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A high throughput and micrometre spatial resolution design for a versatile resonant inelastic X-ray scattering spectrometer. 一种多用途共振非弹性x射线散射光谱仪的高通量和微米空间分辨率设计。
IF 3 3区 物理与天体物理 Pub Date : 2025-09-01 Epub Date: 2025-07-17 DOI: 10.1107/S1600577525005314
Ruijie Wang, Pengjun Zhang, Qingchen Li, Yujian Xia, Lisheng Qian, Xuefei Feng, Shuangming Chen, Xiaosong Liu

A versatile scheme has been meticulously engineered for a resonant inelastic X-ray scattering spectrometer, enabling free switching between high throughput configurations with narrow spatial-resolution and low throughput setups boasting broad spatial-resolution capabilities. The high throughput mode enhances signal intensity threefold compared with setups with only the dispersive subassembly, while achieving 2.7 µm resolution within a 16 µm range. Alternatively, the broad spatial-resolution mode achieves 2.7 µm resolution across the entire optical footprint. Furthermore, the incorporation of specialized mirrors not only facilitates focusing but also paves the way for potential enhancements to the strip-shaped detector, thereby augmenting its resolution. By employing a vertically compact beam spot in conjunction with the Hettrick-Underwood optical configuration, this spectrometer attains a resolving power surpassing 12000 for 284-780 eV. This work provides an exhaustive exploration of the multifaceted attributes to the spectrometer's optical design, highlighting its adaptability and high performance in diverse experimental scenarios.

一个通用的方案已经精心设计的谐振非弹性x射线散射光谱仪,使自由切换之间的高通量配置具有狭窄的空间分辨率和低通量设置具有广泛的空间分辨率能力。与仅采用色散组件的设置相比,高通量模式将信号强度增强了三倍,同时在16 μ m范围内实现2.7 μ m分辨率。另外,宽空间分辨率模式在整个光足迹范围内实现2.7µm分辨率。此外,专用反射镜的结合不仅有助于聚焦,而且为潜在的增强条形探测器铺平了道路,从而提高了它的分辨率。通过采用垂直紧凑的光束光斑与hetrick - underwood光学结构相结合,该光谱仪在284-780 eV范围内的分辨率超过12000。这项工作提供了一个详尽的探索多面属性的光谱仪的光学设计,突出其适应性和高性能在不同的实验场景。
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引用次数: 0
An X-ray beamline for utilizing intense, high-energy undulator radiation. 一种利用强烈的高能波动辐射的x射线束线。
IF 3 3区 物理与天体物理 Pub Date : 2025-09-01 Epub Date: 2025-08-19 DOI: 10.1107/S1600577525006903
Hirokatsu Yumoto, Takahisa Koyama, Hiroshi Yamazaki, Yasunori Senba, Yujiro Hayashi, Taito Osaka, Ichiro Inoue, Kenji Tamasaku, Shunji Goto, Makina Yabashi, Haruhiko Ohashi

The design, development and performance of an X-ray beamline for utilizing intense, high-energy undulator radiation are presented. A double multilayer monochromator, consisting of 150 pairs of 3.33 nm periodic Cr/C multilayers, provides intense X-rays by extracting a 1% energy bandwidth from high-order harmonic undulator radiation. We experimentally confirmed a high flux of 3.4 × 1013 (1.3 × 1011) photons s-1 with a beam size of 0.7 (0.3) mm (vertical) × 2.9 (∼4) mm (horizontal) at an X-ray energy of 100 (267) keV with a 1.0% (1.2%) energy bandwidth. Excellent performance of the high-energy high-flux X-ray beam was proven by conducting high-speed imaging analysis.

介绍了利用强、高能波动辐射的x射线光束线的设计、研制和性能。由150对3.33 nm周期Cr/C多层膜组成的双多层单色仪,通过从高阶谐波波动辐射中提取1%的能量带宽来提供强x射线。实验证实了3.4 × 1013 (1.3 × 1011)个光子s-1的高通量,光束尺寸为0.7 (0.3)mm(垂直)× 2.9 (~ 4) mm(水平),x射线能量为100 (267)keV,能量带宽为1.0%(1.2%)。通过高速成像分析,证明了高能高通量x射线束的优异性能。
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引用次数: 0
Characterization of grating monochromator performance based on start-to-end FEL pulse propagation method. 基于始端FEL脉冲传播法的光栅单色器性能表征。
IF 3 3区 物理与天体物理 Pub Date : 2025-09-01 Epub Date: 2025-07-31 DOI: 10.1107/S1600577525006472
Ye Zhu, Chuan Yang, Kai Hu, Chen Wu, Zhenjiang Xing, Zhongmin Xu, Weiqing Zhang

Grating monochromators are crucial optical elements in soft X-ray free-electron laser (XFEL) beamlines. Accurately evaluating the properties of grating monochromators with near-realistic XFEL pulse is of paramount importance. In this study, we utilize the start-to-end pulse propagation method to conduct a characterization of grating monochromator performance at the FEL-1 beamline of S3FEL. The primary focuses include evaluating the monochromator's resolving power, assessing the impact of longitudinal source jitter on resolving power, analyzing diffraction effects due to grating's limited aperture and investigating the influence of thermal deformation. The novelty of this research lies in the direct use of FEL pulse propagation, providing simulation results that are more reliable than those obtained using Gaussian sources. The simulations reveal that the resolving power of the monochromator is significantly influenced by the aforementioned factors, highlighting the importance of considering real FEL beam characteristics in the design and evaluation of grating monochromators for FEL applications.

光栅单色器是软x射线自由电子激光(XFEL)光束线中的关键光学元件。准确地评估光栅单色仪在接近真实的XFEL脉冲下的性能是至关重要的。在这项研究中,我们利用开始到端脉冲传播方法对S3FEL的fe1光束线处的光栅单色器性能进行了表征。主要包括单色仪的分辨率评估、纵向光源抖动对分辨率的影响评估、光栅有限孔径衍射效应分析以及热变形的影响研究。该研究的新颖之处在于直接使用FEL脉冲传播,提供了比使用高斯源获得的更可靠的仿真结果。仿真结果表明,上述因素对单色仪的分辨能力有显著影响,突出了在设计和评估用于自由电子激光器的光栅单色仪时考虑真实光束特性的重要性。
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引用次数: 0
XASDB: a new database of experimental interactive X-ray absorption spectra. XASDB:一个新的实验交互x射线吸收光谱数据库。
IF 3 3区 物理与天体物理 Pub Date : 2025-09-01 Epub Date: 2025-07-31 DOI: 10.1107/S1600577525006174
Xueqi Song, Haodong Yao, Fei Zhan, Shuguang Chen, Lirong Zheng, Chenyan Ma, Lei Zheng, Haifeng Zhao

We present a dedicated and comprehensive database for experimental X-ray absorption spectroscopy (XAS) data, an integrated and user-friendly platform that combines spectrum visualization, raw data processing, spectrum matching and downloading, thereby offering a holistic solution for understanding XAS data. Leveraging the unique nature of XAS data, we have designed the MySQL table structure and developed professional plotting tools to present the data. Furthermore, the database - named XASDB - incorporates a variety of data processing tools, including data normalization as well as flexible searching and downloading options. A toolkit called XASMatch is integrated in the platform, enabling users to identify the most similar spectra within the database to their input spectra and rank with scores. An API interface is also provided to facilitate sharing data with other XAS databases and users. A total of 152 spectra measured at Beijing Synchrotron Radiation Facility for metals, oxides and minerals standards are included in the database. Applications integrated with artificial intelligence are advancing, since more high solution spectra with new standards will be available after operation of a high energy photon source to be commissioned at the end of the year.

我们提出了一个专门的、全面的实验x射线吸收光谱(XAS)数据数据库,一个集光谱可视化、原始数据处理、光谱匹配和下载为一体的、用户友好的集成平台,从而为理解XAS数据提供了一个整体的解决方案。利用XAS数据的独特性质,我们设计了MySQL表结构,并开发了专业的绘图工具来表示数据。此外,这个名为XASDB的数据库集成了各种数据处理工具,包括数据规范化以及灵活的搜索和下载选项。平台中集成了一个名为XASMatch的工具包,使用户能够识别数据库中与其输入光谱最相似的光谱,并按分数进行排序。还提供了API接口,以方便与其他XAS数据库和用户共享数据。该数据库收录了北京同步辐射设施测量的金属、氧化物和矿物标准的共152个光谱。与人工智能集成的应用正在推进,因为在年底投入使用的高能光子源运行后,将有更多具有新标准的高溶液光谱可用。
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引用次数: 0
Design and application of an electrochemical cell for operando X-ray diffraction and absorption studies for electrocatalysts. 电化学电池的设计与应用,用于电催化剂的x射线衍射和吸收研究。
IF 3 3区 物理与天体物理 Pub Date : 2025-09-01 Epub Date: 2025-08-15 DOI: 10.1107/S1600577525005612
Jiajun Chen, Zhenzhong Li, Huiyan Zeng, Liting Deng, Long Gu, Chao Wang, Chunzhen Yang, Dongbai Sun

The development of advanced catalysts for various electrochemical reactions necessitates precise characterization of their structure and dynamic evolution. This study introduces an innovative electrochemical cell tailored for operando X-ray characterizations, including X-ray diffraction (XRD) and X-ray absorption fine structure (XAFS). The cell features an adjustable aqueous electrolyte window to reduce X-ray signal absorption and an integrated flow system for efficient removal of gas products. This design enables simultaneous XRD and XAFS measurements in both fluorescence and transmission modes. Using LiCoO2 as a model oxygen evolution reaction catalyst, operando measurements reveal structural transformations during the reaction. This device will aid in the exploration of catalyst mechanisms and the development of high-performance catalysts.

各种电化学反应的先进催化剂的开发需要对其结构和动态演变进行精确的表征。本研究介绍了一种为operando x射线表征量身定制的创新电化学电池,包括x射线衍射(XRD)和x射线吸收精细结构(XAFS)。该电池具有可调节的水性电解质窗口,以减少x射线信号的吸收和集成的流动系统,以有效地去除气体产物。这种设计可以在荧光和透射模式下同时进行XRD和XAFS测量。使用LiCoO2作为模型析氧反应催化剂,operando测量揭示了反应过程中的结构转变。该装置将有助于探索催化剂机理和开发高性能催化剂。
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引用次数: 0
Achieving nanosecond time resolution with a two-dimensional X-ray detector. 利用二维x射线探测器实现纳秒级时间分辨率。
IF 3 3区 物理与天体物理 Pub Date : 2025-09-01 Epub Date: 2025-08-18 DOI: 10.1107/S1600577525006599
Yuriy Chushkin, Jonathan Correa, Alexandr Ignatenko, David Pennicard, Sabine Lange, Sergei Fridman, Sebastian Karl, Björn Senfftleben, Felix Lehmkühler, Fabian Westermeier, Heinz Graafsma, Marco Cammarata

The fastest pixel array X-ray detectors can record images with nanosecond resolution. This is accomplished by storing only a few images in in-pixel memory cells. In this study, we demonstrate nanosecond resolution over a large number of images by operating a prototype detector in an event driven mode. The performance of this mode is tested by measuring the Brownian dynamics of colloidal nanoparticles. We can achieve sub-100 ns time resolution and overcome the pixel dead time by applying a cross-correlation analysis of the neighboring pixels. The approach used in this work can be extended to study time-resolved fast processes with diffraction, scattering or imaging techniques.

最快的像素阵列x射线探测器可以记录纳秒级分辨率的图像。这是通过在像素内存储单元中存储少量图像来实现的。在本研究中,我们通过在事件驱动模式下操作原型探测器来演示纳秒级分辨率。通过测量胶体纳米颗粒的布朗动力学来测试该模式的性能。通过对相邻像素进行互相关分析,可以达到低于100 ns的时间分辨率,克服像素死区时间。这项工作中使用的方法可以扩展到用衍射、散射或成像技术研究时间分辨的快速过程。
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引用次数: 0
Design and implementation of a climate chamber for moisture sensitive nanotomography of biological samples. 生物样品湿敏感纳米层析成像气候室的设计与实现。
IF 3 3区 物理与天体物理 Pub Date : 2025-09-01 Epub Date: 2025-08-18 DOI: 10.1107/S1600577525006484
Martin Nopens, Imke Greving, Silja Flenner, Linnea Hesse, Jan Lüdtke, Michael Altgen, Gerald Koch, Johannes Beruda, Sabrina Heldner, Hannes Köhm, Sergej Kaschuro, Andrea Olbrich, Jakob Benedikt Mietner, Fabian Scheckenbach, Jördis Sieburg-Rockel, Andreas Krause

Deep understanding of the structural composition and growth of biological specimens is becoming increasingly important for the development of bio-based and sustainable material systems. Full-field nano-computed tomography is particularly suitable for this purpose as it allows for non-destructive 3D imaging at high spatial resolution. However, most biological samples are functionalized by water and respond sensitively to any changes in climate conditions, specifically relative humidity, by adjusting their material moisture content. To date, only a limited number of tomography instruments offer an in situ climate control option to users. These, however, are limited either by the range of relative humidity states, the long times required to change the climate state, or obstruction or attenuation of the beam. Here, the first fully automatized climate cell for in situ full-field nanotomography is presented. It has been designed, built and integrated at the nanotomography station at the P05 imaging beamline, operated by Hereon at the DESY storage ring PETRA III, Germany. The highly flexible and windowless design allows the humidity dependent swelling and shrinking of lignified plant cell walls to be studied in situ, using phase contrast nanotomography. The concept of this climate chamber can easily be integrated into other setups. It operates in the relative humidity range of 0-90% and can be controlled in a temperature range of 10-50°C. Climate conditions can be adjusted at any time, remotely from the control hutch by using a humidity generator. Results show that the developed setup maintains a stable climate during the entire duration of a tomographic scan at different humidities and does not obstruct the sample or hinder the imaging conditions. During the tomographic investigation the sample remains stable in the flow of the air stream and shows typical cell wall swelling and shrinking behaviour depending on the equilibrium moisture content. This new climate cell is now available to all users of the P05 nanotomography instrument for conditioning samples, serving a wide range of scientific applications.

深入了解生物标本的结构组成和生长对生物基和可持续材料系统的发展变得越来越重要。全场纳米计算机断层扫描特别适合这一目的,因为它允许在高空间分辨率下进行非破坏性3D成像。然而,大多数生物样品被水功能化,并对气候条件的任何变化做出敏感反应,特别是相对湿度,通过调整其材料水分含量。迄今为止,只有有限数量的断层扫描仪器为用户提供现场气候控制选项。然而,这些都受到相对湿度状态范围的限制,改变气候状态所需的长时间,或者光束的阻碍或衰减。在这里,第一个完全自动化的气候细胞现场现场纳米层析成像提出。它是在P05成像光束线上的纳米层析成像站设计、建造和集成的,由heron在德国的DESY存储环PETRA III运营。高度灵活和无窗的设计允许木质化植物细胞壁的湿度依赖性膨胀和收缩进行原位研究,使用相衬纳米断层扫描。这个气候室的概念可以很容易地集成到其他设置中。它工作在0-90%的相对湿度范围内,可控制在10-50℃的温度范围内。气候条件可以随时调整,远程控制箱使用湿度发生器。结果表明,所开发的装置在不同湿度的层析扫描整个过程中保持稳定的气候,并且不会阻碍样品或阻碍成像条件。在层析研究过程中,样品在气流中保持稳定,并表现出典型的细胞壁膨胀和收缩行为,这取决于平衡水分含量。这种新的气候细胞现在可供P05纳米断层扫描仪器的所有用户使用,用于调理样品,服务于广泛的科学应用。
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引用次数: 0
Heavy-element damage seeding in proteins under XFEL illumination. XFEL光照下蛋白质中的重元素损伤播种。
IF 3 3区 物理与天体物理 Pub Date : 2025-09-01 Epub Date: 2025-08-27 DOI: 10.1107/S1600577525005934
Spencer K Passmore, Alaric L Sanders, Andrew V Martin, Harry M Quiney

Serial femtosecond X-ray crystallography (SFX) captures the structure and dynamics of biological macromolecules at high spatial and temporal resolutions. The ultrashort pulse produced by an X-ray free-electron laser (XFEL) `outruns' much of the radiation damage that impairs conventional crystallography. However, the rapid onset of `electronic damage' due to ionization limits this benefit. Here, we distinguish the influence of different atomic species on the ionization of protein crystals by employing a plasma code that tracks the unbound electrons as a continuous energy distribution. The simulations show that trace quantities of heavy atoms (Z > 10) contribute a substantial proportion of global radiation damage by rapidly seeding electron ionization cascades. In a typical protein crystal, sulfur atoms and solvated salts induce a substantial fraction of light-atom ionization. In further modeling of various targets, global ionization peaks at photon energies roughly 2 keV above inner-shell absorption edges, where sub-2 keV photoelectrons ejected from these shells initiate ionization cascades that are briefer than the XFEL pulse. These results indicate that relatively small quantities of heavy elements can substantially affect global radiation damage in XFEL experiments.

连续飞秒x射线晶体学(SFX)在高空间和时间分辨率下捕获生物大分子的结构和动力学。由x射线自由电子激光器(XFEL)产生的超短脉冲“超越”了许多损害传统晶体学的辐射损伤。然而,由于电离引起的“电子损伤”的快速发作限制了这一益处。在这里,我们区分不同原子种类对蛋白质晶体电离的影响,采用等离子体代码,跟踪未束缚的电子作为一个连续的能量分布。模拟结果表明,痕量重原子(zbbb10)通过快速播种电子电离级联,对全球辐射损伤贡献了相当大的比例。在一个典型的蛋白质晶体中,硫原子和溶剂化盐诱导了相当一部分的光原子电离。在对各种目标的进一步建模中,全局电离在光子能量约为2kev的内壳吸收边缘处达到峰值,其中从这些壳层喷射出的低于2kev的光电子引发了比XFEL脉冲更短的电离级联。这些结果表明,相对少量的重元素可以显著影响XFEL实验中的整体辐射损伤。
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引用次数: 0
FoamQuant: a Python package for time-resolved 3D image quantification of cellular materials. FoamQuant:用于细胞材料的时间分辨3D图像定量的Python包。
IF 3 3区 物理与天体物理 Pub Date : 2025-09-01 Epub Date: 2025-08-22 DOI: 10.1107/S1600577525006629
Florian Schott, Benjamin Dollet, Stéphane Santucci, Christophe Raufaste, Rajmund Mokso

X-ray tomography is a well established technique for investigating three-dimensional bulk structures across scales, from macroscopic samples down to their microscopic constituents. The addition of a temporal dimension through dynamic, time-resolved acquisition results in four-dimensional datasets whose complexity often exceeds the processing capabilities of existing image analysis tools. To address the urgent need for a dedicated four-dimensional image analysis platform for cellular materials, we present FoamQuant-a free and open-source software package designed for batch processing and quantitative analysis of large time series of evolving cellular or foam-like materials. FoamQuant enables the extraction of key parameters such as liquid fraction (porosity), individual bubble (pore) volume and offers advanced characterization of mechanical properties, including elastic strain and stress fields as well as individual cell rearrangements. Its user-friendly, modular architecture is demonstrated through two case studies: (i) the orientation of plastic events in a flowing liquid foam, and (ii) bubble tracking in a coarsening albumin foam.

x射线断层扫描是一种成熟的技术,用于研究从宏观样品到微观成分的三维体结构。通过动态的、时间分辨的采集来增加时间维度会产生四维数据集,其复杂性往往超过现有图像分析工具的处理能力。为了解决对蜂窝材料专用四维图像分析平台的迫切需求,我们提出了foamquant -一个免费的开源软件包,用于批量处理和定量分析进化的蜂窝或泡沫状材料的大时间序列。FoamQuant能够提取关键参数,如液体分数(孔隙度),单个气泡(孔隙)体积,并提供先进的机械性能表征,包括弹性应变和应力场以及单个细胞重排。其用户友好的,模块化的架构是通过两个案例研究证明:(i)塑料事件的方向在流动的液体泡沫,(ii)气泡跟踪在粗化白蛋白泡沫。
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引用次数: 0
Evolution of macromolecular crystallography beamlines at the Swiss Light Source and SwissFEL. 瑞士光源和瑞士自由电子激光器下大分子晶体学光束线的演变。
IF 3 3区 物理与天体物理 Pub Date : 2025-09-01 Epub Date: 2025-07-14 DOI: 10.1107/S1600577525005016
Meitian Wang

This review highlights the development and evolution of three macromolecular crystallography (MX) beamlines at the Swiss Light Source (SLS) over the past two decades. We discuss key advancements in X-ray optics, detectors, goniometers, sample changers and MX methodology, emphasizing their impact on high-throughput and high-resolution structural biology. Our contributions are presented within the broader context of global efforts in synchrotron-based MX. Looking ahead, we explore the future experiments enabled by SLS 2.0 and new opportunities at SwissFEL to enhance experimental capabilities and drive scientific discoveries.

本文综述了近二十年来瑞士光源(SLS)下三种大分子晶体学(MX)光束线的发展和演变。我们讨论了x射线光学、探测器、测角仪、样品交换器和MX方法的关键进展,强调了它们对高通量和高分辨率结构生物学的影响。我们的贡献是在基于同步加速器的MX的全球努力的更广泛背景下提出的。展望未来,我们将探索SLS 2.0支持的未来实验以及瑞士自由电子实验室的新机遇,以提高实验能力并推动科学发现。
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引用次数: 0
期刊
Journal of Synchrotron Radiation
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