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A novel self-inhaled nicotine exposure system in murine models reveals age-dependent metabolic effects of nicotine. 一种新的自吸入尼古丁暴露系统在小鼠模型中揭示了尼古丁的年龄依赖性代谢效应。
IF 6.2 2区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-09-26 DOI: 10.1186/s13578-025-01473-z
Xu Xu, Hailan Liu, Meng Yu, Qingzhuo Liu, Yongxiang Li, Yue Deng, Yuxue Yang, Jingjing Cheng, Yutian Liu, Mengjie Wang, Xing Fang, Longlong Tu, Olivia Z Ginnard, Kristine M McDermott, Darah Threat, Fuhui Wang, Meixin Sun, Xinming Liu, Jiamin Qiu, Xi Wu, Jinjing Jian, Tong Zhou, Megan E Burt, Sanika V Jossy, Junying Han, Chunmei Wang, Yongjie Yang, Yong Xu, Yuhan Shi

Background: Nicotine is known to influence metabolism and body weight, yet existing murine models of nicotine exposure often fail to replicate human smoking behaviors accurately. To address this gap, we designed a cost-effective, self-administered nicotine inhalation system that allows mice to voluntarily inhale nicotine vapor generated from e-liquid.

Results: Using this system, we investigated the metabolic effects of nicotine exposure in adult and adolescent mice. Adult mice exposed to nicotine vapor for 10 days exhibited significant weight loss, which was rapidly regained upon cessation, paralleling human smoking patterns. In contrast, adolescent mice did not lose weight during nicotine exposure but experienced increased fat mass accumulation after cessation. These results highlight critical age-dependent differences in nicotine's metabolic effects and challenge the common perception that nicotine aids in weight control among adolescents.

Conclusions: Our novel e-liquid-based inhalation model provides a valuable tool for studying nicotine's physiological and behavioral effects, with implications for understanding smoking-related health risks and addiction mechanisms.

背景:已知尼古丁会影响新陈代谢和体重,但现有的尼古丁暴露小鼠模型往往不能准确地复制人类吸烟行为。为了解决这一差距,我们设计了一种具有成本效益的、自我管理的尼古丁吸入系统,该系统允许小鼠自愿吸入电子烟液产生的尼古丁蒸气。结果:利用该系统,我们研究了尼古丁暴露对成年和青春期小鼠的代谢影响。成年小鼠暴露在尼古丁蒸气中10天,体重明显减轻,戒烟后迅速恢复,与人类吸烟模式相似。相比之下,青春期小鼠在尼古丁暴露期间体重没有减轻,但在戒烟后脂肪堆积增加。这些结果突出了尼古丁代谢作用的关键年龄依赖性差异,并挑战了尼古丁有助于青少年体重控制的普遍看法。结论:我们的新型电子烟液吸入模型为研究尼古丁的生理和行为效应提供了一个有价值的工具,对了解吸烟相关的健康风险和成瘾机制具有重要意义。
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引用次数: 0
PINK1 functions in mitophagy and mitochondrial homeostasis during mice oocyte maturation. PINK1在小鼠卵母细胞成熟过程中参与线粒体自噬和线粒体稳态。
IF 6.2 2区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-09-26 DOI: 10.1186/s13578-025-01460-4
Shiwei Wang, Xuan Wu, Mengmeng Zhang, Yixiao Zhu, Yajun Guo, Shuang Song, Shenming Zeng

Background: As a serine/threonine kinase, PINK1 (PTEN-induced putative kinase 1) is widely expressed in mammalian tissues and cells, especially in the female reproductive system. However, its role in meiotic oocytes remains obscure. Here, we report that murine oocytes overexpressing Pink1 are unable to completely progress through meiosis.

Results: In the present study, we found that PINK1 protein levels in aged oocytes showed a substantial increase. Importantly, we revealed that murine oocytes overexpressing Pink1 are unable to completely progress through meiosis. This leads to inadequate mitochondrial redistribution, an elevated reactive oxygen species (ROS) level, severely disrupted spindle/chromosome organization, and abnormal mitophagy. Furthermore, we noted that elevated Pink1 expression significantly compromises the developmental ability of the mouse early embryo. In addition, we revealed that RAB8A activity is a key factor for PINK1-mediated mitophagy in old oocytes and active guanosine triphosphate (GTP)-bound state RAB8A could partially rescue the quality of aged oocytes by promoting the formation of autolysosome.

Conclusions: Collectively, our data display critical functions for PINK1 in meiotic progression and mitochondrial homeostasis in murine oocytes, and RAB8A activity is required for PINK1-mediated mitophagy in senescent oocytes.

背景:PINK1 (pten诱导的推定激酶1)是一种丝氨酸/苏氨酸激酶,在哺乳动物组织和细胞中广泛表达,尤其是在雌性生殖系统中。然而,其在减数分裂卵母细胞中的作用尚不清楚。在这里,我们报道过表达Pink1的小鼠卵母细胞不能完全通过减数分裂进行。结果:在本研究中,我们发现衰老卵母细胞中PINK1蛋白水平明显升高。重要的是,我们发现过表达Pink1的小鼠卵母细胞不能完全进行减数分裂。这导致线粒体再分配不足,活性氧(ROS)水平升高,纺锤体/染色体组织严重破坏,线粒体自噬异常。此外,我们注意到Pink1表达的升高会显著损害小鼠早期胚胎的发育能力。此外,我们发现RAB8A活性是衰老卵母细胞中pink1介导的有丝分裂的关键因素,活性鸟苷三磷酸(GTP)结合状态RAB8A可以通过促进自溶酶体的形成来部分挽救衰老卵母细胞的质量。结论:总的来说,我们的数据显示了PINK1在小鼠卵母细胞减数分裂进程和线粒体稳态中的关键功能,RAB8A活性是PINK1介导的衰老卵母细胞线粒体自噬所必需的。
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引用次数: 0
M1-BMDMs with Wnt5a deletion attenuate liver fibrosis by suppression of Wnt5a/Frizzled 2 axis in hepatic progenitors. Wnt5a缺失的m1 - bmdm通过抑制肝祖细胞中的Wnt5a/ frizzled2轴来减轻肝纤维化。
IF 6.2 2区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-08-30 DOI: 10.1186/s13578-025-01467-x
Fei-Fei Xing, Dan-Yang Wang, Yan-Nan Xu, Xin-Rui Zheng, Shi-Hao Zhang, Meng-Yao Zong, Jun-Yi Zhan, De-Xin Wang, Wei Liu, Jia-Mei Chen, Gao-Feng Chen, Ping Liu, Cheng-Hai Liu, Yong-Ping Mu
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引用次数: 0
Enriched environment inhibits GLT-1 ubiquitination by downregulating SMURF1 to attenuate ischemic brain injury induced excitotoxicity. 富集环境通过下调SMURF1抑制GLT-1泛素化,减轻缺血性脑损伤引起的兴奋毒性。
IF 6.2 2区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-08-28 DOI: 10.1186/s13578-025-01457-z
Yi Zhang, Wen Liu, Tao Huang, Lingling Liu, Xiuping Chen
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引用次数: 0
Biological functions and clinical implications of the CMPK2 across multisystemic diseases. CMPK2在多系统疾病中的生物学功能和临床意义
IF 6.2 2区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-08-27 DOI: 10.1186/s13578-025-01466-y
Jia Li, Qing Liu, Jie Yang, Ziyi Yang, Mingxin Zhang, Jie Zhang, Chao Sun

Cytidine/Uridine monophosphate kinase 2 (CMPK2) is a crucial enzyme responsible for the phosphorylation of nucleotides, specifically converting cytidine monophosphate (CMP) and uridine monophosphate (UMP) into their respective diphosphates, known as cytidine diphosphate (CDP) and uridine diphosphate (UDP). Recent studies have demonstrated that CMPK2 plays a pivotal role in multiple pathophysiological processes, such as cellular nucleotide metabolism, energy homeostasis, and inflammatory response. Dysregulation of CMPK2 has been implicated in a variety of pathologies, including viral infections, neurodegenerative diseases, and autoimmune disorders. Despite its biological significance and interventive potential, knowledge gaps remain with respect to CMPK2, in particular, the precise molecular mechanism and mechanical basis through which it contributes to the onset and progression of underlying diseases. In this regard, this narrative review aims to provide an overview concerning the biological functions of CMPK2, shed light on its involvement in disease pathogenesis alongside clinical relevance, and ultimately highlight potential therapeutic strategies to target CMPK2 across multisystemic disorders.

胞苷/尿苷单磷酸激酶2 (CMPK2)是负责核苷酸磷酸化的关键酶,特别是将单磷酸胞苷(CMP)和单磷酸尿苷(UMP)转化为各自的二磷酸,即胞苷二磷酸(CDP)和尿苷二磷酸(UDP)。最近的研究表明,CMPK2在细胞核苷酸代谢、能量稳态和炎症反应等多种病理生理过程中起着关键作用。CMPK2的失调与多种病理有关,包括病毒感染、神经退行性疾病和自身免疫性疾病。尽管具有生物学意义和干预潜力,但在CMPK2方面的知识差距仍然存在,特别是在其促进潜在疾病发生和进展的精确分子机制和机械基础方面。在这方面,本文旨在概述CMPK2的生物学功能,阐明其在疾病发病机制和临床相关性中的作用,并最终强调针对CMPK2治疗多系统疾病的潜在治疗策略。
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引用次数: 0
Sex-biased transcriptome in in vitro produced bovine early embryos. 性别偏向转录组在体外产生的牛早期胚胎。
IF 6.2 2区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-08-27 DOI: 10.1186/s13578-025-01459-x
Meihong Shi, Guangsheng Li, Hannah Marie Araujo, Angie S Lee, Jingzhi Zhang, Yoke Lee Lee, Soon Hon Cheong, Jingyue Ellie Duan

Background: Morphologic sex differences between males and females typically emerge after the primordial germ cell migration and gonad formation, although sex is determined at fertilization based on chromosome composition. A key debated sexual difference is the embryonic developmental rate, with in vitro produced male embryos often developing faster. However, the molecular mechanisms driving early embryonic sex differences remain unclear.

Results: To investigate the transcriptional sex difference during early development, in vitro produced bovine blastocysts were collected and sexed by PCR. A significant male-biased development is consistently observed in expanded blastocysts. Ultra-low input RNA-seq analysis identified 837 DEGs, 1555 significantly sex-biased differential alternative splicing (AS), and 1151 differentially expressed isoforms (DEIs). Among all of the DEGs, there were 231 upregulated and 606 downregulated in males. Functional enrichment analysis revealed male-biased DEGs were associated with metabolic regulation, whereas female-biased DEGs were related to female gonad development, sex differentiation, inflammatory pathways, and TGF-beta signaling. Comparing X chromosome and autosome expression ratio, we found that female-biased DEGs contributed to the higher X-linked gene dosage, a phenomenon not observed in male embryos. Moreover, we identified the sex-biased transcription factors and RNA-bind proteins, including pluripotent factors such as SOX21 and PRDM14, and splicing factors FMR1 and HNRNPH2. Additionally, we revealed that the significantly sex-biased differential AS were predominantly skipped exons, and they could be mapped to 906 genes, with 59 overlapping with DEGs enriched in metabolic and autophagy pathways. By incorporating novel isoforms from long reads sequencing, the sex-biased DEIs were associated with 1017 genes. Functional analysis showed that female-biased DEIs were involved in the negative regulation of transcriptional activity, while male-biased DEIs were related to energy metabolism. Furthermore, we identified sex-biased differential exon usage in DENND1B, DIS3L2, DOCK11, IL1RAPL2, and ZRSR2Y, indicating their sex-specific regulation in early embryo development.

Conclusion: This study provided a comprehensive analysis of transcriptome differences between male and female bovine blastocysts, integrating sex-biased gene expression, alternative splicing, and isoform dynamics. Our findings indicate that enriched metabolism processes in male embryos may contribute to the faster developmental pace, providing insights into sex-specific regulatory mechanisms during early embryogenesis.

背景:两性在形态上的性别差异通常出现在原始生殖细胞迁移和性腺形成之后,尽管性别是在受精时根据染色体组成决定的。一个备受争议的关键性别差异是胚胎发育速度,体外培养的男性胚胎通常发育得更快。然而,导致早期胚胎性别差异的分子机制仍不清楚。结果:收集体外培养的牛囊胚,采用PCR方法对其进行性别鉴定,以研究早期发育过程中的转录性别差异。在膨大的囊胚中一直观察到明显的雄性偏向性发育。超低输入RNA-seq分析鉴定出837个基因,1555个显著性别偏倚的差异选择性剪接(AS)和1151个差异表达异构体(DEIs)。在所有的deg中,男性有231个基因上调,606个基因下调。功能富集分析显示,男性偏倚的deg与代谢调节有关,而女性偏倚的deg与女性性腺发育、性别分化、炎症途径和tgf - β信号传导有关。比较X染色体和常染色体的表达比例,我们发现女性偏向的deg导致了更高的X连锁基因剂量,这一现象在男性胚胎中没有观察到。此外,我们还鉴定了性别偏向的转录因子和rna结合蛋白,包括多能因子如SOX21和PRDM14,剪接因子FMR1和HNRNPH2。此外,我们发现显著性别偏向的差异AS主要是被跳过的外显子,它们可以被定位到906个基因,其中59个与代谢和自噬途径中富集的deg重叠。通过整合来自长reads测序的新异构体,性别偏倚的dei与1017个基因相关。功能分析表明,雌性偏倚的DEIs参与转录活性的负调控,而雄性偏倚的DEIs与能量代谢有关。此外,我们在DENND1B、DIS3L2、DOCK11、IL1RAPL2和ZRSR2Y中发现了性别偏倚的差异外显子使用,表明它们在早期胚胎发育中的性别特异性调控。结论:本研究综合分析了雄性和雌性牛囊胚的转录组差异,整合了性别偏倚基因表达、选择性剪接和异构体动力学。我们的研究结果表明,男性胚胎中丰富的代谢过程可能有助于更快的发育速度,为早期胚胎发生过程中性别特异性调节机制提供了见解。
{"title":"Sex-biased transcriptome in in vitro produced bovine early embryos.","authors":"Meihong Shi, Guangsheng Li, Hannah Marie Araujo, Angie S Lee, Jingzhi Zhang, Yoke Lee Lee, Soon Hon Cheong, Jingyue Ellie Duan","doi":"10.1186/s13578-025-01459-x","DOIUrl":"10.1186/s13578-025-01459-x","url":null,"abstract":"<p><strong>Background: </strong>Morphologic sex differences between males and females typically emerge after the primordial germ cell migration and gonad formation, although sex is determined at fertilization based on chromosome composition. A key debated sexual difference is the embryonic developmental rate, with in vitro produced male embryos often developing faster. However, the molecular mechanisms driving early embryonic sex differences remain unclear.</p><p><strong>Results: </strong>To investigate the transcriptional sex difference during early development, in vitro produced bovine blastocysts were collected and sexed by PCR. A significant male-biased development is consistently observed in expanded blastocysts. Ultra-low input RNA-seq analysis identified 837 DEGs, 1555 significantly sex-biased differential alternative splicing (AS), and 1151 differentially expressed isoforms (DEIs). Among all of the DEGs, there were 231 upregulated and 606 downregulated in males. Functional enrichment analysis revealed male-biased DEGs were associated with metabolic regulation, whereas female-biased DEGs were related to female gonad development, sex differentiation, inflammatory pathways, and TGF-beta signaling. Comparing X chromosome and autosome expression ratio, we found that female-biased DEGs contributed to the higher X-linked gene dosage, a phenomenon not observed in male embryos. Moreover, we identified the sex-biased transcription factors and RNA-bind proteins, including pluripotent factors such as SOX21 and PRDM14, and splicing factors FMR1 and HNRNPH2. Additionally, we revealed that the significantly sex-biased differential AS were predominantly skipped exons, and they could be mapped to 906 genes, with 59 overlapping with DEGs enriched in metabolic and autophagy pathways. By incorporating novel isoforms from long reads sequencing, the sex-biased DEIs were associated with 1017 genes. Functional analysis showed that female-biased DEIs were involved in the negative regulation of transcriptional activity, while male-biased DEIs were related to energy metabolism. Furthermore, we identified sex-biased differential exon usage in DENND1B, DIS3L2, DOCK11, IL1RAPL2, and ZRSR2Y, indicating their sex-specific regulation in early embryo development.</p><p><strong>Conclusion: </strong>This study provided a comprehensive analysis of transcriptome differences between male and female bovine blastocysts, integrating sex-biased gene expression, alternative splicing, and isoform dynamics. Our findings indicate that enriched metabolism processes in male embryos may contribute to the faster developmental pace, providing insights into sex-specific regulatory mechanisms during early embryogenesis.</p>","PeriodicalId":49095,"journal":{"name":"Cell and Bioscience","volume":"15 1","pages":"123"},"PeriodicalIF":6.2,"publicationDate":"2025-08-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12392601/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144975847","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Retraction Note: Long non-coding RNA CASC15 promotes melanoma progression by epigenetically regulating PDCD4. 备注:长链非编码RNA cas15通过表观遗传调节PDCD4促进黑色素瘤的进展。
IF 6.2 2区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-08-26 DOI: 10.1186/s13578-025-01462-2
Yakun Yin, Bin Zhao, Dongqin Li, Guangwen Yin
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引用次数: 0
Spinal cord ischemia reperfusion injury induces cuproptosis in neurons. 脊髓缺血再灌注损伤诱导神经元铜突。
IF 6.2 2区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-08-21 DOI: 10.1186/s13578-025-01463-1
Lei Xie, Hang Wu, Qiuping He, Weipeng Shi, Xiao Xiao, Tengbo Yu

Background: Spinal cord ischemia reperfusion injury (SCIRI) is a serious disease that can result in irreversible neuronal damage, leading to the loss of sensory and motor function. Cuproptosis, a novel form of regulated cell death, has been studied in various diseases. However, the role and mechanism of cuproptosis in SCIRI remain to be elucidated.

Results: The results of transcriptome analysis showed significant downregulation of ATP7B, which regulates copper ion efflux. Concurrently, another key cuproptosis-related gene, FDX1, was significantly altered. Thus, we performed qPCR and Western blot assays in vivo and in vitro to detect changes in cuproptosis-related genes. The results indicated that cuproptosis was indeed activated by SCIRI or OGD/R. Moreover, immunofluorescence/immunohistochemitry staining and neuronal activity tests were consistent with the above results. Furthermore, we also proved that ammonium tetrathiomolybdate, a copper chelator and cuproptosis inhibitor, could not only ameliorate neuronal damage and promote neuronal survival but also improve lower limb motor dysfunction.

Conclusions: SCIRI caused ATP7B downregulation, which blocked copper ion efflux, leading to copper ion accumulation, DLAT oligomerization, degradation of iron-sulfur cluster proteins and ultimately cuproptosis in neurons.

背景:脊髓缺血再灌注损伤(SCIRI)是一种严重的疾病,可导致不可逆的神经元损伤,导致感觉和运动功能丧失。铜质增生是一种新的细胞死亡形式,已在多种疾病中得到研究。然而,铜突起在SCIRI中的作用和机制仍有待阐明。结果:转录组分析结果显示,调控铜离子外排的ATP7B显著下调。同时,另一个关键的铜形体相关基因FDX1也发生了显著改变。因此,我们在体内和体外进行了qPCR和Western blot检测铜裂相关基因的变化。结果表明,SCIRI或OGD/R确实激活了铜突起。此外,免疫荧光/免疫组织化学染色和神经元活性测试与上述结果一致。此外,我们还证明了铜螯合剂和铜还原抑制剂四硫钼酸铵不仅可以改善神经元损伤和促进神经元存活,还可以改善下肢运动功能障碍。结论:SCIRI引起ATP7B下调,阻断铜离子外排,导致铜离子积累、DLAT寡聚、铁硫簇蛋白降解,最终导致神经元铜突起。
{"title":"Spinal cord ischemia reperfusion injury induces cuproptosis in neurons.","authors":"Lei Xie, Hang Wu, Qiuping He, Weipeng Shi, Xiao Xiao, Tengbo Yu","doi":"10.1186/s13578-025-01463-1","DOIUrl":"10.1186/s13578-025-01463-1","url":null,"abstract":"<p><strong>Background: </strong>Spinal cord ischemia reperfusion injury (SCIRI) is a serious disease that can result in irreversible neuronal damage, leading to the loss of sensory and motor function. Cuproptosis, a novel form of regulated cell death, has been studied in various diseases. However, the role and mechanism of cuproptosis in SCIRI remain to be elucidated.</p><p><strong>Results: </strong>The results of transcriptome analysis showed significant downregulation of ATP7B, which regulates copper ion efflux. Concurrently, another key cuproptosis-related gene, FDX1, was significantly altered. Thus, we performed qPCR and Western blot assays in vivo and in vitro to detect changes in cuproptosis-related genes. The results indicated that cuproptosis was indeed activated by SCIRI or OGD/R. Moreover, immunofluorescence/immunohistochemitry staining and neuronal activity tests were consistent with the above results. Furthermore, we also proved that ammonium tetrathiomolybdate, a copper chelator and cuproptosis inhibitor, could not only ameliorate neuronal damage and promote neuronal survival but also improve lower limb motor dysfunction.</p><p><strong>Conclusions: </strong>SCIRI caused ATP7B downregulation, which blocked copper ion efflux, leading to copper ion accumulation, DLAT oligomerization, degradation of iron-sulfur cluster proteins and ultimately cuproptosis in neurons.</p>","PeriodicalId":49095,"journal":{"name":"Cell and Bioscience","volume":"15 1","pages":"120"},"PeriodicalIF":6.2,"publicationDate":"2025-08-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12372359/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144975862","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The role of the striatin family proteins in hippo signaling and cellular regulation. 纹状蛋白家族蛋白在河马信号传导和细胞调控中的作用。
IF 6.2 2区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-08-19 DOI: 10.1186/s13578-025-01461-3
Yarden Shor-Nareznoy, Michal Caspi, Yan Lender, Amnon Wittenstein, Arad Soffer, Hanin Elias, Natalie Zelikson, Rana Masri, Rose Jbara, David C Pallas, Metsada Pasmanik-Chor, Chen Luxenburg, Rina Rosin-Arbesfeld

The striatin family proteins, striatin, SG2NA, and zinedin, belong to the calmodulin-binding WD-40 repeat protein group and are components of the striatin interacting phosphatase and kinase (STRIPAK) complex. These proteins are known for their roles as scaffold proteins, facilitating various cellular pathways, and regulating cell-cell interactions and signaling mechanisms. The observation that Striatin is expressed in cell junctions, suggests a potential role in maintaining cell integrity and communication. Here, we used shRNA technology to examine the biological significance of the striatin family proteins. This approach allowed us to modulate their expression levels and observe the effects on cellular processes. Our results suggest that the striatin family members affect the Hippo signaling pathway by protecting phosphorylated YAP (pYAP) from proteasomal degradation, thus decreasing the expression of Hippo target genes. This regulation impacts key cellular processes, such as cell migration and proliferation. RNA sequencing analyses of keratinocytes and fibroblasts depleted of striatin proteins enabled the identification of novel gene sets affected by the modulation of striatin expression and provided insights into the broader impact of striatin proteins and their roles in various cellular pathways.

纹状蛋白家族蛋白,纹状蛋白,SG2NA和zinedin,属于钙调蛋白结合的WD-40重复蛋白组,是纹状蛋白相互作用磷酸酶和激酶(STRIPAK)复合物的组成部分。这些蛋白被认为是支架蛋白,促进各种细胞通路,调节细胞间相互作用和信号机制。观察到纹状蛋白在细胞连接处表达,表明其在维持细胞完整性和通讯方面的潜在作用。在这里,我们使用shRNA技术来检测纹状蛋白家族蛋白的生物学意义。这种方法使我们能够调节它们的表达水平,并观察对细胞过程的影响。我们的研究结果表明,纹状蛋白家族成员通过保护磷酸化的YAP (pYAP)免受蛋白酶体降解,从而降低Hippo靶基因的表达,从而影响Hippo信号通路。这种调控影响关键的细胞过程,如细胞迁移和增殖。缺失纹状蛋白的角质形成细胞和成纤维细胞的RNA测序分析能够鉴定受纹状蛋白表达调节影响的新基因集,并为纹状蛋白的广泛影响及其在各种细胞通路中的作用提供见解。
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引用次数: 0
Mitochondrial echoes in the bloodstream: decoding ccf-mtDNA for the early detection and prognosis of hepatocellular carcinoma. 血液中的线粒体回声:解码ccf-mtDNA用于肝细胞癌的早期检测和预后。
IF 6.2 2区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-08-12 DOI: 10.1186/s13578-025-01456-0
Yu-De Chu, Wei-Ting Chen, Wey-Ran Lin, Ming-Wei Lai, Chau-Ting Yeh

Hepatocellular carcinoma (HCC), the most common primary liver cancer, remains a major global health burden due to its high recurrence, late diagnosis, and limited prognostic tools. While imaging and treatment modalities have advanced, there is an urgent need for reliable, noninvasive biomarkers to facilitate early detection, therapeutic monitoring, and outcome prediction. Circulating cell-free mitochondrial DNA (ccf-mtDNA) has emerged as a promising candidate biomarker, attributed to its unique biological properties, including high copy number, circular configuration, and resistance to degradation. Ccf-mtDNA enters the circulation via diverse mechanisms such as mitochondrial damage, extrusion through extracellular vesicles, and neutrophil extracellular traps, all of which are prevalent in the inflammatory and hypoxic tumor microenvironment of HCC. Accumulating evidence links alterations in ccf-mtDNA levels, sequence variants, and fragmentomic profiles with tumor burden, treatment response, and overall survival. Notably, its potential utility has been demonstrated in patients receiving locoregional therapies such as transarterial chemoembolization. However, variability in findings across studies, lack of methodological consensus, and confounding effects from liver inflammation or injury pose significant barriers to clinical translation. This review provides a comprehensive overview of the origins, biological significance, and clinical applicability of ccf-mtDNA in HCC, and explores emerging interest in mitochondrial DNA encapsulated in extracellular vesicles as a novel diagnostic tool. Addressing current challenges through assay standardization and validation in larger, stratified cohorts will be pivotal for its integration into precision oncology frameworks.

肝细胞癌(HCC)是最常见的原发性肝癌,由于其高复发率、晚期诊断和预后工具有限,仍然是全球主要的健康负担。虽然成像和治疗方式已经取得了进步,但迫切需要可靠的、无创的生物标志物来促进早期检测、治疗监测和结果预测。循环无细胞线粒体DNA (ccf-mtDNA)由于其独特的生物学特性,包括高拷贝数、环状结构和抗降解性,已成为一种有前途的候选生物标志物。Ccf-mtDNA通过线粒体损伤、细胞外囊泡挤压和中性粒细胞胞外陷阱等多种机制进入循环,这些机制在HCC的炎症和缺氧肿瘤微环境中都很普遍。越来越多的证据表明,ccf-mtDNA水平、序列变异和片段组学特征的改变与肿瘤负荷、治疗反应和总生存期有关。值得注意的是,它的潜在效用已在接受局部治疗(如经动脉化疗栓塞)的患者中得到证实。然而,研究结果的可变性,缺乏方法学共识,以及肝脏炎症或损伤的混淆效应,对临床转化构成了重大障碍。本文综述了ccf-mtDNA在HCC中的起源、生物学意义和临床适用性,并探讨了细胞外囊泡中线粒体DNA作为一种新型诊断工具的新兴趣。通过在更大的分层队列中进行分析标准化和验证来解决当前的挑战,对于将其整合到精确肿瘤学框架中至关重要。
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引用次数: 0
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