Pub Date : 2026-01-13DOI: 10.1186/s12931-026-03497-6
Jakob Raith, Jannik Ruwisch, Jonas C Schupp, Theresa Graalmann, Nora Drick, Marius M Hoeper, Antje Prasse, Jan Fuge, Felix C Ringshausen, Leonard Knegendorf, Jessica Rademacher, Sabine Dettmer, Benjamin Seeliger
Background: Bronchiectasis is a common feature in idiopathic pulmonary fibrosis (IPF) and rheumatoid arthritis-associated interstitial lung disease (RA-ILD). While these so-called traction bronchiectasis are often considered a secondary phenomenon in fibrosing ILD, their prognostic significance and relationship to respiratory pathogen detection and outcomes remain unclear.
Methods: We conducted a retrospective, single-center cohort study in IPF or fibrosing RA-ILD patients with available high-resolution computed tomography (HRCT) and lower-respiratory tract microbial samples between 2014 and 2024. Bronchiectasis was assessed using the bronchiectasis subscore of the Brody score; fibrosis was quantified by deep-learning-based automated HRCT analysis. Primary outcome was 5-year transplant-free survival; secondary outcomes included isolation of pathogens per CDC criteria, PFT trajectories, bronchiectasis-associated symptoms, and hospitalization. Statistical methods included Cox regression, linear mixed-effects modeling and correlation analysis.
Results: 267 IPF and 56 RA-ILD patients were included. Median modified Brody score was 11.5 (IQR 7-16; max possible range 0-72). Higher Brody scores strongly correlated with fibrotic extent (R = 0.6, P < 0.001). Higher scores had significantly lower baseline FVC and DLCO (P < 0.001), but no differences in PFT trajectories over time. In multivariable Cox regression, higher bronchiectasis scores were independently associated with mortality (HR 1.03 per point [95%CI 1.01-1.06], P = 0.003); fibrosis extent showed similar results (HR 1.02, CI 1.00-1.03, P = 0.017). Pathogens were found at a median of 3 months after baseline in 50.9% (IPF) and 46.4% (RA-ILD), without association with survival, symptoms or Brody scores. Staphylococcus aureus was most common (28.9%); Pseudomonas aeruginosa was rare (1.9%).
Conclusion: In both IPF and RA-ILD, higher bronchiectasis scores were associated with fibrosis extent and mortality, but not classical clinical bronchiectasis features. This supports traction bronchiectasis as a marker of fibrotic remodeling rather than a distinct syndrome.
{"title":"Clinical implications of traction bronchiectasis in IPF and fibrotic RA-ILD - a retrospective single-center cohort study.","authors":"Jakob Raith, Jannik Ruwisch, Jonas C Schupp, Theresa Graalmann, Nora Drick, Marius M Hoeper, Antje Prasse, Jan Fuge, Felix C Ringshausen, Leonard Knegendorf, Jessica Rademacher, Sabine Dettmer, Benjamin Seeliger","doi":"10.1186/s12931-026-03497-6","DOIUrl":"10.1186/s12931-026-03497-6","url":null,"abstract":"<p><strong>Background: </strong>Bronchiectasis is a common feature in idiopathic pulmonary fibrosis (IPF) and rheumatoid arthritis-associated interstitial lung disease (RA-ILD). While these so-called traction bronchiectasis are often considered a secondary phenomenon in fibrosing ILD, their prognostic significance and relationship to respiratory pathogen detection and outcomes remain unclear.</p><p><strong>Methods: </strong>We conducted a retrospective, single-center cohort study in IPF or fibrosing RA-ILD patients with available high-resolution computed tomography (HRCT) and lower-respiratory tract microbial samples between 2014 and 2024. Bronchiectasis was assessed using the bronchiectasis subscore of the Brody score; fibrosis was quantified by deep-learning-based automated HRCT analysis. Primary outcome was 5-year transplant-free survival; secondary outcomes included isolation of pathogens per CDC criteria, PFT trajectories, bronchiectasis-associated symptoms, and hospitalization. Statistical methods included Cox regression, linear mixed-effects modeling and correlation analysis.</p><p><strong>Results: </strong>267 IPF and 56 RA-ILD patients were included. Median modified Brody score was 11.5 (IQR 7-16; max possible range 0-72). Higher Brody scores strongly correlated with fibrotic extent (R = 0.6, P < 0.001). Higher scores had significantly lower baseline FVC and DLCO (P < 0.001), but no differences in PFT trajectories over time. In multivariable Cox regression, higher bronchiectasis scores were independently associated with mortality (HR 1.03 per point [95%CI 1.01-1.06], P = 0.003); fibrosis extent showed similar results (HR 1.02, CI 1.00-1.03, P = 0.017). Pathogens were found at a median of 3 months after baseline in 50.9% (IPF) and 46.4% (RA-ILD), without association with survival, symptoms or Brody scores. Staphylococcus aureus was most common (28.9%); Pseudomonas aeruginosa was rare (1.9%).</p><p><strong>Conclusion: </strong>In both IPF and RA-ILD, higher bronchiectasis scores were associated with fibrosis extent and mortality, but not classical clinical bronchiectasis features. This supports traction bronchiectasis as a marker of fibrotic remodeling rather than a distinct syndrome.</p><p><strong>Trial registration: </strong>Not applicable.</p>","PeriodicalId":49131,"journal":{"name":"Respiratory Research","volume":" ","pages":"31"},"PeriodicalIF":5.8,"publicationDate":"2026-01-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12849085/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145967562","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-13DOI: 10.1186/s12931-026-03502-y
Ben Knox-Brown, Jean Pierre Sibomana, Karl P Sylvester, Andre F S Amaral
{"title":"Lung capacity is a determinant of cardiovascular disease and myocardial infarction.","authors":"Ben Knox-Brown, Jean Pierre Sibomana, Karl P Sylvester, Andre F S Amaral","doi":"10.1186/s12931-026-03502-y","DOIUrl":"10.1186/s12931-026-03502-y","url":null,"abstract":"","PeriodicalId":49131,"journal":{"name":"Respiratory Research","volume":" ","pages":"48"},"PeriodicalIF":5.8,"publicationDate":"2026-01-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12888710/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145960521","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-13DOI: 10.1186/s12931-025-03444-x
Elpida Charalampaki, Konstantinos Gkirgkiris, David R Price, Eleni Papoutsi, Georgia M Minatsi, Georgia Dimopoulou, Stylianos E Orfanos, Ioanna Dimopoulou, Anastasia Kotanidou, Ilias I Siempos
{"title":"Association between thrombocytopenia and development of acute respiratory distress syndrome.","authors":"Elpida Charalampaki, Konstantinos Gkirgkiris, David R Price, Eleni Papoutsi, Georgia M Minatsi, Georgia Dimopoulou, Stylianos E Orfanos, Ioanna Dimopoulou, Anastasia Kotanidou, Ilias I Siempos","doi":"10.1186/s12931-025-03444-x","DOIUrl":"10.1186/s12931-025-03444-x","url":null,"abstract":"","PeriodicalId":49131,"journal":{"name":"Respiratory Research","volume":" ","pages":"46"},"PeriodicalIF":5.8,"publicationDate":"2026-01-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12888621/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145960584","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-13DOI: 10.1186/s12931-025-03463-8
Poornima Mahavadi, Martina Korfei, Christin Müller-Ruttloff, Clemens Ruppert, Ekaterina Krauss, Peter Dorfmüller, Stefan Gattenloehner, Stefanie Dimmeler, Elie El Agha, Saverio Bellusci, Susanne Herold, Biruta Witte, John Ziebuhr, Andreas Guenther
Background: While the renin-angiotensin-aldosterone system (RAAS) is critically involved in pathomechanisms related to SARS-CoV-2 infection, the role of ongoing therapy with angiotensin-converting enzyme 1 inhibitors (ACEi) or Angiotensin-II type 1 receptor (AT1R) blockers (ARB) is much less clear. We evaluated the effects of the ACEi enalapril (ENA) and the ARB losartan (LOS) on SARS-CoV-2 infection in human ex vivo-cultured, precision-cut lung slices (PCLS) obtained from normal human lung tissue.
Methods: PCLS were pre-treated for 5d with vehicle, LOS or ENA (300 µM), followed by mock infection or infection with SARS-CoV-2 and incubation with vehicle, LOS or ENA for 1d or 2d. Thereafter, PCLS were harvested for analysis of viral replication, inflammatory responses, endoplasmic reticulum (ER) stress and apoptosis pathways.
Results: Both LOS and ENA significantly reduced viral replication in PCLS, with ENA being more potent. LOS was more efficient than ENA in reducing the expression of IL1B, CCL2, CXCL2 and TNFA, but not of IL6, whereas ENA preferentially caused a reduction of IL6 and CCL2 in SARS-CoV-2-infected PCLS. Further, ENA, but not LOS, significantly decreased the expression of viral entry factors, ACE2 and transmembrane serine protease 2 (TMPRSS2), in infected PCLS. Importantly, LOS or ENA did not exert cytotoxic effects.
Conclusions: RAAS-antagonizing drugs do not seem to exert detrimental effects during SARS-CoV-2 infection. In opposite, in an ex-vivo model of human PCLS, such treatment was found to dampen SARS-CoV-2 infection and consecutive inflammation.
{"title":"RAAS antagonists dampen the SARS-CoV-2 infection in ex-vivo cultured human precision-cut lung slices.","authors":"Poornima Mahavadi, Martina Korfei, Christin Müller-Ruttloff, Clemens Ruppert, Ekaterina Krauss, Peter Dorfmüller, Stefan Gattenloehner, Stefanie Dimmeler, Elie El Agha, Saverio Bellusci, Susanne Herold, Biruta Witte, John Ziebuhr, Andreas Guenther","doi":"10.1186/s12931-025-03463-8","DOIUrl":"10.1186/s12931-025-03463-8","url":null,"abstract":"<p><strong>Background: </strong>While the renin-angiotensin-aldosterone system (RAAS) is critically involved in pathomechanisms related to SARS-CoV-2 infection, the role of ongoing therapy with angiotensin-converting enzyme 1 inhibitors (ACEi) or Angiotensin-II type 1 receptor (AT<sub>1</sub>R) blockers (ARB) is much less clear. We evaluated the effects of the ACEi enalapril (ENA) and the ARB losartan (LOS) on SARS-CoV-2 infection in human ex vivo-cultured, precision-cut lung slices (PCLS) obtained from normal human lung tissue.</p><p><strong>Methods: </strong>PCLS were pre-treated for 5d with vehicle, LOS or ENA (300 µM), followed by mock infection or infection with SARS-CoV-2 and incubation with vehicle, LOS or ENA for 1d or 2d. Thereafter, PCLS were harvested for analysis of viral replication, inflammatory responses, endoplasmic reticulum (ER) stress and apoptosis pathways.</p><p><strong>Results: </strong>Both LOS and ENA significantly reduced viral replication in PCLS, with ENA being more potent. LOS was more efficient than ENA in reducing the expression of IL1B, CCL2, CXCL2 and TNFA, but not of IL6, whereas ENA preferentially caused a reduction of IL6 and CCL2 in SARS-CoV-2-infected PCLS. Further, ENA, but not LOS, significantly decreased the expression of viral entry factors, ACE2 and transmembrane serine protease 2 (TMPRSS2), in infected PCLS. Importantly, LOS or ENA did not exert cytotoxic effects.</p><p><strong>Conclusions: </strong>RAAS-antagonizing drugs do not seem to exert detrimental effects during SARS-CoV-2 infection. In opposite, in an ex-vivo model of human PCLS, such treatment was found to dampen SARS-CoV-2 infection and consecutive inflammation.</p>","PeriodicalId":49131,"journal":{"name":"Respiratory Research","volume":" ","pages":"28"},"PeriodicalIF":5.8,"publicationDate":"2026-01-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12849188/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145967619","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-13DOI: 10.1186/s12931-026-03498-5
Yuanshu Li, Jiaqi Liu, Shuilian Chi, Rongrong Lv, Haowen Wang, Li Jiang, Yulong Xie, Chaoqun Wang
Bronchioalveolar stem cells (BASCs), located at the bronchioalveolar duct junction (BADJ), contribute to adult lung regeneration after injury, yet their role during postnatal lung morphogenesis remains poorly characterized. In this study, we showed that BASCs first emerged at birth and persisted throughout the postnatal saccular stage with stable localization and abundance. To trace their fate, we generated a SftpcDreER knock-in mouse and combined it with Scgb1a1CreER and dual-reporter H11LSL - ZsG_RSR-tdT mice to establish a dual recombinase-mediated lineage tracing system (BASC-Tracer). Using this system, we observed that BASCs expanded postnatally and migrated into both alveolar and airway compartments. In the alveoli, they lost SCGB1A1 expression and differentiated into AT2 and AT1 cells to drive alveolar maturation, whereas in the airways, they lost SFTPC expression and gave rise to club cells. Furthermore, we employed a hyperoxia-induced bronchopulmonary dysplasia model to assess the injury response of BASCs during lung development. We found that hyperoxic exposure markedly suppresses BASC regenerative capacity. Finally, spatial transcriptomic analysis revealed that BASCs reside within a distinct BADJ-associated niche, characterized by a unique repertoire of signaling ligands that distinguishes this niche from those of AT2 and club cells. Together, these findings delineate the dynamic behavior of BASCs during lung development and provide spatial characterization of their niche.
{"title":"Developmental dynamics of bronchioalveolar stem cells revealed by dual-reporter lineage tracing.","authors":"Yuanshu Li, Jiaqi Liu, Shuilian Chi, Rongrong Lv, Haowen Wang, Li Jiang, Yulong Xie, Chaoqun Wang","doi":"10.1186/s12931-026-03498-5","DOIUrl":"10.1186/s12931-026-03498-5","url":null,"abstract":"<p><p>Bronchioalveolar stem cells (BASCs), located at the bronchioalveolar duct junction (BADJ), contribute to adult lung regeneration after injury, yet their role during postnatal lung morphogenesis remains poorly characterized. In this study, we showed that BASCs first emerged at birth and persisted throughout the postnatal saccular stage with stable localization and abundance. To trace their fate, we generated a Sftpc<sup>DreER</sup> knock-in mouse and combined it with Scgb1a1<sup>CreER</sup> and dual-reporter H11<sup>LSL - ZsG_RSR-tdT</sup> mice to establish a dual recombinase-mediated lineage tracing system (BASC-Tracer). Using this system, we observed that BASCs expanded postnatally and migrated into both alveolar and airway compartments. In the alveoli, they lost SCGB1A1 expression and differentiated into AT2 and AT1 cells to drive alveolar maturation, whereas in the airways, they lost SFTPC expression and gave rise to club cells. Furthermore, we employed a hyperoxia-induced bronchopulmonary dysplasia model to assess the injury response of BASCs during lung development. We found that hyperoxic exposure markedly suppresses BASC regenerative capacity. Finally, spatial transcriptomic analysis revealed that BASCs reside within a distinct BADJ-associated niche, characterized by a unique repertoire of signaling ligands that distinguishes this niche from those of AT2 and club cells. Together, these findings delineate the dynamic behavior of BASCs during lung development and provide spatial characterization of their niche.</p>","PeriodicalId":49131,"journal":{"name":"Respiratory Research","volume":" ","pages":"51"},"PeriodicalIF":5.8,"publicationDate":"2026-01-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12888639/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145967657","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-13DOI: 10.1186/s12931-026-03496-7
Rui Xu, Liangyuan Li, Yongchun Shen, Xiaoju Tang, Hui Zhu, Kaige Wang, Hong Xu, Liheng Xie, Chenhui Su, Yuying Jiang, Dan Liu, Fengming Luo
Background: Disruption of parasympathetic pulmonary nerves, which release acetylcholine and trigger airway smooth muscle constriction, has been shown to improve lung function and alleviate symptoms in patients with chronic obstructive pulmonary disease (COPD). However, the current targeted lung denervation (TLD) mono-polar radiofrequency (RF) ablation system has the potential for structural improvement to enhance the generalizability and safety of the TLD procedure.
Objective: To develop a novel TLD multi-polar RF ablation for COPD treatment and evaluate its feasibility, safety, and efficacy.
Methods: In the preclinical study, we performed TLD in vitro (porcine lung and liver model) to validate its feasibility and in vivo (dogs and sheep) to ensure its safety and preliminary efficacy. Subsequently, we conducted a first-in-man study to evaluate TLD in patients with COPD forced expiratory volume in 1 s (FEV1)/forced vital capacity (FVC) (FEV1/FVC < 0.70; FEV1 20%-60% predicted) with three energy settings (12 W, 14 W, and 16 W). The primary safety endpoint was the occurrence of any adverse events or serious adverse events deemed related to the TLD device or the procedure. The efficacy endpoints included the instrument and technical success rates of the TLD procedures, as well as changes in lung function, exercise capacity assessments, and health-related quality of life.
Results: In vitro experiments demonstrated that using ice-cold saline irrigation reduced the temperature at the ablation point compared to room-temperature saline (44 °C vs. 63 °C). The ablation range was 6-8 mm when the single electrode power was 12-16 W, coinciding with the distribution of peribronchial nerves. In the in vivo experiments, we confirmed the feasibility of performing TLD in dogs without causing esophageal injury. In sheep, the bronchoscopy and histological examinations showed airway epithelial restitution within a one-year follow-up. Postprocedural pulmonary airway resistance was reduced by approximately 30% with a sustained 30% decrease in axonal staining. In the first-in-man study, the nine patients included reported good tolerance with a success instrument rate of 100% and a technical success rate of 88.9%. FEV1 increased by 160 ± 120 mL at 6 months post-TLD and 80 ± 150 mL at 12 months post-TLD from baseline. The patients' motor ability and quality of life scores showed improvement but returned to baseline levels by the twelfth month.
Conclusion: This study demonstrated the feasibility of the novel TLD multi-polar RF ablation system in COPD patients. Its safety and clinical efficacy require further validation in larger patient cohorts.
{"title":"A novel targeted lung denervation multi-polar radiofrequency ablation system for moderate to severe COPD patients: a translational study.","authors":"Rui Xu, Liangyuan Li, Yongchun Shen, Xiaoju Tang, Hui Zhu, Kaige Wang, Hong Xu, Liheng Xie, Chenhui Su, Yuying Jiang, Dan Liu, Fengming Luo","doi":"10.1186/s12931-026-03496-7","DOIUrl":"10.1186/s12931-026-03496-7","url":null,"abstract":"<p><strong>Background: </strong>Disruption of parasympathetic pulmonary nerves, which release acetylcholine and trigger airway smooth muscle constriction, has been shown to improve lung function and alleviate symptoms in patients with chronic obstructive pulmonary disease (COPD). However, the current targeted lung denervation (TLD) mono-polar radiofrequency (RF) ablation system has the potential for structural improvement to enhance the generalizability and safety of the TLD procedure.</p><p><strong>Objective: </strong>To develop a novel TLD multi-polar RF ablation for COPD treatment and evaluate its feasibility, safety, and efficacy.</p><p><strong>Methods: </strong>In the preclinical study, we performed TLD in vitro (porcine lung and liver model) to validate its feasibility and in vivo (dogs and sheep) to ensure its safety and preliminary efficacy. Subsequently, we conducted a first-in-man study to evaluate TLD in patients with COPD forced expiratory volume in 1 s (FEV<sub>1</sub>)/forced vital capacity (FVC) (FEV<sub>1</sub>/FVC < 0.70; FEV<sub>1</sub> 20%-60% predicted) with three energy settings (12 W, 14 W, and 16 W). The primary safety endpoint was the occurrence of any adverse events or serious adverse events deemed related to the TLD device or the procedure. The efficacy endpoints included the instrument and technical success rates of the TLD procedures, as well as changes in lung function, exercise capacity assessments, and health-related quality of life.</p><p><strong>Results: </strong>In vitro experiments demonstrated that using ice-cold saline irrigation reduced the temperature at the ablation point compared to room-temperature saline (44 °C vs. 63 °C). The ablation range was 6-8 mm when the single electrode power was 12-16 W, coinciding with the distribution of peribronchial nerves. In the in vivo experiments, we confirmed the feasibility of performing TLD in dogs without causing esophageal injury. In sheep, the bronchoscopy and histological examinations showed airway epithelial restitution within a one-year follow-up. Postprocedural pulmonary airway resistance was reduced by approximately 30% with a sustained 30% decrease in axonal staining. In the first-in-man study, the nine patients included reported good tolerance with a success instrument rate of 100% and a technical success rate of 88.9%. FEV<sub>1</sub> increased by 160 ± 120 mL at 6 months post-TLD and 80 ± 150 mL at 12 months post-TLD from baseline. The patients' motor ability and quality of life scores showed improvement but returned to baseline levels by the twelfth month.</p><p><strong>Conclusion: </strong>This study demonstrated the feasibility of the novel TLD multi-polar RF ablation system in COPD patients. Its safety and clinical efficacy require further validation in larger patient cohorts.</p><p><strong>Clinical trial number: </strong>ChiCTR2100047843 ( http://www.chictr.org.cn/ ). Registration date: 27 June, 2021.</p>","PeriodicalId":49131,"journal":{"name":"Respiratory Research","volume":" ","pages":"50"},"PeriodicalIF":5.8,"publicationDate":"2026-01-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12888183/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145960509","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-13DOI: 10.1186/s12931-025-03487-0
Aida Fallahzadeh, Tara Mahmoodi, Sophia Kwon, Mengling Liu, Anna Nolan
Background: Exposure to particulate matter (PM) is a significant public health concern associated with respiratory, cardiovascular, and metabolic diseases. Oxidative stress is a key biological mechanism mediating the harmful effects of PM exposure. However, a comprehensive review of relating PM exposure to omics layers of oxidative stress has been lacking. We aimed to systematically review the current evidence on the associations between PM exposure and the multi-omics signatures of oxidative stress.
Methods: We conducted a systematic review of studies published between January 2021 and March 2024 in PubMed and Web of Science, following a registered protocol (PROSPERO ID: CRD42024617742). Eligible studies assessed the impact of PM exposure on oxidative stress-related omics in adult human populations. Data on exposure assessment, study characteristics, and omics outcomes were extracted, and the risk of bias was evaluated using the Newcastle-Ottawa Scale and Cochrane's.
Results: Seventy-seven studies were included. PM exposure was consistently associated with oxidative stress markers across multiple omics platforms. Studies on the analytes showed that PM was associated with an increase in oxidative markers. Metabolomics studies revealed alterations in pro-oxidant metabolites (e.g., eicosanoids, ceramides) and disruptions in antioxidant pathways (e.g., glutathione, vitamin C, and E metabolism). PM exposure was also linked to changes in energy metabolism, fatty acid oxidation, and detoxification pathways. Genomics studies reported differential methylation in genes involved in oxidative stress and inflammation. Microbiome studies suggest that PM exposure alters the composition of gut and nasal microbiota, favoring a pro-oxidative profile. However, some studies reported no significant associations, highlighting heterogeneity in findings.
Conclusion: Our systematic review demonstrates that PM exposure affects multiple molecular pathways related to oxidative stress across diverse omics platforms. These findings highlight the complex responses to PM, underscoring the need for integrative multi-omics approaches to fully understand the health impacts of air pollution.
背景:暴露于颗粒物(PM)是一个与呼吸、心血管和代谢疾病相关的重大公共卫生问题。氧化应激是介导PM暴露有害效应的关键生物学机制。然而,关于PM暴露与组学氧化应激层的全面审查一直缺乏。我们旨在系统地回顾目前关于PM暴露与氧化应激多组学特征之间关联的证据。方法:我们根据注册协议(PROSPERO ID: CRD42024617742),对2021年1月至2024年3月间发表在PubMed和Web of Science上的研究进行了系统综述。合格的研究评估了成人人群中PM暴露对氧化应激相关组学的影响。提取有关暴露评估、研究特征和组学结果的数据,并使用纽卡斯尔-渥太华量表和科克伦量表评估偏倚风险。结果:纳入77项研究。在多个组学平台上,PM暴露始终与氧化应激标志物相关。对分析物的研究表明,PM与氧化标志物的增加有关。代谢组学研究揭示了促氧化代谢物(如类二十烷酸、神经酰胺)的改变和抗氧化途径(如谷胱甘肽、维生素C和E代谢)的破坏。PM暴露还与能量代谢、脂肪酸氧化和解毒途径的变化有关。基因组学研究报告了氧化应激和炎症相关基因的差异甲基化。微生物组研究表明,PM暴露会改变肠道和鼻腔微生物群的组成,有利于促进氧化。然而,一些研究报告没有显著关联,突出了研究结果的异质性。结论:我们的系统综述表明,PM暴露会影响不同组学平台上与氧化应激相关的多种分子途径。这些发现突出了对PM的复杂反应,强调需要综合多组学方法来充分了解空气污染对健康的影响。
{"title":"Multi-omics of oxidative stress and particulate matter exposure: a systematic review.","authors":"Aida Fallahzadeh, Tara Mahmoodi, Sophia Kwon, Mengling Liu, Anna Nolan","doi":"10.1186/s12931-025-03487-0","DOIUrl":"10.1186/s12931-025-03487-0","url":null,"abstract":"<p><strong>Background: </strong>Exposure to particulate matter (PM) is a significant public health concern associated with respiratory, cardiovascular, and metabolic diseases. Oxidative stress is a key biological mechanism mediating the harmful effects of PM exposure. However, a comprehensive review of relating PM exposure to omics layers of oxidative stress has been lacking. We aimed to systematically review the current evidence on the associations between PM exposure and the multi-omics signatures of oxidative stress.</p><p><strong>Methods: </strong>We conducted a systematic review of studies published between January 2021 and March 2024 in PubMed and Web of Science, following a registered protocol (PROSPERO ID: CRD42024617742). Eligible studies assessed the impact of PM exposure on oxidative stress-related omics in adult human populations. Data on exposure assessment, study characteristics, and omics outcomes were extracted, and the risk of bias was evaluated using the Newcastle-Ottawa Scale and Cochrane's.</p><p><strong>Results: </strong>Seventy-seven studies were included. PM exposure was consistently associated with oxidative stress markers across multiple omics platforms. Studies on the analytes showed that PM was associated with an increase in oxidative markers. Metabolomics studies revealed alterations in pro-oxidant metabolites (e.g., eicosanoids, ceramides) and disruptions in antioxidant pathways (e.g., glutathione, vitamin C, and E metabolism). PM exposure was also linked to changes in energy metabolism, fatty acid oxidation, and detoxification pathways. Genomics studies reported differential methylation in genes involved in oxidative stress and inflammation. Microbiome studies suggest that PM exposure alters the composition of gut and nasal microbiota, favoring a pro-oxidative profile. However, some studies reported no significant associations, highlighting heterogeneity in findings.</p><p><strong>Conclusion: </strong>Our systematic review demonstrates that PM exposure affects multiple molecular pathways related to oxidative stress across diverse omics platforms. These findings highlight the complex responses to PM, underscoring the need for integrative multi-omics approaches to fully understand the health impacts of air pollution.</p>","PeriodicalId":49131,"journal":{"name":"Respiratory Research","volume":" ","pages":"47"},"PeriodicalIF":5.8,"publicationDate":"2026-01-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12888558/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145960515","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-13DOI: 10.1186/s12931-025-03484-3
Maria Carelli, Jessica Miotti, Maria Elisabetta Zanolin, Maria Beatrice Bilò, Roberto Bono, Mattia Cominacini, Angelo Guido Corsico, Pietro Pirina, Ernesto Crisafulli, Marcello Ferrari, Lucia Cazzoletti
{"title":"Mediterranean diet and asthma in adults: a multicentre case-control study in a general population sample.","authors":"Maria Carelli, Jessica Miotti, Maria Elisabetta Zanolin, Maria Beatrice Bilò, Roberto Bono, Mattia Cominacini, Angelo Guido Corsico, Pietro Pirina, Ernesto Crisafulli, Marcello Ferrari, Lucia Cazzoletti","doi":"10.1186/s12931-025-03484-3","DOIUrl":"10.1186/s12931-025-03484-3","url":null,"abstract":"","PeriodicalId":49131,"journal":{"name":"Respiratory Research","volume":" ","pages":"49"},"PeriodicalIF":5.8,"publicationDate":"2026-01-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12888413/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145967663","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Background: Silicosis is an incurable occupational lung disease characterized by progressive fibrosis and respiratory failure, imposing a significant global health burden. Surfactant protein A (SP-A) plays a critical role in maintaining pulmonary homeostasis, yet its mechanistic role in silicosis remains unclear.
Methods: SP-A expression was assessed in lung tissues from patients with silicosis and in silica-exposed mice. Sftpa1 gene knockout (Sftpa1-/-) mice were generated to evaluate the functional role of SP-A in vivo, including lung pathology, collagen deposition, and pulmonary function. RNA sequencing was performed to uncover underlying molecular mechanisms. A549 cells with SP-A silenced by siRNA were employed for in vitro experiments.
Results: SP-A levels were notably reduced in the lung tissue of silicosis patients and in experimental silicosis mice, correlating inversely with disease severity. Sftpa1⁻/⁻ mice showed markedly exacerbated silica-induced pulmonary fibrosis, extracellular matrix deposition, and functional decline. RNA-seq analysis highlighted activation of intrinsic apoptosis pathways related to pulmonary fibrosis. Mechanistically, SP-A deficiency disrupted the balance of Bcl-2 and Bax, activated Caspase-3, and promoted epithelial apoptosis. Inhibition of the intrinsic apoptosis pathway mitigated the pro-apoptotic effects of SP-A silencing.
Conclusions: These findings demonstrate that SP-A deficiency exacerbates silica-induced pulmonary fibrosis by promoting epithelial apoptosis involving the Bcl-2/Bax/Caspase pathway, highlighting the role of SP-A in fibrogenesis progression and providing a basis for its potential therapeutic target for silicosis.
{"title":"Surfactant protein A deficiency aggravates silica-induced pulmonary fibrosis by promoting intrinsic apoptosis of alveolar type II epithelial cells.","authors":"Yali Lan, Ping Wang, Zhiming Hu, Wenyao Su, Yushi Ou, Jianlin Shen, Jiayin Feng, Huifan Yang, Ziping Zou, Zexian Dong, Chuifei Zhong, Kengkeng Chen, Xiaohui Tan, Yiru Qin, Na Zhao","doi":"10.1186/s12931-025-03478-1","DOIUrl":"10.1186/s12931-025-03478-1","url":null,"abstract":"<p><strong>Background: </strong>Silicosis is an incurable occupational lung disease characterized by progressive fibrosis and respiratory failure, imposing a significant global health burden. Surfactant protein A (SP-A) plays a critical role in maintaining pulmonary homeostasis, yet its mechanistic role in silicosis remains unclear.</p><p><strong>Methods: </strong>SP-A expression was assessed in lung tissues from patients with silicosis and in silica-exposed mice. Sftpa1 gene knockout (Sftpa1<sup>-/-</sup>) mice were generated to evaluate the functional role of SP-A in vivo, including lung pathology, collagen deposition, and pulmonary function. RNA sequencing was performed to uncover underlying molecular mechanisms. A549 cells with SP-A silenced by siRNA were employed for in vitro experiments.</p><p><strong>Results: </strong>SP-A levels were notably reduced in the lung tissue of silicosis patients and in experimental silicosis mice, correlating inversely with disease severity. Sftpa1<sup>⁻/⁻</sup> mice showed markedly exacerbated silica-induced pulmonary fibrosis, extracellular matrix deposition, and functional decline. RNA-seq analysis highlighted activation of intrinsic apoptosis pathways related to pulmonary fibrosis. Mechanistically, SP-A deficiency disrupted the balance of Bcl-2 and Bax, activated Caspase-3, and promoted epithelial apoptosis. Inhibition of the intrinsic apoptosis pathway mitigated the pro-apoptotic effects of SP-A silencing.</p><p><strong>Conclusions: </strong>These findings demonstrate that SP-A deficiency exacerbates silica-induced pulmonary fibrosis by promoting epithelial apoptosis involving the Bcl-2/Bax/Caspase pathway, highlighting the role of SP-A in fibrogenesis progression and providing a basis for its potential therapeutic target for silicosis.</p>","PeriodicalId":49131,"journal":{"name":"Respiratory Research","volume":" ","pages":"45"},"PeriodicalIF":5.8,"publicationDate":"2026-01-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12879440/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145949337","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}