Pub Date : 2024-07-01Epub Date: 2024-05-31DOI: 10.1107/S1600577524003205
Beatrice E Jones, Ann Fitzpatrick, Kieran Fowell, Charlotte J C Edwards-Gayle, Nikul Khunti, Katsuaki Inoue, Steven Daniels, Eugene Williams, Camille Blayo, Rachel C Evans, Nathan Cowieson
Beamline B21 at the Diamond Light Source synchrotron in the UK is a small-angle X-ray scattering (SAXS) beamline that specializes in high-throughput measurements via automated sample delivery systems. A system has been developed whereby a sample can be illuminated by a focused beam of light coincident with the X-ray beam. The system is compatible with the highly automated sample delivery system at the beamline and allows a beamline user to select a light source from a broad range of wavelengths across the UV and visible spectrum and to control the timing and duration of the light pulse with respect to the X-ray exposure of the SAXS measurement. The intensity of the light source has been characterized across the wavelength range enabling experiments where a quantitative measure of dose is important. Finally, the utility of the system is demonstrated via measurement of several light-responsive samples.
英国钻石光源同步加速器的 B21 光束线是一条小角 X 射线散射 (SAXS) 光束线,专门通过自动样品传送系统进行高通量测量。目前已开发出一种系统,可通过与 X 射线光束重合的聚焦光束照射样品。该系统与光束线高度自动化的样品传送系统兼容,允许光束线用户从紫外和可见光谱的多种波长中选择光源,并控制光脉冲与 SAXS 测量的 X 射线曝光相关的时间和持续时间。光源的强度在整个波长范围内都有特征,因此可以进行对剂量进行定量测量非常重要的实验。最后,通过对几个光响应样品的测量,展示了该系统的实用性。
{"title":"Developing an in situ LED irradiation system for small-angle X-ray scattering at B21, Diamond Light Source.","authors":"Beatrice E Jones, Ann Fitzpatrick, Kieran Fowell, Charlotte J C Edwards-Gayle, Nikul Khunti, Katsuaki Inoue, Steven Daniels, Eugene Williams, Camille Blayo, Rachel C Evans, Nathan Cowieson","doi":"10.1107/S1600577524003205","DOIUrl":"10.1107/S1600577524003205","url":null,"abstract":"<p><p>Beamline B21 at the Diamond Light Source synchrotron in the UK is a small-angle X-ray scattering (SAXS) beamline that specializes in high-throughput measurements via automated sample delivery systems. A system has been developed whereby a sample can be illuminated by a focused beam of light coincident with the X-ray beam. The system is compatible with the highly automated sample delivery system at the beamline and allows a beamline user to select a light source from a broad range of wavelengths across the UV and visible spectrum and to control the timing and duration of the light pulse with respect to the X-ray exposure of the SAXS measurement. The intensity of the light source has been characterized across the wavelength range enabling experiments where a quantitative measure of dose is important. Finally, the utility of the system is demonstrated via measurement of several light-responsive samples.</p>","PeriodicalId":48729,"journal":{"name":"Journal of Synchrotron Radiation","volume":null,"pages":null},"PeriodicalIF":2.5,"publicationDate":"2024-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11226168/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141181069","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-07-01Epub Date: 2024-06-05DOI: 10.1107/S1600577524003552
Ralf D Geckeler, Andreas Just, Michael Krause, Olaf Schnabel, Ian Lacey, Damon English, Valeriy V Yashchuk
Deflectometric profilometers are used to precisely measure the form of beam shaping optics of synchrotrons and X-ray free-electron lasers. They often utilize autocollimators which measure slope by evaluating the displacement of a reticle image on a detector. Based on our privileged access to the raw image data of an autocollimator, novel strategies to reduce the systematic measurement errors by using a set of overlapping images of the reticle obtained at different positions on the detector are discussed. It is demonstrated that imaging properties such as, for example, geometrical distortions and vignetting, can be extracted from this redundant set of images without recourse to external calibration facilities. This approach is based on the fact that the properties of the reticle itself do not change - all changes in the reticle image are due to the imaging process. Firstly, by combining interpolation and correlation, it is possible to determine the shift of a reticle image relative to a reference image with minimal error propagation. Secondly, the intensity of the reticle image is analysed as a function of its position on the CCD and a vignetting correction is calculated. Thirdly, the size of the reticle image is analysed as a function of its position and an imaging distortion correction is derived. It is demonstrated that, for different measurement ranges and aperture diameters of the autocollimator, reductions in the systematic errors of up to a factor of four to five can be achieved without recourse to external measurements.
偏转轮廓仪用于精确测量同步加速器和 X 射线自由电子激光器的光束整形光学器件的形状。它们通常使用自动准直仪,通过评估检测器上网罩图像的位移来测量斜率。我们有幸获得了自动准直仪的原始图像数据,在此基础上,我们讨论了通过使用一组在探测器上不同位置获得的网罩重叠图像来减少系统测量误差的新策略。实验证明,无需借助外部校准设备,即可从这组冗余图像中提取几何失真和渐晕等成像特性。这种方法基于这样一个事实,即视网膜本身的属性不会发生变化,视网膜图像的所有变化都是由成像过程引起的。首先,通过将插值和相关性结合起来,可以在误差传播最小的情况下确定视网膜图像相对于参考图像的偏移。其次,将视网膜图像的强度作为其在 CCD 上位置的函数进行分析,并计算光晕校正。第三,分析视网膜图像的大小与其位置的函数关系,并得出成像失真校正。结果表明,对于自动准直仪的不同测量范围和光圈直径,系统误差最多可减少四到五倍,而无需借助外部测量。
{"title":"Self-calibration strategies for reducing systematic slope measurement errors of autocollimators in deflectometric profilometry.","authors":"Ralf D Geckeler, Andreas Just, Michael Krause, Olaf Schnabel, Ian Lacey, Damon English, Valeriy V Yashchuk","doi":"10.1107/S1600577524003552","DOIUrl":"10.1107/S1600577524003552","url":null,"abstract":"<p><p>Deflectometric profilometers are used to precisely measure the form of beam shaping optics of synchrotrons and X-ray free-electron lasers. They often utilize autocollimators which measure slope by evaluating the displacement of a reticle image on a detector. Based on our privileged access to the raw image data of an autocollimator, novel strategies to reduce the systematic measurement errors by using a set of overlapping images of the reticle obtained at different positions on the detector are discussed. It is demonstrated that imaging properties such as, for example, geometrical distortions and vignetting, can be extracted from this redundant set of images without recourse to external calibration facilities. This approach is based on the fact that the properties of the reticle itself do not change - all changes in the reticle image are due to the imaging process. Firstly, by combining interpolation and correlation, it is possible to determine the shift of a reticle image relative to a reference image with minimal error propagation. Secondly, the intensity of the reticle image is analysed as a function of its position on the CCD and a vignetting correction is calculated. Thirdly, the size of the reticle image is analysed as a function of its position and an imaging distortion correction is derived. It is demonstrated that, for different measurement ranges and aperture diameters of the autocollimator, reductions in the systematic errors of up to a factor of four to five can be achieved without recourse to external measurements.</p>","PeriodicalId":48729,"journal":{"name":"Journal of Synchrotron Radiation","volume":null,"pages":null},"PeriodicalIF":2.5,"publicationDate":"2024-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11226160/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141262181","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-07-01Epub Date: 2024-05-21DOI: 10.1107/S1600577524003229
Anico Kulow, Javier Pérez, Redhouane Boudjehem, Eric Gautier, Sébastien Pairis, Samy Ould-Chikh, Jean Louis Hazemann, Julio César da Silva
X-ray ptychography and ptychographic computed tomography have seen a rapid rise since the advent of fourth-generation synchrotrons with a high degree of coherent radiation. In addition to quantitative multiscale structural analysis, ptychography with spectral capabilities has been developed, allowing for spatial-localized multiscale structural and spectral information of samples. The SWING beamline of Synchrotron SOLEIL has recently developed a nanoprobe setup where the endstation's first spectral and resonant ptychographic measurements have been successfully conducted. A metallic nickel wire sample was measured using 2D spectral ptychography in XANES mode and resonant ptychographic tomography. From the 2D spectral ptychography measurements, the spectra of the components of the sample's complex-valued refractive index, δ and β, were extracted, integrated along the sample thickness. By performing resonance ptychographic tomography at two photon energies, 3D maps of the refractive index decrement, δ, were obtained at the Ni K-edge energy and another energy above the edge. These maps allowed the detection of impurities in the Ni wire. The significance of accounting for the atomic scattering factor is demonstrated in the calculation of electron density near a resonance through the use of the δ values. These results indicate that at the SWING beamline it is possible to conduct state-of-the-art spectral and resonant ptychography experiments using the nanoprobe setup.
{"title":"First X-ray spectral ptychography and resonant ptychographic computed tomography experiments at the SWING beamline from Synchrotron SOLEIL.","authors":"Anico Kulow, Javier Pérez, Redhouane Boudjehem, Eric Gautier, Sébastien Pairis, Samy Ould-Chikh, Jean Louis Hazemann, Julio César da Silva","doi":"10.1107/S1600577524003229","DOIUrl":"10.1107/S1600577524003229","url":null,"abstract":"<p><p>X-ray ptychography and ptychographic computed tomography have seen a rapid rise since the advent of fourth-generation synchrotrons with a high degree of coherent radiation. In addition to quantitative multiscale structural analysis, ptychography with spectral capabilities has been developed, allowing for spatial-localized multiscale structural and spectral information of samples. The SWING beamline of Synchrotron SOLEIL has recently developed a nanoprobe setup where the endstation's first spectral and resonant ptychographic measurements have been successfully conducted. A metallic nickel wire sample was measured using 2D spectral ptychography in XANES mode and resonant ptychographic tomography. From the 2D spectral ptychography measurements, the spectra of the components of the sample's complex-valued refractive index, δ and β, were extracted, integrated along the sample thickness. By performing resonance ptychographic tomography at two photon energies, 3D maps of the refractive index decrement, δ, were obtained at the Ni K-edge energy and another energy above the edge. These maps allowed the detection of impurities in the Ni wire. The significance of accounting for the atomic scattering factor is demonstrated in the calculation of electron density near a resonance through the use of the δ values. These results indicate that at the SWING beamline it is possible to conduct state-of-the-art spectral and resonant ptychography experiments using the nanoprobe setup.</p>","PeriodicalId":48729,"journal":{"name":"Journal of Synchrotron Radiation","volume":null,"pages":null},"PeriodicalIF":2.5,"publicationDate":"2024-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11226156/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141076695","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-07-01Epub Date: 2024-06-24DOI: 10.1107/S1600577524004090
M Krumrey, D Skroblin, L Cibik, M Collon, G Vacanti, N Barrière, E Hauser, M Bavdaz
The New Advanced Telescope for High ENergy Astrophysics (NewAthena) will be the largest space-based X-ray observatory ever built. It will have an effective area above 1.1 m2 at 1 keV, which corresponds to a polished mirror surface of about 300 m2 due to the grazing incidence. As such a mirror area is not achievable with an acceptable mass even with nested shells, silicon pore optics (SPO) technology will be utilized. In the PTB laboratory at BESSY II, two dedicated beamlines are in use for their characterization with monochromatic radiation at 1 keV and a low divergence well below 2 arcsec: the X-ray Pencil Beam Facility (XPBF 1) and the X-ray Parallel Beam Facility (XPBF 2.0), where beam sizes up to 8 mm × 8 mm are available while maintaining low beam divergence. This beamline is used for characterizing mirror stacks and controlling the focusing properties of mirror modules (MMs) - consisting of four mirror stacks - during their assembly at the beamline. A movable CCD based camera system 12 m from the MM registers the direct and the reflected beams. The positioning of the detector is verified by a laser tracker. The energy-dependent reflectance in double reflection through the pores of an MM with an Ir coating was measured at the PTB four-crystal monochromator beamline in the photon energy range 1.75 keV to 10 keV, revealing the effects of the Ir M edges. The measured reflectance properties are in agreement with the design values to achieve the envisaged effective area.
新的高能天体物理学高级望远镜(NewAthena)将是有史以来最大的空间 X 射线观测站。它在 1 keV 时的有效面积将超过 1.1 平方米,由于掠入射,这相当于一个约 300 平方米的抛光镜面。由于即使采用嵌套式外壳,也无法在可接受的质量范围内实现这样的镜面面积,因此将采用硅孔光学(SPO)技术。在 BESSY II 的 PTB 实验室中,有两条专门的光束线用于用 1 keV 的单色辐射和远小于 2 弧秒的低发散对它们进行鉴定:X 射线铅笔光束设施(XPBF 1)和 X 射线平行光束设施(XPBF 2.0),在这两条光束线中,光束尺寸可达 8 毫米 × 8 毫米,同时保持低光束发散。该光束线用于鉴定镜组,并控制由四个镜组组成的镜组模块(MMs)在光束线组装时的聚焦特性。一个基于 CCD 的可移动照相系统在距离 MM 12 米处记录直射和反射光束。探测器的定位由激光跟踪器进行验证。在 PTB 四晶体单色仪光束线上,测量了在 1.75 keV 至 10 keV 的光子能量范围内,通过带有 Ir 涂层的 MM 孔隙的双反射中与能量相关的反射率,揭示了 Ir M 边缘的影响。测得的反射特性与设计值一致,达到了预期的有效面积。
{"title":"Characterization of silicon pore optics for the NewAthena X-ray observatory in the PTB laboratory at BESSY II.","authors":"M Krumrey, D Skroblin, L Cibik, M Collon, G Vacanti, N Barrière, E Hauser, M Bavdaz","doi":"10.1107/S1600577524004090","DOIUrl":"10.1107/S1600577524004090","url":null,"abstract":"<p><p>The New Advanced Telescope for High ENergy Astrophysics (NewAthena) will be the largest space-based X-ray observatory ever built. It will have an effective area above 1.1 m<sup>2</sup> at 1 keV, which corresponds to a polished mirror surface of about 300 m<sup>2</sup> due to the grazing incidence. As such a mirror area is not achievable with an acceptable mass even with nested shells, silicon pore optics (SPO) technology will be utilized. In the PTB laboratory at BESSY II, two dedicated beamlines are in use for their characterization with monochromatic radiation at 1 keV and a low divergence well below 2 arcsec: the X-ray Pencil Beam Facility (XPBF 1) and the X-ray Parallel Beam Facility (XPBF 2.0), where beam sizes up to 8 mm × 8 mm are available while maintaining low beam divergence. This beamline is used for characterizing mirror stacks and controlling the focusing properties of mirror modules (MMs) - consisting of four mirror stacks - during their assembly at the beamline. A movable CCD based camera system 12 m from the MM registers the direct and the reflected beams. The positioning of the detector is verified by a laser tracker. The energy-dependent reflectance in double reflection through the pores of an MM with an Ir coating was measured at the PTB four-crystal monochromator beamline in the photon energy range 1.75 keV to 10 keV, revealing the effects of the Ir M edges. The measured reflectance properties are in agreement with the design values to achieve the envisaged effective area.</p>","PeriodicalId":48729,"journal":{"name":"Journal of Synchrotron Radiation","volume":null,"pages":null},"PeriodicalIF":2.5,"publicationDate":"2024-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11226178/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141451986","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-07-01Epub Date: 2024-06-06DOI: 10.1107/S1600577524003904
Mark Roper, Suzanna Percival, Katherine Morrow
In a photoinjector electron source, the initial transverse electron bunch properties are determined by the spatial properties of the laser beam on the photocathode. Spatial shaping of the laser is commonly achieved by relay imaging an illuminated circular mask onto the photocathode. However, the Gibbs phenomenon shows that recreating the sharp edge and discontinuity of the cut profile at the mask on the cathode is not possible with an optical relay of finite aperture. Furthermore, the practical injection of the laser into the photoinjector results in the beam passing through small or asymmetrically positioned apertures. This work uses wavefront propagation to show how the transport apertures cause ripple structures to appear in the transverse laser profile even when effectively the full laser power is transmitted. The impact of these structures on the propagated electron bunch has also been studied with electron bunches of high and low charge density. With high charge density, the ripples in the initial charge distribution rapidly wash-out through space charge effects. However, for bunches with low charge density, the ripples can persist through the bunch transport. Although statistical properties of the electron bunch in the cases studied are not greatly affected, there is the potential for the distorted electron bunch to negatively impact machine performance. Therefore, these effects should be considered in the design phase of accelerators using photoinjectors.
{"title":"The effect of transport apertures on relay-imaged, sharp-edged laser profiles in photoinjectors and the impact on electron beam properties.","authors":"Mark Roper, Suzanna Percival, Katherine Morrow","doi":"10.1107/S1600577524003904","DOIUrl":"10.1107/S1600577524003904","url":null,"abstract":"<p><p>In a photoinjector electron source, the initial transverse electron bunch properties are determined by the spatial properties of the laser beam on the photocathode. Spatial shaping of the laser is commonly achieved by relay imaging an illuminated circular mask onto the photocathode. However, the Gibbs phenomenon shows that recreating the sharp edge and discontinuity of the cut profile at the mask on the cathode is not possible with an optical relay of finite aperture. Furthermore, the practical injection of the laser into the photoinjector results in the beam passing through small or asymmetrically positioned apertures. This work uses wavefront propagation to show how the transport apertures cause ripple structures to appear in the transverse laser profile even when effectively the full laser power is transmitted. The impact of these structures on the propagated electron bunch has also been studied with electron bunches of high and low charge density. With high charge density, the ripples in the initial charge distribution rapidly wash-out through space charge effects. However, for bunches with low charge density, the ripples can persist through the bunch transport. Although statistical properties of the electron bunch in the cases studied are not greatly affected, there is the potential for the distorted electron bunch to negatively impact machine performance. Therefore, these effects should be considered in the design phase of accelerators using photoinjectors.</p>","PeriodicalId":48729,"journal":{"name":"Journal of Synchrotron Radiation","volume":null,"pages":null},"PeriodicalIF":2.5,"publicationDate":"2024-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11226154/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141285070","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-07-01Epub Date: 2024-05-21DOI: 10.1107/S1600577524002923
Viktor Nikitin, Gregg Wildenberg, Alberto Mittone, Pavel Shevchenko, Alex Deriy, Francesco De Carlo
Despite the increased brilliance of the new generation synchrotron sources, there is still a challenge with high-resolution scanning of very thick and absorbing samples, such as a whole mouse brain stained with heavy elements, and, extending further, brains of primates. Samples are typically cut into smaller parts, to ensure a sufficient X-ray transmission, and scanned separately. Compared with the standard tomography setup where the sample would be cut into many pillars, the laminographic geometry operates with slab-shaped sections significantly reducing the number of sample parts to be prepared, the cutting damage and data stitching problems. In this work, a laminography pipeline for imaging large samples (>1 cm) at micrometre resolution is presented. The implementation includes a low-cost instrument setup installed at the 2-BM micro-CT beamline of the Advanced Photon Source. Additionally, sample mounting, scanning techniques, data stitching procedures, a fast reconstruction algorithm with low computational complexity, and accelerated reconstruction on multi-GPU systems for processing large-scale datasets are presented. The applicability of the whole laminography pipeline was demonstrated by imaging four sequential slabs throughout an entire mouse brain sample stained with osmium, in total generating approximately 12 TB of raw data for reconstruction.
{"title":"Laminography as a tool for imaging large-size samples with high resolution.","authors":"Viktor Nikitin, Gregg Wildenberg, Alberto Mittone, Pavel Shevchenko, Alex Deriy, Francesco De Carlo","doi":"10.1107/S1600577524002923","DOIUrl":"10.1107/S1600577524002923","url":null,"abstract":"<p><p>Despite the increased brilliance of the new generation synchrotron sources, there is still a challenge with high-resolution scanning of very thick and absorbing samples, such as a whole mouse brain stained with heavy elements, and, extending further, brains of primates. Samples are typically cut into smaller parts, to ensure a sufficient X-ray transmission, and scanned separately. Compared with the standard tomography setup where the sample would be cut into many pillars, the laminographic geometry operates with slab-shaped sections significantly reducing the number of sample parts to be prepared, the cutting damage and data stitching problems. In this work, a laminography pipeline for imaging large samples (>1 cm) at micrometre resolution is presented. The implementation includes a low-cost instrument setup installed at the 2-BM micro-CT beamline of the Advanced Photon Source. Additionally, sample mounting, scanning techniques, data stitching procedures, a fast reconstruction algorithm with low computational complexity, and accelerated reconstruction on multi-GPU systems for processing large-scale datasets are presented. The applicability of the whole laminography pipeline was demonstrated by imaging four sequential slabs throughout an entire mouse brain sample stained with osmium, in total generating approximately 12 TB of raw data for reconstruction.</p>","PeriodicalId":48729,"journal":{"name":"Journal of Synchrotron Radiation","volume":null,"pages":null},"PeriodicalIF":2.5,"publicationDate":"2024-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11226144/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141076788","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-07-01Epub Date: 2024-06-25DOI: 10.1107/S1600577524004569
Bonghoon Oh, Jinjoo Ko, Seunghwan Shin, Jaehyun Kim, Jaeyu Lee, Gyeongsu Jang
A multi-objective genetic algorithm (MOGA) is a powerful global optimization tool, but its results are considerably affected by the crossover parameter ηc. Finding an appropriate ηc demands too much computing time because MOGA needs be run several times in order to find a good ηc. In this paper, a self-adaptive crossover parameter is introduced in a strategy to adopt a new ηc for every generation while running MOGA. This new scheme has also been adopted for a multi-generation Gaussian process optimization (MGGPO) when producing trial solutions. Compared with the existing MGGPO and MOGA, the MGGPO and MOGA with the new strategy show better performance in nonlinear optimization for the design of low-emittance storage rings.
{"title":"Nonlinear optimization for a low-emittance storage ring.","authors":"Bonghoon Oh, Jinjoo Ko, Seunghwan Shin, Jaehyun Kim, Jaeyu Lee, Gyeongsu Jang","doi":"10.1107/S1600577524004569","DOIUrl":"10.1107/S1600577524004569","url":null,"abstract":"<p><p>A multi-objective genetic algorithm (MOGA) is a powerful global optimization tool, but its results are considerably affected by the crossover parameter η<sub>c</sub>. Finding an appropriate η<sub>c</sub> demands too much computing time because MOGA needs be run several times in order to find a good η<sub>c</sub>. In this paper, a self-adaptive crossover parameter is introduced in a strategy to adopt a new η<sub>c</sub> for every generation while running MOGA. This new scheme has also been adopted for a multi-generation Gaussian process optimization (MGGPO) when producing trial solutions. Compared with the existing MGGPO and MOGA, the MGGPO and MOGA with the new strategy show better performance in nonlinear optimization for the design of low-emittance storage rings.</p>","PeriodicalId":48729,"journal":{"name":"Journal of Synchrotron Radiation","volume":null,"pages":null},"PeriodicalIF":2.5,"publicationDate":"2024-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11226143/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141451990","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-07-01Epub Date: 2024-06-11DOI: 10.1107/S1600577524003254
Christoph Kittel, Marco Calvi, Sven Reiche, Nicholas Sammut, Guanglei Wang, Eduard Prat
This article presents a demonstration of the improved performance of an X-ray free-electron laser (FEL) using the optical klystron mechanism and helical undulator configuration, in comparison with the common planar undulator configuration without optical klystron. The demonstration was carried out at Athos, the soft X-ray beamline of SwissFEL. Athos has variable-polarization undulators, and small magnetic chicanes placed between every two undulators to fully exploit the optical klystron. It was found that, for wavelengths of 1.24 nm and 3.10 nm, the required length to achieve FEL saturation is reduced by about 35% when using both the optical klystron and helical undulators, with each effect accounting for about half of the improvement. Moreover, it is shown that a helical undulator configuration provides a 20% to 50% higher pulse energy than planar undulators. This work represents an important step towards more compact and high-power FELs, rendering this key technology more efficient, affordable and accessible to the scientific community.
这篇文章展示了使用光速斯特龙机制和螺旋起振器配置的 X 射线自由电子激光器(FEL)与不使用光速斯特龙的普通平面起振器配置相比所获得的性能改进。演示是在瑞士自由电子激光器的软 X 射线光束线 Athos 上进行的。Athos 有可变极化的起伏器,每两个起伏器之间有小的磁卡槽,以充分利用光学速调管。研究发现,在波长为 1.24 nm 和 3.10 nm 的情况下,如果同时使用光速调谐器和螺旋起伏器,达到 FEL 饱和所需的长度可减少约 35%,两种效应各占改善效果的一半左右。此外,研究还表明,螺旋起伏器配置的脉冲能量比平面起伏器高 20% 至 50%。这项工作标志着向更紧凑、更高功率的 FEL 迈出了重要的一步,使这项关键技术更加高效、经济,更容易为科学界所接受。
{"title":"Enhanced X-ray free-electron laser performance with optical klystron and helical undulators.","authors":"Christoph Kittel, Marco Calvi, Sven Reiche, Nicholas Sammut, Guanglei Wang, Eduard Prat","doi":"10.1107/S1600577524003254","DOIUrl":"10.1107/S1600577524003254","url":null,"abstract":"<p><p>This article presents a demonstration of the improved performance of an X-ray free-electron laser (FEL) using the optical klystron mechanism and helical undulator configuration, in comparison with the common planar undulator configuration without optical klystron. The demonstration was carried out at Athos, the soft X-ray beamline of SwissFEL. Athos has variable-polarization undulators, and small magnetic chicanes placed between every two undulators to fully exploit the optical klystron. It was found that, for wavelengths of 1.24 nm and 3.10 nm, the required length to achieve FEL saturation is reduced by about 35% when using both the optical klystron and helical undulators, with each effect accounting for about half of the improvement. Moreover, it is shown that a helical undulator configuration provides a 20% to 50% higher pulse energy than planar undulators. This work represents an important step towards more compact and high-power FELs, rendering this key technology more efficient, affordable and accessible to the scientific community.</p>","PeriodicalId":48729,"journal":{"name":"Journal of Synchrotron Radiation","volume":null,"pages":null},"PeriodicalIF":2.5,"publicationDate":"2024-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11226174/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141307222","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-07-01Epub Date: 2024-06-11DOI: 10.1107/S1600577524003618
Jan Philipp Burchert, Jasper Frohn, Ulrike Rölleke, Hendrik Bruns, Boram Yu, Sophie Charlotte Gleber, Roland Stange, Madleen Busse, Markus Osterhoff, Tim Salditt, Sarah Köster
X-rays can penetrate deeply into biological cells and thus allow for examination of their internal structures with high spatial resolution. In this study, X-ray phase-contrast imaging and tomography is combined with an X-ray-compatible optical stretcher and microfluidic sample delivery. Using this setup, individual cells can be kept in suspension while they are examined with the X-ray beam at a synchrotron. From the recorded holograms, 2D phase shift images that are proportional to the projected local electron density of the investigated cell can be calculated. From the tomographic reconstruction of multiple such projections the 3D electron density can be obtained. The cells can thus be studied in a hydrated or even living state, thus avoiding artifacts from freezing, drying or embedding, and can in principle also be subjected to different sample environments or mechanical strains. This combination of techniques is applied to living as well as fixed and stained NIH3T3 mouse fibroblasts and the effect of the beam energy on the phase shifts is investigated. Furthermore, a 3D algebraic reconstruction scheme and a dedicated mathematical description is used to follow the motion of the trapped cells in the optical stretcher for multiple rotations.
X 射线可以深入生物细胞,因此可以对其内部结构进行高空间分辨率的检查。在这项研究中,X 射线相位对比成像和层析成像与兼容 X 射线的光学担架和微流体样品输送相结合。利用这种装置,可以将单个细胞保持在悬浮状态,同时用同步加速器的 X 射线光束对其进行检查。根据记录的全息图像,可以计算出与被检细胞的投影局部电子密度成正比的二维相移图像。通过对多个此类投影进行层析重建,可以获得三维电子密度。因此,细胞可以在水合状态甚至活体状态下进行研究,从而避免了冷冻、干燥或包埋造成的伪影,原则上也可以在不同的样品环境或机械应变下进行研究。这种技术组合适用于活体以及固定和染色的 NIH3T3 小鼠成纤维细胞,并研究了光束能量对相移的影响。此外,还使用了三维代数重建方案和专门的数学描述来跟踪被困细胞在光学担架中多次旋转时的运动情况。
{"title":"X-ray phase-contrast tomography of cells manipulated with an optical stretcher.","authors":"Jan Philipp Burchert, Jasper Frohn, Ulrike Rölleke, Hendrik Bruns, Boram Yu, Sophie Charlotte Gleber, Roland Stange, Madleen Busse, Markus Osterhoff, Tim Salditt, Sarah Köster","doi":"10.1107/S1600577524003618","DOIUrl":"10.1107/S1600577524003618","url":null,"abstract":"<p><p>X-rays can penetrate deeply into biological cells and thus allow for examination of their internal structures with high spatial resolution. In this study, X-ray phase-contrast imaging and tomography is combined with an X-ray-compatible optical stretcher and microfluidic sample delivery. Using this setup, individual cells can be kept in suspension while they are examined with the X-ray beam at a synchrotron. From the recorded holograms, 2D phase shift images that are proportional to the projected local electron density of the investigated cell can be calculated. From the tomographic reconstruction of multiple such projections the 3D electron density can be obtained. The cells can thus be studied in a hydrated or even living state, thus avoiding artifacts from freezing, drying or embedding, and can in principle also be subjected to different sample environments or mechanical strains. This combination of techniques is applied to living as well as fixed and stained NIH3T3 mouse fibroblasts and the effect of the beam energy on the phase shifts is investigated. Furthermore, a 3D algebraic reconstruction scheme and a dedicated mathematical description is used to follow the motion of the trapped cells in the optical stretcher for multiple rotations.</p>","PeriodicalId":48729,"journal":{"name":"Journal of Synchrotron Radiation","volume":null,"pages":null},"PeriodicalIF":2.5,"publicationDate":"2024-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11226146/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141307223","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-07-01Epub Date: 2024-06-21DOI: 10.1107/S1600577524004429
Dongni Zhang, Ming Li, Xiaoyu Li, Huihua Lu, Yuhui Li, Jie Zhang, Gang Li, Weiwei Zhang, Yuhui Dong, Ye Tao, Weifan Sheng, Peng Liu
A novel insertion device is introduced, designated as the Mango wiggler, designed for synchrotron radiation (SR) imaging that provides a large field of view. This innovative device is constructed from two orthogonal planar wigglers with a small difference in their period lengths, eliciting the phase difference of the magnetic fields to incrementally transitions from 0 to π/2. Such a configuration enlarges the vertical divergence of the light source, as with the horizontal divergence. The appellation `Mango wiggler' derives from the distinctive mango-shaped contour of its radiation field. A comprehensive suite of theoretical analyses and simulations has been executed to elucidate the radiation properties of the Mango wiggler, employing SPECTRA and Mathematica as calculation tools. In conjunction with the ongoing construction of the High Energy Photon Source in Beijing a practical Mango wiggler device has been fabricated for utilization in SR imaging applications. Theoretical analyses were applied to this particular Mango wiggler to yield several theoretical conclusions, and several simulations were performed according to the measured magnetic field results.
{"title":"Mango wiggler as a novel insertion device providing a large and symmetrical imaging field of view.","authors":"Dongni Zhang, Ming Li, Xiaoyu Li, Huihua Lu, Yuhui Li, Jie Zhang, Gang Li, Weiwei Zhang, Yuhui Dong, Ye Tao, Weifan Sheng, Peng Liu","doi":"10.1107/S1600577524004429","DOIUrl":"10.1107/S1600577524004429","url":null,"abstract":"<p><p>A novel insertion device is introduced, designated as the Mango wiggler, designed for synchrotron radiation (SR) imaging that provides a large field of view. This innovative device is constructed from two orthogonal planar wigglers with a small difference in their period lengths, eliciting the phase difference of the magnetic fields to incrementally transitions from 0 to π/2. Such a configuration enlarges the vertical divergence of the light source, as with the horizontal divergence. The appellation `Mango wiggler' derives from the distinctive mango-shaped contour of its radiation field. A comprehensive suite of theoretical analyses and simulations has been executed to elucidate the radiation properties of the Mango wiggler, employing SPECTRA and Mathematica as calculation tools. In conjunction with the ongoing construction of the High Energy Photon Source in Beijing a practical Mango wiggler device has been fabricated for utilization in SR imaging applications. Theoretical analyses were applied to this particular Mango wiggler to yield several theoretical conclusions, and several simulations were performed according to the measured magnetic field results.</p>","PeriodicalId":48729,"journal":{"name":"Journal of Synchrotron Radiation","volume":null,"pages":null},"PeriodicalIF":2.5,"publicationDate":"2024-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11226153/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141433161","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}