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Sbno1 mediates cell-cell communication between neural stem cells and microglia through small extracellular vesicles. Sbno1 通过细胞外小泡介导神经干细胞和小胶质细胞之间的细胞间通信。
IF 6.1 2区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-09-29 DOI: 10.1186/s13578-024-01296-4
Yifan Zhang, Zhihan Zhu, Zhinuo Li, Jia Feng, Jun Long, Yushu Deng, Waqas Ahmed, Ahsan Ali Khan, Shiying Huang, Qingling Fu, Lukui Chen

Background: Neural stem cells (NSCs) play a crucial role in the progress of ischemic stroke. Research on zebrafish embryonic demonstrates an association between Strawberry Notch 1 (Sbno1) and central nervous system development. However, the regulation and underlying mechanism of Sbno1 in NSCs have not been studied yet. Here, we investigated the role and the mechanism of Sbno1 in NSCs development and the potential therapeutic value of Sbno1 in ischemic stroke.

Methods: Adeno-associated virus (AAV) was used for overexpression or knockdown of Sbno1 in vitro or in vivo. A mouse model of MCAO was established to evaluate the neuroprotective effects of AAV-Sbno1, including balance beam test, rotarod test, and strength evaluation. H&E and immunofluorescence assessed neuronal impairment. Western blot and RT-qPCR were used to detect the expression of Sbno1 and its downstream target genes. RNA-seq and western blot were performed to explore further molecular mechanisms by which Sbno1 promoted endogenous repair of NSCs and macrophages M2 polarization. CCK8 was conducted to assess the effects of Sbno1 on NSCs proliferation. The impact of Sbno1 on NSCs apoptosis was evaluated by flow cytometry. NSCs derived from small extracellular vesicles (sEV) were obtained using ultracentrifugation and identified through nanoparticle tracking analysis (NTA) and western blot analysis.

Results: Our results showed that Sbno1 is highly expressed in the central nervous system, which plays a crucial role in regulating the proliferation of NSCs through the PI3k-Akt-GSK3β-Wnt/β-catenin signaling pathway. In addition, with overexpression of Sbno1 in the hippocampus, post-stroke behavioral scores were superior to the wild-type mice, and immunofluorescence staining revealed an increased number of newly generated neurons. sEV released by NSCs overexpressing Sbno1 inhibited neuroinflammation, which mechanistically impaired the activation of the microglial NF-κB and MAPK signaling pathways.

Conclusions: Our studies indicate that sbno1 promotes the proliferation of NSCs and enhances endogenous repairing through the PI3k-Akt-GSK3β-Wnt/β-catenin signaling pathway. Additionally, NSCs overexpressing sbno1 improve ischemic stroke recovery and inhibit neuroinflammation after ischemia by sEV through the MAPK and NF-κB signaling pathways.

背景:神经干细胞(NSCs)在缺血性中风的进展过程中起着至关重要的作用。对斑马鱼胚胎的研究表明,草莓诺奇1(Sbno1)与中枢神经系统发育有关。然而,Sbno1 在 NSCs 中的调控及其内在机制尚未得到研究。在此,我们研究了Sbno1在NSCs发育中的作用和机制,以及Sbno1在缺血性脑卒中中的潜在治疗价值:方法:使用腺相关病毒(AAV)在体外或体内过表达或敲除 Sbno1。方法:利用腺相关病毒(AAV)在体外或体内过表达或敲除 Sbno1,建立 MCAO 小鼠模型,评估 AAV-Sbno1 的神经保护作用,包括平衡木测试、转体测试和力量评估。H&E和免疫荧光评估了神经元损伤情况。Western blot和RT-qPCR用于检测Sbno1及其下游靶基因的表达。通过RNA-seq和Western blot进一步探索Sbno1促进NSCs内源性修复和巨噬细胞M2极化的分子机制。CCK8评估了Sbno1对NSCs增殖的影响。流式细胞术评估了Sbno1对NSCs凋亡的影响。通过超速离心法获得来自小细胞外囊泡(sEV)的NSCs,并通过纳米颗粒追踪分析(NTA)和Western印迹分析进行鉴定:结果:我们的研究结果表明,Sbno1在中枢神经系统中高表达,它在通过PI3k-Akt-GSK3β-Wnt/β-catenin信号通路调节NSCs增殖中发挥着重要作用。此外,在海马中过表达Sbno1后,卒中后行为评分优于野生型小鼠,免疫荧光染色显示新生成的神经元数量增加。过表达Sbno1的NSCs释放的sEV抑制了神经炎症,从机制上损害了小胶质细胞NF-κB和MAPK信号通路的激活:我们的研究表明,sbno1可通过PI3k-Akt-GSK3β-Wnt/β-catenin信号通路促进NSCs增殖并增强内源性修复。此外,过表达 sbno1 的 NSCs 还能改善缺血性中风的恢复,并通过 MAPK 和 NF-κB 信号通路抑制缺血后 sEV 的神经炎症。
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引用次数: 0
Reading the m6A-encoded epitranscriptomic information in development and diseases. 读取发育和疾病中的 m6A 编码表观转录组信息。
IF 6.1 2区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-09-28 DOI: 10.1186/s13578-024-01293-7
Yunbing Chen, Ziyu Zhou, Yanxi Chen, Di Chen

N6-methyladenosine (m6A) represents the most prevalent internal and reversible modification on RNAs. Different cell types display their unique m6A profiles, which are determined by the functions of m6A writers and erasers. M6A modifications lead to different outcomes such as decay, stabilization, or transport of the RNAs. The m6A-encoded epigenetic information is interpreted by m6A readers and their interacting proteins. M6A readers are essential for different biological processes, and the defects in m6A readers have been discovered in diverse diseases. Here, we review the latest advances in the roles of m6A readers in development and diseases. These recent studies not only highlight the importance of m6A readers in regulating cell fate transitions, but also point to the potential application of drugs targeting m6A readers in diseases.

N6-甲基腺苷(m6A)是 RNA 上最常见的内部可逆修饰。不同类型的细胞显示出各自独特的 m6A 特征,这是由 m6A 写入器和擦除器的功能决定的。M6A 修饰会导致不同的结果,如 RNA 的衰变、稳定或运输。m6A编码的表观遗传信息由m6A阅读器及其相互作用的蛋白质解读。M6A 阅读器对不同的生物过程至关重要,而 m6A 阅读器的缺陷已在多种疾病中被发现。在此,我们回顾了有关 m6A 阅读器在发育和疾病中作用的最新进展。这些最新研究不仅强调了 m6A 阅读器在调控细胞命运转换中的重要性,还指出了针对 m6A 阅读器的药物在疾病中的潜在应用。
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引用次数: 0
Research progress and challenges of the PD-1/PD-L1 axis in gliomas. 胶质瘤中 PD-1/PD-L1 轴的研究进展与挑战。
IF 6.1 2区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-09-27 DOI: 10.1186/s13578-024-01305-6
Dong Jiacheng, Cui Jiayue, Guo Ying, Wang Shaohua, Liu Wenhui, Hong Xinyu

The emergence of programmed death-1 (PD-1) and programmed death ligand 1 (PD-L1) immunosuppressants provides new therapeutic directions for various advanced malignant cancers. At present, PD-1/PD-L1 immunosuppressants have made significant progress in clinical trials of some gliomas, but PD-1/PD-L1 inhibitors have not yet shown convincing clinical efficacy in gliomas. This article summarizes the research progress of the PD-1 /PD-L1 pathway in gliomas through the following three aspects. It mainly includes the complex expression levels and regulatory mechanisms of PD-1/PD-L1 in the glioma microenvironment, the immune infiltration in glioma immunosuppressive microenvironment, and research progress on the application of PD-1/PD-L1 immunosuppressants in clinical treatment trials for gliomas. This will help to understand the current treatment progress and future research directions better.

程序性死亡-1(PD-1)和程序性死亡配体1(PD-L1)免疫抑制剂的出现为各种晚期恶性癌症提供了新的治疗方向。目前,PD-1/PD-L1免疫抑制剂在一些胶质瘤的临床试验中取得了显著进展,但PD-1/PD-L1抑制剂在胶质瘤中尚未显示出令人信服的临床疗效。本文从以下三个方面总结了胶质瘤中PD-1/PD-L1通路的研究进展。主要包括PD-1/PD-L1在胶质瘤微环境中复杂的表达水平和调控机制、胶质瘤免疫抑制微环境中的免疫浸润以及PD-1/PD-L1免疫抑制剂在胶质瘤临床治疗试验中的应用研究进展。这将有助于更好地了解目前的治疗进展和未来的研究方向。
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引用次数: 0
Astaxanthin attenuates glucose-induced liver injury in largemouth bass: role of p38MAPK and PI3K/Akt signaling pathways. 虾青素可减轻葡萄糖诱导的大口鲈鱼肝损伤:p38MAPK 和 PI3K/Akt 信号通路的作用。
IF 6.1 2区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-09-19 DOI: 10.1186/s13578-024-01304-7
Zhihong Liao, Xuanshu He, Anqi Chen, Jian Zhong, Sihan Lin, Yucai Guo, Xin Cui, Baoyang Chen, Wei Zhao, Jin Niu

Background: Astaxanthin (ASX) has been documented to exert beneficial influence on various processes in fish. Largemouth bass (Micropterus salmoides) serves as a common model for studying glucose-induced liver disease, making it imperative to investigate the regulatory mechanisms underlying its liver health.

Methods: Largemouth bass were fed with a control diet (CON), a high carbohydrate diet (HC), or a HC diet supplemented astaxanthin (HCA) for 8-weeks, followed by the glucose tolerance test (GTT). Primary hepatocytes were treated with low glucose and high glucose combined with different concentrations of astaxanthin for 48 h. The histopathology, enzymology, transcriptomics, molecular biology and cell biology were combined to investigate the mechanism of liver injury.

Results: This study provides evidence for the protective effects of ASX against growth performance reduction and hepatic liver injure in largemouth bass fed HC diet. In GTT, HCA diet exhibited an improvement in glucose tolerance following glucose loading. Although HCA diet did not restore the expression of insulin resistance-related genes in livers at different time during the GTT, the addition of ASX in the long-term HC diet did improve the insulin resistance pathway by regulating the PTP1B/PI3K/Akt signaling pathway. Hepatic transcriptome analyses showed that ASX plays an essential role in the modulation of glucose homeostasis in response to treated with HC diet. In in vitro study, ASX treatment resulted in an exaltation in cell viability and a reduction in the rate of cell apoptosis and reactive oxygen species (ROS). Additionally, astaxanthin was observed to improve apoptosis induced by high-glucose via p38MAPK/bcl-2/caspase-3 signaling pathway.

Conclusions: Astaxanthin exhibited a protective effect against apoptosis by regulating p38MAPK/bcl-2/caspase-3 pathway, and ameliorated insulin resistance by activating the PTP1B/PI3K/Akt pathway. This study elucidated the mechanism of astaxanthin in the liver injury of largemouth bass from a new perspective and provided a new target for the treatment of insulin resistance.

背景:据记载,虾青素(ASX)对鱼类的各种过程产生有益影响。大口鲈鱼(Micropterus salmoides)是研究葡萄糖诱导肝病的常见模型,因此研究其肝脏健康的调节机制势在必行:方法:用对照饮食(CON)、高碳水化合物饮食(HC)或添加虾青素(HCA)的高碳水化合物饮食喂养大口鲈鱼 8 周,然后进行葡萄糖耐量试验(GTT)。原代肝细胞经低糖和高糖联合不同浓度虾青素处理48小时后,结合组织病理学、酶学、转录组学、分子生物学和细胞生物学研究肝损伤的机制:本研究证明了虾青素对大嘴鲈生长性能下降和肝损伤的保护作用。在 GTT 中,HCA 日粮在葡萄糖负荷后显示出葡萄糖耐量的改善。虽然在 GTT 期间的不同时间段,HCA 日粮并不能恢复肝脏中胰岛素抵抗相关基因的表达,但在长期 HC 日粮中添加 ASX 可通过调节 PTP1B/PI3K/Akt 信号通路来改善胰岛素抵抗通路。肝脏转录组分析表明,ASX在HC饮食治疗后的葡萄糖稳态调节中发挥了重要作用。在体外研究中,ASX处理可提高细胞活力,降低细胞凋亡率和活性氧(ROS)。此外,还观察到虾青素通过p38MAPK/bcl-2/caspase-3信号通路改善了高葡萄糖诱导的细胞凋亡:结论:虾青素通过调节p38MAPK/bcl-2/caspase-3通路对细胞凋亡具有保护作用,并通过激活PTP1B/PI3K/Akt通路改善胰岛素抵抗。该研究从一个新的角度阐明了虾青素在大口鲈肝损伤中的作用机制,为治疗胰岛素抵抗提供了一个新的靶点。
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引用次数: 0
The roles of OGT and its mechanisms in cancer OGT 在癌症中的作用及其机制
IF 7.5 2区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-09-16 DOI: 10.1186/s13578-024-01301-w
Xin Liu, Jing Wang, Yaoxian Xiang, Kangjie Wang, Dong Yan, Yingying Tong
O-linked-N-acetylglucosaminylation (O-GlcNAcylation) is a common and important post-translational modification (PTM) linking O-linked β-N-acetylglucosamine (O-GlcNAc) to serine and threonine residues in proteins. Extensive research indicates its impact on target protein stability, activity, and interactions. O-linked N-acetylglucosamine transferase (OGT) is a critical enzyme that catalyzes O-GlcNAc modification, responsible for adding O-GlcNAc to proteins. OGT and O-GlcNAcylation are overexpressed in many tumors and closely associated with tumor growth, invasion, metabolism, drug resistance, and immune evasion. This review delineates the biochemical functions of OGT and summarizes its effects and mechanisms in tumors. Targeting OGT presents a promising novel approach for treating human malignancies.
O-连锁-N-乙酰葡萄糖氨酰化(O-GlcNAcylation)是一种常见而重要的翻译后修饰(PTM),它将蛋白质中的 O-连锁β-N-乙酰葡萄糖胺(O-GlcNAc)与丝氨酸和苏氨酸残基连接起来。大量研究表明,它对目标蛋白质的稳定性、活性和相互作用都有影响。O- 链接 N-乙酰葡糖胺转移酶(OGT)是催化 O-GlcNAc 修饰的关键酶,负责将 O-GlcNAc 添加到蛋白质中。OGT和O-GlcNAcylation在许多肿瘤中过度表达,与肿瘤的生长、侵袭、代谢、耐药性和免疫逃避密切相关。本综述阐述了 OGT 的生化功能,并总结了其在肿瘤中的作用和机制。以 OGT 为靶点是治疗人类恶性肿瘤的一种前景广阔的新方法。
{"title":"The roles of OGT and its mechanisms in cancer","authors":"Xin Liu, Jing Wang, Yaoxian Xiang, Kangjie Wang, Dong Yan, Yingying Tong","doi":"10.1186/s13578-024-01301-w","DOIUrl":"https://doi.org/10.1186/s13578-024-01301-w","url":null,"abstract":"O-linked-N-acetylglucosaminylation (O-GlcNAcylation) is a common and important post-translational modification (PTM) linking O-linked β-N-acetylglucosamine (O-GlcNAc) to serine and threonine residues in proteins. Extensive research indicates its impact on target protein stability, activity, and interactions. O-linked N-acetylglucosamine transferase (OGT) is a critical enzyme that catalyzes O-GlcNAc modification, responsible for adding O-GlcNAc to proteins. OGT and O-GlcNAcylation are overexpressed in many tumors and closely associated with tumor growth, invasion, metabolism, drug resistance, and immune evasion. This review delineates the biochemical functions of OGT and summarizes its effects and mechanisms in tumors. Targeting OGT presents a promising novel approach for treating human malignancies.","PeriodicalId":49095,"journal":{"name":"Cell and Bioscience","volume":"52 1","pages":""},"PeriodicalIF":7.5,"publicationDate":"2024-09-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142263158","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Sex-specific hypothalamic neuropathology and glucose metabolism in an amyloidosis transgenic mouse model of Alzheimer’s disease 淀粉样变性转基因小鼠阿尔茨海默病模型的下丘脑神经病理学和糖代谢的性别特异性
IF 7.5 2区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-09-13 DOI: 10.1186/s13578-024-01295-5
Guibo Qi, Han Tang, Pifang Gong, Yitong Liu, Chenzhao He, Jianian Hu, Siying Kang, Liang Chen, Song Qin
Amyloid toxicity and glucose metabolic disorders are key pathological features during the progression of Alzheimer’s disease (AD). While the hypothalamus plays a crucial role in regulating systemic energy balance, the distribution of amyloid plaques in the preoptic, anterior, tuberal, and mammillary regions of the hypothalamus in AD mice, particularly across both sexes, remains largely unclear. Our ongoing research aims to explore hypothalamic neuropathology and glucose metabolic disturbances in a well-described APP/PS1 mouse model of AD. Immunocytochemical staining revealed that Old-AD-Female mice exhibited a greater hypothalamic Amyloid β (Aβ) burden than their Old-AD-Male counterparts, with the mammillary bodies showing the most severe accumulation. Analysis of ionized calcium binding adaptor molecule 1 (IBA1) immunoreactivity and Iba1 mRNA indicated differential microgliosis based on sex, while tanycytic territory and ZO-1 tight junction protein expression remained stable in AD mice. Moreover, sex-specific peripheral glucose metabolic parameters (random and fasting blood glucose) seemed to be exacerbated by age. Old AD mice of both sexes exhibited limited hypothalamic activation (c-Fos + cells) in response to blood glucose fluctuations. Hypothalamic Glut 1 expression decreased in young but increased in old female AD mice compared with age-matched male AD mice. Pearson correlation analysis further supported a negative correlation between hypothalamic Aβ load and random blood glucose in old AD groups of both genders, shedding light on the mechanisms underlying this amyloidosis mouse model. Aged APP/PS1 mice exhibit sex-specific hypothalamic neuropathology and differential glucose metabolism, highlighting distinct pathological mechanisms within each gender.
淀粉样蛋白毒性和糖代谢紊乱是阿尔茨海默病(AD)进展过程中的主要病理特征。虽然下丘脑在调节全身能量平衡方面起着至关重要的作用,但淀粉样蛋白斑块在AD小鼠下丘脑的视前区、前区、结节区和乳突区的分布,尤其是在男女小鼠中的分布,在很大程度上仍不清楚。我们正在进行的研究旨在探索已被充分描述的APP/PS1小鼠AD模型的下丘脑神经病理学和葡萄糖代谢紊乱。免疫细胞化学染色显示,老-AD-雌性小鼠的下丘脑淀粉样蛋白β(Aβ)负担比老-AD-雄性小鼠更大,其中乳腺体的堆积最为严重。对电离钙结合适配分子1(IBA1)免疫活性和IBA1 mRNA的分析表明,AD小鼠的微神经胶质增生因性别而异,而澹细胞区和ZO-1紧密连接蛋白的表达在AD小鼠中保持稳定。此外,性别特异性外周葡萄糖代谢参数(随机血糖和空腹血糖)似乎会随着年龄的增长而加剧。老龄雌雄AD小鼠对血糖波动的下丘脑激活(c-Fos + 细胞)均有限。与年龄匹配的雄性AD小鼠相比,年轻雌性AD小鼠的下丘脑Glut 1表达量减少,但老年AD小鼠的表达量增加。皮尔逊相关分析进一步证实,老年AD小鼠的下丘脑Aβ负荷与随机血糖之间存在负相关,从而揭示了这种淀粉样变性小鼠模型的内在机制。老年APP/PS1小鼠表现出性别特异性的下丘脑神经病理学和不同的葡萄糖代谢,突显了每种性别中不同的病理机制。
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引用次数: 0
New insights into the stromal interaction molecule 2 function and its impact on the immunomodulation of tumor microenvironment 基质相互作用分子 2 功能及其对肿瘤微环境免疫调节影响的新见解
IF 7.5 2区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-09-13 DOI: 10.1186/s13578-024-01292-8
Shishan Zhou, Shujie Liu, Anfeng Jiang, Zhiyuan Li, Chaojun Duan, Bin Li
Immune cells-enhanced immunotherapy exhibits unprecedented overall survival-prolongation even curable in some cancer patients. Although so, most of the patients show no response. Tumor microenvironment (TME) where immune cells settle down has multi-faceted influences, but usually creates an immunosuppressive niche that facilitating tumor cells escape from immune attack. The metabolites and malnutrition of TME exert enormous effects on the resident immune cells, but the underlying mechanism is largely unknown. The stromal interaction molecules 2 (STIM2) is an endoplasmic reticulum (ER) calcium (Ca2+) sensor to maintain Ca2+ homeostasis. Notably, the cytosol STIM2 C-terminus is long with various domains that are available for the combination or/and molecular modification. This distinct structure endows STIM2 with a high susceptibility to numerous permeable physico-chemical molecules or protein interactions. STIM2 and its variants are extensively expressed in various immune cells, especially in T immune cells. STIM2 was reported closely correlated with the function of immune cells via regulating Ca2+ signaling, energy metabolism and cell fitness. Herein, we sum the latest findings on the STIM2 structure, focusing on its distinct characteristics and profound effect on the regulation of Ca2+ homeostasis and multi-talented functionality. We also outline the advancements on the underlying mechanism how STIM2 anomalies influence the function of immune cells and on the turbulent expression or/and amenably modification of STIM2 within the tumor niches. Then we discuss the translation of these researches into antitumor approaches, emphasizing the potential of STIM2 as a therapeutic target for direct inhibition of tumor cells or more activation towards immune cells driving to flare TME. This review is an update on STIM2, aiming to rationalize the potential of STIM2 as a therapeutic target for immunomodulation, engaging immune cells to exert the utmost anti-tumor effect.
免疫细胞增强免疫疗法使一些癌症患者的总生存期得到了前所未有的延长,甚至可以治愈。尽管如此,大多数患者仍无反应。免疫细胞所在的肿瘤微环境(TME)具有多方面的影响,但通常会形成一个免疫抑制龛位,使肿瘤细胞逃脱免疫攻击。TME 中的代谢产物和营养不良会对常驻免疫细胞产生巨大影响,但其深层机制尚不清楚。基质相互作用分子 2(STIM2)是一种内质网(ER)钙(Ca2+)传感器,用于维持 Ca2+ 的平衡。值得注意的是,细胞质 STIM2 的 C 端很长,有各种结构域,可以进行组合或/和分子修饰。这种独特的结构使 STIM2 极易受到众多可渗透的物理化学分子或蛋白质相互作用的影响。STIM2 及其变体在各种免疫细胞中广泛表达,尤其是在 T 免疫细胞中。据报道,STIM2 通过调节 Ca2+ 信号传导、能量代谢和细胞活力,与免疫细胞的功能密切相关。在此,我们总结了有关 STIM2 结构的最新研究成果,重点介绍了其在调控 Ca2+ 平衡和多功能性方面的显著特征和深远影响。我们还概述了 STIM2 异常如何影响免疫细胞功能的内在机制,以及 STIM2 在肿瘤龛内的紊乱表达或/和可修饰性的研究进展。然后,我们讨论了将这些研究转化为抗肿瘤方法的问题,强调了 STIM2 作为治疗靶点的潜力,可直接抑制肿瘤细胞或进一步激活免疫细胞,推动 TME 的发展。本综述是关于 STIM2 的最新进展,旨在合理解释 STIM2 作为免疫调节治疗靶点的潜力,使免疫细胞发挥最大的抗肿瘤作用。
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引用次数: 0
Single‑cell RNA sequencing analysis of human embryos from the late Carnegie to fetal development 从卡内基晚期到胎儿发育期的人类胚胎单细胞 RNA 测序分析
IF 7.5 2区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-09-12 DOI: 10.1186/s13578-024-01302-9
Chengniu Wang, Xiaorong Wang, Wenran Wang, Yufei Chen, Hanqing Chen, Weizhen Wang, Taowen Ye, Jin Dong, Chenliang Sun, Xiaoran Li, Chunhong Li, Jiaying Li, Yong Wang, Xingmei Feng, Hongping Ding, Dawei Xu, Jianwu Shi
The cell development atlas of transition stage from late Carnegie to fetal development (7–9 weeks) remain unclear. It can be seen that the early period of human embryos (7–9 weeks) is a critical research gap. Therefore, we employed single‑cell RNA sequencing to identify cell types and elucidate differentiation relationships. The single‑cell RNA sequencing analysis determines eighteen cell clusters in human embryos during the 7–9 weeks period. We uncover two distinct pathways of cellular development and differentiation. Initially, mesenchymal progenitor cells differentiated into osteoblast progenitor cells and neural stem cells, respectively. Neural stem cells further differentiated into neurons. Alternatively, multipotential stem cells differentiated into adipocyte, hematopoietic stem cells and neutrophil, respectively. Additionally, COL1A2-(ITGA1 + ITGB1) mediated the cell communication between mesenchymal progenitor cells and osteoblast progenitor cells. NCAM1-FGFR1 facilitated the cell communication between mesenchymal progenitor cells and neural stem cells. Notably, NCAM1-NCAM1 as a major contributor mediated the cell communication between neural stem cells and neurons. Moreover, CGA-FSHR simultaneously mediated the communication between multipotential stem cells, adipocyte, hematopoietic stem cells and neutrophil. Distinct cell clusters activated specific transcription factors such as HIC1, LMX1B, TWIST1, and et al., which were responsible for their specific functions. These coregulators, such as HOXB13, VSX2, PAX5, and et al., may mediate cell development and differentiation in human embryos. We provide the cell development atlas for human embryos (7–9 weeks). Two distinct cell development and differentiation pathways are revealed.
从卡内基晚期到胎儿发育过渡阶段(7-9 周)的细胞发育图谱仍不清楚。由此可见,人类胚胎早期(7-9 周)是一个关键的研究空白。因此,我们采用单细胞 RNA 测序来确定细胞类型并阐明分化关系。单细胞 RNA 测序分析确定了人类胚胎 7-9 周期间的 18 个细胞群。我们发现了细胞发育和分化的两种不同途径。最初,间充质祖细胞分别分化为成骨细胞祖细胞和神经干细胞。神经干细胞进一步分化为神经元。另外,多潜能干细胞分别分化成脂肪细胞、造血干细胞和中性粒细胞。此外,COL1A2-(ITGA1 + ITGB1)介导了间充质祖细胞和成骨细胞祖细胞之间的细胞通讯。NCAM1-FGFR1促进了间充质祖细胞和神经干细胞之间的细胞通讯。值得注意的是,NCAM1-NCAM1 是神经干细胞与神经元之间细胞通讯的主要介导因子。此外,CGA-FSHR 还同时介导了多潜能干细胞、脂肪细胞、造血干细胞和中性粒细胞之间的交流。不同的细胞集群激活了特定的转录因子,如HIC1、LMX1B、TWIST1等,这些转录因子负责它们的特定功能。这些核心调节因子,如 HOXB13、VSX2、PAX5 等,可能会介导人类胚胎的细胞发育和分化。我们提供了人类胚胎(7-9 周)的细胞发育图谱。揭示了两种不同的细胞发育和分化途径。
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引用次数: 0
Advances in predictive biomarkers associated with immunotherapy in extensive-stage small cell lung cancer 与广泛期小细胞肺癌免疫疗法相关的预测性生物标记物研究进展
IF 7.5 2区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-09-12 DOI: 10.1186/s13578-024-01283-9
Tong Chen, Mingzhao Wang, Yanchao Chen, Yang Cao, Yutao Liu
Small cell lung cancer (SCLC) is a highly malignant and poor-prognosis cancer, with most cases diagnosed at the extensive stage (ES). Amidst a landscape marked by limited progress in treatment modalities for ES-SCLC over the past few decades, the integration of immune checkpoint inhibitors (ICIs) with platinum-based chemotherapy has provided a milestone approach for improving prognosis, emerging as the new standard for initial therapy in ES-SCLC. However, only a minority of SCLC patients can benefit from ICIs, which frequently come with varying degrees of immune-related adverse events (irAEs). Therefore, it is crucial to investigate predictive biomarkers to screen potential beneficiaries of ICIs, mitigate the risk of side effects, and improve treatment precision. This review summarized potential biomarkers for predicting ICI response in ES-SCLC, with a primary focus on markers sourced from tumor tissue or peripheral blood samples. The former mainly included PD-L1 expression, tumor mutational burden (TMB), along with cellular or molecular components related to the tumor microenvironment (TME) and antigen presentation machinery (APM), molecular subtypes of SCLC, and inflammatory gene expression profiles. Circulating biomarkers predominantly comprised circulating tumor DNA (ctDNA), circulating tumor cells (CTCs), cytokines, plasma autoantibodies, inflammation-related parameters, and blood TMB. We synthesized and analyzed the research progress of these potential markers. Notably, investigations into PD-L1 expression and TMB have been the most extensive, exhibiting preliminary predictive efficacy in salvage immunotherapy; however, consistent conclusions have yet to be reached across studies. Additionally, novel predictive markers developed based on TME composition, APM, transcriptomic and genomic features provide promising tools for precision immunotherapy. Circulating biomarkers offer the advantages of convenience, non-invasiveness, and a comprehensive reflection of tumor molecular characteristics. They may serve as alternative options for predicting immunotherapy efficacy in SCLC. However, there is a scarcity of studies, and the significant heterogeneity in research findings warrants attention.
小细胞肺癌(SCLC)是一种恶性程度高、预后差的癌症,大多数病例被诊断为广泛期(ES)。过去几十年来,ES-SCLC 的治疗方法进展有限,在这种情况下,免疫检查点抑制剂(ICIs)与铂类化疗的结合为改善预后提供了一种里程碑式的方法,成为 ES-SCLC 初始治疗的新标准。然而,只有少数 SCLC 患者能从 ICIs 中获益,而 ICIs 通常会带来不同程度的免疫相关不良反应(irAEs)。因此,研究预测性生物标志物以筛选ICIs的潜在受益者、降低副作用风险并提高治疗精准度至关重要。本综述总结了预测 ES-SCLC ICI 反应的潜在生物标志物,主要关注来自肿瘤组织或外周血样本的标志物。前者主要包括PD-L1表达、肿瘤突变负荷(TMB)、与肿瘤微环境(TME)和抗原递呈机制(APM)相关的细胞或分子成分、SCLC的分子亚型以及炎症基因表达谱。循环生物标记物主要包括循环肿瘤DNA(ctDNA)、循环肿瘤细胞(CTC)、细胞因子、血浆自身抗体、炎症相关参数和血液TMB。我们综合分析了这些潜在标记物的研究进展。值得注意的是,对 PD-L1 表达和 TMB 的研究最为广泛,在挽救性免疫疗法中显示出初步的预测功效;然而,各项研究尚未得出一致的结论。此外,基于 TME 组成、APM、转录组和基因组特征开发的新型预测标记物为精准免疫疗法提供了前景广阔的工具。循环生物标记物具有方便、无创和全面反映肿瘤分子特征等优点。它们可作为预测 SCLC 免疫疗法疗效的替代选择。然而,目前的研究还很匮乏,研究结果的显著异质性也值得关注。
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引用次数: 0
HBx promotes tumorigenicity through RRM2-mediated autophagy in hepatocellular carcinoma HBx通过RRM2介导的自噬作用促进肝细胞癌的致瘤性
IF 7.5 2区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-09-10 DOI: 10.1186/s13578-024-01298-2
Yaqun Li, Furan Wang, Zikai Geng, Tianye He, Yun Song, Jian Wu, Bin Wang
Hepatitis B virus (HBV) infection can exacerbate liver disease progression through multiple mechanisms, eventually leading to hepatocellular carcinoma (HCC). HBV-encoded oncogene X protein (HBx), a key regulatory protein of HBV infection, serves as a positive regulator of hepatocarcinogenesis. The indispensability of the M2 subunit of ribonucleotide-diphosphate reductase (RRM2) lies in its role in facilitating DNA replication and repair processes. In our previous investigation, it was postulated that the gene RRM2 exhibits elevated expression levels in several categories of malignant tumors, particularly in HBV-related HCC. Additionally, it was observed that RRM2 is present within protein complexes that are centered on HBx. In the present investigation, the objective of this work was to investigate the potential relationship between the elevated expression of RRM2 in HBV-related HCC and the influence of HBx on this expression. The study attempted to determine the specific mechanism by which RRM2 is implicated in the promotion of hepatocarcinogenesis by HBx. There have been multiple scholarly proposals suggesting that the induction of autophagy by HBx is a significant intermediary factor in the development of HCC. However, the precise carcinogenic function of HBx-induced autophagy remains a subject of debate. This work initially investigated the impact of suppressing cellular autophagy on the malignant biological behaviors of HBx-promoted cells using an in vitro cellular model. The findings revealed that the suppression of cellular autophagy partially disrupted the oncogenic effects of HBx. In light of this, we proceeded to conduct more investigations into the regulatory association between RRM2 and HBx-induced autophagy in the upstream-downstream context. Our data indicate that HBx proteins increase the expression of RRM2. Suppression of RRM2 expression not only hinders HBx-induced autophagy, but also worsens the cellular G1/S blockage and reduces the HBx-induced malignant growth of hepatocellular carcinoma tumors, while stimulating apoptosis. Therefore, we hypothesised that RRM2 is a potential downstream target of HBx-induced hepatocarcinogenesis, and mining the oncogenic mechanism of RRM2 is significant in exploring the preventive treatment of HBV-related HCC.
乙型肝炎病毒(HBV)感染可通过多种机制加剧肝病进展,最终导致肝细胞癌(HCC)。乙型肝炎病毒编码的癌基因 X 蛋白(HBx)是乙型肝炎病毒感染的关键调节蛋白,是肝癌发生的正向调节因子。核糖核苷酸二磷酸还原酶(RRM2)的 M2 亚基在促进 DNA 复制和修复过程中起着不可或缺的作用。在我们之前的研究中,推测 RRM2 基因在几类恶性肿瘤中的表达水平升高,尤其是在 HBV 相关的 HCC 中。此外,我们还观察到 RRM2 存在于以 HBx 为中心的蛋白复合物中。本研究的目的是探讨 RRM2 在 HBV 相关 HCC 中的高表达与 HBx 对这种表达的影响之间的潜在关系。研究试图确定 RRM2 与 HBx 促进肝癌发生的具体机制。有多种学术建议认为,HBx 诱导自噬是 HCC 发生的重要中间因素。然而,HBx诱导自噬的确切致癌功能仍存在争议。本研究利用体外细胞模型初步研究了抑制细胞自噬对 HBx 促发细胞恶性生物学行为的影响。研究结果表明,抑制细胞自噬可部分破坏 HBx 的致癌作用。有鉴于此,我们进而对 RRM2 与 HBx 诱导的自噬之间在上下游背景下的调控关联进行了更多研究。我们的数据表明,HBx 蛋白会增加 RRM2 的表达。抑制 RRM2 的表达不仅会阻碍 HBx 诱导的自噬,还会加重细胞 G1/S 阻滞,降低 HBx 诱导的肝癌肿瘤的恶性生长,同时刺激细胞凋亡。因此,我们推测RRM2是HBx诱导肝癌发生的潜在下游靶点,挖掘RRM2的致癌机制对探索HBV相关HCC的预防治疗具有重要意义。
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