Biology-Basel最新文献

Understanding how plants respond to water limitation is increasingly important under accelerating climate change. Lycoris aurea, a widely distributed ornamental and medicinal bulbous plant, frequently inhabits environments with fluctuating soil moisture, yet its molecular drought-response mechanisms remain largely unexplored. In this study, we investigated L. aurea growing under field-based, in situ soil moisture regimes, comparing low (~20% soil water content) and high (~40% soil water content) conditions. We combined soil property assessments with high-resolution transcriptomic and untargeted metabolomic profiling to characterize the adaptive responses of bulb tissues under contrasting soil water conditions. Although total nitrogen, phosphorus, and potassium levels were comparable across treatments, soil moisture, representing the primary contrasting field condition, and soil pH, a correlated environmental factor, were significantly associated with variation in gene expression and metabolite accumulation (p < 0.05, n = 3). Transcriptome analyses identified a total of 1034 differentially expressed genes enriched in pathways related to amino acid metabolism, cuticle formation, cell wall modification, and osmotic adjustment. Metabolomic analysis identified a total of 1867 differentially expressed metabolites belonging to carboxylic acids and prenol lipids, showing alterations involved in amino acids, lipids, phenolic acids, and alkaloids associated with osmoprotection, membrane stabilization, and structural reinforcement under low soil moisture. Pathway-based integration analysis highlighted four core pathways, including "alanine, aspartate and glutamate metabolism" (p = 0.00371) and "cutin, suberine and wax biosynthesis" (p = 0.00873), as central hubs linking transcriptional regulation with metabolic reconfiguration. Gene-metabolite-soil correlation networks further demonstrated that drought adaptation arises from tightly coordinated biochemical and structural adjustments rather than shifts in nutrient acquisition. Together, this species-specific study provides a comprehensive multi-omics framework for understanding drought tolerance in L. aurea, reveals key molecular targets associated with plant resilience, and offers potential targets and insights for the conservation of drought-resilient Lycoris cultivars.

The Maternal Embryonic Leucine Zipper Kinase (MELK) gene is a member of the Snf1/AMPK serine/threonine kinase family. MELK has recently attracted considerable interest in cancer biology due to its aberrant overexpression in various malignancies, including glioma, breast, lung, colorectal, gastric, and hematological cancers. It has been shown that higher MELK levels are often correlated with unfavorable prognosis, aggressive tumor manifestations, resistance to treatment, and stem-like tumor morphologies. In this review we aim to summarize the current understanding of MELK biology, including its functions in cell cycle regulation, apoptosis, oncogenic signaling pathways, and tumor stemness. We also discuss the therapeutic potential, limitations, and controversy of MELK inhibitors, and implications in cancer diagnosis and treatment. MELK may not be a universal driver oncogene; nonetheless, it is consistently linked to aggressive disease, underscoring its potential as a prognostic biomarker and a candidate for therapeutic co-targeting in combination treatments.

Armillaria mellea (A. mellea) serves as a crucial nutritional source for Gastrodia elata (GE) growth, and its origin directly influences the GE quality and yield. This study analyzed GE symbiotic with A. mellea from different sources using metabolomics and transcriptomics. Results demonstrated that Group A exhibited significant differences in metabolites and gene expression compared to other groups. Group A showed significantly higher accumulation of active components like gastrodin and p-hydroxybenzyl alcohol than others, but its yield was lower than Group B. Metabolomic analysis identified 2418 metabolites, while transcriptomic sequencing produced 964,110,904 clean reads, with 14,637 annotated transcripts. KEGG analysis revealed that Group A's DEGs and DEMs were co-enriched in three key pathways, including flavonoid biosynthesis, phenylpropanoid biosynthesis, and plant hormone signal transduction, such as the positive regulatory roles of key genes (CHS, 4CL, MYC2) on metabolites such as hesperetin, ferulate, and jasmonic acid, respectively. The coordinated upregulation of gene-metabolite interactions in Group A GE may be closely related to the accumulation of major active components, indirectly suggesting the influence of the A. mellea source on metabolic and transcriptional response differences in GE. This study, centered on the host GE, indirectly deduces the association between A. mellea and GE, providing a theoretical basis for screening high-quality "fungus-GE" combinations. Further in-depth research and validation experiments will be conducted in conjunction with fungal omics.

The sensory system plays a critical role in development, as it enables the processing and integration of internal and external stimuli. Dysfunctions in this system lead to sensory processing disorders (SPDs), which affect approximately 5-13% of children aged 4-6 years, impacting not only sensory responsiveness but also social interaction, emotional regulation, motor coordination, learning, attention, communication, and sleep. Although SPDs have been extensively investigated from molecular to behavioral levels, their underlying neurobiological mechanisms remain debated, and reliable biomarkers are still lacking. Moreover, due to overlapping behavioral manifestations, SPDs are frequently misdiagnosed as attention deficit hyperactivity disorder (ADHD), leading to challenges in accurate diagnosis and treatment planning. This narrative review aims to synthesize current evidence on the neurofunctional and molecular underpinnings of SPDs in relation to ADHD, providing an integrated perspective on their converging and diverging pathways. By comparing neuroimaging and neurophysiological findings across the two conditions, we seek to deepen understanding of their shared mechanisms, clarify diagnostic boundaries, and inform the development of targeted, evidence-based interventions to address a critical gap in the field.

Cetaceans are artiodactyls adapted to live in the marine environment, and this group includes whales, dolphins, and porpoises. Although mitochondrial nucleotide diversity has been reported separately for many cetacean groups, the proportion of deleterious mutations in these populations is unknown. Furthermore, a comparison of mitogenomic diversities across all cetaceans is also lacking. To investigate this, we conducted a comparative genomic analysis of 2244 mitochondrial genomes from 65 populations across 32 cetacean species. We observed a 78-fold variation in mitogenomic diversity among cetacean populations, suggesting a large difference in genetic diversity. We used the ratio of nonsynonymous-to-synonymous diversities (dN/dS) to measure the proportion of deleterious mutations in the mitochondrial exomes. The dN/dS ratio showed a 22-fold difference between the cetacean population. Based on genetic theories, the large differences observed in the two measures could be attributed to differences in the effective sizes of the cetacean populations. Typically, small populations have low heterozygosity and a high dN/dS ratio, and the reverse is true for large populations. This was further confirmed by the negative correlation observed between heterozygosity and dN/dS ratios of cetacean populations. While our analysis revealed similarities in mitogenomic diversity between the endangered and least-concern cetacean species, the dN/dS ratio of the former was found to be higher than that of the latter. The findings of this study are useful for identifying the relative magnitude of reductions in the population sizes of different cetacean species. This will help conservation management efforts prioritise the use of limited resources, time, and effort to protect the cetacean populations that need immediate attention.

The blunt snout bream (Megalobrama amblycephala, BSB) is a freshwater economic fish with Chinese characteristics, and its genetic characteristics have unique value for studying fish evolution. The gynogenetic blunt snout bream (GBSB) obtained through distant hybridization between cross-order species, which showed a faster growth rate than the female parent, but its appearance is similar to that of BSB and is difficult to distinguish. Therefore, by comparing the transcriptome sequencing data of BSB and GBSB (SRA number: PRJNA893089, not released yet), we identified 30 SNPs associated with genes related to muscle growth, protein synthesis, and glycolysis that are unique to GBSB. Through multi-sample PCR detection and sequencing analysis, 16 SNPs with stable differences in GBSB and BSB were obtained. The polymorphism analysis of 16 SNP sites showed that 9 SNP sites were polymorphic in GBSB, which could be used to identify GBSB and its female parent, BSB. In addition, the 9 SNP sites are located in the myoz1a (myozenin 1a) gene, which is related to muscle development, and may provide insights for further study of muscle growth regulation. Therefore, this study provides candidate marker resources for GBSB germplasm resource identification and molecular marker-assisted breeding, which is beneficial for improving the efficiency and reliability of selection and breeding work.

Population size estimates are essential for investigating numerous aspects of the ecology, evolution, and conservation of wildlife. However, the life cycles of many species include cryptic life stages that are difficult to detect or sample, such as the non-breeding fractions typical of many bird populations. Quantifying the proportions of breeders and non-breeders is crucial to better assess their conservation status and population trends. We propose a simple method applicable to species that show phenotypic differences between adults and juveniles. By quantifying the proportion of ages, the size of the whole population, and its productivity, the size of the non-breeding and breeding fractions can be inferred. We applied this approach to the red-spectacled amazon, Amazona pretrei, a threatened parrot endemic to the Brazilian Atlantic Forest. The entire global population aggregates in winter in a few localities to feed on the seeds of the Parana pine Araucaria angustifolia, a critically endangered tree whose range has declined >97% due to massive exploitation. From a global population of ~16,000 individuals in 2015 and ~20,000 individuals in 2017, our methodology allowed us to estimate a low proportion of juveniles (14%) and a large proportion of non-breeders (80%) within the adult population, with narrow confidence intervals. These proportions did not change between years, but the estimated number of breeding pairs increased, from ca. 1300 to 1700 pairs, in parallel with the global population increase. Our methodology, with its possible improvements to reduce uncertainty in estimates, can be applied to the long-term monitoring of this and many other species, to better understand their conservation challenges and inform effective management strategies.

Drug resistance remains a significant challenge in cancer therapy, accounting for most relapses and contributing substantially to cancer-related mortality worldwide. Several molecular processes are linked to the development of resistance to anticancer drugs, with the most studied mechanisms including epigenetic changes, drug efflux, cell survival signalling pathways, and inactivation of anticancer drugs. Both intrinsic and acquired forms of resistance hinder tumour cell elimination, reducing treatment success. This translates to poorer patient outcomes and the need for more aggressive treatment regimens. Therefore, understanding these molecular processes is crucial for enhancing the efficacy of anticancer therapy. Medicinal plants offer potential to counter various resistance mechanisms through their diverse phytocompounds. These compounds may offer benefits including consistent availability, anticancer potency, few side effects, and minimal drug resistance. However, the bioavailability of these phytochemicals and the lack of extensive clinical trials remain key challenges. Therefore, this review provides in-depth information on the mechanisms that lead to drug resistance during cervical cancer therapy, the challenges related to phytochemical bioavailability, the current status, and future needs for clinical trials evaluating the application of medicinal plants to combat drug resistance in cancer cells.

Mitochondrial dysfunction is a key early pathological process in neurodegenerative diseases (NDs), leading to oxidative stress, impaired energy metabolism, and neuronal apoptosis prior to the onset of clinical symptoms. Although mitochondria represent important therapeutic targets, effective interventions targeting mitochondrial function remain limited. This review summarizes current evidence regarding the mechanisms by which melatonin protects mitochondria and evaluates its therapeutic relevance, with a primary focus on Alzheimer's disease, Parkinson's disease, and Huntington's disease-the major protagonists of NDs-while briefly covering other NDs such as amyotrophic lateral sclerosis, multiple sclerosis, and prion diseases. Melatonin selectively accumulates in neuronal mitochondria and exerts neuroprotection through multiple pathways: (1) direct scavenging of reactive oxygen species (ROS); (2) transcriptional activation of antioxidant defenses via the SIRT3 and Nrf2 pathways; (3) regulation of mitochondrial dynamics through DRP1 and OPA1; and (4) promotion of PINK1- and Parkin-mediated mitophagy. Additionally, melatonin exhibits context-dependent pleiotropy: under conditions of mild mitochondrial stress, it restores mitochondrial homeostasis; under conditions of severe mitochondrial damage, it promotes pro-survival autophagy by inhibiting the PI3K/AKT/mTOR pathway, thereby conferring stage-specific therapeutic advantages. Overall, melatonin offers a sophisticated mitochondria-targeting strategy for the treatment of NDs. However, successful clinical translation requires clarification of receptor-dependent signaling pathways, development of standardized dosing strategies, and validation in large-scale randomized controlled trials.

With the industry development of sea cucumber Apostichopus japonicus aquaculture, the indoor high cost and low survival rate have become serious problems. Therefore, it is necessary to optimize substrate selection for seedling protection in outdoor pond net cages. This study explores the succession of periphyton on the different substrate surface types, including a curvimurate net (CU), nylon mesh (NM), and ground cages (including a ground cage net (CN) and ground cage plate (CP)), and their effects on the seedling protection of sea cucumbers. In addition, we monitored the substrates' dry weight, chlorophyll-a, and the community composition of substrates, alongside seedling growth, yield, and survival rate. The results show that a total of 7 phyla, 23 genera, and 31 species were detected on the substrates, with diatoms dominating (19 species) and Chlorophyta (4 species) being the main species. The CU had the highest total number of alga species attached, significantly higher than the other substrates in week 13 (p < 0.05). In week 9, the diatom density dropped to its lowest point, and, after September, it rose with the decrease in water temperature. In terms of dry weight with and without ash, CP increased rapidly in the early stage, with NM, CU, and CP being significantly higher than CN in week 13 (p < 0.05). The chlorophyll-a content showed a decreasing-increasing-decreasing trend, with CU reaching 3.62 ± 0.48 μg/cm² in the 13th week, significantly higher than other substrates (p < 0.05). Finally, the A. japonicus survival rate and yield in the CU group at week 12 were significantly higher than those in the NM and ground cage groups (p < 0.05). At week 17, the average weight, yield, and survival rate in the CU group were still optimal, with the yield 5.76 times that in the initial dosage. These results suggest that the CU has a suitable mesh size, has good permeability, and may stably support sediment, which is conducive to the growth of benthic diatoms. In addition, it can provide sufficient natural feed and a good habitat environment and is the preferred substrate for A. japonicus seedling protection in outdoor pond net cages.