首页 > 最新文献

Annual Review of Virology最新文献

英文 中文
Tobacco Mosaic Virus and the History of Molecular Biology. 烟草花叶病毒与分子生物学的历史。
IF 11.3 1区 医学 Q1 VIROLOGY Pub Date : 2022-06-15 DOI: 10.1146/annurev-virology-100520-014520
A. Creager
The history of tobacco mosaic virus (TMV) includes many firsts in science, beginning with its being the first virus identified. This review offers an overview of a history of research on TMV, with an emphasis on its close connections to the emergence and development of molecular biology. Expected final online publication date for the Annual Review of Virology, Volume 9 is September 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
烟草花叶病毒(TMV)的历史包括许多科学上的第一次,从它是第一种被发现的病毒开始。这篇综述概述了TMV的研究历史,重点介绍了它与分子生物学的出现和发展的密切联系。《病毒学年度评论》第9卷预计最终在线出版日期为2022年9月。请参阅http://www.annualreviews.org/page/journal/pubdates用于修订估算。
{"title":"Tobacco Mosaic Virus and the History of Molecular Biology.","authors":"A. Creager","doi":"10.1146/annurev-virology-100520-014520","DOIUrl":"https://doi.org/10.1146/annurev-virology-100520-014520","url":null,"abstract":"The history of tobacco mosaic virus (TMV) includes many firsts in science, beginning with its being the first virus identified. This review offers an overview of a history of research on TMV, with an emphasis on its close connections to the emergence and development of molecular biology. Expected final online publication date for the Annual Review of Virology, Volume 9 is September 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.","PeriodicalId":48761,"journal":{"name":"Annual Review of Virology","volume":" ","pages":""},"PeriodicalIF":11.3,"publicationDate":"2022-06-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"46036709","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 6
The Ecology of Viral Emergence. 病毒出现的生态学。
IF 11.3 1区 医学 Q1 VIROLOGY Pub Date : 2022-06-15 DOI: 10.1146/annurev-virology-100120-015057
E. Holmes
The coronavirus disease 2019 (COVID-19) pandemic has had a profound impact on human health, economic well-being, and societal function. It is essential that we use this generational experience to better understand the processes that underpin the emergence of COVID-19 and other zoonotic diseases. Herein, I review the mechanisms that determine why and how viruses emerge in new hosts, as well as the barriers to this process. I show that traditional studies of virus emergence have an inherent anthropocentric bias, with disease in humans considered the inevitable outcome of virus emergence, when in reality viruses are integral components of a global ecosystem characterized by continual host jumping with humans also transmitting their viruses to other animals. I illustrate these points using coronaviruses, including severe acute respiratory syndrome coronavirus 2, as a case study. I also outline the potential steps that can be followed to help mitigate and prevent future pandemics, with combating climate change a central component. Expected final online publication date for the Annual Review of Virology, Volume 9 is September 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
2019冠状病毒病(新冠肺炎)大流行对人类健康、经济福祉和社会功能产生了深远影响。我们必须利用这一代人的经验来更好地理解新冠肺炎和其他人畜共患疾病出现的过程。在此,我回顾了决定病毒为什么以及如何在新宿主中出现的机制,以及这一过程的障碍。我表明,对病毒出现的传统研究具有固有的以人类为中心的偏见,人类疾病被认为是病毒出现的必然结果,而事实上,病毒是全球生态系统的组成部分,其特征是宿主不断跳跃,人类也将病毒传播给其他动物。我用冠状病毒,包括严重急性呼吸系统综合征冠状病毒2,作为一个案例研究来说明这些观点。我还概述了可以采取的潜在步骤,以帮助缓解和预防未来的流行病,其中应对气候变化是一个核心组成部分。《病毒学年度评论》第9卷预计最终在线出版日期为2022年9月。请参阅http://www.annualreviews.org/page/journal/pubdates用于修订估算。
{"title":"The Ecology of Viral Emergence.","authors":"E. Holmes","doi":"10.1146/annurev-virology-100120-015057","DOIUrl":"https://doi.org/10.1146/annurev-virology-100120-015057","url":null,"abstract":"The coronavirus disease 2019 (COVID-19) pandemic has had a profound impact on human health, economic well-being, and societal function. It is essential that we use this generational experience to better understand the processes that underpin the emergence of COVID-19 and other zoonotic diseases. Herein, I review the mechanisms that determine why and how viruses emerge in new hosts, as well as the barriers to this process. I show that traditional studies of virus emergence have an inherent anthropocentric bias, with disease in humans considered the inevitable outcome of virus emergence, when in reality viruses are integral components of a global ecosystem characterized by continual host jumping with humans also transmitting their viruses to other animals. I illustrate these points using coronaviruses, including severe acute respiratory syndrome coronavirus 2, as a case study. I also outline the potential steps that can be followed to help mitigate and prevent future pandemics, with combating climate change a central component. Expected final online publication date for the Annual Review of Virology, Volume 9 is September 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.","PeriodicalId":48761,"journal":{"name":"Annual Review of Virology","volume":"1 1","pages":""},"PeriodicalIF":11.3,"publicationDate":"2022-06-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"41997129","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 15
Shifting the Immune Memory Paradigm: Trained Immunity in Viral Infections. 改变免疫记忆模式:病毒感染中的训练免疫。
IF 11.3 1区 医学 Q1 VIROLOGY Pub Date : 2022-06-08 DOI: 10.1146/annurev-virology-091919-072546
E. Taks, S. Moorlag, M. Netea, J. van der Meer
Trained immunity is defined as the de facto memory characteristics induced in innate immune cells after exposure to microbial stimuli after infections or certain types of vaccines. Through epigenetic and metabolic reprogramming of innate immune cells after exposure to these stimuli, trained immunity induces an enhanced nonspecific protection by improving the inflammatory response upon restimulation with the same or different pathogens. Recent studies have increasingly shown that trained immunity can, on the one hand, be induced by exposure to viruses; on the other hand, when induced, it can also provide protection against heterologous viral infections. In this review we explore current knowledge on trained immunity and its relevance for viral infections, as well as its possible future uses. Expected final online publication date for the Annual Review of Virology, Volume 9 is September 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
训练免疫被定义为先天免疫细胞在感染或某些类型的疫苗暴露于微生物刺激后所诱导的事实上的记忆特征。暴露于这些刺激后,通过先天免疫细胞的表观遗传和代谢重编程,经过训练的免疫通过改善相同或不同病原体再刺激时的炎症反应,诱导增强的非特异性保护。最近的研究越来越多地表明,一方面,经过训练的免疫力可以通过接触病毒来诱导;另一方面,当诱导时,它也可以提供对异源病毒感染的保护。在这篇综述中,我们探讨了目前关于训练免疫及其与病毒感染的相关性的知识,以及它可能的未来用途。《病毒学年度评论》第9卷的最终在线出版日期预计为2022年9月。修订后的估计数请参阅http://www.annualreviews.org/page/journal/pubdates。
{"title":"Shifting the Immune Memory Paradigm: Trained Immunity in Viral Infections.","authors":"E. Taks, S. Moorlag, M. Netea, J. van der Meer","doi":"10.1146/annurev-virology-091919-072546","DOIUrl":"https://doi.org/10.1146/annurev-virology-091919-072546","url":null,"abstract":"Trained immunity is defined as the de facto memory characteristics induced in innate immune cells after exposure to microbial stimuli after infections or certain types of vaccines. Through epigenetic and metabolic reprogramming of innate immune cells after exposure to these stimuli, trained immunity induces an enhanced nonspecific protection by improving the inflammatory response upon restimulation with the same or different pathogens. Recent studies have increasingly shown that trained immunity can, on the one hand, be induced by exposure to viruses; on the other hand, when induced, it can also provide protection against heterologous viral infections. In this review we explore current knowledge on trained immunity and its relevance for viral infections, as well as its possible future uses. Expected final online publication date for the Annual Review of Virology, Volume 9 is September 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.","PeriodicalId":48761,"journal":{"name":"Annual Review of Virology","volume":" ","pages":""},"PeriodicalIF":11.3,"publicationDate":"2022-06-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"47164869","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 7
The Case for Studying New Viruses of New Hosts. 研究新宿主的新病毒的案例。
IF 11.3 1区 医学 Q1 VIROLOGY Pub Date : 2022-06-07 DOI: 10.1146/annurev-virology-100220-112915
M. Stenglein
Virology has largely focused on viruses that are pathogenic to humans or to the other species that we care most about. There is no doubt that this has been a worthwhile investment. But many transformative advances have been made through the in-depth study of relatively obscure viruses that do not appear on lists of prioritized pathogens. In this review, I highlight the benefits that can accrue from the study of viruses and hosts off the beaten track. I take stock of viral sequence diversity across host taxa as an estimate of the bias that exists in our understanding of host-virus interactions. I describe the gains that have been made through the metagenomic discovery of thousands of new viruses in previously unsampled hosts as well as the limitations of metagenomic surveys. I conclude by suggesting that the study of viruses that naturally infect existing and emerging model organisms represents an opportunity to push virology forward in useful and hard to predict ways.Expected final online publication date for the Annual Review of Virology, Volume 9 is September 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
病毒学主要关注对人类或我们最关心的其他物种具有致病性的病毒。毫无疑问,这是一项有价值的投资。但通过对未出现在优先病原体名单上的相对模糊的病毒进行深入研究,已经取得了许多变革性进展。在这篇综述中,我强调了对病毒和宿主的研究可以带来的好处。我对宿主分类群中的病毒序列多样性进行了评估,以估计我们对宿主-病毒相互作用的理解中存在的偏差。我描述了通过在以前未采样的宿主中发现数千种新病毒的宏基因组所取得的进展,以及宏基因组调查的局限性。最后,我建议,对自然感染现有和新兴模式生物的病毒的研究代表着一个机会,可以以有用且难以预测的方式推动病毒学的发展。《病毒学年度评论》第9卷预计最终在线出版日期为2022年9月。请参阅http://www.annualreviews.org/page/journal/pubdates用于修订估算。
{"title":"The Case for Studying New Viruses of New Hosts.","authors":"M. Stenglein","doi":"10.1146/annurev-virology-100220-112915","DOIUrl":"https://doi.org/10.1146/annurev-virology-100220-112915","url":null,"abstract":"Virology has largely focused on viruses that are pathogenic to humans or to the other species that we care most about. There is no doubt that this has been a worthwhile investment. But many transformative advances have been made through the in-depth study of relatively obscure viruses that do not appear on lists of prioritized pathogens. In this review, I highlight the benefits that can accrue from the study of viruses and hosts off the beaten track. I take stock of viral sequence diversity across host taxa as an estimate of the bias that exists in our understanding of host-virus interactions. I describe the gains that have been made through the metagenomic discovery of thousands of new viruses in previously unsampled hosts as well as the limitations of metagenomic surveys. I conclude by suggesting that the study of viruses that naturally infect existing and emerging model organisms represents an opportunity to push virology forward in useful and hard to predict ways.Expected final online publication date for the Annual Review of Virology, Volume 9 is September 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.","PeriodicalId":48761,"journal":{"name":"Annual Review of Virology","volume":" ","pages":""},"PeriodicalIF":11.3,"publicationDate":"2022-06-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"42517266","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 4
Crowning Touches in Positive-Strand RNA Virus Genome Replication Complex Structure and Function. Crowning涉及正链RNA病毒基因组复制复合体的结构和功能。
IF 11.3 1区 医学 Q1 VIROLOGY Pub Date : 2022-05-24 DOI: 10.1146/annurev-virology-092920-021307
M. Nishikiori, J. D. den Boon, Nuruddin Unchwaniwala, P. Ahlquist
Positive-strand RNA viruses, the largest genetic class of eukaryotic viruses, include coronaviruses and many other established and emerging pathogens. A major target for understanding and controlling these viruses is their genome replication, which occurs in virus-induced membrane vesicles that organize replication steps and protect double-stranded RNA intermediates from innate immune recognition. The structure of these complexes has been greatly illuminated by recent cryo-electron microscope tomography studies with several viruses. One key finding in diverse systems is the organization of crucial viral RNA replication factors in multimeric rings or crowns that among other functions serve as exit channels gating release of progeny genomes to the cytosol for translation and encapsidation. Emerging results suggest that these crowns serve additional important purposes in replication complex assembly, function, and interaction with downstream processes such as encapsidation. The findings provide insights into viral function and evolution and new bases for understanding, controlling, and engineering positive-strand RNA viruses. Expected final online publication date for the Annual Review of Virology, Volume 9 is September 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
正链RNA病毒是真核病毒中最大的遗传类别,包括冠状病毒和许多其他已建立和正在出现的病原体。了解和控制这些病毒的一个主要目标是它们的基因组复制,它发生在病毒诱导的膜囊泡中,组织复制步骤并保护双链RNA中间体免受先天免疫识别。最近对几种病毒的冷冻电子显微镜断层扫描研究极大地阐明了这些复合物的结构。在不同系统中的一个关键发现是在多聚体环或冠中组织关键的病毒RNA复制因子,这些因子和其他功能一起作为出口通道,门控子代基因组释放到胞质溶胶中进行翻译和包壳。新出现的结果表明,这些牙冠在复制复杂的组装、功能以及与下游过程(如包壳)的相互作用中具有额外的重要目的。这些发现为了解病毒的功能和进化提供了见解,并为理解、控制和工程化正链RNA病毒提供了新的基础。《病毒学年度评论》第9卷预计最终在线出版日期为2022年9月。请参阅http://www.annualreviews.org/page/journal/pubdates用于修订估算。
{"title":"Crowning Touches in Positive-Strand RNA Virus Genome Replication Complex Structure and Function.","authors":"M. Nishikiori, J. D. den Boon, Nuruddin Unchwaniwala, P. Ahlquist","doi":"10.1146/annurev-virology-092920-021307","DOIUrl":"https://doi.org/10.1146/annurev-virology-092920-021307","url":null,"abstract":"Positive-strand RNA viruses, the largest genetic class of eukaryotic viruses, include coronaviruses and many other established and emerging pathogens. A major target for understanding and controlling these viruses is their genome replication, which occurs in virus-induced membrane vesicles that organize replication steps and protect double-stranded RNA intermediates from innate immune recognition. The structure of these complexes has been greatly illuminated by recent cryo-electron microscope tomography studies with several viruses. One key finding in diverse systems is the organization of crucial viral RNA replication factors in multimeric rings or crowns that among other functions serve as exit channels gating release of progeny genomes to the cytosol for translation and encapsidation. Emerging results suggest that these crowns serve additional important purposes in replication complex assembly, function, and interaction with downstream processes such as encapsidation. The findings provide insights into viral function and evolution and new bases for understanding, controlling, and engineering positive-strand RNA viruses. Expected final online publication date for the Annual Review of Virology, Volume 9 is September 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.","PeriodicalId":48761,"journal":{"name":"Annual Review of Virology","volume":" ","pages":""},"PeriodicalIF":11.3,"publicationDate":"2022-05-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"43807803","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 6
The Life Cycle of the Vaccinia Virus Genome. 牛痘病毒基因组的生命周期。
IF 11.3 1区 医学 Q1 VIROLOGY Pub Date : 2022-05-18 DOI: 10.1146/annurev-virology-091919-104752
Matthew D. Greseth, P. Traktman
Poxviruses, of which vaccinia virus is the prototype, are a large family of double-stranded DNA viruses that replicate exclusively in the cytoplasm of infected cells. This physical and genetic autonomy from the host cell nucleus necessitates that these viruses encode most, if not all, of the proteins required for replication in the cytoplasm. In this review, we follow the life of the viral genome through space and time to address some of the unique challenges that arise from replicating a 195-kb DNA genome in the cytoplasm. We focus on how the genome is released from the incoming virion and deposited into the cytoplasm; how the endoplasmic reticulum is reorganized to form a replication factory, thereby compartmentalizing and helping to protect the replicating genome from immune sensors; how the cellular milieu is tailored to support high-fidelity replication of the genome; and finally, how newly synthesized genomes are faithfully and specifically encapsidated into new virions. Expected final online publication date for the Annual Review of Virology, Volume 9 is September 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
痘病毒是一大家族的双链DNA病毒,专门在受感染细胞的细胞质中复制,痘苗病毒是其原型。这种来自宿主细胞核的物理和遗传自主性要求这些病毒编码细胞质中复制所需的大部分(如果不是全部的话)蛋白质。在这篇综述中,我们通过时空追踪病毒基因组的生命,以解决在细胞质中复制195kb DNA基因组所带来的一些独特挑战。我们关注的是基因组是如何从进入的病毒粒子中释放出来并沉积到细胞质中的;内质网如何重组以形成复制工厂,从而划分并帮助保护复制基因组免受免疫传感器的影响;如何调整细胞环境以支持基因组的高保真复制;最后,新合成的基因组是如何被忠实而特异地包裹在新的病毒粒子中的。《病毒学年度评论》第9卷预计最终在线出版日期为2022年9月。请参阅http://www.annualreviews.org/page/journal/pubdates用于修订估算。
{"title":"The Life Cycle of the Vaccinia Virus Genome.","authors":"Matthew D. Greseth, P. Traktman","doi":"10.1146/annurev-virology-091919-104752","DOIUrl":"https://doi.org/10.1146/annurev-virology-091919-104752","url":null,"abstract":"Poxviruses, of which vaccinia virus is the prototype, are a large family of double-stranded DNA viruses that replicate exclusively in the cytoplasm of infected cells. This physical and genetic autonomy from the host cell nucleus necessitates that these viruses encode most, if not all, of the proteins required for replication in the cytoplasm. In this review, we follow the life of the viral genome through space and time to address some of the unique challenges that arise from replicating a 195-kb DNA genome in the cytoplasm. We focus on how the genome is released from the incoming virion and deposited into the cytoplasm; how the endoplasmic reticulum is reorganized to form a replication factory, thereby compartmentalizing and helping to protect the replicating genome from immune sensors; how the cellular milieu is tailored to support high-fidelity replication of the genome; and finally, how newly synthesized genomes are faithfully and specifically encapsidated into new virions. Expected final online publication date for the Annual Review of Virology, Volume 9 is September 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.","PeriodicalId":48761,"journal":{"name":"Annual Review of Virology","volume":" ","pages":""},"PeriodicalIF":11.3,"publicationDate":"2022-05-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"46175112","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 27
Understanding the Impacts of Bacteriophage Viruses: From Laboratory Evolution to Natural Ecosystems. 了解噬菌体病毒的影响:从实验室进化到自然生态系统。
IF 11.3 1区 医学 Q1 VIROLOGY Pub Date : 2022-05-18 DOI: 10.1146/annurev-virology-091919-075914
B. Koskella, C. A. Hernandez, Rachel M. Wheatley
Viruses of bacteriophages (phages) have broad effects on bacterial ecology and evolution in nature that mediate microbial interactions, shape bacterial diversity, and influence nutrient cycling and ecosystem function. The unrelenting impact of phages within the microbial realm is the result, in large part, of their ability to rapidly evolve in response to bacterial host dynamics. The knowledge gained from laboratory systems, typically using pairwise interactions between single-host and single-phage systems, has made clear that phages coevolve with their bacterial hosts rapidly, somewhat predictably, and primarily by counteradapting to host resistance. Recent advancement in metagenomics approaches, as well as a shifting focus toward natural microbial communities and host-associated microbiomes, is beginning to uncover the full picture of phage evolution and ecology within more complex settings. As these data reach their full potential, it will be critical to ask when and how insights gained from studies of phage evolution in vitro can be meaningfully applied to understanding bacteria-phage interactions in nature. In this review, we explore the myriad ways that phages shape and are themselves shaped by bacterial host populations and communities, with a particular focus on observed and predicted differences between the laboratory and complex microbial communities. Expected final online publication date for the Annual Review of Virology, Volume 9 is September 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
噬菌体病毒对自然界中的细菌生态学和进化有着广泛的影响,介导微生物相互作用,塑造细菌多样性,并影响营养循环和生态系统功能。噬菌体在微生物领域的持续影响在很大程度上是由于它们能够响应细菌宿主动力学而快速进化的结果。从实验室系统中获得的知识,通常使用单个宿主和单个噬菌体系统之间的成对相互作用,已经清楚地表明噬菌体与细菌宿主快速、可预测地共同进化,主要是通过对抗宿主抗性。宏基因组学方法的最新进展,以及对自然微生物群落和宿主相关微生物群的关注,开始揭示噬菌体在更复杂环境中进化和生态学的全貌。随着这些数据充分发挥其潜力,询问从体外噬菌体进化研究中获得的见解何时以及如何有意义地应用于理解自然界中细菌与噬菌体的相互作用将是至关重要的。在这篇综述中,我们探索了噬菌体由细菌宿主群体和群落塑造和自身塑造的无数方式,特别关注实验室和复杂微生物群落之间观察到和预测到的差异。《病毒学年度评论》第9卷预计最终在线出版日期为2022年9月。请参阅http://www.annualreviews.org/page/journal/pubdates用于修订估算。
{"title":"Understanding the Impacts of Bacteriophage Viruses: From Laboratory Evolution to Natural Ecosystems.","authors":"B. Koskella, C. A. Hernandez, Rachel M. Wheatley","doi":"10.1146/annurev-virology-091919-075914","DOIUrl":"https://doi.org/10.1146/annurev-virology-091919-075914","url":null,"abstract":"Viruses of bacteriophages (phages) have broad effects on bacterial ecology and evolution in nature that mediate microbial interactions, shape bacterial diversity, and influence nutrient cycling and ecosystem function. The unrelenting impact of phages within the microbial realm is the result, in large part, of their ability to rapidly evolve in response to bacterial host dynamics. The knowledge gained from laboratory systems, typically using pairwise interactions between single-host and single-phage systems, has made clear that phages coevolve with their bacterial hosts rapidly, somewhat predictably, and primarily by counteradapting to host resistance. Recent advancement in metagenomics approaches, as well as a shifting focus toward natural microbial communities and host-associated microbiomes, is beginning to uncover the full picture of phage evolution and ecology within more complex settings. As these data reach their full potential, it will be critical to ask when and how insights gained from studies of phage evolution in vitro can be meaningfully applied to understanding bacteria-phage interactions in nature. In this review, we explore the myriad ways that phages shape and are themselves shaped by bacterial host populations and communities, with a particular focus on observed and predicted differences between the laboratory and complex microbial communities. Expected final online publication date for the Annual Review of Virology, Volume 9 is September 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.","PeriodicalId":48761,"journal":{"name":"Annual Review of Virology","volume":" ","pages":""},"PeriodicalIF":11.3,"publicationDate":"2022-05-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"45644856","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 22
Natural Selection, Intracellular Bottlenecks of Virus Populations, and Viral Superinfection Exclusion. 自然选择、病毒群体的细胞内瓶颈和病毒重叠感染排除。
IF 11.3 1区 医学 Q1 VIROLOGY Pub Date : 2022-05-13 DOI: 10.1146/annurev-virology-100520-114758
Camila Perdoncini Carvalho, Ruifan Ren, Junping Han, F. Qu
Natural selection acts on cellular organisms by ensuring the genes responsible for an advantageous phenotype consistently reap the phenotypic advantage. This is possible because reproductive cells of these organisms are almost always haploid, separating the beneficial gene from its rival allele at every generation. How natural selection acts on plus-strand RNA viruses is unclear because these viruses frequently load host cells with numerous genome copies and replicate thousands of progeny genomes in each cell. Recent studies suggest that these viruses encode the Bottleneck, Isolate, Amplify, Select (BIAS) mechanism that blocks all but a few viral genome copies from replication, thus creating the environment in which the bottleneck-escaping viral genome copies are isolated from each other, allowing natural selection to reward beneficial mutations and purge lethal errors. This BIAS mechanism also blocks the genomes of highly homologous superinfecting viruses, thus explaining cellular-level superinfection exclusion. Expected final online publication date for the Annual Review of Virology, Volume 9 is September 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
自然选择通过确保负责有利表型的基因持续获得表型优势来作用于细胞生物体。这是可能的,因为这些生物的生殖细胞几乎总是单倍体,在每一代都将有益基因与其竞争等位基因分离。自然选择如何作用于正链RNA病毒尚不清楚,因为这些病毒经常在宿主细胞中装载大量基因组拷贝,并在每个细胞中复制数千个后代基因组。最近的研究表明,这些病毒编码瓶颈、分离、扩增、选择(BIAS)机制,该机制阻断了除少数病毒基因组拷贝外的所有病毒基因组拷贝的复制,从而创造了一种环境,在这种环境中,逃离瓶颈的病毒基因组拷贝相互分离,使自然选择能够奖励有益的突变并清除致命的错误。这种BIAS机制还阻断了高度同源的重叠感染病毒的基因组,从而解释了细胞水平的重叠感染排除。《病毒学年度评论》第9卷预计最终在线出版日期为2022年9月。请参阅http://www.annualreviews.org/page/journal/pubdates用于修订估算。
{"title":"Natural Selection, Intracellular Bottlenecks of Virus Populations, and Viral Superinfection Exclusion.","authors":"Camila Perdoncini Carvalho, Ruifan Ren, Junping Han, F. Qu","doi":"10.1146/annurev-virology-100520-114758","DOIUrl":"https://doi.org/10.1146/annurev-virology-100520-114758","url":null,"abstract":"Natural selection acts on cellular organisms by ensuring the genes responsible for an advantageous phenotype consistently reap the phenotypic advantage. This is possible because reproductive cells of these organisms are almost always haploid, separating the beneficial gene from its rival allele at every generation. How natural selection acts on plus-strand RNA viruses is unclear because these viruses frequently load host cells with numerous genome copies and replicate thousands of progeny genomes in each cell. Recent studies suggest that these viruses encode the Bottleneck, Isolate, Amplify, Select (BIAS) mechanism that blocks all but a few viral genome copies from replication, thus creating the environment in which the bottleneck-escaping viral genome copies are isolated from each other, allowing natural selection to reward beneficial mutations and purge lethal errors. This BIAS mechanism also blocks the genomes of highly homologous superinfecting viruses, thus explaining cellular-level superinfection exclusion. Expected final online publication date for the Annual Review of Virology, Volume 9 is September 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.","PeriodicalId":48761,"journal":{"name":"Annual Review of Virology","volume":" ","pages":""},"PeriodicalIF":11.3,"publicationDate":"2022-05-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"48854584","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 7
The Ups and Downs of an Out-of-the-Box Scientist with a Curious Mind. 一个具有好奇心的特立独行的科学家的起起落落。
IF 11.3 1区 医学 Q1 VIROLOGY Pub Date : 2022-05-05 DOI: 10.1146/annurev-virology-100520-013446
M. Roossinck
My early life was challenging, and not conducive to the study of science, but my first introduction to viruses was an epiphany for me. I spent the whole of my career dedicated to understanding viruses, driven largely by curiosity. This led me down many different avenues of study, and to work with many wonderful colleagues, most of whom remain friends. Some highlights of my career include the discovery of a mutualistic three-way symbiosis involving a virus, a fungus, and a plant; genetic mapping of a pathogenicity gene in tomato; uncovering a virus in 1,000-year-old corncobs; exploring virus biodiversity in wild plants; and establishing a system to use a fungal virus to understand the epidemiology of its host. Expected final online publication date for the Annual Review of Virology, Volume 9 is September 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
我早年的生活充满挑战,不利于科学研究,但我第一次接触病毒对我来说是一种顿悟。我的整个职业生涯都致力于了解病毒,主要是出于好奇心。这使我走上了许多不同的学习道路,并与许多优秀的同事一起工作,其中大多数人仍然是朋友。我职业生涯中的一些亮点包括:发现了一种涉及病毒、真菌和植物的互惠的三方共生关系;番茄一个致病基因的遗传定位在1000年前的玉米芯中发现一种病毒;野生植物病毒生物多样性研究并建立一个系统,利用真菌病毒来了解其宿主的流行病学。《病毒学年度评论》第9卷的最终在线出版日期预计为2022年9月。修订后的估计数请参阅http://www.annualreviews.org/page/journal/pubdates。
{"title":"The Ups and Downs of an Out-of-the-Box Scientist with a Curious Mind.","authors":"M. Roossinck","doi":"10.1146/annurev-virology-100520-013446","DOIUrl":"https://doi.org/10.1146/annurev-virology-100520-013446","url":null,"abstract":"My early life was challenging, and not conducive to the study of science, but my first introduction to viruses was an epiphany for me. I spent the whole of my career dedicated to understanding viruses, driven largely by curiosity. This led me down many different avenues of study, and to work with many wonderful colleagues, most of whom remain friends. Some highlights of my career include the discovery of a mutualistic three-way symbiosis involving a virus, a fungus, and a plant; genetic mapping of a pathogenicity gene in tomato; uncovering a virus in 1,000-year-old corncobs; exploring virus biodiversity in wild plants; and establishing a system to use a fungal virus to understand the epidemiology of its host. Expected final online publication date for the Annual Review of Virology, Volume 9 is September 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.","PeriodicalId":48761,"journal":{"name":"Annual Review of Virology","volume":" ","pages":""},"PeriodicalIF":11.3,"publicationDate":"2022-05-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"43042329","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Opportunities, Technology, and the Joy of Discovery. 机遇、技术和发现的乐趣。
IF 11.3 1区 医学 Q1 VIROLOGY Pub Date : 2022-04-01 DOI: 10.1146/annurev-virology-100520-012840
P. Spear
My grandparents were immigrants. My paternal grandfather was illiterate. Yet my parents were able to complete college and to become teachers. I had a conventional upbringing in a small town in Florida, graduating from high school in 1960. I was fortunate enough to graduate cum laude from Florida State University and to earn other credentials leading to faculty positions at outstanding institutions of higher education: the University of Chicago and Northwestern University. At a time when women were rarely the leaders of research groups, I was able to establish a well-funded research program and to make contributions to our understanding of viral entry into cells. My best research was done after I became confident enough to seek productive interactions with collaborators. I am grateful for the collaborators and collaborations that moved our field forward and for my trainees who have gone on to successes in many different careers. Expected final online publication date for the Annual Review of Virology, Volume 9 is September 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
我的祖父母是移民。我的祖父是文盲。然而,我的父母能够完成大学学业并成为教师。我在佛罗里达州的一个小镇接受传统的教育,1960年高中毕业。我很幸运以优异成绩从佛罗里达州立大学毕业,并获得了其他证书,从而在芝加哥大学和西北大学等杰出的高等教育机构担任教职。在女性很少成为研究小组领导者的时候,我能够建立一个资金充足的研究项目,并为我们理解病毒进入细胞做出贡献。我最好的研究是在我变得足够自信,寻求与合作者进行富有成效的互动之后完成的。我感谢推动我们领域向前发展的合作者和合作者,也感谢我的受训人员,他们在许多不同的职业生涯中取得了成功。《病毒学年度评论》第9卷预计最终在线出版日期为2022年9月。请参阅http://www.annualreviews.org/page/journal/pubdates用于修订估算。
{"title":"Opportunities, Technology, and the Joy of Discovery.","authors":"P. Spear","doi":"10.1146/annurev-virology-100520-012840","DOIUrl":"https://doi.org/10.1146/annurev-virology-100520-012840","url":null,"abstract":"My grandparents were immigrants. My paternal grandfather was illiterate. Yet my parents were able to complete college and to become teachers. I had a conventional upbringing in a small town in Florida, graduating from high school in 1960. I was fortunate enough to graduate cum laude from Florida State University and to earn other credentials leading to faculty positions at outstanding institutions of higher education: the University of Chicago and Northwestern University. At a time when women were rarely the leaders of research groups, I was able to establish a well-funded research program and to make contributions to our understanding of viral entry into cells. My best research was done after I became confident enough to seek productive interactions with collaborators. I am grateful for the collaborators and collaborations that moved our field forward and for my trainees who have gone on to successes in many different careers. Expected final online publication date for the Annual Review of Virology, Volume 9 is September 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.","PeriodicalId":48761,"journal":{"name":"Annual Review of Virology","volume":" ","pages":""},"PeriodicalIF":11.3,"publicationDate":"2022-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"44207769","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Annual Review of Virology
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1