07-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11247767/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141621204","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Integrated transcriptome and metabolome analysis reveals the molecular responses of Pardosa pseudoannulata to hypoxic environments. 转录组和代谢组的综合分析揭示了拟南芥对缺氧环境的分子反应。
IF 1.4 3区 生物学 Q2 ZOOLOGY Pub Date : 2024-07-04 DOI: 10.1186/s40850-024-00206-y
Jinjin Li, Yun-E Tang, Bo Lv, Juan Wang, Zhi Wang, Qisheng Song

Terrestrial organisms are likely to face hypoxic stress during natural disasters such as floods or landslides, which can lead to inevitable hypoxic conditions for those commonly residing within soil. Pardosa pseudoannulata often inhabits soil crevices and has been extensively studied, yet research on its response to hypoxic stress remains unclear. Therefore, we investigated the adaptive strategies of Pardosa pseudoannulata under hypoxic stress using metabolomics and transcriptomics approaches. The results indicated that under hypoxic stress, metabolites related to energy and antioxidants such as ATP, D-glucose 6-phosphate, flavin adenine dinucleotide (FAD), and reduced L-glutathione were significantly differentially expressed. Pathways such as the citric acid (TCA) cycle and oxidative phosphorylation were significantly enriched. Transcriptome analysis and related assessments also revealed a significant enrichment of pathways associated with energy metabolism, suggesting that Pardosa pseudoannulata primarily copes with hypoxic environments by modulating energy metabolism and antioxidant-related substances.

在发生洪水或山体滑坡等自然灾害时,陆地生物可能会面临缺氧压力,这可能导致通常栖息在土壤中的生物不可避免地处于缺氧状态。伪尾柱虫经常栖息在土壤缝隙中,人们对其进行了广泛的研究,但有关其对缺氧应激反应的研究仍不清楚。因此,我们利用代谢组学和转录组学方法研究了低氧胁迫下稗草的适应策略。结果表明,在缺氧胁迫下,与能量和抗氧化剂有关的代谢物,如ATP、6-磷酸二葡萄糖、黄素腺嘌呤二核苷酸(FAD)和还原型L-谷胱甘肽等,都有显著的差异表达。柠檬酸(TCA)循环和氧化磷酸化等途径的表达量明显增加。转录组分析和相关评估还发现,与能量代谢相关的途径也明显增加,这表明稗草主要通过调节能量代谢和抗氧化相关物质来应对缺氧环境。
{"title":"Integrated transcriptome and metabolome analysis reveals the molecular responses of Pardosa pseudoannulata to hypoxic environments.","authors":"Jinjin Li, Yun-E Tang, Bo Lv, Juan Wang, Zhi Wang, Qisheng Song","doi":"10.1186/s40850-024-00206-y","DOIUrl":"10.1186/s40850-024-00206-y","url":null,"abstract":"<p><p>Terrestrial organisms are likely to face hypoxic stress during natural disasters such as floods or landslides, which can lead to inevitable hypoxic conditions for those commonly residing within soil. Pardosa pseudoannulata often inhabits soil crevices and has been extensively studied, yet research on its response to hypoxic stress remains unclear. Therefore, we investigated the adaptive strategies of Pardosa pseudoannulata under hypoxic stress using metabolomics and transcriptomics approaches. The results indicated that under hypoxic stress, metabolites related to energy and antioxidants such as ATP, D-glucose 6-phosphate, flavin adenine dinucleotide (FAD), and reduced L-glutathione were significantly differentially expressed. Pathways such as the citric acid (TCA) cycle and oxidative phosphorylation were significantly enriched. Transcriptome analysis and related assessments also revealed a significant enrichment of pathways associated with energy metabolism, suggesting that Pardosa pseudoannulata primarily copes with hypoxic environments by modulating energy metabolism and antioxidant-related substances.</p>","PeriodicalId":48590,"journal":{"name":"BMC Zoology","volume":"9 1","pages":"15"},"PeriodicalIF":1.4,"publicationDate":"2024-07-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11225295/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141535726","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
From virtually extinct to superabundant in 35 years: establishment, population growth and shifts in management focus of the Swedish wild boar (Sus scrofa) population. 瑞典野猪(Sus scrofa)种群的建立、种群增长和管理重点的转移。
IF 1.4 3区 生物学 Q2 ZOOLOGY Pub Date : 2024-07-01 DOI: 10.1186/s40850-024-00202-2
Göran Bergqvist, Jonas Kindberg, Bodil Elmhagen

Background: The wild boar (Sus scrofa) was extinct in Sweden when a few animals established in the 1970s. Over the past 35 years, the species has made a substantial comeback. In this paper, we analyse wild boar population growth using three indices of population size. We also map the legislative decisions and research prompted by the expanding population. We discuss to what extent, in the eyes of the state, the view of wild boar and the management focus has shifted over time, from a perceived pest (eradication) to scarce (conservation), overabundant (reduction/control) or somewhere in between (sustainable management).

Results: Wild boar harvest started in the early 1990s with a few hundred animals annually and peaked at 161,000 in 2020/2021. The distribution now comprises most of southern Sweden. Analyses of harvest and traffic accidents involving wild boar showed that the population grew exponentially until 2010/2011, after which the increase levelled off. Thus, logistic growth models showed the best fit for the full study period. We recorded 38 legislative decisions or commissions to government agencies regarding wild boar. The first decision in 1981 was to eradicate the free-ranging population. In 1987 however, the parliament decided that wild boar is native to Sweden and should be allowed in restricted extent. Later decisions mainly concerned hunting regulations and hunting methods as direct means to increase harvest and regulate the population. Another topic, increasing in importance over time, was to facilitate the use of wild boar meat to indirectly stimulate harvest. A local outbreak of African swine fever in 2023 necessitated a stamping out strategy in the affected area. We found 44 scientific papers regarding the present free-ranging population. Topics include movements and feeding patterns, hunting, reproduction, and population development.

Conclusions: The state historically regarded wild boar as a pest to be eradicated. This changed with the decision that wild boar should be allowed in restricted extent, suggesting a conservation approach. In response to population growth, the focus shifted to means facilitating sustainable management and, lately, reducing growth. The story of wild boar in Sweden illustrates attempts to mitigate conflicts and balance interests in wildlife management.

背景:野猪(Sus scrofa)曾于 20 世纪 70 年代在瑞典灭绝,当时仅有几头野猪存活。在过去的 35 年中,该物种已大幅恢复。在本文中,我们使用三种种群数量指数分析了野猪的种群增长情况。我们还描绘了因野猪种群扩大而产生的立法决策和研究。我们讨论了在国家眼中,野猪的看法和管理重点随着时间的推移在多大程度上发生了转变,从被视为害虫(根除)到稀缺(保护)、过剩(减少/控制)或介于两者之间(可持续管理):野猪的捕猎始于 20 世纪 90 年代初,当时每年只有几百头,到 2020/2021 年达到 161,000 头的峰值。目前,野猪分布在瑞典南部的大部分地区。对野猪收获量和涉及野猪的交通事故的分析表明,野猪数量在 2010/2011 年之前呈指数增长,之后增长趋于平稳。因此,逻辑增长模型最适合整个研究期间。我们记录了 38 项有关野猪的立法决定或政府机构委托。1981 年的第一个决定是消灭野猪的散养数量。但在 1987 年,议会决定野猪是瑞典的本土动物,应允许在一定范围内饲养。后来的决定主要涉及狩猎法规和狩猎方法,以此作为增加收获量和调节野猪数量的直接手段。随着时间的推移,另一个越来越重要的议题是促进野猪肉的使用,以间接刺激野猪的捕获量。2023 年,当地爆发了非洲猪瘟,因此有必要在疫区采取扑灭策略。我们发现 44 篇科学论文涉及目前的散养种群。主题包括野猪的活动和进食模式、狩猎、繁殖和种群发展:国家历来将野猪视为需要消灭的害虫。随着允许野猪在一定范围内活动的决定,这一观点发生了改变,提出了一种保护方法。为了应对野猪数量的增长,重点转移到促进可持续管理的手段上,最近又转移到减少野猪数量的增长上。瑞典野猪的故事说明了在野生动物管理中缓解冲突和平衡利益的尝试。
{"title":"From virtually extinct to superabundant in 35 years: establishment, population growth and shifts in management focus of the Swedish wild boar (Sus scrofa) population.","authors":"Göran Bergqvist, Jonas Kindberg, Bodil Elmhagen","doi":"10.1186/s40850-024-00202-2","DOIUrl":"10.1186/s40850-024-00202-2","url":null,"abstract":"<p><strong>Background: </strong>The wild boar (Sus scrofa) was extinct in Sweden when a few animals established in the 1970s. Over the past 35 years, the species has made a substantial comeback. In this paper, we analyse wild boar population growth using three indices of population size. We also map the legislative decisions and research prompted by the expanding population. We discuss to what extent, in the eyes of the state, the view of wild boar and the management focus has shifted over time, from a perceived pest (eradication) to scarce (conservation), overabundant (reduction/control) or somewhere in between (sustainable management).</p><p><strong>Results: </strong>Wild boar harvest started in the early 1990s with a few hundred animals annually and peaked at 161,000 in 2020/2021. The distribution now comprises most of southern Sweden. Analyses of harvest and traffic accidents involving wild boar showed that the population grew exponentially until 2010/2011, after which the increase levelled off. Thus, logistic growth models showed the best fit for the full study period. We recorded 38 legislative decisions or commissions to government agencies regarding wild boar. The first decision in 1981 was to eradicate the free-ranging population. In 1987 however, the parliament decided that wild boar is native to Sweden and should be allowed in restricted extent. Later decisions mainly concerned hunting regulations and hunting methods as direct means to increase harvest and regulate the population. Another topic, increasing in importance over time, was to facilitate the use of wild boar meat to indirectly stimulate harvest. A local outbreak of African swine fever in 2023 necessitated a stamping out strategy in the affected area. We found 44 scientific papers regarding the present free-ranging population. Topics include movements and feeding patterns, hunting, reproduction, and population development.</p><p><strong>Conclusions: </strong>The state historically regarded wild boar as a pest to be eradicated. This changed with the decision that wild boar should be allowed in restricted extent, suggesting a conservation approach. In response to population growth, the focus shifted to means facilitating sustainable management and, lately, reducing growth. The story of wild boar in Sweden illustrates attempts to mitigate conflicts and balance interests in wildlife management.</p>","PeriodicalId":48590,"journal":{"name":"BMC Zoology","volume":"9 1","pages":"14"},"PeriodicalIF":1.4,"publicationDate":"2024-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11218266/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141477721","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Null models confirm nest site fidelity by male smallmouth bass, Micropterus dolomieu. 无效模型证实雄性小口鲈鱼(Micropterus dolomieu)对巢穴的忠诚度。
IF 1.4 3区 生物学 Q2 ZOOLOGY Pub Date : 2024-06-27 DOI: 10.1186/s40850-024-00205-z
Daniel D Wiegmann, Kelly L Weinersmith, Jeffrey R Baylis, Steven P Newman, Lisa M Angeloni
<p><strong>Background: </strong>Many animals appear to preferentially renest in proximity to a site they previously occupied. Evidence of nest fidelity is often inferred from a right skewed distribution of distances between the nests of individuals that breed in two consecutive reproduction episodes, where many individuals nest some arbitrarily close distance to their prior nest and others, in the extended right tail of the distribution, nest far from the nest they previously occupied. Because right skewed distributions of inter-nest distances can arise even when individuals choose nest locations randomly, however, such inferences are prone to error. The importance of null models-used to generate patterns of individual inter-nest distances by processes that do not involve site attachment-for inferences about site fidelity has been known for decades but is still often unappreciated or ignored.</p><p><strong>Methods: </strong>The right skewed distributions of inter-nest distances observed in two earlier studies of male smallmouth bass (Micropterus dolomieu) suggest prima facie that males exhibit nest site fidelity between annual reproduction episodes, but patterns of inter-nest distances have yet to be compared to an adequate null model. Here, we evaluate the nest site fidelity of marked male M. dolomieu in a decade-long dataset, where we apply a randomization procedure based on the rencontre probability problem to generate null models. Eight observed distributions of individual, annual inter-nest distances are compared to a year-specific null model to determine whether random processes are sufficient to explain the observed distributions of inter-nest distances.</p><p><strong>Results: </strong>Through contrasts between observed annual inter-nest distances and results derived from null models that imposed realistic constraints on behavior, we show that some males were undoubtedly nest-site faithful. To reinforce the utility of null models and to make these kinds of models more accessible, we also provide a supplemental tutorial. The tutorial illustrates how random site choices, subject to common ecological and behavioral constraints, and even how distance is measured, can produce patterns of inter-nest distances that falsely imply nest site fidelity, or a lack of fidelity. The R code needed to reproduce these null models is included. The inference errors evident in our examples generalize to other forms of site fidelity, such as the apparent patch fidelity of certain sea bird foragers.</p><p><strong>Conclusions: </strong>The comparisons of observed distributions of inter-nest distances with those generated by null models imply that, as suggested in prior studies, male M. dolomieu indeed exhibit annual nest site fidelity. Procedures like those we apply are necessary first steps in analyses when distributions of distances between the nests of individuals in consecutive reproduction episodes are used to infer nest-site fidelity. Why male M. dolomieu a
背景:许多动物似乎偏好在其先前占据的地点附近重新筑巢。巢忠诚度的证据通常是从连续两次繁殖中繁殖个体的巢间距离的右偏分布推断出来的,在这种分布中,许多个体的巢与它们先前的巢任意地保持着很近的距离,而在分布的右延长尾部,另一些个体的巢与它们先前占据的巢相距甚远。然而,由于即使个体随机选择筑巢地点,巢间距离的右倾斜分布也可能出现,因此这种推断很容易出错。数十年来,人们一直知道无效模型的重要性,即通过不涉及筑巢地点的附着过程产生个体巢间距的模式,从而推断筑巢地点的忠诚度,但这一重要性仍常常不被重视或被忽视:方法:在早期对雄性小口鲈鱼(Micropterus dolomieu)的两项研究中观察到的巢间距离右斜分布初步表明,雄性小口鲈鱼在每年的繁殖周期之间表现出对巢址的忠诚,但是巢间距离的模式尚未与适当的无效模型进行比较。在此,我们在一个长达十年的数据集中评估了有标记的雄性多罗米欧对巢址的忠实性。我们将观测到的八个个体每年的巢间距分布与特定年份的空模型进行比较,以确定随机过程是否足以解释观测到的巢间距分布:通过观察到的年巢间距离与对行为施加现实约束的空模型得出的结果之间的对比,我们发现一些雄鸟无疑是忠实于巢址的。为了加强空模型的实用性,并使这类模型更易于理解,我们还提供了一个补充教程。该教程说明了随机巢址选择如何受到常见的生态和行为约束,甚至如何测量距离,从而产生巢间距离模式,错误地暗示巢址忠诚或缺乏忠诚。文中包含了重现这些无效模型所需的 R 代码。我们的例子中明显的推断错误也适用于其他形式的巢址忠诚,例如某些海鸟觅食者明显的斑块忠诚:结论:观察到的巢间距离分布与空模型产生的巢间距离分布的比较表明,正如先前的研究中提出的那样,雄性多罗米欧确实表现出每年对巢址的忠实性。当利用连续繁殖期个体巢间距离的分布来推断巢址忠诚度时,我们所采用的程序是分析的第一步。雄性多罗米乌为什么会对巢址忠实,这个问题还有待回答。
{"title":"Null models confirm nest site fidelity by male smallmouth bass, Micropterus dolomieu.","authors":"Daniel D Wiegmann, Kelly L Weinersmith, Jeffrey R Baylis, Steven P Newman, Lisa M Angeloni","doi":"10.1186/s40850-024-00205-z","DOIUrl":"10.1186/s40850-024-00205-z","url":null,"abstract":"&lt;p&gt;&lt;strong&gt;Background: &lt;/strong&gt;Many animals appear to preferentially renest in proximity to a site they previously occupied. Evidence of nest fidelity is often inferred from a right skewed distribution of distances between the nests of individuals that breed in two consecutive reproduction episodes, where many individuals nest some arbitrarily close distance to their prior nest and others, in the extended right tail of the distribution, nest far from the nest they previously occupied. Because right skewed distributions of inter-nest distances can arise even when individuals choose nest locations randomly, however, such inferences are prone to error. The importance of null models-used to generate patterns of individual inter-nest distances by processes that do not involve site attachment-for inferences about site fidelity has been known for decades but is still often unappreciated or ignored.&lt;/p&gt;&lt;p&gt;&lt;strong&gt;Methods: &lt;/strong&gt;The right skewed distributions of inter-nest distances observed in two earlier studies of male smallmouth bass (Micropterus dolomieu) suggest prima facie that males exhibit nest site fidelity between annual reproduction episodes, but patterns of inter-nest distances have yet to be compared to an adequate null model. Here, we evaluate the nest site fidelity of marked male M. dolomieu in a decade-long dataset, where we apply a randomization procedure based on the rencontre probability problem to generate null models. Eight observed distributions of individual, annual inter-nest distances are compared to a year-specific null model to determine whether random processes are sufficient to explain the observed distributions of inter-nest distances.&lt;/p&gt;&lt;p&gt;&lt;strong&gt;Results: &lt;/strong&gt;Through contrasts between observed annual inter-nest distances and results derived from null models that imposed realistic constraints on behavior, we show that some males were undoubtedly nest-site faithful. To reinforce the utility of null models and to make these kinds of models more accessible, we also provide a supplemental tutorial. The tutorial illustrates how random site choices, subject to common ecological and behavioral constraints, and even how distance is measured, can produce patterns of inter-nest distances that falsely imply nest site fidelity, or a lack of fidelity. The R code needed to reproduce these null models is included. The inference errors evident in our examples generalize to other forms of site fidelity, such as the apparent patch fidelity of certain sea bird foragers.&lt;/p&gt;&lt;p&gt;&lt;strong&gt;Conclusions: &lt;/strong&gt;The comparisons of observed distributions of inter-nest distances with those generated by null models imply that, as suggested in prior studies, male M. dolomieu indeed exhibit annual nest site fidelity. Procedures like those we apply are necessary first steps in analyses when distributions of distances between the nests of individuals in consecutive reproduction episodes are used to infer nest-site fidelity. Why male M. dolomieu a","PeriodicalId":48590,"journal":{"name":"BMC Zoology","volume":"9 1","pages":"13"},"PeriodicalIF":1.4,"publicationDate":"2024-06-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11210175/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141460088","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Integrating phylogenetic, phylogeographic, and morphometric analyses to reveal cryptic lineages within the genus Asaccus (Reptilia: Squamata: Phyllodactylidae) in Iran. 综合系统发生学、系统地理学和形态计量学分析,揭示伊朗 Asaccus 属(爬行纲:有鳞目:Phyllodactylidae)中的隐性世系。
IF 1.4 3区 生物学 Q2 ZOOLOGY Pub Date : 2024-06-26 DOI: 10.1186/s40850-024-00203-1
Kamran Kamali, Masoud Nazarizadeh, Faezeh Fatemizadeh, Saeed Salmabadi, Chih-Ming Hung, Mohammad Kaboli

The Middle Eastern endemic genus Asaccus comprises Southwest Asian leaf-toed geckos. To date, this genus includes 19 species of leaf-toed geckos (seven in Arabia and 12 in the Zagros Mountains). Despite a recent study on the taxonomy and phylogeny of Asaccus species in Iran, controversies still remain surrounding the phylogeny and phylogeography of the genus. Here, we used an integrative approach to determine the phylogeny and phylogeography of Asaccus species using two mitochondrial genes (12 S and Cyt b), and one nuclear gene (c-mos). Our results uncovered 22 distinct lineages, demonstrating a significant cryptic diversity that challenges the current morphological classifications of these species. Phylogenetic analyses reinforce the monophyly of the Asaccus group, positioning A. montanus as a basal lineage, which supports a deep evolutionary divergence dating back to the Late Oligocene, approximately 27.94 million years ago. This genetic diversity also highlights the impact of historical climatic and geographical changes on species diversification. The findings advocate for an integrative approach combining both molecular and morphological data to resolve species identities accurately, thereby enhancing conservation strategies to protect these genetically distinct lineages.

中东特有属Asaccus由西南亚叶趾壁虎组成。迄今为止,该属包括 19 种叶趾壁虎(7 种在阿拉伯,12 种在扎格罗斯山脉)。尽管最近对伊朗Asaccus物种的分类和系统发育进行了研究,但围绕该属的系统发育和系统地理学仍存在争议。在此,我们采用综合方法,利用两个线粒体基因(12 S 和 Cyt b)和一个核基因(c-mos)确定了 Asaccus 的系统发育和系统地理学。我们的研究结果发现了 22 个不同的品系,显示了显著的隐蔽多样性,对这些物种目前的形态分类提出了挑战。系统发育分析加强了Asaccus类群的单系性,将A. montanus定位为基系,这支持了可追溯到晚渐新世(约2794万年前)的深度进化分化。这种遗传多样性还凸显了历史上气候和地理变化对物种多样化的影响。研究结果主张采用综合方法,结合分子和形态学数据,准确地确定物种身份,从而加强保护策略,保护这些基因上截然不同的品系。
{"title":"Integrating phylogenetic, phylogeographic, and morphometric analyses to reveal cryptic lineages within the genus Asaccus (Reptilia: Squamata: Phyllodactylidae) in Iran.","authors":"Kamran Kamali, Masoud Nazarizadeh, Faezeh Fatemizadeh, Saeed Salmabadi, Chih-Ming Hung, Mohammad Kaboli","doi":"10.1186/s40850-024-00203-1","DOIUrl":"10.1186/s40850-024-00203-1","url":null,"abstract":"<p><p>The Middle Eastern endemic genus Asaccus comprises Southwest Asian leaf-toed geckos. To date, this genus includes 19 species of leaf-toed geckos (seven in Arabia and 12 in the Zagros Mountains). Despite a recent study on the taxonomy and phylogeny of Asaccus species in Iran, controversies still remain surrounding the phylogeny and phylogeography of the genus. Here, we used an integrative approach to determine the phylogeny and phylogeography of Asaccus species using two mitochondrial genes (12 S and Cyt b), and one nuclear gene (c-mos). Our results uncovered 22 distinct lineages, demonstrating a significant cryptic diversity that challenges the current morphological classifications of these species. Phylogenetic analyses reinforce the monophyly of the Asaccus group, positioning A. montanus as a basal lineage, which supports a deep evolutionary divergence dating back to the Late Oligocene, approximately 27.94 million years ago. This genetic diversity also highlights the impact of historical climatic and geographical changes on species diversification. The findings advocate for an integrative approach combining both molecular and morphological data to resolve species identities accurately, thereby enhancing conservation strategies to protect these genetically distinct lineages.</p>","PeriodicalId":48590,"journal":{"name":"BMC Zoology","volume":"9 1","pages":"12"},"PeriodicalIF":1.4,"publicationDate":"2024-06-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11202258/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141460087","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
BMC Zoology
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1