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Numerical solution of the biological SIR model for COVID-19 with convergence analysis 基于收敛分析的COVID-19生物SIR模型数值解
IF 3.7 3区 计算机科学 Q2 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS Pub Date : 2025-09-17 DOI: 10.1016/j.jocs.2025.102704
Walid Remili , Wen-Xiu Ma
This study investigates the numerical solution of the biological Susceptible–Infectious–Recovered model for COVID-19 over extended time intervals using the shifted Chebyshev polynomial collocation method. Initially, the original problem is reformulated into a nonlinear Volterra integral equation for the susceptible population. The shifted Chebyshev polynomials are then employed to derive the numerical solution. A comprehensive convergence analysis of the collocation method is conducted to ensure the reliability and accuracy of the proposed approach. Finally, numerical simulations are performed for various parameter configurations that influence the system’s coefficients. Our method is compared with existing approaches, providing insights into the model’s dynamics under different conditions.
本文利用移位切比雪夫多项式搭配法研究了延长时间间隔的COVID-19生物易感-感染-恢复模型的数值解。首先,将原问题转化为敏感群体的非线性Volterra积分方程。然后利用移位的切比雪夫多项式推导出数值解。为了保证所提方法的可靠性和准确性,对配置方法进行了全面的收敛性分析。最后,对影响系统系数的各种参数配置进行了数值模拟。我们的方法与现有方法进行了比较,提供了不同条件下模型动力学的见解。
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引用次数: 0
Darcy-scale digital core models for rock properties upscaling and computational domain reduction 达西尺度数字岩心模型的岩石性质升级和计算域缩减
IF 3.7 3区 计算机科学 Q2 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS Pub Date : 2025-09-15 DOI: 10.1016/j.jocs.2025.102715
Denis Orlov, Batyrkhan Gainitdinov, Dmitry Koroteev
The rapid development of Digital Rock Physics (DRP) requires the elaboration of robust techniques for closing the gaps between different scales of rock studies (upscaling). The upscaling workflows are especially needed to support the applicability of DRP for heterogeneous rocks. Basically, DRP involves two primary stages: model construction and simulation of physical processes on the models created. For heterogeneous rocks, there is an inherent trade-off between the spatial resolution of the data and the representativeness of the model size. The primary objective of this study was to implement and test a technique for upscaling digital core models from microscale to macroscale, enabling the computation of rock properties while accounting for heterogeneity of various scales. The upscaling is based on establishing correlations between tomography data of different resolutions and transforming low-resolution tomography into a multi-class model according to the defined correlation. The convolutional neural network for high-resolution tomography data was considered as the optimal algorithm for transforming low-resolution tomography into a multi-class model. The output of the neural network was an upscaled model of lower resolution than the original tomography image. Each cell in the upscaled model belonged to one of several types of formation, whose generalized characteristics were determined on the basis of the analysis of high-resolution tomography data. To validate the upscaling technique, we constructed a digital model of a complex carbonate reservoir based on data from multi-scale microtomography (μCT). A Darcy-scale model has been used and validated as a multi-class model, enabling the computation of flows in pore samples of various scales. By incorporating diverse pore space structures as different classes in the Darcy-scale model, it is possible to preserve the substantial physical size of the model while enhancing its level of complexity.
数字岩石物理(DRP)的快速发展需要完善可靠的技术来缩小不同尺度岩石研究之间的差距(升级)。为了支持DRP对非均质岩石的适用性,特别需要升级工作流程。基本上,DRP包括两个主要阶段:模型构建和对所创建模型的物理过程进行仿真。对于非均质岩石,在数据的空间分辨率和模型尺寸的代表性之间存在固有的权衡。本研究的主要目标是实现并测试一种将数字岩心模型从微观尺度提升到宏观尺度的技术,从而在考虑各种尺度非均质性的同时计算岩石特性。该方法的基础是建立不同分辨率层析数据之间的相关性,并根据定义的相关性将低分辨率层析数据转化为多类模型。高分辨率层析成像数据的卷积神经网络被认为是将低分辨率层析成像转换为多类模型的最优算法。神经网络的输出是一个比原始断层扫描图像分辨率更低的升级模型。升级模型中的每个细胞都属于几种地层类型中的一种,其广义特征是在高分辨率层析成像数据分析的基础上确定的。为了验证该技术,基于多尺度微层析成像(μCT)数据,建立了复杂碳酸盐岩储层的数字模型。采用了达西尺度模型,并对其进行了多类模型验证,实现了不同尺度孔隙样品流动的计算。通过将不同的孔隙空间结构作为不同的类别纳入达西尺度模型,可以在保持模型实质物理尺寸的同时提高其复杂性。
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引用次数: 0
CKDTA: A chemical knowledge-enhanced framework for drug–target affinity prediction CKDTA:用于药物靶点亲和力预测的化学知识增强框架
IF 3.7 3区 计算机科学 Q2 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS Pub Date : 2025-09-15 DOI: 10.1016/j.jocs.2025.102706
Xingran Zhao , Yanbu Guo , Bingyi Wang , Weihua Li
Accurate drug–target affinity (DTA) prediction is a cornerstone of efficient drug discovery, as it directly accelerates the screening of potential therapeutic candidates, reduces the cost of preclinical experiments, and shortens the development cycle of new drugs. However, existing deep learning-based methods face two main challenges: (I) Purely data-driven approaches struggle to capture the functional semantics of molecules, such as the role of specific functional regions and chemical element properties in binding interactions, due to the lack of integration with chemical prior knowledge, leading to unreliable predictions; (II) the integration of topological structure from graphs and long-range dependencies from sequences is insufficient, often failing to capture complementary features, limiting the model’s generalization ability, especially for novel drugs or targets commonly encountered in early drug discovery . To address these issues, we propose CKDTA, a Chemical Knowledge Enhanced framework for Drug-Target Affinity prediction. Our framework introduces two key innovations: (1) a chemical knowledge-enhanced molecular modeling approach, which constructs a multi-layer molecular graph incorporating atom-level features, chemical element information, and functional regions, enabling the capture of functional semantics through a hierarchical attention mechanism, while leveraging chemical prior knowledge; (2) a co-attention module designed to optimize sequence interaction information by leveraging graph-based interaction data, compensating for the lack of spatial structural information in sequence data. This module fully exploits the topological structure of graphs and the long-range dependencies in sequences, capturing complementary features. Extensive experiments on benchmark datasets demonstrate that CKDTA outperforms state-of-the-art methods. Furthermore, cold-start experiments validate its generalizability, highlighting its potential for drug discovery applications.
准确的药物靶标亲和力(DTA)预测是高效药物发现的基石,因为它直接加速了潜在治疗候选药物的筛选,降低了临床前实验的成本,缩短了新药的开发周期。然而,现有的基于深度学习的方法面临两个主要挑战:(I)纯数据驱动的方法难以捕捉分子的功能语义,例如特定功能区和化学元素性质在结合相互作用中的作用,由于缺乏与化学先验知识的整合,导致预测不可靠;(II)图的拓扑结构与序列的远程依赖关系的整合不足,往往无法捕获互补特征,限制了模型的泛化能力,特别是对于新药或早期药物发现中常见的靶点。为了解决这些问题,我们提出了CKDTA,一个用于药物-靶点亲和力预测的化学知识增强框架。我们的框架引入了两个关键创新:(1)化学知识增强的分子建模方法,该方法构建了包含原子级特征、化学元素信息和功能区的多层分子图,从而能够通过分层注意机制捕获功能语义,同时利用化学先验知识;(2)协同关注模块,利用基于图的交互数据优化序列交互信息,弥补序列数据空间结构信息的不足。该模块充分利用图的拓扑结构和序列的远程依赖关系,捕捉互补特征。在基准数据集上进行的大量实验表明,CKDTA优于最先进的方法。此外,冷启动实验验证了其普遍性,突出了其在药物发现应用中的潜力。
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引用次数: 0
Approach to global path planning and optimization for mobile robots based on multi-local gravitational potential fields bias-P-RRT* 基于多局部重力势场bias-P-RRT*的移动机器人全局路径规划与优化方法
IF 3.7 3区 计算机科学 Q2 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS Pub Date : 2025-09-15 DOI: 10.1016/j.jocs.2025.102718
Leiwen Yuan , Jingwen Luo
The sampling-based method has strong environmental adaptability and probability completeness, providing an effective solution for mobile robot path planning. However, the conventional rapidly-exploring random trees (RRT) algorithm often presents slow convergence and inefficient search paths. In this sense, this paper proposes a mobile robot path planning and optimization algorithm based on P-RRT* that incorporates multi-local gravitational potential fields and bias sampling, i.e., multi-local gravitational potential fields Bias-P-RRT* (MLGPFB-P-RRT*). The algorithm adds a local gravitational field between the starting point and the target point to better guide the direction of random tree growth, and directly connects the center of the last local gravitational field to the target point to accelerate the convergence of the random tree at the target point. Meanwhile, the introduction of bias sampling based on local potential fields to optimize the generation quality of random points, thereby improving the generation position of new nodes and reducing the randomness of sampling for mobile robots in the workspace. Then, a collision detection method between sampling nodes and obstacles was developed, which can quickly determine the feasibility of the sampling path. Finally, the generated path is optimized and smoothed through pruning optimization and quadratic B-spline function. A series of simulation studies and mobile robot experiments demonstrate the superior performance of the proposed algorithm.
该方法具有较强的环境适应性和概率完备性,为移动机器人路径规划提供了有效的解决方案。然而,传统的快速探索随机树(RRT)算法往往存在收敛速度慢和搜索路径低效的问题。为此,本文提出了一种基于P-RRT*的移动机器人路径规划优化算法,该算法结合多局部重力势场和偏置采样,即多局部重力势场bias -P-RRT* (MLGPFB-P-RRT*)。算法在起始点和目标点之间增加一个局部引力场,更好地引导随机树的生长方向,并将最后一个局部引力场的中心直接连接到目标点,加速随机树在目标点的收敛。同时,引入基于局部势场的偏置采样,优化随机点的生成质量,从而提高新节点的生成位置,降低移动机器人在工作空间中采样的随机性。然后,提出了一种采样节点与障碍物之间的碰撞检测方法,可以快速确定采样路径的可行性。最后,通过剪枝优化和二次b样条函数对生成的路径进行优化和平滑。一系列的仿真研究和移动机器人实验证明了该算法的优越性能。
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引用次数: 0
Efficient numerical simulation of variable-order fractional diffusion processes with a memory kernel 具有记忆核的变阶分数扩散过程的高效数值模拟
IF 3.7 3区 计算机科学 Q2 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS Pub Date : 2025-09-12 DOI: 10.1016/j.jocs.2025.102705
Sabita Bera , Mausumi Sen , Sujit Nath
Diffusion equations are fundamental in modeling the transport of heat, mass, or contaminants in porous media. However, classical models often fail to capture the anomalous diffusion behavior inherent in heterogeneous and memory-dependent materials. To address this, we investigate a fractional diffusion integro-differential equation involving variable-order derivatives in both time and space, subject to suitable conditions. The solutions are shown to exist and be unique through the rigorous application of fixed-point theorems. A finite difference-based numerical scheme is formulated to handle the variable-order fractional operators and convolution-type integral terms efficiently. Stability analysis confirms the accuracy and robustness of the method. In addition, approximate solutions are computed for three representative cases:(i) constant-order fractional diffusion (α=constant), (ii) time-dependent order α(t), and (iii) fully variable-order α(x,t). By incorporating variable order dynamics and integro-differential structures, this work extends conventional models and provides a unified framework for simulating complex transport processes in porous media.
扩散方程是模拟多孔介质中热量、质量或污染物传输的基础。然而,经典模型往往不能捕捉到异质和记忆依赖材料固有的异常扩散行为。为了解决这个问题,我们研究了一个分数阶扩散积分微分方程,该方程在时间和空间上都包含变阶导数,并服从适当的条件。通过对不动点定理的严格应用,证明了解的存在性和唯一性。为了有效地处理变阶分数算子和卷积型积分项,提出了一种基于有限差分的数值格式。稳定性分析证实了该方法的准确性和鲁棒性。此外,计算了三种典型情况的近似解:(i)常阶分数扩散(α=常数),(ii)随时间变化的阶α(t)和(iii)完全变阶α(x,t)。通过结合变阶动力学和积分微分结构,这项工作扩展了传统模型,并为模拟多孔介质中的复杂输运过程提供了统一的框架。
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引用次数: 0
Numerical study of two-dimensional sediment transport using momentum-conserving staggered grid scheme 二维保动量交错网格输沙数值研究
IF 3.7 3区 计算机科学 Q2 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS Pub Date : 2025-09-11 DOI: 10.1016/j.jocs.2025.102714
Riski Kurniawan , Sri Redjeki Pudjaprasetya , Rani Sulvianuri
Sediment transport plays a crucial role in the evolution of bed morphology through deposition and erosion. This study presents numerical simulations of two-dimensional sediment transport induced by fluid flow. The fluid-sediment interaction is governed by a capacity model, i.e., the coupled system of shallow water and Exner equations, a simplification of more physically advanced non-capacity models. The system is solved using a momentum-conserving staggered grid (MCS) scheme. Model validation is performed using the Meyer-Peter and Müller (MPM) bedload transport formula, applied to experimental data from dam-break flows in various channel configurations. The proposed method successfully reproduces trends in the evolution of the water surface and quasi-steady sediment profiles. In general, the MCS scheme provides more accurate water level predictions than the numerical benchmark schemes. Although the predictions of maximum depths of deposition and erosion are less accurate, the overall results are consistent with those obtained from non-capacity models. Furthermore, the model is applied to the Kampar River estuary to simulate sediment transport due to the tidal bore.
泥沙输运在沉积和侵蚀作用下的河床形态演化中起着至关重要的作用。本文采用数值模拟的方法研究了流体流动对二维泥沙输移的影响。流体-沉积物相互作用由一个容量模型控制,即浅水和Exner方程的耦合系统,这是对物理上更先进的非容量模型的简化。该系统采用守恒动量交错网格(MCS)方案求解。模型验证使用Meyer-Peter和m ller (MPM)河床输运公式进行,并应用于各种渠道配置的溃坝流的实验数据。该方法成功地再现了水面和准稳定泥沙剖面的演变趋势。一般来说,MCS方案提供了比数值基准方案更准确的水位预测。虽然最大沉积和侵蚀深度的预测不太准确,但总体结果与非容量模型的结果一致。并将该模型应用于甘巴江河口,模拟了潮涌对泥沙的影响。
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引用次数: 0
A study on pest control models based on nonlinear threshold control 基于非线性阈值控制的害虫控制模型研究
IF 3.7 3区 计算机科学 Q2 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS Pub Date : 2025-09-11 DOI: 10.1016/j.jocs.2025.102694
Yongfeng Li , Leyan Liang , Zhong Zhao
The pest number trigger threshold strategy has been widely used in the control of pests in agricultural production. In this study, pest populations are managed by using an integrated nonlinear threshold function and a saturation function. The existence conditions of various equilibrium points and sliding sections in the system are derived. Theoretical analysis and numerical simulation results show the existence of boundary equilibrium bifurcations, tangency bifurcations and limit cycle bifurcations caused by discontinuous boundary. It is worth noting that persistence and non-smooth folding can be observed in the boundary equilibrium bifurcations. At the same time, because the nonlinear threshold control strategy is adopted in this study, the change of the sliding section of the model is more complicated. The numerical simulation results show that if there is an unstable focus in the model, a sliding homoclinic cycle will appear with the occurrence of boundary saddle point bifurcation, and then form a crossing limit cycle. The sensitivity analysis results of the system show that if the threshold level is too low, the control measures do not achieve the desired results. Too high threshold selection will cause unnecessary economic losses. Therefore, our results show that an appropriate threshold should be set to reduce economic losses while ensuring that the number of pests is in a lower stable state.
害虫数量触发阈值策略已广泛应用于农业生产中有害生物的防治。本研究采用非线性阈值函数和饱和函数相结合的方法对害虫种群进行管理。导出了系统各平衡点和滑动截面的存在条件。理论分析和数值模拟结果表明,边界不连续引起的边界平衡分岔、切线分岔和极限环分岔是存在的。值得注意的是,在边界平衡分岔中可以观察到持续性和非光滑折叠。同时,由于本研究采用了非线性阈值控制策略,使得模型滑动截面的变化更为复杂。数值模拟结果表明,当模型中存在不稳定焦点时,随着边界鞍点分岔的发生,将出现滑动同斜环,然后形成交叉极限环。系统的灵敏度分析结果表明,如果阈值水平过低,控制措施无法达到预期效果。过高的门槛选择会造成不必要的经济损失。因此,我们的研究结果表明,应设置适当的阈值,以减少经济损失,同时确保害虫数量处于较低的稳定状态。
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引用次数: 0
Hybrid nutcracker optimization algorithm for multi-objective energy scheduling in grid-connected microgrid systems 并网微网系统多目标能量调度的混合胡桃夹子优化算法
IF 3.7 3区 计算机科学 Q2 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS Pub Date : 2025-09-11 DOI: 10.1016/j.jocs.2025.102716
Yiwei Liu, Yinggan Tang, Changchun Hua
The growing demand for clean and sustainable energy has driven rapid advancements in hybrid microgrid systems to mitigate climate change and environmental degradation. This paper proposes a novel multi-objective scheduling framework for hybrid microgrids aimed at minimizing operational costs while maximizing environmental benefits. To efficiently solve this complex optimization problem, we introduce a Hybrid Nutcracker Optimization Algorithm (HNOA), which combines the recently developed Nutcracker Optimization Algorithm (NOA) with the Bat Algorithm (BAT). This hybridization enhances NOA’s exploration–exploitation balance and search capability, as demonstrated by rigorous validation on 12 benchmark functions. HNOA achieves superior accuracy and computational efficiency compared to several state-of-the-art metaheuristics. The proposed HNOA is then applied to solve the scheduling of a grid-connected hybrid microgrid under various scenarios to evaluate its performance. Simulation results indicate that the optimal microgrid configuration, consisting of PV/WT/turbine/diesel/battery, achieves an investment cost of 80,789.02 yuan. The findings of this study offer valuable insights for advancing renewable energy integration and promoting environmental sustainability.
对清洁和可持续能源日益增长的需求推动了混合微电网系统的快速发展,以缓解气候变化和环境退化。本文提出了一种新的混合微电网多目标调度框架,以最小化运行成本和最大化环境效益为目标。为了有效地解决这一复杂的优化问题,我们引入了一种混合胡桃夹子优化算法(HNOA),该算法将最新发展的胡桃夹子优化算法(NOA)与蝙蝠算法(Bat)相结合。通过对12个基准函数的严格验证,证明了这种杂交增强了NOA的勘探开发平衡和搜索能力。与几个最先进的元启发式相比,HNOA实现了优越的准确性和计算效率。将所提出的HNOA应用于不同场景下并网混合微电网的调度问题,评估其性能。仿真结果表明,PV/WT/汽轮机/柴油/蓄电池组成的最优微网配置投资成本为80789.02元。本研究结果为推动可再生能源整合和促进环境可持续性提供了有价值的见解。
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引用次数: 0
A cellular automaton towards structural balance—Long cycles of link dynamics 迈向结构平衡的元胞自动机-连结动力学的长周期
IF 3.7 3区 计算机科学 Q2 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS Pub Date : 2025-09-02 DOI: 10.1016/j.jocs.2025.102712
Malgorzata J. Krawczyk, Krzysztof Kułakowski
A cellular automaton is defined on a line graph of a fully connected network. The automaton rule drives the system to a structural balance in most cases. Here, we investigate cycles with special symmetries, the so-called ’perfect cycles’ Burda et al. (2022). Two new characteristics of the cycles are investigated, as potential markers of perfect cycles: an equivalence of sets of states attained after external damage of links, and the homogeneity of the distribution of phase shifts between local trajectories. Only the second characteristic works as a criterion of the perfectness of the cycles. The results can be useful for generating pseudorandom numbers.
元胞自动机是在一个全连通网络的线形图上定义的。在大多数情况下,自动机规则驱动系统达到结构平衡。在这里,我们研究了具有特殊对称性的循环,即所谓的“完美循环”,Burda等人(2022)。研究了循环的两个新特征,作为完美循环的潜在标志:链路外部损坏后获得的状态集的等价性,以及局部轨迹之间相移分布的均匀性。只有第二个特征可以作为循环是否完美的标准。其结果可用于生成伪随机数。
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引用次数: 0
A decomposition based imputation algorithm for long consecutive missing atmospheric pollution data and its application 一种基于分解的长时间连续缺失大气污染数据插值算法及其应用
IF 3.7 3区 计算机科学 Q2 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS Pub Date : 2025-09-01 DOI: 10.1016/j.jocs.2025.102697
Xinyi Wei , Hao Meng , Lizhen Shao , Dongmei Fu , Lingwei Ma , Dawei Zhang
With the intensification of environmental air pollution, the impact of air pollutants on both the ecological environment and human health has attracted widespread attention. However, due to the relatively late introduction of environmental monitoring systems, there were long consecutive missing values in early pollutant data. In this paper, we propose a decomposition-based imputation method for long consecutive missing pollution data. Firstly, wavelet coherence analysis is employed to investigate the periodic relationship between the pollution data and the relevant air data, decomposing them into periodic and non-periodic components. Then, machine learning and transfer learning are used to impute the periodic and non-periodic components, respectively. Furthermore, the effectiveness of the method is validated on artificially missing NO2 and SO2 concentration data from five regions of China. Comparison results show that the proposed method significantly outperforms some other imputation methods in the literature in terms of both mean absolute error and mean absolute percentage error. Finally, the proposed imputation method is applied in the study of accelerated aging of polycarbonate materials. Experimental results show that the predictive accuracy of the aging model is improved when using the imputed pollutant data.
随着环境大气污染的加剧,大气污染物对生态环境和人体健康的影响引起了人们的广泛关注。但由于环境监测系统引进较晚,早期污染物数据存在较长时间连续缺失值。本文提出了一种基于分解的长时间连续缺失污染数据归算方法。首先,利用小波相干分析研究污染数据与相关大气数据之间的周期关系,将其分解为周期分量和非周期分量;然后,利用机器学习和迁移学习分别对周期分量和非周期分量进行估算。最后,以中国5个地区人为缺失的NO2和SO2浓度数据为例,验证了该方法的有效性。对比结果表明,该方法在平均绝对误差和平均绝对百分比误差方面都明显优于文献中的其他方法。最后,将该方法应用于聚碳酸酯材料加速老化的研究。实验结果表明,使用输入的污染物数据,老化模型的预测精度得到了提高。
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引用次数: 0
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